Contig-U04870-1 |
Contig ID |
Contig-U04870-1 |
Contig update |
2002. 9.13 |
Contig sequence |
|
Gap |
no gap |
Contig length |
1019 |
Chromosome number (1..6, M) |
4 |
Chromosome length |
5430582 |
Start point |
17482 |
End point |
16457 |
Strand (PLUS/MINUS) |
MINUS |
Number of clones |
2 |
Number of EST |
2 |
Link to clone list |
U04870 |
List of clone(s) |
|
Translated Amino Acid sequence |
|
Translated Amino Acid sequence (All Frames) |
|
own update |
2004. 6.10 |
Homology vs CSM-cDNA |
|
dna update |
2009. 7. 4 |
Homology vs DNA |
Query= Contig-U04870-1 (Contig-U04870-1Q) /CSM_Contig/Contig-U04870-1Q.Seq.d (1019 letters)
Database: ddbj_A 102,105,510 sequences; 101,790,757,118 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value N
(C94166) Dictyostelium discoideum slug cDNA, clone SSG487. 515 0.0 2 (AU037351) Dictyostelium discoideum slug cDNA, clone SSD514. 466 e-180 2 (AU073249) Dictyostelium discoideum slug cDNA, clone SSG487. 476 e-130 1 (CX712340) RTPQ1_1_H05.g1_A032 Roots treated with paraquat P... 46 1e-08 3 (DR682288) EST1072363 Normalized pine embryo library, Lib_D ... 46 1e-08 3 (DR685885) EST1075962 Normalized pine embryo library, Lib_D ... 46 1e-08 3 (CF390660) RTDR2_20_F07.g1_A021 Loblolly pine roots recoveri... 46 1e-08 3 (DR688056) EST1078139 Normalized pine embryo library, Lib_D ... 46 1e-08 3 (DR117964) RTMG1_10_G04.b1_A029 Roots minus magnesium Pinus ... 46 1e-08 3 (CF670208) RTCNT1_48_F05.g1_A029 Root control Pinus taeda cD... 46 2e-08 3 (DT630897) EST1145828 Normalized pine embryo library, Lib_D ... 46 2e-08 3 (CF479483) RTWW3_22_D05.g1_A022 Well-watered loblolly pine r... 46 5e-05 2 (BQ697049) NXPV_048_F08_F NXPV (Nsf Xylem Planings wood Vert... 40 6e-05 3 (BM133565) NXLV_008_G12_F NXLV (Nsf Xylem Late wood Vertical... 40 0.002 2 (FK143748) XABT176170.b1 Gateway compatible cien cDNA librar... 42 0.002 2 (AF525030) Catharanthus roseus farnesyltransferase/type I ge... 56 0.003 1 (EX279322) 1566421_5_C19_078 PY06 Carica papaya cDNA, mRNA s... 54 0.011 1 (EX247685) PY04100X1H09.f1 PY04 Carica papaya cDNA, mRNA seq... 54 0.011 1 (EX244147) PY03092X1G07.f1 PY03 Carica papaya cDNA, mRNA seq... 54 0.011 1 (GE668001) CBUC9692.b1 B.anynana_abdomen_nosize Bicyclus any... 34 0.017 3 (DQ396875) Scenedesmus obliquus strain UTEX 393 chloroplast,... 36 0.018 10 (BQ696401) NXPV_040_G03_F NXPV (Nsf Xylem Planings wood Vert... 42 0.030 2 (DR118047) RTMG1_10_G04.g1_A029 Roots minus magnesium Pinus ... 46 0.038 2 (DU883416) 392080 Tomato HindIII BAC Library Solanum lycoper... 52 0.043 1 (EX921484) iy90f08.g1 Cycas ovule - normalized (NYBG) Cycas ... 52 0.043 1 (EY401970) pOP-CNH01372_EST_C_1_pSK_SK CNH (Oil Palm Non-Emb... 34 0.054 3 (FF389755) MOOD949TF MOO Vigna unguiculata cDNA 5', mRNA seq... 38 0.082 2 (EH633360) EST4467 LK04 Laupala kohalensis cDNA clone 106102... 38 0.090 3 (BQ698136) NXPV_064_H11_F NXPV (Nsf Xylem Planings wood Vert... 40 0.097 2 (CP000976) Borrelia duttonii Ly, complete genome. 36 0.12 16 (FK154641) XABT183027.b1 Gateway compatible cien cDNA librar... 38 0.14 2 (DR531755) WS02736.C21_F21 SS-IL-A-FL-14 Picea sitchensis cD... 46 0.14 2 (EX369894) GQ03218.B7_A10 GQ032 - Shoot tip (Normalized libr... 46 0.16 2 (EX381944) GQ03304.B7_C17 GQ033 - Terminal leader (Normalize... 46 0.16 2 (DR568927) WS02623.BR_D14 WS-PP-N-A-12 Picea glauca cDNA clo... 46 0.17 2 (EX370953) GQ03220.B7_O20 GQ032 - Shoot tip (Normalized libr... 46 0.17 2 (EX311742) GQ02803.B7_F05 GQ028 - Cambium / phloem scrapping... 46 0.17 2 (EX385680) GQ03309.B7_E19 GQ033 - Terminal leader (Normalize... 46 0.17 2 (EX323246) GQ02820.B7_F01 GQ028 - Cambium / phloem scrapping... 46 0.17 2 (EX373838) GQ03228.B7_N08 GQ032 - Shoot tip (Normalized libr... 46 0.18 2 (EX370026) GQ03218.B7_G05 GQ032 - Shoot tip (Normalized libr... 46 0.18 2 (EX388017) GQ03312.B7_K06 GQ033 - Terminal leader (Normalize... 46 0.18 2 (EX308086) GQ01307.T3_A21 GQ013 - Elongating ROOTS tips - sa... 46 0.18 2 (EX392287) GQ03322.B7_D19 GQ033 - Terminal leader (Normalize... 46 0.18 2 (EX373187) GQ03227.B7_B06 GQ032 - Shoot tip (Normalized libr... 46 0.18 2 (EX314238) GQ02807.B7_A02 GQ028 - Cambium / phloem scrapping... 46 0.19 2 (EF086798) Picea sitchensis clone WS02736_F21 unknown mRNA. 46 0.23 2 (AC157382) Bos taurus clone CH240-74M20, WORKING DRAFT SEQUE... 48 0.26 3 (AC203630) Homo sapiens FOSMID clone ABC10-45505500C8 from c... 42 0.41 2 (FK052754) XABT119505.b1 Gateway compatible cien cDNA librar... 38 0.47 2 (FK126211) XABT165593.b1 Gateway compatible cien cDNA librar... 38 0.49 2 (FF696368) XABT107124.fwd Gateway compatible cien cDNA libra... 38 0.50 2 (FK162355) XABT187660.b1 Gateway compatible cien cDNA librar... 38 0.51 2 (EK142220) 1095454143232 Global-Ocean-Sampling_GS-31-01-01-1... 42 0.67 2 (DX524302) GH_MBb0035F02f GH_MBb Gossypium hirsutum genomic ... 48 0.67 1 (DT559151) EST1069791 GH_TMO Gossypium hirsutum cDNA, mRNA s... 48 0.67 1 (DT550246) EST1060886 GH_TMO Gossypium hirsutum cDNA, mRNA s... 48 0.67 1 (DT549040) EST1059680 GH_TMO Gossypium hirsutum cDNA, mRNA s... 48 0.67 1 (DT548430) EST1059070 GH_TMO Gossypium hirsutum cDNA, mRNA s... 48 0.67 1 (DT544118) EST1054758 GH_TMO Gossypium hirsutum cDNA, mRNA s... 48 0.67 1 (AI726669) BNLGHi5789 Six-day Cotton fiber Gossypium hirsutu... 48 0.67 1 (BQ402841) GA__Ed0051H09f Gossypium arboreum 7-10 dpa fiber ... 48 0.67 1 (BG439958) GA__Ea0005G04f Gossypium arboreum 7-10 dpa fiber ... 48 0.67 1 (EX265247) 1445747_5_C17_077 PY06 Carica papaya cDNA, mRNA s... 48 0.67 1 (CP000721) Clostridium beijerinckii NCIMB 8052, complete gen... 48 0.67 1 (AC159066) Bos taurus clone CH240-54A21, WORKING DRAFT SEQUE... 36 1.3 2 (AC168180) Bos taurus clone CH240-211D11, WORKING DRAFT SEQU... 36 1.4 2 (AC218735) Bos taurus clone CH240-296A24, WORKING DRAFT SEQU... 42 1.7 3 (AM463504) Vitis vinifera contig VV78X184182.2, whole genome... 32 1.7 2 (EJ788408) 1093017365509 Global-Ocean-Sampling_GS-30-02-01-1... 36 1.8 2 (AE017308) Mycoplasma mobile 163K complete genome. 38 1.9 15 (FE419901) CBTW4179.fwd CBTW_Daphnia_pulex_Chosen_One_Librar... 38 1.9 2 (AC151353) Xenopus (Silurana) tropicalis clone ISB-4M1, comp... 46 2.6 1 (AC196500) Pan troglodytes BAC clone CH251-292F18 from chrom... 46 2.6 1 (AC190400) Pan troglodytes BAC clone CH251-651K12 from chrom... 46 2.6 1 (AC091877) Homo sapiens chromosome 5 clone CTD-3061E14, comp... 46 2.6 1 (AC005588) Homo sapiens PAC clone RP5-1161G23 from 7, comple... 46 2.6 1 (AC146063) Pan troglodytes chromosome UNK clone RP43-58K2, *... 46 2.6 1 (AC175349) Bos taurus clone CH240-159I16, WORKING DRAFT SEQU... 46 2.6 1 (AC168145) Bos taurus clone CH240-200P3, WORKING DRAFT SEQUE... 46 2.6 1 (FH052056) CHO_OF3326xf05r1.ab1 CHO_OF3 Nicotiana tabacum ge... 46 2.6 1 (DU240622) 1098574179339 CHORI-243 Ovis aries genomic clone ... 46 2.6 1 (CR796261) GR0AAA14BA05RM1 INRA BAC Bos taurus genomic clone... 46 2.6 1 (ES259803) WS0382.C21_B17 SS-B-23 Picea sitchensis cDNA clon... 46 2.6 1 (ES253770) WS03721.C21_E23 SS-B-N-22 Picea sitchensis cDNA c... 46 2.6 1 (EL400381) CFFS11708.b1_H23.ab1 CFF(LMS) safflower Carthamus... 46 2.6 1 (EH770613) CNSM3234.b1_D17.ab1 CNS(LMS) yellow starthistle C... 46 2.6 1 (EH766573) CNSM12861.b1_J23.ab1 CNS(LMS) yellow starthistle ... 46 2.6 1 (EH737632) CNMS11114.b1_D20.ab1 CNM(LMS) spotted knapweed Ce... 46 2.6 1 (EH736214) CNMM9300.b1_G21.ab1 CNM(LMS) spotted knapweed Cen... 46 2.6 1 (EH727969) CNMM14415.b1_M04.ab1 CNM(LMS) spotted knapweed Ce... 46 2.6 1 (EH727336) CNMM13773.b1_J12.ab1 CNM(LMS) spotted knapweed Ce... 46 2.6 1 (EB123215) 020829AARA011087HT (AARA) Royal Gala partially se... 46 2.6 1 (DW054184) CLLX6769.b1_A14.ab1 CLL(XYZ) lettuce saligna Lact... 46 2.6 1 (DT040195) Mdrtp1001M04.g1 Apple_EST_Mdrtp Malus x domestica... 46 2.6 1 (DR561787) WS02623.C21.1_D14 WS-PP-N-A-12 Picea glauca cDNA ... 46 2.6 1 (DR513599) WS02736.CR_F21 SS-IL-A-FL-14 Picea sitchensis cDN... 46 2.6 1 (CO541351) Mdfrt3039j13.y1 Mdfrt Malus x domestica cDNA clon... 46 2.6 1 (CO369774) RTK1_54_A09.b1_A029 Roots minus potassium Pinus t... 46 2.6 1 (CO228141) WS0013.B21_N24 WS-ES-A-1 Picea glauca cDNA clone ... 46 2.6 1 (CO197401) GEO1_6_C03.b1_A029 Root gravitropism April 2003 t... 46 2.6 1 (CN579867) Mdfw2036d08.y1 Mdfw Malus x domestica cDNA clone ... 46 2.6 1 (CF390567) RTDR2_20_F07.b1_A021 Loblolly pine roots recoveri... 46 2.6 1 (BJ869320) Marchantia polymorpha cDNA clone:lwb43j01, 5' end. 46 2.6 1 (BJ861079) Marchantia polymorpha cDNA clone:lwb20p07, 5' end. 46 2.6 1 (BJ852075) Marchantia polymorpha cDNA clone:lwa3g19, 5' end. 46 2.6 1 (GE608789) CCPX5777.b1_A05.ab1 CCP(UWX) Globe Artichoke Cyna... 46 2.6 1 (GE604125) CCPX12221.b1_J08.ab1 CCP(UWX) Globe Artichoke Cyn... 46 2.6 1 (GE600248) CCPW860.b1_G23.ab1 CCP(UWX) Globe Artichoke Cynar... 46 2.6 1 (EY487820) CBBP16042.fwd CBBP Hirudo medicinalis hermaphrodi... 46 2.6 1 (EX388380) GQ03312.SP6_K06 GQ033 - Terminal leader (Normaliz... 46 2.6 1 (EX386041) GQ03309.SP6_E19 GQ033 - Terminal leader (Normaliz... 46 2.6 1 (EX382314) GQ03304.SP6_C17 GQ033 - Terminal leader (Normaliz... 46 2.6 1 (EX360855) GQ03203.SP6_A07 GQ032 - Shoot tip (Normalized lib... 46 2.6 1 (EX360508) GQ03203.B7_A07 GQ032 - Shoot tip (Normalized libr... 46 2.6 1 (EX323619) GQ02820.SP6_F01 GQ028 - Cambium / phloem scrappin... 46 2.6 1 (EX314565) GQ02807.SP6_A02 GQ028 - Cambium / phloem scrappin... 46 2.6 1 (EX312011) GQ02803.SP6_F05 GQ028 - Cambium / phloem scrappin... 46 2.6 1 (ES870824) WS02833.CR_C07 SS-IB-A-FL-13 Picea sitchensis cDN... 46 2.6 1 (ES790007) 060419AARA011087CT (AARA) Royal Gala partially se... 46 2.6 1 (CS468864) Sequence 55 from Patent EP1748080. 36 2.9 9 (CS419341) Sequence 55 from Patent WO2006094836. 36 2.9 9 (GE661439) CBUF8154.b1 B.anynana_abdomen_2-10kb Bicyclus any... 34 3.1 3 (CP000716) Thermosipho melanesiensis BI429, complete genome. 38 3.9 22 (AC004793) Arabidopsis thaliana chromosome 1 BAC F28K20 sequ... 40 5.7 3 (BX666053) Pinus pinaster root EST, clone RN09B02 similar to... 34 5.9 2 (AC212901) Homo sapiens FOSMID clone ABC9-43957900C13 from c... 40 6.0 2 (AC234295) Solanum tuberosum chromosome 6 clone RHPOTKEY030E... 34 6.3 7 (AJ503753) Medicago truncatula EST, clone mtgmadc120037h04. 36 6.4 2 (GE343923) MEUA679TF JCVI-MT2 Medicago truncatula cDNA 5', m... 36 6.4 2 (CD082668) MA3-9999U-M336-G08-U.B MA3-0001 Schistosoma manso... 36 7.0 2 (CZ176207) MIAA-3H18c.g1 Meloidogyne incognita BAC end seque... 38 7.5 2 (AM044997) Schistosoma mansoni lung schistosomulum EST, clon... 36 7.5 2 (EV262641) MTYEY20TF JCVI-MT1 Medicago truncatula cDNA 5', m... 36 7.9 2 (ER378960) 1094338536388 Global-Ocean-Sampling_GS-34-01-01-1... 34 8.2 2 (AC170681) Bos taurus clone CH240-224D23, WORKING DRAFT SEQU... 42 8.2 6 (CK532973) rswgb0_000764.y1 swg Bombyx mori cDNA, mRNA seque... 32 8.4 3 (EK318462) 1095462420929 Global-Ocean-Sampling_GS-31-01-01-1... 40 8.8 2 (CV689693) sjs5-011_C10_sjs5-011C10-T3 SJS Schistosoma japon... 32 9.1 3 (DV918169) LB02912.CR_C23 GC_BGC-29 Bos taurus cDNA clone IM... 42 9.6 2 (AV405165) Bombyx mori cDNA clone:prgv0886. 32 9.8 3
>(C94166) Dictyostelium discoideum slug cDNA, clone SSG487. Length = 612
Score = 515 bits (260), Expect(2) = 0.0 Identities = 260/260 (100%) Strand = Plus / Plus
Query: 636 atttgctgtcaatcatatacgtcatagtccaaataatgaatcaccttggagttatcttaa 695 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 232 atttgctgtcaatcatatacgtcatagtccaaataatgaatcaccttggagttatcttaa 291
Query: 696 aggtttattcaaaggtcaaaagatttccactatttatccttcccttttggatatactatt 755 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 292 aggtttattcaaaggtcaaaagatttccactatttatccttcccttttggatatactatt 351
Query: 756 ggaaatgaaatcaaagtatattggttgttctcatgttaactctatcattttagatattta 815 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 352 ggaaatgaaatcaaagtatattggttgttctcatgttaactctatcattttagatattta 411
Query: 816 tcaagaacaaaatactaaaatttctttagaaaattctttaaatatttgtaaattattatc 875 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 412 tcaagaacaaaatactaaaatttctttagaaaattctttaaatatttgtaaattattatc 471
Query: 876 agaaacaattgatccaattc 895 |||||||||||||||||||| Sbjct: 472 agaaacaattgatccaattc 491
Score = 460 bits (232), Expect(2) = 0.0 Identities = 234/235 (99%) Strand = Plus / Plus
Query: 401 gaaagaattcctcagtggtgtattattggaggatgctaaaaactatcatgcatggtcaca 460 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 gaaagaattcctcagtggtgtattattggaggatgctaaaaactatcatgcatggtcaca 60
Query: 461 tagacaatggntattaaaaacctatcgtgattggaatggtgaattggcaatggtcgataa 520 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61 tagacaatggttattaaaaacctatcgtgattggaatggtgaattggcaatggtcgataa 120
Query: 521 attattatcgttggatcatcgtaataattcagtttggaatcaccgttttttcgtcatttc 580 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 121 attattatcgttggatcatcgtaataattcagtttggaatcaccgttttttcgtcatttc 180
Query: 581 aaatttaaatccatctcctttccctttgtctttgatcgaacgtgaagttgaattt 635 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 181 aaatttaaatccatctcctttccctttgtctttgatcgaacgtgaagttgaattt 235
Lambda K H 1.37 0.711 1.31
Matrix: blastn matrix:1 -3 Number of Sequences: 102105510 Number of Hits to DB: 1,231,528,107 Number of extensions: 73051124 Number of successful extensions: 5901505 Number of sequences better than 10.0: 141 Length of query: 1019 Length of database: 101,790,757,118 Length adjustment: 24 Effective length of query: 995 Effective length of database: 99,340,224,878 Effective search space: 98843523753610 Effective search space used: 98843523753610 X1: 11 (21.8 bits) S2: 22 (44.1 bits)
|
protein update |
2009. 7.31 |
Homology vs Protein |
Query= Contig-U04870-1 (Contig-U04870-1Q) /CSM_Contig/Contig-U04870-1Q.Seq.d (1019 letters)
Database: nrp_A 3,268,448 sequences; 1,061,185,681 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
BC129222_1(BC129222|pid:none) Danio rerio zgc:158397, mRNA (cDNA... 202 3e-63 A41013(A41013)protein farnesyltransferase (EC 2.5.1.-) alpha cha... 205 6e-63 (Q61239) RecName: Full=Protein farnesyltransferase/geranylgerany... 202 1e-61 BC157425_1(BC157425|pid:none) Xenopus laevis hypothetical protei... 199 2e-61 BC085758_1(BC085758|pid:none) Rattus norvegicus farnesyltransfer... 201 2e-61 (P49354) RecName: Full=Protein farnesyltransferase/geranylgerany... 200 3e-61 (Q04631) RecName: Full=Protein farnesyltransferase/geranylgerany... 199 4e-61 AF525030_1(AF525030|pid:none) Catharanthus roseus farnesyltransf... 202 6e-60 AK060892_1(AK060892|pid:none) Oryza sativa Japonica Group cDNA c... 190 2e-56 EF086798_1(EF086798|pid:none) Picea sitchensis clone WS02736_F21... 184 1e-53 AB201555_1(AB201555|pid:none) Bombyx mori FNTA mRNA for farnesyl... 194 2e-53 (O24304) RecName: Full=Protein farnesyltransferase/geranylgerany... 182 3e-52 (Q9LX33) RecName: Full=Protein farnesyltransferase/geranylgerany... 186 2e-51 BC112662_1(BC112662|pid:none) Bos taurus farnesyltransferase, CA... 202 2e-50 AK340099_1(AK340099|pid:none) Acyrthosiphon pisum ACYPI008214 mR... 182 1e-49 BT036588_1(BT036588|pid:none) Zea mays full-length cDNA clone ZM... 180 3e-49 AM439248_6(AM439248|pid:none) Vitis vinifera contig VV79X007207.... 173 3e-48 AB083372_1(AB083372|pid:none) Entamoeba histolytica EhFTalpha ge... 157 8e-41 AF038615_3(AF038615|pid:none) Caenorhabditis elegans cosmid R02D... 151 2e-40 AY815227_1(AY815227|pid:none) Schistosoma japonicum SJCHGC05785 ... 161 3e-40 CP001329_518(CP001329|pid:none) Micromonas sp. RCC299 chromosome... 159 5e-40 DQ863313_1(DQ863313|pid:none) Penicillium marneffei RAM2-like pr... 145 1e-39 AP007157_702(AP007157|pid:none) Aspergillus oryzae RIB40 genomic... 139 4e-38 BC037295_1(BC037295|pid:none) Homo sapiens farnesyltransferase, ... 160 7e-38 CR382128_637(CR382128|pid:none) Yarrowia lipolytica strain CLIB1... 126 2e-37 CU640366_993(CU640366|pid:none) Podospora anserina genomic DNA c... 142 8e-37 AK123002_1(AK123002|pid:none) Homo sapiens cDNA FLJ16794 fis, cl... 114 1e-35 CR382138_479(CR382138|pid:none) Debaryomyces hansenii strain CBS... 125 4e-34 FN392319_194(FN392319|pid:none) Pichia pastoris GS115 chromosome... 122 2e-33 (P29703) RecName: Full=Protein farnesyltransferase/geranylgerany... 125 2e-31 (Q9Y765) RecName: Full=Protein farnesyltransferase/geranylgerany... 124 5e-31 AB092841_1(AB092841|pid:none) Candida glabrata RAM2, CDC16 genes... 120 2e-30 CR380958_421(CR380958|pid:none) Candida glabrata strain CBS138 c... 120 2e-30 FM992688_882(FM992688|pid:none) Candida dubliniensis CD36 chromo... 122 3e-30 CU928167_19(CU928167|pid:none) Kluyveromyces thermotolerans stra... 119 6e-30 CU928176_21(CU928176|pid:none) Zygosaccharomyces rouxii strain C... 120 4e-29 AE016816_298(AE016816|pid:none) Ashbya gossypii (= Eremothecium ... 112 6e-28 CP000496_875(CP000496|pid:none) Pichia stipitis CBS 6054 chromos... 108 6e-28 AB171159_1(AB171159|pid:none) Macaca fascicularis brain cDNA clo... 121 3e-26 AF513631_1(AF513631|pid:none) Talaromyces emersonii geranylgeran... 110 1e-22 CR940352_687(CR940352|pid:none) Theileria annulata strain Ankara... 95 3e-18 BT035588_1(BT035588|pid:none) Zea mays full-length cDNA clone ZM... 70 2e-16 CP000590_238(CP000590|pid:none) Ostreococcus lucimarinus CCE9901... 77 1e-14 CR382131_563(CR382131|pid:none) Yarrowia lipolytica strain CLIB1... 75 1e-13 CR954210_242(CR954210|pid:none) Ostreococcus tauri strain OTTH05... 72 1e-12 BC012214_1(BC012214|pid:none) Mus musculus Rab geranylgeranyl tr... 73 2e-11 AK146917_1(AK146917|pid:none) Mus musculus 17 days embryo kidney... 73 2e-11 AF127660_1(AF127660|pid:none) Mus musculus strain C57BL/6J RAB g... 73 2e-11 (Q9JHK4) RecName: Full=Geranylgeranyl transferase type-2 subunit... 73 2e-11 BC124249_1(BC124249|pid:none) Danio rerio zgc:153107, mRNA (cDNA... 73 2e-11 (Q5EA80) RecName: Full=Geranylgeranyl transferase type-2 subunit... 71 7e-11 CR541797_1(CR541797|pid:none) Homo sapiens full open reading fra... 70 1e-10 (Q5NVK5) RecName: Full=Geranylgeranyl transferase type-2 subunit... 70 1e-10 (Q92696) RecName: Full=Geranylgeranyl transferase type-2 subunit... 70 1e-10 (Q55DQ4) RecName: Full=Geranylgeranyl transferase type-2 subunit... 69 3e-10 AY811441_1(AY811441|pid:none) Schistosoma japonicum SJCHGC04459 ... 68 6e-10 FM992688_378(FM992688|pid:none) Candida dubliniensis CD36 chromo... 67 8e-10 AL035356_31(AL035356|pid:none) Arabidopsis thaliana DNA chromoso... 67 1e-09 AY072209_1(AY072209|pid:none) Arabidopsis thaliana putative Rab ... 67 1e-09 AM465666_3(AM465666|pid:none) Vitis vinifera contig VV78X057834.... 66 2e-09 (O93829) RecName: Full=Geranylgeranyl transferase type-2 subunit... 65 3e-09 CR380956_40(CR380956|pid:none) Candida glabrata strain CBS138 ch... 65 3e-09 AB161972_1(AB161972|pid:none) Entamoeba histolytica EhGGTIIa gen... 64 8e-09 CP000500_286(CP000500|pid:none) Pichia stipitis CBS 6054 chromos... 64 8e-09 EU970986_1(EU970986|pid:none) Zea mays clone 355312 rab geranylg... 63 1e-08 S48301(S48301;A39655;S56803;S19037) geranylgeranyl transferase (... 63 2e-08 CP001331_382(CP001331|pid:none) Micromonas sp. RCC299 chromosome... 62 2e-08 AM920437_716(AM920437|pid:none) Penicillium chrysogenum Wisconsi... 62 2e-08 BC077401_1(BC077401|pid:none) Xenopus laevis Rab geranylgeranylt... 59 2e-07 CU928173_453(CU928173|pid:none) Zygosaccharomyces rouxii strain ... 59 2e-07 AM270079_50(AM270079|pid:none) Aspergillus niger contig An04c018... 58 5e-07 AF100664_1(AF100664|pid:none) Caenorhabditis elegans cosmid M57,... 55 5e-06 CR954214_21(CR954214|pid:none) Ostreococcus tauri strain OTTH059... 54 7e-06 CU638743_388(CU638743|pid:none) Podospora anserina genomic DNA c... 54 1e-05 AY735507_1(AY735507|pid:none) Arabidopsis thaliana chromosome 1 ... 50 2e-04 AL590442_104(AL590442|pid:none) chromosome II of strain GB-M1 of... 49 2e-04 AB016871_10(AB016871|pid:none) Arabidopsis thaliana genomic DNA,... 49 2e-04 AM910996_591(AM910996|pid:none) Plasmodium knowlesi strain H chr... 49 2e-04 AC004122_12(AC004122|pid:none) Arabidopsis thaliana chromosome I... 49 4e-04 AC096673_44(AC096673|pid:none) Trypanosoma brucei chromosome 3 c... 48 5e-04 AY735509_1(AY735509|pid:none) Arabidopsis thaliana chromosome 1 ... 47 8e-04 AY735508_1(AY735508|pid:none) Arabidopsis thaliana chromosome 1 ... 47 8e-04 (A5GJR7) RecName: Full=1,4-alpha-glucan-branching enzyme; ... 47 0.001 DQ440467_1(DQ440467|pid:none) Aedes aegypti clone AET-6725 Rab-p... 47 0.001 CP000951_793(CP000951|pid:none) Synechococcus sp. PCC 7002, comp... 45 0.003 AY880032_1(AY880032|pid:none) Plasmodium falciparum clone Dd2 pr... 45 0.004 CP000300_576(CP000300|pid:none) Methanococcoides burtonii DSM 62... 45 0.005 CR940353_799(CR940353|pid:none) Theileria annulata strain Ankara... 44 0.012 (Q7U646) RecName: Full=1,4-alpha-glucan-branching enzyme; ... 44 0.012 AE014298_385(AE014298|pid:none) Drosophila melanogaster chromoso... 44 0.012 AM443513_5(AM443513|pid:none) Vitis vinifera contig VV78X057535.... 43 0.016 AK073525_1(AK073525|pid:none) Oryza sativa Japonica Group cDNA c... 43 0.020 AK106529_1(AK106529|pid:none) Oryza sativa Japonica Group cDNA c... 42 0.026 AE014187_401(AE014187|pid:none) Plasmodium falciparum 3D7 chromo... 42 0.035 CP001291_1331(CP001291|pid:none) Cyanothece sp. PCC 7424, comple... 42 0.035 AL162412_1(AL162412|pid:none) Human DNA sequence from clone RP11... 41 0.059 AF461504_1(AF461504|pid:none) Trypanosoma cruzi strain Tulahuen ... 41 0.059 CP000254_1402(CP000254|pid:none) Methanospirillum hungatei JF-1,... 41 0.059 (Q3AYE2) RecName: Full=1,4-alpha-glucan-branching enzyme; ... 41 0.059 (A2C142) RecName: Full=1,4-alpha-glucan-branching enzyme; ... 41 0.077 AE010300_2266(AE010300|pid:none) Leptospira interrogans serovar ... 40 0.10 AP009552_3058(AP009552|pid:none) Microcystis aeruginosa NIES-843... 40 0.13 AF461505_1(AF461505|pid:none) Trypanosoma cruzi strain Tulahuen ... 40 0.13 AM502247_221(AM502247|pid:none) Leishmania infantum chromosome 29. 40 0.13 AM502251_105(AM502251|pid:none) Leishmania infantum chromosome 33. 40 0.13 (Q31BV0) RecName: Full=1,4-alpha-glucan-branching enzyme; ... 40 0.13 CP001037_5817(CP001037|pid:none) Nostoc punctiforme PCC 73102, c... 40 0.17 CP000743_917(CP000743|pid:none) Methanococcus aeolicus Nankai-3,... 40 0.17 CP000828_2756(CP000828|pid:none) Acaryochloris marina MBIC11017,... 39 0.22 (A2BQ65) RecName: Full=1,4-alpha-glucan-branching enzyme; ... 39 0.38 AM910994_637(AM910994|pid:none) Plasmodium knowlesi strain H chr... 38 0.50 AE000666_69(AE000666|pid:none) Methanothermobacter thermautotrop... 38 0.50 CP000080_202(CP000080|pid:none) Leishmania major strain Friedlin... 38 0.50 AF461507_1(AF461507|pid:none) Leishmania major strain Friedlin f... 38 0.50 (A1L3L1) RecName: Full=Protein prenyltransferase alpha subunit r... 38 0.50 (A5GSG4) RecName: Full=1,4-alpha-glucan-branching enzyme; ... 38 0.65 CP000951_2520(CP000951|pid:none) Synechococcus sp. PCC 7002, com... 38 0.65 CP000867_209(CP000867|pid:none) Methanococcus maripaludis C6, co... 37 1.5 AL162412_2(AL162412|pid:none) Human DNA sequence from clone RP11... 37 1.5 CP000780_2022(CP000780|pid:none) Candidatus Methanoregula boonei... 37 1.5 (Q7Z6K3) RecName: Full=Protein prenyltransferase alpha subunit r... 37 1.5 BC053622_1(BC053622|pid:none) Homo sapiens protein prenyltransfe... 37 1.5 AE010299_1572(AE010299|pid:none) Methanosarcina acetivorans str.... 36 1.9 AK293444_1(AK293444|pid:none) Homo sapiens cDNA FLJ53971 complet... 36 1.9 (Q5U2N8) RecName: Full=Tetratricopeptide repeat protein 26; ... 36 1.9 T46452(T46452)hypothetical protein DKFZp434I042.1 - human (fragm... 36 1.9 (Q8BS45) RecName: Full=Tetratricopeptide repeat protein 26; ... 36 1.9 CP000609_669(CP000609|pid:none) Methanococcus maripaludis C5, co... 36 1.9 (A3KPW7) RecName: Full=Protein prenyltransferase alpha subunit r... 36 1.9 AM494966_192(AM494966|pid:none) Leishmania braziliensis chromoso... 36 2.5 AE010299_1324(AE010299|pid:none) Methanosarcina acetivorans str.... 36 2.5 CP000117_1549(CP000117|pid:none) Anabaena variabilis ATCC 29413,... 35 3.2 AC004218_24(AC004218|pid:none) Arabidopsis thaliana chromosome 2... 35 3.2 (A4III8) RecName: Full=Tetratricopeptide repeat protein 26; ... 35 3.2 CP001229_225(CP001229|pid:none) Sulfurihydrogenibium azorense Az... 35 3.2 CP000350_1206(CP000350|pid:none) Leptospira borgpetersenii serov... 35 3.2 CP000828_625(CP000828|pid:none) Acaryochloris marina MBIC11017, ... 35 3.2 CP000882_129(CP000882|pid:none) Hemiselmis andersenii chromosome... 35 3.2 AK300807_1(AK300807|pid:none) Homo sapiens cDNA FLJ55883 complet... 35 4.2 AK295092_1(AK295092|pid:none) Homo sapiens cDNA FLJ60534 complet... 35 4.2 CP000099_3513(CP000099|pid:none) Methanosarcina barkeri str. Fus... 35 4.2 CP000099_270(CP000099|pid:none) Methanosarcina barkeri str. Fusa... 35 5.5 CP000096_480(CP000096|pid:none) Pelodictyon luteolum DSM 273, co... 35 5.5 BC124321_1(BC124321|pid:none) Danio rerio hypothetical LOC561820... 35 5.5 CP000847_1158(CP000847|pid:none) Rickettsia akari str. Hartford,... 35 5.5 CR940352_241(CR940352|pid:none) Theileria annulata strain Ankara... 35 5.5 AF063866_148(AF063866|pid:none) Melanoplus sanguinipes entomopox... 34 7.2 AP009552_361(AP009552|pid:none) Microcystis aeruginosa NIES-843 ... 34 9.4 CP000562_60(CP000562|pid:none) Methanoculleus marisnigri JR1, co... 34 9.4 (P54032) RecName: Full=30S ribosomal protein S24e; &B64349(B643... 34 9.4 AL035475_26(AL035475|pid:none) Plasmodium falciparum MAL4P2. &A... 34 9.4
>BC129222_1(BC129222|pid:none) Danio rerio zgc:158397, mRNA (cDNA clone MGC:158397 IMAGE:7067462), complete cds. Length = 374
Score = 202 bits (515), Expect(2) = 3e-63 Identities = 95/208 (45%), Positives = 144/208 (69%), Gaps = 1/208 (0%) Frame = +3
Query: 15 GYVPFSKRPEWSDVKPLAQDDGPHPICPILYSEVFKDKMNYFRAILKSKEKSLRVLDLLE 194 GY+ + R EW+D++P+ QDDGP+P+ I YSE F D + FRA+LK+ E+S R L Sbjct: 40 GYIFYRDRKEWADLEPVPQDDGPNPVVKIAYSEKFTDVFDMFRALLKNDERSERAFALTA 99
Query: 195 EVIQENPSNYTIWYYRREVLKAIEQDETIEYDIQQEMNLLNDMGETDPKNYQIWNHRRFI 374 E I N +NYT+W+YRR +L+A+++ D+++EMN + + E PKNYQ+W+HRR + Sbjct: 100 EAIDLNAANYTVWHYRRVLLQALKK------DLREEMNYITAIIEDQPKNYQVWHHRRMV 153
Query: 375 VEKYIG-SDKKEFLSGVLLEDAKNYHAWSHRQWXLKTYRDWNGELAMVDKLLSLDHRNNS 551 VE +D+ +F++ +L +DAKNYHAW HRQW ++ Y+ W+GEL V++LL D RNNS Sbjct: 154 VEWLSDPADELQFVAEILSQDAKNYHAWQHRQWVIQEYKLWDGELEYVEELLEEDVRNNS 213
Query: 552 VWNHRFFVISNLNPSPFPLSLIEREVEF 635 WN R FVIS+ + P ++++REV++ Sbjct: 214 AWNQRHFVISHTSGYSDP-AILQREVQY 240
Score = 63.9 bits (154), Expect(2) = 3e-63 Identities = 31/103 (30%), Positives = 63/103 (61%), Gaps = 10/103 (9%) Frame = +1
Query: 637 FAVNHIRHSPNNESPWSYLKGLFKGQKISTIYPSLLDILLEMKSKYIGCS--HVNSIILD 810 + + I+ +P+NES W+YLK + + +S+ YP LL+ ++E++ CS ++ + ++D Sbjct: 240 YTLEQIKKAPHNESAWNYLKAILQDGGLSS-YPGLLEQVMELQDT---CSSPYLTAFLVD 295
Query: 811 IYQE--------QNTKISLENSLNICKLLSETIDPIHKNYWNF 915 +Y++ + + +L +L +CKLL+E +D I + YWN+ Sbjct: 296 LYEDALESNNSSHDQQETLSKALELCKLLAEDLDTIRREYWNY 338
Lambda K H 0.318 0.134 0.401
Gapped Lambda K H 0.267 0.0410 0.140
Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3268448 Number of Hits to DB: 1,516,280,056 Number of extensions: 29296207 Number of successful extensions: 77424 Number of sequences better than 10.0: 151 Number of HSP's gapped: 76724 Number of HSP's successfully gapped: 273 Length of query: 339 Length of database: 1,061,185,681 Length adjustment: 129 Effective length of query: 210 Effective length of database: 639,555,889 Effective search space: 134306736690 Effective search space used: 134306736690 Neighboring words threshold: 12 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 32 (16.9 bits)
|
PSORT |
|
VS (DIR, S) |
0 |
VH (FL, L) |
0 |
VF (FL, S) |
0 |
AH (FL, L) |
0 |
AF (FL, S) |
0 |
SL (DIR, L) |
0 |
SS (DIR, S) |
2 |
SH (FL, L) |
0 |
SF (FL, S) |
0 |
CH (FL, L) |
0 |
CF (FL, S) |
0 |
FCL (DIR, L) |
0 |
FC (DIR, S) |
0 |
FC-IC (SUB) |
0 |