Contig-U04870-1
Contig ID Contig-U04870-1
Contig update 2002. 9.13
Contig sequence
>Contig-U04870-1 (Contig-U04870-1Q) /CSM_Contig/Contig-U04870-1Q.Seq.d
GTGAAGAGGATGATGGTTATGTGCCATTTTCAAAAAGACCAGAATGGAGT
GATGTAAAACCTTTGGCACAAGATGATGGACCACATCCAATTTGCCCAAT
TTTATATTCAGAAGTTTTTAAGGATAAAATGAATTATTTTAGAGCAATAT
TAAAATCTAAAGAGAAATCACTTAGAGTATTAGATTTATTAGAGGAAGTT
ATTCAAGAGAATCCATCAAATTATACCATATGGTATTATAGAAGGGAAGT
ATTGAAAGCCATTGAACAAGATGAAACTATTGAATATGATATTCAACAAG
AGATGAACTTATTGAATGATATGGGAGAAACAGATCCAAAGAATTATCAA
ATTTGGAATCATAGACGTTTTATAGTTGAAAAATATATTGGTAGTGATAA
GAAAGAATTCCTCAGTGGTGTATTATTGGAGGATGCTAAAAACTATCATG
CATGGTCACATAGACAATGGNTATTAAAAACCTATCGTGATTGGAATGGT
GAATTGGCAATGGTCGATAAATTATTATCGTTGGATCATCGTAATAATTC
AGTTTGGAATCACCGTTTTTTCGTCATTTCAAATTTAAATCCATCTCCTT
TCCCTTTGTCTTTGATCGAACGTGAAGTTGAATTTATTTGCTGTCAATCA
TATACGTCATAGTCCAAATAATGAATCACCTTGGAGTTATCTTAAAGGTT
TATTCAAAGGTCAAAAGATTTCCACTATTTATCCTTCCCTTTTGGATATA
CTATTGGAAATGAAATCAAAGTATATTGGTTGTTCTCATGTTAACTCTAT
CATTTTAGATATTTATCAAGAACAAAATACTAAAATTTCTTTAGAAAATT
CTTTAAATATTTGTAAATTATTATCAGAAACAATTGATCCAATTCATAAA
AATTATTGGAATTTTAAATATAATACAATTTCAGATCAATTGAAATTAAT
TAATTAAAAAAAAAAAAAAAAATTATTATTTTAAATTAAAGAAATAAAAA
TTATATTTAAAAAAACAAA

Gap no gap
Contig length 1019
Chromosome number (1..6, M) 4
Chromosome length 5430582
Start point 17482
End point 16457
Strand (PLUS/MINUS) MINUS
Number of clones 2
Number of EST 2
Link to clone list U04870
List of clone(s)

est1=SSG487E,1,1007
est2=SSD514Z,528,1020
Translated Amino Acid sequence
EEDDGYVPFSKRPEWSDVKPLAQDDGPHPICPILYSEVFKDKMNYFRAILKSKEKSLRVL
DLLEEVIQENPSNYTIWYYRREVLKAIEQDETIEYDIQQEMNLLNDMGETDPKNYQIWNH
RRFIVEKYIGSDKKEFLSGVLLEDAKNYHAWSHRQWXLKTYRDWNGELAMVDKLLSLDHR
NNSVWNHRFFVISNLNPSPFPLSLIEREVEFICCQSYTS*sk**itlels*rfiqrskdf
hylsfpfgytigneikvywlfsc*lyhfrylsrtky*nffrkffkyl*iiirnn*sns*k
llef*i*ynfrsiein*lkkkkkiiiln*rnknyi*knk


Translated Amino Acid sequence (All Frames)
Frame A:
vkrmmvmchfqkdqngvm*nlwhkmmdhiqfaqfyiqkflrik*iileqy*nlkrnhley
*iy*rklfkrihqiipygiiegky*kplnkmkllnmifnkr*ty*miwekqiqriikfgi
idvl*lknilvvirknssvvyywrmlktimhghidngy*kpivigmvnwqwsinyyrwii
viiqfgitvfssfqi*ihllslcl*snvklnlfavnhirhspnnespwsylkglfkgqki
stiypslldillemkskyigcshvnsiildiyqeqntkislenslnickllsetidpihk
nywnfkyntisdqlklin*kkkkkllf*ikeikiifkkt


Frame B:
*rg*wlcaifkktrme*cktfgtr*wttsnlpnfifrsf*g*nelf*sniki*reit*si
rfirgsysresiklyhmvl*kgsiesh*tr*ny*i*ystrdelie*ygrnrskelsnles
*tfys*kiyw***eripqwciiggc*klscmvt*tmxiknls*lew*igngr*iiivgss
**fslespffrhfkfksisfpfvfdrt*s*iyllsiiyvivqimnhlgvilkvyskvkrf
plfilpfwiyywk*nqsilvvlmltlsf*ifiknkilkfl*kil*ifvnyyqkqliqfik
iigilniiqfqin*n*likkkkknyyfklkk*klylkkq


Frame C:
EEDDGYVPFSKRPEWSDVKPLAQDDGPHPICPILYSEVFKDKMNYFRAILKSKEKSLRVL
DLLEEVIQENPSNYTIWYYRREVLKAIEQDETIEYDIQQEMNLLNDMGETDPKNYQIWNH
RRFIVEKYIGSDKKEFLSGVLLEDAKNYHAWSHRQWXLKTYRDWNGELAMVDKLLSLDHR
NNSVWNHRFFVISNLNPSPFPLSLIEREVEFICCQSYTS*sk**itlels*rfiqrskdf
hylsfpfgytigneikvywlfsc*lyhfrylsrtky*nffrkffkyl*iiirnn*sns*k
llef*i*ynfrsiein*lkkkkkiiiln*rnknyi*knk


own update 2004. 6.10
Homology vs CSM-cDNA
Query= Contig-U04870-1 (Contig-U04870-1Q)
/CSM_Contig/Contig-U04870-1Q.Seq.d
(1019 letters)

Database: CSM
6905 sequences; 5,674,871 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U04870-1 (Contig-U04870-1Q) /CSM_Contig/Conti... 1887 0.0
Contig-U11007-1 (Contig-U11007-1Q) /CSM_Contig/Conti... 38 0.018
Contig-U10968-1 (Contig-U10968-1Q) /CSM_Contig/Conti... 36 0.072
Contig-U10536-1 (Contig-U10536-1Q) /CSM_Contig/Conti... 36 0.072
Contig-U08170-1 (Contig-U08170-1Q) /CSM_Contig/Conti... 36 0.072
Contig-U04886-1 (Contig-U04886-1Q) /CSM_Contig/Conti... 36 0.072
Contig-U14883-1 (Contig-U14883-1Q) /CSM_Contig/Conti... 34 0.28
Contig-U13915-1 (Contig-U13915-1Q) /CSM_Contig/Conti... 34 0.28
Contig-U12512-1 (Contig-U12512-1Q) /CSM_Contig/Conti... 34 0.28
Contig-U11717-1 (Contig-U11717-1Q) /CSM_Contig/Conti... 34 0.28

>Contig-U04870-1 (Contig-U04870-1Q) /CSM_Contig/Contig-U04870-1Q.Seq.d
Length = 1019

Score = 1887 bits (952), Expect = 0.0
Identities = 955/955 (100%)
Strand = Plus / Plus


Query: 1 gtgaagaggatgatggttatgtgccattttcaaaaagaccagaatggagtgatgtaaaac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gtgaagaggatgatggttatgtgccattttcaaaaagaccagaatggagtgatgtaaaac 60


Query: 61 ctttggcacaagatgatggaccacatccaatttgcccaattttatattcagaagttttta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ctttggcacaagatgatggaccacatccaatttgcccaattttatattcagaagttttta 120


Query: 121 aggataaaatgaattattttagagcaatattaaaatctaaagagaaatcacttagagtat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 aggataaaatgaattattttagagcaatattaaaatctaaagagaaatcacttagagtat 180


Query: 181 tagatttattagaggaagttattcaagagaatccatcaaattataccatatggtattata 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tagatttattagaggaagttattcaagagaatccatcaaattataccatatggtattata 240


Query: 241 gaagggaagtattgaaagccattgaacaagatgaaactattgaatatgatattcaacaag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 gaagggaagtattgaaagccattgaacaagatgaaactattgaatatgatattcaacaag 300


Query: 301 agatgaacttattgaatgatatgggagaaacagatccaaagaattatcaaatttggaatc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 agatgaacttattgaatgatatgggagaaacagatccaaagaattatcaaatttggaatc 360


Query: 361 atagacgttttatagttgaaaaatatattggtagtgataagaaagaattcctcagtggtg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 atagacgttttatagttgaaaaatatattggtagtgataagaaagaattcctcagtggtg 420


Query: 421 tattattggaggatgctaaaaactatcatgcatggtcacatagacaatggntattaaaaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tattattggaggatgctaaaaactatcatgcatggtcacatagacaatggntattaaaaa 480


Query: 481 cctatcgtgattggaatggtgaattggcaatggtcgataaattattatcgttggatcatc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cctatcgtgattggaatggtgaattggcaatggtcgataaattattatcgttggatcatc 540


Query: 541 gtaataattcagtttggaatcaccgttttttcgtcatttcaaatttaaatccatctcctt 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gtaataattcagtttggaatcaccgttttttcgtcatttcaaatttaaatccatctcctt 600


Query: 601 tccctttgtctttgatcgaacgtgaagttgaatttatttgctgtcaatcatatacgtcat 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 tccctttgtctttgatcgaacgtgaagttgaatttatttgctgtcaatcatatacgtcat 660


Query: 661 agtccaaataatgaatcaccttggagttatcttaaaggtttattcaaaggtcaaaagatt 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 agtccaaataatgaatcaccttggagttatcttaaaggtttattcaaaggtcaaaagatt 720


Query: 721 tccactatttatccttcccttttggatatactattggaaatgaaatcaaagtatattggt 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 tccactatttatccttcccttttggatatactattggaaatgaaatcaaagtatattggt 780


Query: 781 tgttctcatgttaactctatcattttagatatttatcaagaacaaaatactaaaatttct 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tgttctcatgttaactctatcattttagatatttatcaagaacaaaatactaaaatttct 840


Query: 841 ttagaaaattctttaaatatttgtaaattattatcagaaacaattgatccaattcataaa 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 841 ttagaaaattctttaaatatttgtaaattattatcagaaacaattgatccaattcataaa 900


Query: 901 aattattggaattttaaatataatacaatttcagatcaattgaaattaattaatt 955
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 901 aattattggaattttaaatataatacaatttcagatcaattgaaattaattaatt 955


>Contig-U11007-1 (Contig-U11007-1Q) /CSM_Contig/Contig-U11007-1Q.Seq.d
Length = 1800

Score = 38.2 bits (19), Expect = 0.018
Identities = 19/19 (100%)
Strand = Plus / Plus


Query: 573 gtcatttcaaatttaaatc 591
|||||||||||||||||||
Sbjct: 1176 gtcatttcaaatttaaatc 1194


>Contig-U10968-1 (Contig-U10968-1Q) /CSM_Contig/Contig-U10968-1Q.Seq.d
Length = 2025

Score = 36.2 bits (18), Expect = 0.072
Identities = 18/18 (100%)
Strand = Plus / Plus


Query: 289 atattcaacaagagatga 306
||||||||||||||||||
Sbjct: 1290 atattcaacaagagatga 1307


Database: CSM
Posted date: Jun 9, 2004 7:35 PM
Number of letters in database: 5,674,871
Number of sequences in database: 6905

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 15,777
Number of Sequences: 6905
Number of extensions: 15777
Number of successful extensions: 1693
Number of sequences better than 10.0: 182
length of query: 1019
length of database: 5,674,871
effective HSP length: 16
effective length of query: 1003
effective length of database: 5,564,391
effective search space: 5581084173
effective search space used: 5581084173
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2009. 7. 4
Homology vs DNA
Query= Contig-U04870-1 (Contig-U04870-1Q) /CSM_Contig/Contig-U04870-1Q.Seq.d
(1019 letters)

Database: ddbj_A
102,105,510 sequences; 101,790,757,118 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(C94166) Dictyostelium discoideum slug cDNA, clone SSG487. 515 0.0 2
(AU037351) Dictyostelium discoideum slug cDNA, clone SSD514. 466 e-180 2
(AU073249) Dictyostelium discoideum slug cDNA, clone SSG487. 476 e-130 1
(CX712340) RTPQ1_1_H05.g1_A032 Roots treated with paraquat P... 46 1e-08 3
(DR682288) EST1072363 Normalized pine embryo library, Lib_D ... 46 1e-08 3
(DR685885) EST1075962 Normalized pine embryo library, Lib_D ... 46 1e-08 3
(CF390660) RTDR2_20_F07.g1_A021 Loblolly pine roots recoveri... 46 1e-08 3
(DR688056) EST1078139 Normalized pine embryo library, Lib_D ... 46 1e-08 3
(DR117964) RTMG1_10_G04.b1_A029 Roots minus magnesium Pinus ... 46 1e-08 3
(CF670208) RTCNT1_48_F05.g1_A029 Root control Pinus taeda cD... 46 2e-08 3
(DT630897) EST1145828 Normalized pine embryo library, Lib_D ... 46 2e-08 3
(CF479483) RTWW3_22_D05.g1_A022 Well-watered loblolly pine r... 46 5e-05 2
(BQ697049) NXPV_048_F08_F NXPV (Nsf Xylem Planings wood Vert... 40 6e-05 3
(BM133565) NXLV_008_G12_F NXLV (Nsf Xylem Late wood Vertical... 40 0.002 2
(FK143748) XABT176170.b1 Gateway compatible cien cDNA librar... 42 0.002 2
(AF525030) Catharanthus roseus farnesyltransferase/type I ge... 56 0.003 1
(EX279322) 1566421_5_C19_078 PY06 Carica papaya cDNA, mRNA s... 54 0.011 1
(EX247685) PY04100X1H09.f1 PY04 Carica papaya cDNA, mRNA seq... 54 0.011 1
(EX244147) PY03092X1G07.f1 PY03 Carica papaya cDNA, mRNA seq... 54 0.011 1
(GE668001) CBUC9692.b1 B.anynana_abdomen_nosize Bicyclus any... 34 0.017 3
(DQ396875) Scenedesmus obliquus strain UTEX 393 chloroplast,... 36 0.018 10
(BQ696401) NXPV_040_G03_F NXPV (Nsf Xylem Planings wood Vert... 42 0.030 2
(DR118047) RTMG1_10_G04.g1_A029 Roots minus magnesium Pinus ... 46 0.038 2
(DU883416) 392080 Tomato HindIII BAC Library Solanum lycoper... 52 0.043 1
(EX921484) iy90f08.g1 Cycas ovule - normalized (NYBG) Cycas ... 52 0.043 1
(EY401970) pOP-CNH01372_EST_C_1_pSK_SK CNH (Oil Palm Non-Emb... 34 0.054 3
(FF389755) MOOD949TF MOO Vigna unguiculata cDNA 5', mRNA seq... 38 0.082 2
(EH633360) EST4467 LK04 Laupala kohalensis cDNA clone 106102... 38 0.090 3
(BQ698136) NXPV_064_H11_F NXPV (Nsf Xylem Planings wood Vert... 40 0.097 2
(CP000976) Borrelia duttonii Ly, complete genome. 36 0.12 16
(FK154641) XABT183027.b1 Gateway compatible cien cDNA librar... 38 0.14 2
(DR531755) WS02736.C21_F21 SS-IL-A-FL-14 Picea sitchensis cD... 46 0.14 2
(EX369894) GQ03218.B7_A10 GQ032 - Shoot tip (Normalized libr... 46 0.16 2
(EX381944) GQ03304.B7_C17 GQ033 - Terminal leader (Normalize... 46 0.16 2
(DR568927) WS02623.BR_D14 WS-PP-N-A-12 Picea glauca cDNA clo... 46 0.17 2
(EX370953) GQ03220.B7_O20 GQ032 - Shoot tip (Normalized libr... 46 0.17 2
(EX311742) GQ02803.B7_F05 GQ028 - Cambium / phloem scrapping... 46 0.17 2
(EX385680) GQ03309.B7_E19 GQ033 - Terminal leader (Normalize... 46 0.17 2
(EX323246) GQ02820.B7_F01 GQ028 - Cambium / phloem scrapping... 46 0.17 2
(EX373838) GQ03228.B7_N08 GQ032 - Shoot tip (Normalized libr... 46 0.18 2
(EX370026) GQ03218.B7_G05 GQ032 - Shoot tip (Normalized libr... 46 0.18 2
(EX388017) GQ03312.B7_K06 GQ033 - Terminal leader (Normalize... 46 0.18 2
(EX308086) GQ01307.T3_A21 GQ013 - Elongating ROOTS tips - sa... 46 0.18 2
(EX392287) GQ03322.B7_D19 GQ033 - Terminal leader (Normalize... 46 0.18 2
(EX373187) GQ03227.B7_B06 GQ032 - Shoot tip (Normalized libr... 46 0.18 2
(EX314238) GQ02807.B7_A02 GQ028 - Cambium / phloem scrapping... 46 0.19 2
(EF086798) Picea sitchensis clone WS02736_F21 unknown mRNA. 46 0.23 2
(AC157382) Bos taurus clone CH240-74M20, WORKING DRAFT SEQUE... 48 0.26 3
(AC203630) Homo sapiens FOSMID clone ABC10-45505500C8 from c... 42 0.41 2
(FK052754) XABT119505.b1 Gateway compatible cien cDNA librar... 38 0.47 2
(FK126211) XABT165593.b1 Gateway compatible cien cDNA librar... 38 0.49 2
(FF696368) XABT107124.fwd Gateway compatible cien cDNA libra... 38 0.50 2
(FK162355) XABT187660.b1 Gateway compatible cien cDNA librar... 38 0.51 2
(EK142220) 1095454143232 Global-Ocean-Sampling_GS-31-01-01-1... 42 0.67 2
(DX524302) GH_MBb0035F02f GH_MBb Gossypium hirsutum genomic ... 48 0.67 1
(DT559151) EST1069791 GH_TMO Gossypium hirsutum cDNA, mRNA s... 48 0.67 1
(DT550246) EST1060886 GH_TMO Gossypium hirsutum cDNA, mRNA s... 48 0.67 1
(DT549040) EST1059680 GH_TMO Gossypium hirsutum cDNA, mRNA s... 48 0.67 1
(DT548430) EST1059070 GH_TMO Gossypium hirsutum cDNA, mRNA s... 48 0.67 1
(DT544118) EST1054758 GH_TMO Gossypium hirsutum cDNA, mRNA s... 48 0.67 1
(AI726669) BNLGHi5789 Six-day Cotton fiber Gossypium hirsutu... 48 0.67 1
(BQ402841) GA__Ed0051H09f Gossypium arboreum 7-10 dpa fiber ... 48 0.67 1
(BG439958) GA__Ea0005G04f Gossypium arboreum 7-10 dpa fiber ... 48 0.67 1
(EX265247) 1445747_5_C17_077 PY06 Carica papaya cDNA, mRNA s... 48 0.67 1
(CP000721) Clostridium beijerinckii NCIMB 8052, complete gen... 48 0.67 1
(AC159066) Bos taurus clone CH240-54A21, WORKING DRAFT SEQUE... 36 1.3 2
(AC168180) Bos taurus clone CH240-211D11, WORKING DRAFT SEQU... 36 1.4 2
(AC218735) Bos taurus clone CH240-296A24, WORKING DRAFT SEQU... 42 1.7 3
(AM463504) Vitis vinifera contig VV78X184182.2, whole genome... 32 1.7 2
(EJ788408) 1093017365509 Global-Ocean-Sampling_GS-30-02-01-1... 36 1.8 2
(AE017308) Mycoplasma mobile 163K complete genome. 38 1.9 15
(FE419901) CBTW4179.fwd CBTW_Daphnia_pulex_Chosen_One_Librar... 38 1.9 2
(AC151353) Xenopus (Silurana) tropicalis clone ISB-4M1, comp... 46 2.6 1
(AC196500) Pan troglodytes BAC clone CH251-292F18 from chrom... 46 2.6 1
(AC190400) Pan troglodytes BAC clone CH251-651K12 from chrom... 46 2.6 1
(AC091877) Homo sapiens chromosome 5 clone CTD-3061E14, comp... 46 2.6 1
(AC005588) Homo sapiens PAC clone RP5-1161G23 from 7, comple... 46 2.6 1
(AC146063) Pan troglodytes chromosome UNK clone RP43-58K2, *... 46 2.6 1
(AC175349) Bos taurus clone CH240-159I16, WORKING DRAFT SEQU... 46 2.6 1
(AC168145) Bos taurus clone CH240-200P3, WORKING DRAFT SEQUE... 46 2.6 1
(FH052056) CHO_OF3326xf05r1.ab1 CHO_OF3 Nicotiana tabacum ge... 46 2.6 1
(DU240622) 1098574179339 CHORI-243 Ovis aries genomic clone ... 46 2.6 1
(CR796261) GR0AAA14BA05RM1 INRA BAC Bos taurus genomic clone... 46 2.6 1
(ES259803) WS0382.C21_B17 SS-B-23 Picea sitchensis cDNA clon... 46 2.6 1
(ES253770) WS03721.C21_E23 SS-B-N-22 Picea sitchensis cDNA c... 46 2.6 1
(EL400381) CFFS11708.b1_H23.ab1 CFF(LMS) safflower Carthamus... 46 2.6 1
(EH770613) CNSM3234.b1_D17.ab1 CNS(LMS) yellow starthistle C... 46 2.6 1
(EH766573) CNSM12861.b1_J23.ab1 CNS(LMS) yellow starthistle ... 46 2.6 1
(EH737632) CNMS11114.b1_D20.ab1 CNM(LMS) spotted knapweed Ce... 46 2.6 1
(EH736214) CNMM9300.b1_G21.ab1 CNM(LMS) spotted knapweed Cen... 46 2.6 1
(EH727969) CNMM14415.b1_M04.ab1 CNM(LMS) spotted knapweed Ce... 46 2.6 1
(EH727336) CNMM13773.b1_J12.ab1 CNM(LMS) spotted knapweed Ce... 46 2.6 1
(EB123215) 020829AARA011087HT (AARA) Royal Gala partially se... 46 2.6 1
(DW054184) CLLX6769.b1_A14.ab1 CLL(XYZ) lettuce saligna Lact... 46 2.6 1
(DT040195) Mdrtp1001M04.g1 Apple_EST_Mdrtp Malus x domestica... 46 2.6 1
(DR561787) WS02623.C21.1_D14 WS-PP-N-A-12 Picea glauca cDNA ... 46 2.6 1
(DR513599) WS02736.CR_F21 SS-IL-A-FL-14 Picea sitchensis cDN... 46 2.6 1
(CO541351) Mdfrt3039j13.y1 Mdfrt Malus x domestica cDNA clon... 46 2.6 1
(CO369774) RTK1_54_A09.b1_A029 Roots minus potassium Pinus t... 46 2.6 1
(CO228141) WS0013.B21_N24 WS-ES-A-1 Picea glauca cDNA clone ... 46 2.6 1
(CO197401) GEO1_6_C03.b1_A029 Root gravitropism April 2003 t... 46 2.6 1
(CN579867) Mdfw2036d08.y1 Mdfw Malus x domestica cDNA clone ... 46 2.6 1
(CF390567) RTDR2_20_F07.b1_A021 Loblolly pine roots recoveri... 46 2.6 1
(BJ869320) Marchantia polymorpha cDNA clone:lwb43j01, 5' end. 46 2.6 1
(BJ861079) Marchantia polymorpha cDNA clone:lwb20p07, 5' end. 46 2.6 1
(BJ852075) Marchantia polymorpha cDNA clone:lwa3g19, 5' end. 46 2.6 1
(GE608789) CCPX5777.b1_A05.ab1 CCP(UWX) Globe Artichoke Cyna... 46 2.6 1
(GE604125) CCPX12221.b1_J08.ab1 CCP(UWX) Globe Artichoke Cyn... 46 2.6 1
(GE600248) CCPW860.b1_G23.ab1 CCP(UWX) Globe Artichoke Cynar... 46 2.6 1
(EY487820) CBBP16042.fwd CBBP Hirudo medicinalis hermaphrodi... 46 2.6 1
(EX388380) GQ03312.SP6_K06 GQ033 - Terminal leader (Normaliz... 46 2.6 1
(EX386041) GQ03309.SP6_E19 GQ033 - Terminal leader (Normaliz... 46 2.6 1
(EX382314) GQ03304.SP6_C17 GQ033 - Terminal leader (Normaliz... 46 2.6 1
(EX360855) GQ03203.SP6_A07 GQ032 - Shoot tip (Normalized lib... 46 2.6 1
(EX360508) GQ03203.B7_A07 GQ032 - Shoot tip (Normalized libr... 46 2.6 1
(EX323619) GQ02820.SP6_F01 GQ028 - Cambium / phloem scrappin... 46 2.6 1
(EX314565) GQ02807.SP6_A02 GQ028 - Cambium / phloem scrappin... 46 2.6 1
(EX312011) GQ02803.SP6_F05 GQ028 - Cambium / phloem scrappin... 46 2.6 1
(ES870824) WS02833.CR_C07 SS-IB-A-FL-13 Picea sitchensis cDN... 46 2.6 1
(ES790007) 060419AARA011087CT (AARA) Royal Gala partially se... 46 2.6 1
(CS468864) Sequence 55 from Patent EP1748080. 36 2.9 9
(CS419341) Sequence 55 from Patent WO2006094836. 36 2.9 9
(GE661439) CBUF8154.b1 B.anynana_abdomen_2-10kb Bicyclus any... 34 3.1 3
(CP000716) Thermosipho melanesiensis BI429, complete genome. 38 3.9 22
(AC004793) Arabidopsis thaliana chromosome 1 BAC F28K20 sequ... 40 5.7 3
(BX666053) Pinus pinaster root EST, clone RN09B02 similar to... 34 5.9 2
(AC212901) Homo sapiens FOSMID clone ABC9-43957900C13 from c... 40 6.0 2
(AC234295) Solanum tuberosum chromosome 6 clone RHPOTKEY030E... 34 6.3 7
(AJ503753) Medicago truncatula EST, clone mtgmadc120037h04. 36 6.4 2
(GE343923) MEUA679TF JCVI-MT2 Medicago truncatula cDNA 5', m... 36 6.4 2
(CD082668) MA3-9999U-M336-G08-U.B MA3-0001 Schistosoma manso... 36 7.0 2
(CZ176207) MIAA-3H18c.g1 Meloidogyne incognita BAC end seque... 38 7.5 2
(AM044997) Schistosoma mansoni lung schistosomulum EST, clon... 36 7.5 2
(EV262641) MTYEY20TF JCVI-MT1 Medicago truncatula cDNA 5', m... 36 7.9 2
(ER378960) 1094338536388 Global-Ocean-Sampling_GS-34-01-01-1... 34 8.2 2
(AC170681) Bos taurus clone CH240-224D23, WORKING DRAFT SEQU... 42 8.2 6
(CK532973) rswgb0_000764.y1 swg Bombyx mori cDNA, mRNA seque... 32 8.4 3
(EK318462) 1095462420929 Global-Ocean-Sampling_GS-31-01-01-1... 40 8.8 2
(CV689693) sjs5-011_C10_sjs5-011C10-T3 SJS Schistosoma japon... 32 9.1 3
(DV918169) LB02912.CR_C23 GC_BGC-29 Bos taurus cDNA clone IM... 42 9.6 2
(AV405165) Bombyx mori cDNA clone:prgv0886. 32 9.8 3

>(C94166) Dictyostelium discoideum slug cDNA, clone SSG487.
Length = 612

Score = 515 bits (260), Expect(2) = 0.0
Identities = 260/260 (100%)
Strand = Plus / Plus


Query: 636 atttgctgtcaatcatatacgtcatagtccaaataatgaatcaccttggagttatcttaa 695
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 232 atttgctgtcaatcatatacgtcatagtccaaataatgaatcaccttggagttatcttaa 291


Query: 696 aggtttattcaaaggtcaaaagatttccactatttatccttcccttttggatatactatt 755
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 aggtttattcaaaggtcaaaagatttccactatttatccttcccttttggatatactatt 351


Query: 756 ggaaatgaaatcaaagtatattggttgttctcatgttaactctatcattttagatattta 815
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 ggaaatgaaatcaaagtatattggttgttctcatgttaactctatcattttagatattta 411


Query: 816 tcaagaacaaaatactaaaatttctttagaaaattctttaaatatttgtaaattattatc 875
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 tcaagaacaaaatactaaaatttctttagaaaattctttaaatatttgtaaattattatc 471


Query: 876 agaaacaattgatccaattc 895
||||||||||||||||||||
Sbjct: 472 agaaacaattgatccaattc 491

Score = 460 bits (232), Expect(2) = 0.0
Identities = 234/235 (99%)
Strand = Plus / Plus


Query: 401 gaaagaattcctcagtggtgtattattggaggatgctaaaaactatcatgcatggtcaca 460
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gaaagaattcctcagtggtgtattattggaggatgctaaaaactatcatgcatggtcaca 60


Query: 461 tagacaatggntattaaaaacctatcgtgattggaatggtgaattggcaatggtcgataa 520
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tagacaatggttattaaaaacctatcgtgattggaatggtgaattggcaatggtcgataa 120


Query: 521 attattatcgttggatcatcgtaataattcagtttggaatcaccgttttttcgtcatttc 580
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 attattatcgttggatcatcgtaataattcagtttggaatcaccgttttttcgtcatttc 180


Query: 581 aaatttaaatccatctcctttccctttgtctttgatcgaacgtgaagttgaattt 635
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 aaatttaaatccatctcctttccctttgtctttgatcgaacgtgaagttgaattt 235

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 102105510
Number of Hits to DB: 1,231,528,107
Number of extensions: 73051124
Number of successful extensions: 5901505
Number of sequences better than 10.0: 141
Length of query: 1019
Length of database: 101,790,757,118
Length adjustment: 24
Effective length of query: 995
Effective length of database: 99,340,224,878
Effective search space: 98843523753610
Effective search space used: 98843523753610
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)

protein update 2009. 7.31
Homology vs Protein
Query= Contig-U04870-1 (Contig-U04870-1Q) /CSM_Contig/Contig-U04870-1Q.Seq.d
(1019 letters)

Database: nrp_A
3,268,448 sequences; 1,061,185,681 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

BC129222_1(BC129222|pid:none) Danio rerio zgc:158397, mRNA (cDNA... 202 3e-63
A41013(A41013)protein farnesyltransferase (EC 2.5.1.-) alpha cha... 205 6e-63
(Q61239) RecName: Full=Protein farnesyltransferase/geranylgerany... 202 1e-61
BC157425_1(BC157425|pid:none) Xenopus laevis hypothetical protei... 199 2e-61
BC085758_1(BC085758|pid:none) Rattus norvegicus farnesyltransfer... 201 2e-61
(P49354) RecName: Full=Protein farnesyltransferase/geranylgerany... 200 3e-61
(Q04631) RecName: Full=Protein farnesyltransferase/geranylgerany... 199 4e-61
AF525030_1(AF525030|pid:none) Catharanthus roseus farnesyltransf... 202 6e-60
AK060892_1(AK060892|pid:none) Oryza sativa Japonica Group cDNA c... 190 2e-56
EF086798_1(EF086798|pid:none) Picea sitchensis clone WS02736_F21... 184 1e-53
AB201555_1(AB201555|pid:none) Bombyx mori FNTA mRNA for farnesyl... 194 2e-53
(O24304) RecName: Full=Protein farnesyltransferase/geranylgerany... 182 3e-52
(Q9LX33) RecName: Full=Protein farnesyltransferase/geranylgerany... 186 2e-51
BC112662_1(BC112662|pid:none) Bos taurus farnesyltransferase, CA... 202 2e-50
AK340099_1(AK340099|pid:none) Acyrthosiphon pisum ACYPI008214 mR... 182 1e-49
BT036588_1(BT036588|pid:none) Zea mays full-length cDNA clone ZM... 180 3e-49
AM439248_6(AM439248|pid:none) Vitis vinifera contig VV79X007207.... 173 3e-48
AB083372_1(AB083372|pid:none) Entamoeba histolytica EhFTalpha ge... 157 8e-41
AF038615_3(AF038615|pid:none) Caenorhabditis elegans cosmid R02D... 151 2e-40
AY815227_1(AY815227|pid:none) Schistosoma japonicum SJCHGC05785 ... 161 3e-40
CP001329_518(CP001329|pid:none) Micromonas sp. RCC299 chromosome... 159 5e-40
DQ863313_1(DQ863313|pid:none) Penicillium marneffei RAM2-like pr... 145 1e-39
AP007157_702(AP007157|pid:none) Aspergillus oryzae RIB40 genomic... 139 4e-38
BC037295_1(BC037295|pid:none) Homo sapiens farnesyltransferase, ... 160 7e-38
CR382128_637(CR382128|pid:none) Yarrowia lipolytica strain CLIB1... 126 2e-37
CU640366_993(CU640366|pid:none) Podospora anserina genomic DNA c... 142 8e-37
AK123002_1(AK123002|pid:none) Homo sapiens cDNA FLJ16794 fis, cl... 114 1e-35
CR382138_479(CR382138|pid:none) Debaryomyces hansenii strain CBS... 125 4e-34
FN392319_194(FN392319|pid:none) Pichia pastoris GS115 chromosome... 122 2e-33
(P29703) RecName: Full=Protein farnesyltransferase/geranylgerany... 125 2e-31
(Q9Y765) RecName: Full=Protein farnesyltransferase/geranylgerany... 124 5e-31
AB092841_1(AB092841|pid:none) Candida glabrata RAM2, CDC16 genes... 120 2e-30
CR380958_421(CR380958|pid:none) Candida glabrata strain CBS138 c... 120 2e-30
FM992688_882(FM992688|pid:none) Candida dubliniensis CD36 chromo... 122 3e-30
CU928167_19(CU928167|pid:none) Kluyveromyces thermotolerans stra... 119 6e-30
CU928176_21(CU928176|pid:none) Zygosaccharomyces rouxii strain C... 120 4e-29
AE016816_298(AE016816|pid:none) Ashbya gossypii (= Eremothecium ... 112 6e-28
CP000496_875(CP000496|pid:none) Pichia stipitis CBS 6054 chromos... 108 6e-28
AB171159_1(AB171159|pid:none) Macaca fascicularis brain cDNA clo... 121 3e-26
AF513631_1(AF513631|pid:none) Talaromyces emersonii geranylgeran... 110 1e-22
CR940352_687(CR940352|pid:none) Theileria annulata strain Ankara... 95 3e-18
BT035588_1(BT035588|pid:none) Zea mays full-length cDNA clone ZM... 70 2e-16
CP000590_238(CP000590|pid:none) Ostreococcus lucimarinus CCE9901... 77 1e-14
CR382131_563(CR382131|pid:none) Yarrowia lipolytica strain CLIB1... 75 1e-13
CR954210_242(CR954210|pid:none) Ostreococcus tauri strain OTTH05... 72 1e-12
BC012214_1(BC012214|pid:none) Mus musculus Rab geranylgeranyl tr... 73 2e-11
AK146917_1(AK146917|pid:none) Mus musculus 17 days embryo kidney... 73 2e-11
AF127660_1(AF127660|pid:none) Mus musculus strain C57BL/6J RAB g... 73 2e-11
(Q9JHK4) RecName: Full=Geranylgeranyl transferase type-2 subunit... 73 2e-11
BC124249_1(BC124249|pid:none) Danio rerio zgc:153107, mRNA (cDNA... 73 2e-11
(Q5EA80) RecName: Full=Geranylgeranyl transferase type-2 subunit... 71 7e-11
CR541797_1(CR541797|pid:none) Homo sapiens full open reading fra... 70 1e-10
(Q5NVK5) RecName: Full=Geranylgeranyl transferase type-2 subunit... 70 1e-10
(Q92696) RecName: Full=Geranylgeranyl transferase type-2 subunit... 70 1e-10
(Q55DQ4) RecName: Full=Geranylgeranyl transferase type-2 subunit... 69 3e-10
AY811441_1(AY811441|pid:none) Schistosoma japonicum SJCHGC04459 ... 68 6e-10
FM992688_378(FM992688|pid:none) Candida dubliniensis CD36 chromo... 67 8e-10
AL035356_31(AL035356|pid:none) Arabidopsis thaliana DNA chromoso... 67 1e-09
AY072209_1(AY072209|pid:none) Arabidopsis thaliana putative Rab ... 67 1e-09
AM465666_3(AM465666|pid:none) Vitis vinifera contig VV78X057834.... 66 2e-09
(O93829) RecName: Full=Geranylgeranyl transferase type-2 subunit... 65 3e-09
CR380956_40(CR380956|pid:none) Candida glabrata strain CBS138 ch... 65 3e-09
AB161972_1(AB161972|pid:none) Entamoeba histolytica EhGGTIIa gen... 64 8e-09
CP000500_286(CP000500|pid:none) Pichia stipitis CBS 6054 chromos... 64 8e-09
EU970986_1(EU970986|pid:none) Zea mays clone 355312 rab geranylg... 63 1e-08
S48301(S48301;A39655;S56803;S19037) geranylgeranyl transferase (... 63 2e-08
CP001331_382(CP001331|pid:none) Micromonas sp. RCC299 chromosome... 62 2e-08
AM920437_716(AM920437|pid:none) Penicillium chrysogenum Wisconsi... 62 2e-08
BC077401_1(BC077401|pid:none) Xenopus laevis Rab geranylgeranylt... 59 2e-07
CU928173_453(CU928173|pid:none) Zygosaccharomyces rouxii strain ... 59 2e-07
AM270079_50(AM270079|pid:none) Aspergillus niger contig An04c018... 58 5e-07
AF100664_1(AF100664|pid:none) Caenorhabditis elegans cosmid M57,... 55 5e-06
CR954214_21(CR954214|pid:none) Ostreococcus tauri strain OTTH059... 54 7e-06
CU638743_388(CU638743|pid:none) Podospora anserina genomic DNA c... 54 1e-05
AY735507_1(AY735507|pid:none) Arabidopsis thaliana chromosome 1 ... 50 2e-04
AL590442_104(AL590442|pid:none) chromosome II of strain GB-M1 of... 49 2e-04
AB016871_10(AB016871|pid:none) Arabidopsis thaliana genomic DNA,... 49 2e-04
AM910996_591(AM910996|pid:none) Plasmodium knowlesi strain H chr... 49 2e-04
AC004122_12(AC004122|pid:none) Arabidopsis thaliana chromosome I... 49 4e-04
AC096673_44(AC096673|pid:none) Trypanosoma brucei chromosome 3 c... 48 5e-04
AY735509_1(AY735509|pid:none) Arabidopsis thaliana chromosome 1 ... 47 8e-04
AY735508_1(AY735508|pid:none) Arabidopsis thaliana chromosome 1 ... 47 8e-04
(A5GJR7) RecName: Full=1,4-alpha-glucan-branching enzyme; ... 47 0.001
DQ440467_1(DQ440467|pid:none) Aedes aegypti clone AET-6725 Rab-p... 47 0.001
CP000951_793(CP000951|pid:none) Synechococcus sp. PCC 7002, comp... 45 0.003
AY880032_1(AY880032|pid:none) Plasmodium falciparum clone Dd2 pr... 45 0.004
CP000300_576(CP000300|pid:none) Methanococcoides burtonii DSM 62... 45 0.005
CR940353_799(CR940353|pid:none) Theileria annulata strain Ankara... 44 0.012
(Q7U646) RecName: Full=1,4-alpha-glucan-branching enzyme; ... 44 0.012
AE014298_385(AE014298|pid:none) Drosophila melanogaster chromoso... 44 0.012
AM443513_5(AM443513|pid:none) Vitis vinifera contig VV78X057535.... 43 0.016
AK073525_1(AK073525|pid:none) Oryza sativa Japonica Group cDNA c... 43 0.020
AK106529_1(AK106529|pid:none) Oryza sativa Japonica Group cDNA c... 42 0.026
AE014187_401(AE014187|pid:none) Plasmodium falciparum 3D7 chromo... 42 0.035
CP001291_1331(CP001291|pid:none) Cyanothece sp. PCC 7424, comple... 42 0.035
AL162412_1(AL162412|pid:none) Human DNA sequence from clone RP11... 41 0.059
AF461504_1(AF461504|pid:none) Trypanosoma cruzi strain Tulahuen ... 41 0.059
CP000254_1402(CP000254|pid:none) Methanospirillum hungatei JF-1,... 41 0.059
(Q3AYE2) RecName: Full=1,4-alpha-glucan-branching enzyme; ... 41 0.059
(A2C142) RecName: Full=1,4-alpha-glucan-branching enzyme; ... 41 0.077
AE010300_2266(AE010300|pid:none) Leptospira interrogans serovar ... 40 0.10
AP009552_3058(AP009552|pid:none) Microcystis aeruginosa NIES-843... 40 0.13
AF461505_1(AF461505|pid:none) Trypanosoma cruzi strain Tulahuen ... 40 0.13
AM502247_221(AM502247|pid:none) Leishmania infantum chromosome 29. 40 0.13
AM502251_105(AM502251|pid:none) Leishmania infantum chromosome 33. 40 0.13
(Q31BV0) RecName: Full=1,4-alpha-glucan-branching enzyme; ... 40 0.13
CP001037_5817(CP001037|pid:none) Nostoc punctiforme PCC 73102, c... 40 0.17
CP000743_917(CP000743|pid:none) Methanococcus aeolicus Nankai-3,... 40 0.17
CP000828_2756(CP000828|pid:none) Acaryochloris marina MBIC11017,... 39 0.22
(A2BQ65) RecName: Full=1,4-alpha-glucan-branching enzyme; ... 39 0.38
AM910994_637(AM910994|pid:none) Plasmodium knowlesi strain H chr... 38 0.50
AE000666_69(AE000666|pid:none) Methanothermobacter thermautotrop... 38 0.50
CP000080_202(CP000080|pid:none) Leishmania major strain Friedlin... 38 0.50
AF461507_1(AF461507|pid:none) Leishmania major strain Friedlin f... 38 0.50
(A1L3L1) RecName: Full=Protein prenyltransferase alpha subunit r... 38 0.50
(A5GSG4) RecName: Full=1,4-alpha-glucan-branching enzyme; ... 38 0.65
CP000951_2520(CP000951|pid:none) Synechococcus sp. PCC 7002, com... 38 0.65
CP000867_209(CP000867|pid:none) Methanococcus maripaludis C6, co... 37 1.5
AL162412_2(AL162412|pid:none) Human DNA sequence from clone RP11... 37 1.5
CP000780_2022(CP000780|pid:none) Candidatus Methanoregula boonei... 37 1.5
(Q7Z6K3) RecName: Full=Protein prenyltransferase alpha subunit r... 37 1.5
BC053622_1(BC053622|pid:none) Homo sapiens protein prenyltransfe... 37 1.5
AE010299_1572(AE010299|pid:none) Methanosarcina acetivorans str.... 36 1.9
AK293444_1(AK293444|pid:none) Homo sapiens cDNA FLJ53971 complet... 36 1.9
(Q5U2N8) RecName: Full=Tetratricopeptide repeat protein 26; ... 36 1.9
T46452(T46452)hypothetical protein DKFZp434I042.1 - human (fragm... 36 1.9
(Q8BS45) RecName: Full=Tetratricopeptide repeat protein 26; ... 36 1.9
CP000609_669(CP000609|pid:none) Methanococcus maripaludis C5, co... 36 1.9
(A3KPW7) RecName: Full=Protein prenyltransferase alpha subunit r... 36 1.9
AM494966_192(AM494966|pid:none) Leishmania braziliensis chromoso... 36 2.5
AE010299_1324(AE010299|pid:none) Methanosarcina acetivorans str.... 36 2.5
CP000117_1549(CP000117|pid:none) Anabaena variabilis ATCC 29413,... 35 3.2
AC004218_24(AC004218|pid:none) Arabidopsis thaliana chromosome 2... 35 3.2
(A4III8) RecName: Full=Tetratricopeptide repeat protein 26; ... 35 3.2
CP001229_225(CP001229|pid:none) Sulfurihydrogenibium azorense Az... 35 3.2
CP000350_1206(CP000350|pid:none) Leptospira borgpetersenii serov... 35 3.2
CP000828_625(CP000828|pid:none) Acaryochloris marina MBIC11017, ... 35 3.2
CP000882_129(CP000882|pid:none) Hemiselmis andersenii chromosome... 35 3.2
AK300807_1(AK300807|pid:none) Homo sapiens cDNA FLJ55883 complet... 35 4.2
AK295092_1(AK295092|pid:none) Homo sapiens cDNA FLJ60534 complet... 35 4.2
CP000099_3513(CP000099|pid:none) Methanosarcina barkeri str. Fus... 35 4.2
CP000099_270(CP000099|pid:none) Methanosarcina barkeri str. Fusa... 35 5.5
CP000096_480(CP000096|pid:none) Pelodictyon luteolum DSM 273, co... 35 5.5
BC124321_1(BC124321|pid:none) Danio rerio hypothetical LOC561820... 35 5.5
CP000847_1158(CP000847|pid:none) Rickettsia akari str. Hartford,... 35 5.5
CR940352_241(CR940352|pid:none) Theileria annulata strain Ankara... 35 5.5
AF063866_148(AF063866|pid:none) Melanoplus sanguinipes entomopox... 34 7.2
AP009552_361(AP009552|pid:none) Microcystis aeruginosa NIES-843 ... 34 9.4
CP000562_60(CP000562|pid:none) Methanoculleus marisnigri JR1, co... 34 9.4
(P54032) RecName: Full=30S ribosomal protein S24e; &B64349(B643... 34 9.4
AL035475_26(AL035475|pid:none) Plasmodium falciparum MAL4P2. &A... 34 9.4

>BC129222_1(BC129222|pid:none) Danio rerio zgc:158397, mRNA (cDNA
clone MGC:158397 IMAGE:7067462), complete cds.
Length = 374

Score = 202 bits (515), Expect(2) = 3e-63
Identities = 95/208 (45%), Positives = 144/208 (69%), Gaps = 1/208 (0%)
Frame = +3

Query: 15 GYVPFSKRPEWSDVKPLAQDDGPHPICPILYSEVFKDKMNYFRAILKSKEKSLRVLDLLE 194
GY+ + R EW+D++P+ QDDGP+P+ I YSE F D + FRA+LK+ E+S R L
Sbjct: 40 GYIFYRDRKEWADLEPVPQDDGPNPVVKIAYSEKFTDVFDMFRALLKNDERSERAFALTA 99

Query: 195 EVIQENPSNYTIWYYRREVLKAIEQDETIEYDIQQEMNLLNDMGETDPKNYQIWNHRRFI 374
E I N +NYT+W+YRR +L+A+++ D+++EMN + + E PKNYQ+W+HRR +
Sbjct: 100 EAIDLNAANYTVWHYRRVLLQALKK------DLREEMNYITAIIEDQPKNYQVWHHRRMV 153

Query: 375 VEKYIG-SDKKEFLSGVLLEDAKNYHAWSHRQWXLKTYRDWNGELAMVDKLLSLDHRNNS 551
VE +D+ +F++ +L +DAKNYHAW HRQW ++ Y+ W+GEL V++LL D RNNS
Sbjct: 154 VEWLSDPADELQFVAEILSQDAKNYHAWQHRQWVIQEYKLWDGELEYVEELLEEDVRNNS 213

Query: 552 VWNHRFFVISNLNPSPFPLSLIEREVEF 635
WN R FVIS+ + P ++++REV++
Sbjct: 214 AWNQRHFVISHTSGYSDP-AILQREVQY 240

Score = 63.9 bits (154), Expect(2) = 3e-63
Identities = 31/103 (30%), Positives = 63/103 (61%), Gaps = 10/103 (9%)
Frame = +1

Query: 637 FAVNHIRHSPNNESPWSYLKGLFKGQKISTIYPSLLDILLEMKSKYIGCS--HVNSIILD 810
+ + I+ +P+NES W+YLK + + +S+ YP LL+ ++E++ CS ++ + ++D
Sbjct: 240 YTLEQIKKAPHNESAWNYLKAILQDGGLSS-YPGLLEQVMELQDT---CSSPYLTAFLVD 295

Query: 811 IYQE--------QNTKISLENSLNICKLLSETIDPIHKNYWNF 915
+Y++ + + +L +L +CKLL+E +D I + YWN+
Sbjct: 296 LYEDALESNNSSHDQQETLSKALELCKLLAEDLDTIRREYWNY 338

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3268448
Number of Hits to DB: 1,516,280,056
Number of extensions: 29296207
Number of successful extensions: 77424
Number of sequences better than 10.0: 151
Number of HSP's gapped: 76724
Number of HSP's successfully gapped: 273
Length of query: 339
Length of database: 1,061,185,681
Length adjustment: 129
Effective length of query: 210
Effective length of database: 639,555,889
Effective search space: 134306736690
Effective search space used: 134306736690
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)

PSORT

psg: 0.75 gvh: 0.16 alm: 0.43 top: 0.53 tms: 0.00 mit: 0.09 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

52.0 %: nuclear
28.0 %: cytoplasmic
4.0 %: cytoskeletal
4.0 %: vacuolar
4.0 %: Golgi
4.0 %: mitochondrial
4.0 %: vesicles of secretory system

>> prediction for Contig-U04870-1 is nuc

VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 2
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0