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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U04897-1
Contig ID Contig-U04897-1
Contig update 2002. 9.13
Contig sequence 
>Contig-U04897-1 (Contig-U04897-1Q) /CSM_Contig/Contig-U04897-1Q.Seq.d
ATTTTATTTTATTATTGTTTTTTTTTTTAAAAAGGAAAAATAAAAAAAAT
ATAAAATAAAAAAAAAAAAAAAATAATAAAAAAATTCCTTTTGTTTAAAG
AATTTAAATTTTTTTTTTTAAATTTAAATTTAAAGTCTCACCACATCCCA
GTTATTTAGAAATAATTTGTAAAATTAGAAATATTAAATCAATTTCA
Gap no gap
Contig length 197
Chromosome number (1..6, M) 2
Chromosome length 8467578
Start point 3706848
End point 3706650
Strand (PLUS/MINUS) MINUS
Number of clones 1
Number of EST 1
Link to clone list U04897
List of clone(s) 

est1=SSD634F,1,198
Translated Amino Acid sequence 
ilfyycfff*kgkikki*NKKKKKIIKKFLLFKEFKFFFLNLNLKSHHIPVI*k*fvkle
ilnqf
Translated Amino Acid sequence (All Frames) 
Frame A:
ilfyycfff*kgkikki*NKKKKKIIKKFLLFKEFKFFFLNLNLKSHHIPVI*k*fvkle
ilnqf


Frame B:
fyfiivfffkkek*kkykikkkkk**knsfclknlnfff*i*i*slttsqlfrnnl*n*k
y*inf


Frame C:
filllffflkrknkknik*kkkknnkkipfv*ri*ifffkfkfkvsphpsyleiickirn
iksis
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U04897-1 (Contig-U04897-1Q)
/CSM_Contig/Contig-U04897-1Q.Seq.d
         (197 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U04897-1 (Contig-U04897-1Q) /CSM_Contig/Conti...   159  1e-39
Contig-U14467-1 (Contig-U14467-1Q) /CSM_Contig/Conti...    48  3e-06
Contig-U13849-1 (Contig-U13849-1Q) /CSM_Contig/Conti...    48  3e-06
Contig-U05843-1 (Contig-U05843-1Q) /CSM_Contig/Conti...    48  3e-06
Contig-U01940-1 (Contig-U01940-1Q) /CSM_Contig/Conti...    46  1e-05
Contig-U01005-1 (Contig-U01005-1Q) /CSM_Contig/Conti...    46  1e-05
Contig-U13501-1 (Contig-U13501-1Q) /CSM_Contig/Conti...    44  5e-05
Contig-U12221-1 (Contig-U12221-1Q) /CSM_Contig/Conti...    44  5e-05
Contig-U13859-1 (Contig-U13859-1Q) /CSM_Contig/Conti...    42  2e-04
Contig-U13851-1 (Contig-U13851-1Q) /CSM_Contig/Conti...    42  2e-04

>Contig-U04897-1 (Contig-U04897-1Q) /CSM_Contig/Contig-U04897-1Q.Seq.d
          Length = 197

 Score =  159 bits (80), Expect = 1e-39
 Identities = 102/113 (90%)
 Strand = Plus / Plus

                                                                       
Query: 85  ttccttttgtttaaagaatttaaannnnnnnnnnnaaatttaaatttaaagtctcaccac 144
           ||||||||||||||||||||||||           |||||||||||||||||||||||||
Sbjct: 85  ttccttttgtttaaagaatttaaatttttttttttaaatttaaatttaaagtctcaccac 144

                                                                
Query: 145 atcccagttatttagaaataatttgtaaaattagaaatattaaatcaatttca 197
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145 atcccagttatttagaaataatttgtaaaattagaaatattaaatcaatttca 197


 Score = 56.0 bits (28), Expect = 1e-08
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                      
Query: 1  attttattttattattgttttttttttt 28
          ||||||||||||||||||||||||||||
Sbjct: 1  attttattttattattgttttttttttt 28


 Score = 36.2 bits (18), Expect = 0.013
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                
Query: 7  ttttattattgttttttttttt 28
          |||||||||| |||||||||||
Sbjct: 81 ttttattatttttttttttttt 60


 Score = 30.2 bits (15), Expect = 0.81
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                          
Query: 120 aaatttaaatttaaa 134
           |||||||||||||||
Sbjct: 131 aaatttaaatttaaa 117


 Score = 30.2 bits (15), Expect = 0.81
 Identities = 21/23 (91%)
 Strand = Plus / Minus

                                 
Query: 6  attttattattgttttttttttt 28
          ||||| ||||| |||||||||||
Sbjct: 85 atttttttattattttttttttt 63


>Contig-U14467-1 (Contig-U14467-1Q) /CSM_Contig/Contig-U14467-1Q.Seq.d
          Length = 974

 Score = 48.1 bits (24), Expect = 3e-06
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                       
Query: 1   attttattttattattgttttttttttt 28
           |||||||||||||||| |||||||||||
Sbjct: 901 attttattttattatttttttttttttt 874


 Score = 30.2 bits (15), Expect = 0.81
 Identities = 27/30 (90%), Gaps = 2/30 (6%)
 Strand = Plus / Minus

                                         
Query: 1   attttatttta--ttattgttttttttttt 28
           |||||||||||  ||||| |||||||||||
Sbjct: 906 attttattttattttattattttttttttt 877


>Contig-U13849-1 (Contig-U13849-1Q) /CSM_Contig/Contig-U13849-1Q.Seq.d
          Length = 1335

 Score = 48.1 bits (24), Expect = 3e-06
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                        
Query: 1    attttattttattattgttttttttttt 28
            |||||||||||||||| |||||||||||
Sbjct: 1329 attttattttattatttttttttttttt 1302


 Score = 28.2 bits (14), Expect = 3.2
 Identities = 26/29 (89%), Gaps = 2/29 (6%)
 Strand = Plus / Minus

                                         
Query: 2    ttttatttta--ttattgttttttttttt 28
            ||||||||||  ||||| |||||||||||
Sbjct: 1333 ttttattttattttattattttttttttt 1305


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 73,335
Number of Sequences: 6905
Number of extensions: 73335
Number of successful extensions: 6931
Number of sequences better than 10.0: 1284
length of query: 197
length of database: 5,674,871
effective HSP length: 15
effective length of query: 182
effective length of database: 5,571,296
effective search space: 1013975872
effective search space used: 1013975872
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)
dna update 2009. 7. 5
Homology vs DNA 
Query= Contig-U04897-1 (Contig-U04897-1Q) /CSM_Contig/Contig-U04897-1Q.Seq.d
         (197 letters)

Database: ddbj_A
           102,105,510 sequences; 101,790,757,118 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU072191) Dictyostelium discoideum slug cDNA, clone SSD634.      155   2e-46  3
(AC116984) Dictyostelium discoideum chromosome 2 map 2567470...   155   3e-42  2
(DV968374) GC06371 Gracilaria changii cDNA library Gracilari...    40   0.002  3
(AM469388) Vitis vinifera contig VV78X155396.7, whole genome...    40   0.006  2
(AP010438) Lotus japonicus genomic DNA, chromosome 3, clone:...    52   0.008  1
(AC217037) Populus trichocarpa clone POP049-G18, complete se...    50   0.030  1
(DQ372942) Methanococcus voltae putative GMP synthase (MVO17...    34   0.031  4
(FP101994) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    36   0.043  4
(AC223187) Bos taurus clone CH240-426J23, WORKING DRAFT SEQU...    44   0.11   5
(CU104722) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    34   0.19   5
(BQ456605) ke40h04.y1 Dirofilaria immitis adult pAMP1 v1 Dir...    32   0.20   3
(AC079962) Homo sapiens chromosome 4 clone CTD-2354O24 map 4...    40   0.30   4
(EI452500) PV_GBa0052K02.r PV_GBa Phaseolus vulgaris genomic...    36   0.31   2
(AC152504) Pan troglodytes BAC clone RP43-147M24 from chromo...    40   0.34   4
(DQ302100) Vanhornia eucnemidarum mitochondrion, complete ge...    32   0.36   4
(AX347002) Sequence 2073 from Patent WO0200928.                    34   0.45   3
(AC069064) Homo sapiens 3 BAC RP11-436P4 (Roswell Park Cance...    46   0.46   1
(AC118504) Rattus norvegicus clone CH230-160B11, *** SEQUENC...    46   0.46   1
(AC118394) Rattus norvegicus clone CH230-106B19, *** SEQUENC...    46   0.46   1
(AC110715) Rattus norvegicus clone CH230-155J23, *** SEQUENC...    46   0.46   1
(AC096991) Rattus norvegicus clone CH230-136O9, *** SEQUENCI...    46   0.46   1
(EJ596981) 1092961095236 Global-Ocean-Sampling_GS-29-01-01-1...    46   0.46   1
(AF274444) Carsonella ruddii ribosomal protein L11 (rpL11), ...    32   0.52   4
(BX571760) Zebrafish DNA sequence from clone DKEYP-78A1 in l...    42   0.80   4
(CL048659) CH216-68G23_Sp6.1 CH216 Xenopus (Silurana) tropic...    30   0.83   3
(AC142294) Pan troglodytes BAC clone RP43-73M4 from chromoso...    32   0.97   2
(FP102338) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    32   0.97   2
(AC145893) Pan troglodytes BAC clone RP43-8C18 from chromoso...    32   0.97   2
(FP102181) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    32   0.98   2
(AX345368) Sequence 439 from Patent WO0200928.                     30   1.00   4
(AC110087) Homo sapiens BAC clone RP11-662P10 from 2, comple...    36   1.0    2
(BH506790) BOHLI08TF BOHL Brassica oleracea genomic clone BO...    42   1.0    2
(AF402141) Schizophyllum commune mitochondrial DNA, complete...    34   1.0    6
(AM425668) Vitis vinifera contig VV78X256369.13, whole genom...    36   1.1    2
(AC138157) Carollia perspicillata clone 45N16, complete sequ...    38   1.2    4
(Z93021) Human DNA sequence from clone RP3-516C23 on chromos...    40   1.3    3
(GE657746) CBUF3850.b1 B.anynana_abdomen_2-10kb Bicyclus any...    36   1.3    2
(BX572646) Zebrafish DNA sequence from clone DKEY-245O11 in ...    34   1.3    4
(GE657747) CBUF3850.g1 B.anynana_abdomen_2-10kb Bicyclus any...    36   1.3    2
(GE675827) CBTY389.g1 B.anynana_embryo_nosize Bicyclus anyna...    36   1.3    2
(GE657745) CBUF2780.b1 B.anynana_abdomen_2-10kb Bicyclus any...    36   1.3    2
(GE657748) CBUF2780.g1 B.anynana_abdomen_2-10kb Bicyclus any...    36   1.3    2
(GE675824) CBTY424.g1 B.anynana_embryo_nosize Bicyclus anyna...    36   1.3    2
(GE675825) CBTY733.g1 B.anynana_embryo_nosize Bicyclus anyna...    36   1.3    2
(GE673710) CBTZ1703.g1 B.anynana_embryo_2-10kb Bicyclus anyn...    36   1.3    2
(GE673711) CBTZ903.g1 B.anynana_embryo_2-10kb Bicyclus anyna...    36   1.3    2
(EJ451064) 1093015424514 Global-Ocean-Sampling_GS-28-01-01-1...    40   1.3    2
(GE675823) CBTY2653.g1 B.anynana_embryo_nosize Bicyclus anyn...    36   1.3    2
(GE675826) CBTY1627.g1 B.anynana_embryo_nosize Bicyclus anyn...    36   1.3    2
(GE675817) CBTY1627.b1 B.anynana_embryo_nosize Bicyclus anyn...    36   1.3    2
(GE676199) CBTY2404.b1 B.anynana_embryo_nosize Bicyclus anyn...    36   1.3    2
(AM615118) Entamoeba invadens IP1 GSS, clone inv058g10.p1k.        32   1.3    3
(GE676200) CBTY2404.g1 B.anynana_embryo_nosize Bicyclus anyn...    36   1.3    2
(AC155880) Medicago truncatula chromosome 2 clone mte1-55i22...    34   1.3    4
(DQ927303) Tetrahymena malaccensis strain MP75 mitochondrion...    36   1.4    5
(GE675822) CBTY689.g1 B.anynana_embryo_nosize Bicyclus anyna...    36   1.4    2
(CR925719) Zebrafish DNA sequence from clone DKEYP-68F4 in l...    42   1.4    3
(AC115683) Dictyostelium discoideum chromosome 2 map complem...    34   1.5    4
(AB055823) Delias germana mitochondrial ND5 gene for NADH de...    34   1.6    3
(AB027605) Delias muliensis mitochondrial mRNA for NADH dehy...    34   1.6    3
(AL389914) Human chromosome 14 DNA sequence BAC C-2307P3 of ...    44   1.8    1
(AL356800) Human chromosome 14 DNA sequence BAC R-97N10 of l...    44   1.8    1
(AC068032) Homo sapiens clone RP11-265B2, WORKING DRAFT SEQU...    44   1.8    1
(AC026896) Homo sapiens chromosome 7 clone RP11-546P19 map 7...    44   1.8    1
(AC222109) Bos taurus clone CH240-371H10, WORKING DRAFT SEQU...    44   1.8    1
(AC222093) Bos taurus clone CH240-371N11, WORKING DRAFT SEQU...    44   1.8    1
(AC222069) Bos taurus clone CH240-373G18, WORKING DRAFT SEQU...    44   1.8    1
(AC179916) Strongylocentrotus purpuratus clone R3-1003E11, W...    44   1.8    1
(AC174687) Bos taurus clone CH240-409H21, WORKING DRAFT SEQU...    44   1.8    1
(ED810678) ML__Ba0056A09f ML__Ba Mimulus lewisii genomic, ge...    44   1.8    1
(DT366708) HC-H-S01-0344-LF heat-induced haemocyte cDNA libr...    44   1.8    1
(AE014823) Plasmodium falciparum 3D7 chromosome 14 section 8...    32   2.0    6
(CU041378) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    42   2.2    3
(AC202679) Macaca mulatta clone CH250-391L11, WORKING DRAFT ...    36   2.2    4
(DV746291) ID0AAG5CA03CM1 ID0AAG Acyrthosiphon pisum cDNA cl...    26   2.4    4
(CR848838) Zebrafish DNA sequence from clone CH211-192O7 in ...    36   2.6    3
(GE728427) CBUH1025.g1 B.anynana_wing.LCPP_2-10kb Bicyclus a...    30   2.7    3
(AC123513) Dictyostelium discoideum strain AX4 chromosome 2 ...    32   2.8    4
(AC068824) Homo sapiens chromosome 2 clone RP11-239E8 map 2,...    32   2.8    3
(AL034559) Plasmodium falciparum MAL3P7.                           32   2.8    5
(AC117080) Dictyostelium discoideum chromosome 2 map complem...    30   2.8    5
(AP009288) Solanum lycopersicum genomic DNA, chromosome 8, c...    34   3.1    6
(AM475837) Vitis vinifera contig VV78X127380.2, whole genome...    34   3.2    2
(AC187009) Canis lupus familiaris chromosome 20 clone XX-164...    38   3.4    2
(AX346323) Sequence 1394 from Patent WO0200928.                    32   3.5    4
(AC198562) Papio anubis clone RP41-209M14, WORKING DRAFT SEQ...    30   3.5    2
(AC135953) Macaca mulatta clone CH250-30N10, WORKING DRAFT S...    30   3.5    2
(AM427877) Vitis vinifera contig VV78X078999.8, whole genome...    40   3.5    2
(AC133069) Macaca mulatta clone CH250-15G12, WORKING DRAFT S...    30   3.5    2
(AC133074) Papio anubis clone RP41-4M9, WORKING DRAFT SEQUEN...    30   3.5    2
(AC147952) Papio anubis clone RP41-96M13, WORKING DRAFT SEQU...    30   3.5    2
(AC026535) Homo sapiens chromosome 1 clone RP11-368K17 map 1...    30   3.6    2
(AX345445) Sequence 516 from Patent WO0200928.                     36   3.6    3
(AC148816) Medicago truncatula chromosome 7 clone mth2-16i24...    34   3.6    2
(AC073173) Homo sapiens chromosome 10 clone RP11-183D3, comp...    30   3.6    2
(BX088547) Zebrafish DNA sequence from clone DKEY-238O14.          42   4.0    2
(AX346783) Sequence 1854 from Patent WO0200928.                    32   4.0    3
(EK362548) 1095469198132 Global-Ocean-Sampling_GS-31-01-01-1...    32   4.2    2
(CZ955948) 272415 Tomato EcoRI BAC Library Solanum lycopersi...    30   4.7    2
(EL922186) NY4Th2_69_D05.b1_A039 NY4 theronts Ichthyophthiri...    32   4.7    2
(EJ617379) 1092963030750 Global-Ocean-Sampling_GS-29-01-01-1...    30   4.7    2
(AC116920) Dictyostelium discoideum chromosome 2 map 4415041...    30   5.4    5
(DJ441087) Breast Cancer Biomarkers.                               38   5.4    4
(CS200138) Sequence 19 from Patent WO2005106044.                   38   5.4    4
(CU740085) Brassica rapa subsp. pekinensis clone KBrH016P07,...    42   5.6    3
(EI476866) PV_GBa0087M02.f PV_GBa Phaseolus vulgaris genomic...    30   6.0    3
(CU469537) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    42   6.5    2
(EU427344) Riptortus pedestris mitochondrion, complete genome.     38   6.8    3
(CR925738) Zebrafish DNA sequence from clone DKEY-164G12 in ...    34   6.9    3
(AX344566) Sequence 17 from Patent WO0200932.                      32   7.1    6
(CU302323) Zebrafish DNA sequence from clone DKEY-92C21.           42   7.2    1
(CR759907) Zebrafish DNA sequence from clone CH211-209J12.         42   7.2    1
(CR407594) Zebrafish DNA sequence from clone DKEY-122C11 in ...    42   7.2    1
(CR388363) Zebrafish DNA sequence from clone DKEY-254E13 in ...    42   7.2    1
(CR361561) Zebrafish DNA sequence from clone CH211-218K8 in ...    42   7.2    1
(CR356223) Zebrafish DNA sequence from clone DKEY-28K24.           42   7.2    1
(CR352243) Zebrafish DNA sequence from clone DKEYP-117H8 in ...    42   7.2    1
(BX927336) Zebrafish DNA sequence from clone CH211-215P11 in...    42   7.2    1
(BX890613) Zebrafish DNA sequence from clone DKEY-156K2 in l...    42   7.2    1
(BX664622) Zebrafish DNA sequence from clone DKEYP-90E1.           42   7.2    1
(BX649479) Zebrafish DNA sequence from clone CH211-187D1 in ...    42   7.2    1
(BX511066) Zebrafish DNA sequence from clone CH211-129P6 in ...    42   7.2    1
(BX469933) Zebrafish DNA sequence from clone CH211-207E19 in...    42   7.2    1
(BX465836) Zebrafish DNA sequence from clone CH211-59M15 in ...    42   7.2    1
(BX323072) Zebrafish DNA sequence from clone CH211-271G18.         42   7.2    1
(BX323006) Zebrafish DNA sequence from clone CH211-145H19 in...    42   7.2    1
(BX294653) Zebrafish DNA sequence from clone CH211-196H24 in...    42   7.2    1
(AC110269) Mus musculus chromosome 1, clone RP23-322P13, com...    42   7.2    1
(CU457803) S.lycopersicum DNA sequence from clone LE_HBa-91D...    42   7.2    1
(AC215420) Solanum lycopersicum chromosome 2 clone C02HBa020...    42   7.2    1
(AC189647) Brassica rapa subsp. pekinensis clone KBrS009G24,...    42   7.2    1
(EF173367) Aedes aegypti clone BAC 124C17, complete sequence.      42   7.2    1
(AL132990) Human chromosome 14 DNA sequence BAC R-262P9 of l...    42   7.2    1
(AL132708) Human chromosome 14 DNA sequence BAC R-349I1 of l...    42   7.2    1
(AJ329971) Homo sapiens genomic sequence surrounding NotI si...    42   7.2    1
(AC106707) Homo sapiens 3 BAC RP11-538P18 (Roswell Park Canc...    42   7.2    1
(AC147445) Gallus gallus chromosome UNK clone CH261-13H19, *...    42   7.2    1
(AC141759) Apis mellifera clone CH224-60D17, WORKING DRAFT S...    42   7.2    1
(CU861950) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    42   7.2    1
(AC068393) Homo sapiens chromosome 3 clone RP11-538P18 map 3...    42   7.2    1
(CU302228) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    42   7.2    1
(CU234165) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    42   7.2    1
(CT737157) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    42   7.2    1
(CR376752) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    42   7.2    1
(AC220195) Bos taurus clone CH240-365M24, WORKING DRAFT SEQU...    42   7.2    1
(AC164525) Bos taurus clone CH240-153P11, *** SEQUENCING IN ...    42   7.2    1
(AC012027) Homo sapiens chromosome 3 clone RP11-91L9, WORKIN...    42   7.2    1
(BH159043) ENTRB36TR Entamoeba histolytica Sheared DNA Entam...    42   7.2    1
(FH649777) CHO_OF4996xc04r1.ab1 CHO_OF4 Nicotiana tabacum ge...    42   7.2    1
(FH056476) CHO_OF3499xp03f1.ab1 CHO_OF3 Nicotiana tabacum ge...    42   7.2    1
(ET866165) CHO_OF211xl10r1.ab1 CHO_OF Nicotiana tabacum geno...    42   7.2    1
(AL737918) Danio rerio genomic clone DKEY-3P11, genomic surv...    42   7.2    1
(ED447699) AUAC-aaw75c02.b1 Ascaris suum whole genome shotgu...    42   7.2    1
(ED313218) AUAC-aap57b05.b1 Ascaris suum whole genome shotgu...    42   7.2    1
(ED257612) AUAC-aak56a10.b1 Ascaris suum whole genome shotgu...    42   7.2    1
(DU469268) 1098473589674 CHORI-243 Ovis aries genomic clone ...    42   7.2    1
(CU121194) Equus caballus GSS, BAC clone CH241-235C11, T7 en...    42   7.2    1
(CT338566) Sus scrofa genomic clone CH242-527E8, genomic sur...    42   7.2    1
(CT261198) Sus scrofa genomic clone PigE-72B17, genomic surv...    42   7.2    1
(BX240659) Danio rerio genomic clone DKEY-279I18, genomic su...    42   7.2    1
(BX230134) Danio rerio genomic clone DKEY-57M10, genomic sur...    42   7.2    1
(BX169726) Danio rerio genomic clone DKEY-170J20, genomic su...    42   7.2    1
(BX137100) Danio rerio genomic clone DKEY-92C21, genomic sur...    42   7.2    1
(BH760637) BMBAC315D12SP6_PSU Brugia malayi Genomic Bac Libr...    42   7.2    1
(DV750068) ID0AAH3CA01ZM1 ID0AAH Acyrthosiphon pisum cDNA cl...    42   7.2    1
(DV749108) ID0AAH15BC04ZM1 ID0AAH Acyrthosiphon pisum cDNA c...    42   7.2    1
(DV748684) ID0AAH13DH06ZM2 ID0AAH Acyrthosiphon pisum cDNA c...    42   7.2    1
(DT627961) EST1156710 Subtracted pine embryo library, Lib_B ...    42   7.2    1
(DR766816) ILLUMIGEN_MCQ_59020 Katze_MMTE Macaca mulatta cDN...    42   7.2    1
(DR715364) AGENCOURT_55163041 NIH_ZGC_7 Danio rerio cDNA clo...    42   7.2    1
(DN610743) EST963793 Subtracted pine embryo library, Lib_B P...    42   7.2    1
(CV839154) ID0ACC9DH08RM1 ID0ACC Acyrthosiphon pisum cDNA cl...    42   7.2    1
(CV839148) ID0ACC9DH02RM1 ID0ACC Acyrthosiphon pisum cDNA cl...    42   7.2    1
(CV837568) ID0ACC5CB02RM1 ID0ACC Acyrthosiphon pisum cDNA cl...    42   7.2    1
(CV835714) ID0ACC29AH11RM1 ID0ACC Acyrthosiphon pisum cDNA c...    42   7.2    1
(CV833172) ID0ACC22AE10RM1 ID0ACC Acyrthosiphon pisum cDNA c...    42   7.2    1
(CV832250) ID0ACC1CC08RM1 ID0ACC Acyrthosiphon pisum cDNA cl...    42   7.2    1
(CV831705) ID0ACC19AC09RM1 ID0ACC Acyrthosiphon pisum cDNA c...    42   7.2    1
(CV831589) ID0ACC18DA02RM1 ID0ACC Acyrthosiphon pisum cDNA c...    42   7.2    1
(CV830486) ID0ACC15CF09RM1 ID0ACC Acyrthosiphon pisum cDNA c...    42   7.2    1
(CV829995) ID0ACC14BC01RM1 ID0ACC Acyrthosiphon pisum cDNA c...    42   7.2    1
(CT602330) Danio rerio EST, clone ZF_mu_60m20 5'.                  42   7.2    1
(CO647915) ILLUMIGEN_MCQ_41128 Katze_MMPB2 Macaca mulatta cD...    42   7.2    1
(CF587715) USDA-FP_120400-010 Acyrthosiphon pisum, Pea Aphid...    42   7.2    1
(AI770280) SAL3.G04 Black Tiger Shrimp Whole Cephalothorax U...    42   7.2    1
(BU377868) 603807641F1 CSEQCHN74 Gallus gallus cDNA clone Ch...    42   7.2    1
(FF323480) 280419563 Pea aphid whole body normalized full le...    42   7.2    1
(FF309866) 279375420 Pea aphid whole body normalized full le...    42   7.2    1
(FF309294) 279374887 Pea aphid whole body normalized full le...    42   7.2    1
(FF307182) 279368185 Pea aphid whole body normalized full le...    42   7.2    1
(EX649272) 256729084 Pea aphid whole body normalized full le...    42   7.2    1
(EX628197) 255448495 Pea aphid whole body normalized full le...    42   7.2    1
(EX620430) 255411956 Pea aphid whole body normalized full le...    42   7.2    1
(EX617958) 255401260 Pea aphid whole body normalized full le...    42   7.2    1
(EX613180) 255383469 Pea aphid whole body normalized full le...    42   7.2    1
(BX908798) Parachlamydia-related symbiont UWE25, complete ge...    42   7.2    1
(AY450399) Campylobacter fetus strain 85-388 surface layer p...    42   7.2    1
(AM425836) Vitis vinifera contig VV78X148685.6, whole genome...    34   7.4    3
(AC154466) Mus musculus BAC clone RP24-148D22 from 14, compl...    32   7.5    4
(AC170719) Atelerix albiventris clone LB4-363L19, WORKING DR...    38   7.7    3
(ED721455) GM_WBb0074B21.r GM_WBb Glycine max genomic clone ...    24   8.8    4
(DB734756) Apis mellifera head cDNA, RIKEN full-length enric...    36   8.9    2
(AF097182) Oryza sativa (indica cultivar-group) protein phos...    38   8.9    2
(AM439532) Vitis vinifera contig VV78X224369.5, whole genome...    32   9.0    4
(AC178460) Strongylocentrotus purpuratus clone R3-3039N16, W...    36   9.0    4
(CS468836) Sequence 27 from Patent EP1748080.                      30   9.1    5
(CS468835) Sequence 26 from Patent EP1748080.                      30   9.1    5
(CS419313) Sequence 27 from Patent WO2006094836.                   30   9.1    5
(CS419312) Sequence 26 from Patent WO2006094836.                   30   9.1    5
(GC697486) Sequence 12731 from patent US 6812339.                  34   9.1    4
(DQ366728) Uncultured Prochlorococcus marinus clone HF10-88H...    38   9.1    3
(GC698004) Sequence 13249 from patent US 6812339.                  34   9.1    4
(CS604787) Sequence 3773 from Patent WO2007039234.                 32   9.6    3
(CS603139) Sequence 2125 from Patent WO2007039234.                 32   9.6    3
(AF466146) Melipona bicolor mitochondrial genome, partial se...    28   9.6    5
(DB728844) Apis mellifera head cDNA, RIKEN full-length enric...    36   9.7    2
(AC184331) Strongylocentrotus purpuratus clone R3-3037M7, WO...    34   9.8    3
(AP009180) Candidatus Carsonella ruddii PV DNA, complete gen...    32   9.8    6
(FB571381) Sequence 248 from Patent EP1865317.                     30   9.9    6
(FB571325) Sequence 192 from Patent EP1865317.                     30   9.9    6

>(AU072191) Dictyostelium discoideum slug cDNA, clone SSD634.
          Length = 198

 Score =  155 bits (78), Expect(3) = 2e-46
 Identities = 78/78 (100%)
 Strand = Plus / Plus


Query: 120 aaatttaaatttaaagtctcaccacatcccagttatttagaaataatttgtaaaattaga 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120 aaatttaaatttaaagtctcaccacatcccagttatttagaaataatttgtaaaattaga 179


Query: 180 aatattaaatcaatttca 197
           ||||||||||||||||||
Sbjct: 180 aatattaaatcaatttca 197

 Score = 48.1 bits (24), Expect(3) = 2e-46
 Identities = 24/24 (100%)
 Strand = Plus / Plus


Query: 85  ttccttttgtttaaagaatttaaa 108
           ||||||||||||||||||||||||
Sbjct: 85  ttccttttgtttaaagaatttaaa 108

 Score = 34.2 bits (17), Expect(3) = 2e-46
 Identities = 17/17 (100%)
 Strand = Plus / Plus


Query: 1  attttattttattattg 17
          |||||||||||||||||
Sbjct: 1  attttattttattattg 17

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 102105510
Number of Hits to DB: 238,217,534
Number of extensions: 19700772
Number of successful extensions: 6733999
Number of sequences better than 10.0: 225
Length of query: 197
Length of database: 101,790,757,118
Length adjustment: 23
Effective length of query: 174
Effective length of database: 99,442,330,388
Effective search space: 17302965487512
Effective search space used: 17302965487512
X1: 11 (21.8 bits)
S2: 21 (42.1 bits)
protein update 2009. 7.31
Homology vs Protein 
Query= Contig-U04897-1 (Contig-U04897-1Q) /CSM_Contig/Contig-U04897-1Q.Seq.d
         (197 letters)

Database: nrp_A
           3,268,448 sequences; 1,061,185,681 total letters

Searching..................................................done

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3268448
Number of Hits to DB: 97,750,498
Number of extensions: 548603
Number of successful extensions: 970
Number of sequences better than 10.0: 0
Number of HSP's gapped: 970
Number of HSP's successfully gapped: 0
Length of query: 65
Length of database: 1,061,185,681
Length adjustment: 37
Effective length of query: 28
Effective length of database: 940,253,105
Effective search space: 26327086940
Effective search space used: 26327086940
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 26 (14.6 bits)
PSORT 

 psg: 0.66  gvh: 0.27  alm: 0.47  top: 0.53  tms: 0.00  mit: 0.28  mip: 0.00
 nuc: 0.20  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 60.0 %: nuclear
	 24.0 %: cytoplasmic
	  8.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: plasma membrane

>> prediction for Contig-U04897-1 is nuc
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 1
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0