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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U04840-1
Contig ID Contig-U04840-1
Contig update 2001. 8.29
Contig sequence 
>Contig-U04840-1 (Contig-U04840-1Q) /CSM_Contig/Contig-U04840-1Q.Seq.d
TTACATTTTCAAATGATGAAAAACACCATAAATTTAGATATGCCGGTGAT
ATTGGATTCATTTATGCAGAGGNGGAGGAGGAGGAGGAAGAAGAAGATTA
TGATGATGAGGATTTAAATGATGAGGAAAGTGATGAAGATGATTTTGATA
GTGATGAAGATGTTTCAAGATTTATTAAAGGAAAGTTATTACAAAAACAA
CAGAAAATCTATAAAGATTTAGAAAGATTCGAGCATTCTCGTCAGCAGCA
ACATCATCACCACCTGATCAAGTCAAGTCAATAGTTCGAAACCAAGATGT
AGATCACATTCTAGAGATTATATCGAAAGTGAAATTGCCATATATCTCCT
CAATAATAGTGAGAAACAAATACCTTTATCACCAACAAAGAAGAGATCAT
TATCAAATCAATTTCACCAAGATGGAGGTAATAATACCACCGATGGTAAC
TTGTTTAATAATTTTAGTACCAATGGAGGAGGTAATAGAACAAATATTGA
TGATTCCATAATACAATCAATATTGGAATCACCATCATCATCATCACTCA
AATATAGTAAAAGTAAAAAATCAAAAAAACCATTCTTACCTCCACTTTCG
ACATTAGTTCATATCTTAGTTACTTTTATCATTCTTAGTGCATTTTTGTG
CATTTTTTATGTCTTTACCCTCAAATTAAAAATGTAAAATTAATTTC
Gap no gap
Contig length 697
Chromosome number (1..6, M) 1
Chromosome length 4919822
Start point 4884653
End point 4885234
Strand (PLUS/MINUS) PLUS
Number of clones 2
Number of EST 2
Link to clone list U04840
List of clone(s) 

est1=SSD317E,1,695
est2=VSA651Z,205,698
Translated Amino Acid sequence 
lhfqmmkntinldmpvildsfmqrxrrrrkkkimmmri*mmrkvmkmilivmkmfqdllk
esyyknnrksiki*kdssilvssniitt*SSQVNSSKPRCRSHSRDYIESEIAIYLLNNS
EKQIPLSPTKKRSLSNQFHQDGGNNTTDGNLFNNFSTNGGGNRTNIDDSIIQSILESPSS
SSLKYSKSKKSKKPFLPPLSTLVHILVTFIILSAFLCIFYVFTLKLKM*n*f
Translated Amino Acid sequence (All Frames) 
Frame A:
lhfqmmkntinldmpvildsfmqrxrrrrkkkimmmri*mmrkvmkmilivmkmfqdllk
esyyknnrksiki*kdssilvssniitt*SSQVNSSKPRCRSHSRDYIESEIAIYLLNNS
EKQIPLSPTKKRSLSNQFHQDGGNNTTDGNLFNNFSTNGGGNRTNIDDSIIQSILESPSS
SSLKYSKSKKSKKPFLPPLSTLVHILVTFIILSAFLCIFYVFTLKLKM*n*f


Frame B:
yifk**ktp*i*icr*ywihlcrggggggrrrl***gfk**gk**r*f****rcfkiy*r
kvitkttenl*rfrkirafssaatssppdqvksivrnqdvdhileiiskvklpyissiiv
rnkylyhqqrrdhyqinftkmeviippmvtcliilvpmeevieqilmip*ynqywnhhhh
hhsnivkvknqknhsylhfrh*fis*lllsflvhfcaffmslpsn*kckinf


Frame C:
tfsndekhhkfryagdigfiyaexeeeeeeedyddedlndeesdeddfdsdedvsrfikg
kllqkqqkiykdlerfehsrqqqhhhhlikssq*fetkm*itf*rlyrk*nchispq***
etntfitnkeeiiiksisprwr**yhrw*lv**f*yqwrr**nky**fhntinigitiii
itqi**k*kikktiltstfdissylsyfyhs*cifvhflclypqiknvkli
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U04840-1 (Contig-U04840-1Q)
/CSM_Contig/Contig-U04840-1Q.Seq.d
         (697 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U04840-1 (Contig-U04840-1Q) /CSM_Contig/Conti...   795  0.0
Contig-U10310-1 (Contig-U10310-1Q) /CSM_Contig/Conti...    46  5e-05
Contig-U14010-1 (Contig-U14010-1Q) /CSM_Contig/Conti...    44  2e-04
Contig-U06697-1 (Contig-U06697-1Q) /CSM_Contig/Conti...    44  2e-04
Contig-U04099-1 (Contig-U04099-1Q) /CSM_Contig/Conti...    44  2e-04
Contig-U11364-1 (Contig-U11364-1Q) /CSM_Contig/Conti...    42  8e-04
Contig-U09604-1 (Contig-U09604-1Q) /CSM_Contig/Conti...    42  8e-04
Contig-U13162-1 (Contig-U13162-1Q) /CSM_Contig/Conti...    40  0.003
Contig-U11923-1 (Contig-U11923-1Q) /CSM_Contig/Conti...    40  0.003
Contig-U02385-1 (Contig-U02385-1Q) /CSM_Contig/Conti...    40  0.003

>Contig-U04840-1 (Contig-U04840-1Q) /CSM_Contig/Contig-U04840-1Q.Seq.d
          Length = 697

 Score =  795 bits (401), Expect = 0.0
 Identities = 401/401 (100%)
 Strand = Plus / Plus

                                                                       
Query: 158 agatgtttcaagatttattaaaggaaagttattacaaaaacaacagaaaatctataaaga 217
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 158 agatgtttcaagatttattaaaggaaagttattacaaaaacaacagaaaatctataaaga 217

                                                                       
Query: 218 tttagaaagattcgagcattctcgtcagcagcaacatcatcaccacctgatcaagtcaag 277
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 218 tttagaaagattcgagcattctcgtcagcagcaacatcatcaccacctgatcaagtcaag 277

                                                                       
Query: 278 tcaatagttcgaaaccaagatgtagatcacattctagagattatatcgaaagtgaaattg 337
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 tcaatagttcgaaaccaagatgtagatcacattctagagattatatcgaaagtgaaattg 337

                                                                       
Query: 338 ccatatatctcctcaataatagtgagaaacaaatacctttatcaccaacaaagaagagat 397
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 ccatatatctcctcaataatagtgagaaacaaatacctttatcaccaacaaagaagagat 397

                                                                       
Query: 398 cattatcaaatcaatttcaccaagatggaggtaataataccaccgatggtaacttgttta 457
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 cattatcaaatcaatttcaccaagatggaggtaataataccaccgatggtaacttgttta 457

                                                                       
Query: 458 ataattttagtaccaatggaggaggtaatagaacaaatattgatgattccataatacaat 517
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 ataattttagtaccaatggaggaggtaatagaacaaatattgatgattccataatacaat 517

                                                    
Query: 518 caatattggaatcaccatcatcatcatcactcaaatatagt 558
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 caatattggaatcaccatcatcatcatcactcaaatatagt 558


 Score =  234 bits (118), Expect = 1e-61
 Identities = 118/118 (100%)
 Strand = Plus / Plus

                                                                       
Query: 580 ccattcttacctccactttcgacattagttcatatcttagttacttttatcattcttagt 639
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 580 ccattcttacctccactttcgacattagttcatatcttagttacttttatcattcttagt 639

                                                                     
Query: 640 gcatttttgtgcattttttatgtctttaccctcaaattaaaaatgtaaaattaatttc 697
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 640 gcatttttgtgcattttttatgtctttaccctcaaattaaaaatgtaaaattaatttc 697


 Score =  184 bits (93), Expect = 9e-47
 Identities = 96/96 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  ttacattttcaaatgatgaaaaacaccataaatttagatatgccggtgatattggattca 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  ttacattttcaaatgatgaaaaacaccataaatttagatatgccggtgatattggattca 60

                                              
Query: 61 tttatgcagaggnggaggaggaggaggaagaagaag 96
          ||||||||||||||||||||||||||||||||||||
Sbjct: 61 tttatgcagaggnggaggaggaggaggaagaagaag 96


>Contig-U10310-1 (Contig-U10310-1Q) /CSM_Contig/Contig-U10310-1Q.Seq.d
          Length = 1172

 Score = 46.1 bits (23), Expect = 5e-05
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                  
Query: 10  caaatgatgaaaaacaccataaa 32
           |||||||||||||||||||||||
Sbjct: 628 caaatgatgaaaaacaccataaa 606


>Contig-U14010-1 (Contig-U14010-1Q) /CSM_Contig/Contig-U14010-1Q.Seq.d
          Length = 1065

 Score = 44.1 bits (22), Expect = 2e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 75  gaggaggaggaggaagaagaag 96
           ||||||||||||||||||||||
Sbjct: 887 gaggaggaggaggaagaagaag 908


 Score = 34.2 bits (17), Expect = 0.19
 Identities = 20/21 (95%)
 Strand = Plus / Plus

                                
Query: 74  ggaggaggaggaggaagaaga 94
           |||||||||||| ||||||||
Sbjct: 889 ggaggaggaggaagaagaaga 909


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 12,906
Number of Sequences: 6905
Number of extensions: 12906
Number of successful extensions: 2715
Number of sequences better than 10.0: 412
length of query: 697
length of database: 5,674,871
effective HSP length: 16
effective length of query: 681
effective length of database: 5,564,391
effective search space: 3789350271
effective search space used: 3789350271
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2009. 7. 3
Homology vs DNA 
Query= Contig-U04840-1 (Contig-U04840-1Q) /CSM_Contig/Contig-U04840-1Q.Seq.d
         (697 letters)

Database: ddbj_A
           102,105,510 sequences; 101,790,757,118 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(C92269) Dictyostelium discoideum slug cDNA, clone SSD317.        539   0.0    4
(AY631855) Dictyostelium discoideum nucleomorphin B (numB) m...   539   0.0    3
(AF140042) Dictyostelium discoideum putative calmodulin-bind...   539   0.0    3
(AU261633) Dictyostelium discoideum vegetative cDNA clone:VS...   694   0.0    2
(AU072063) Dictyostelium discoideum slug cDNA, clone SSD317.      155   6e-69  2
(AY714819) Uncultured archaeon GZfos13E1 clone GZfos13E1, **...    44   0.013  2
(GE865889) 1112870055623 BABEVCEREB-C-01-1-7KB Papio anubis ...    42   0.018  2
(AC116924) Dictyostelium discoideum chromosome 2 map 6357117...    38   0.031  6
(BG184921) RST3855 Athersys RAGE Library Homo sapiens cDNA, ...    38   0.035  2
(AC180490) Strongylocentrotus purpuratus clone R3-3012H12, W...    44   0.036  3
(AC178063) Strongylocentrotus purpuratus clone R3-3056P07, W...    44   0.042  4
(AC178838) Strongylocentrotus purpuratus clone R3-26B20, WOR...    42   0.095  5
(AW903843) CM4-NN1038-220400-153-f08 NN1038 Homo sapiens cDN...    38   0.10   2
(AW903914) CM4-NN1038-100500-173-f08 NN1038 Homo sapiens cDN...    38   0.10   2
(ED625678) GM_WBa0023E12.r GM_WBa Glycine max genomic clone ...    50   0.11   1
(AW900361) CM4-NN1004-040500-534-e02 NN1004 Homo sapiens cDN...    38   0.13   2
(BI032531) PM3-NN1174-080101-019-d12 NN1174 Homo sapiens cDN...    38   0.14   2
(T19395) e07001s Testis 2 Homo sapiens cDNA clone e07001 5' ...    38   0.15   2
(N53796) yz07a07.r1 Soares_multiple_sclerosis_2NbHMSP Homo s...    38   0.15   2
(BP421497) Homo sapiens mRNA, clone: HIE04858r, 3' end, expr...    38   0.19   2
(AC128776) Rattus norvegicus clone CH230-428M4, WORKING DRAF...    48   0.19   2
(EL741784) LV0231062 Taenia solium UNAM-cd2_larva Taenia sol...    42   0.20   2
(BM272471) ig42c12.y1 HR85 islet Homo sapiens cDNA 5', mRNA ...    38   0.20   2
(DQ101722) Anopheles arabiensis isolate Bb9 ENSANGG000000079...    38   0.20   2
(DQ101721) Anopheles arabiensis isolate Bb8 ENSANGG000000079...    38   0.20   2
(CD678286) hp05c05.y1 Human Trabecular meshwork cDNA: hohphq...    38   0.20   2
(CD671735) fg07b02.y1 Human Iris cDNA (Normalized): fg Homo ...    38   0.21   2
(CK004591) AGENCOURT_16394673 NIH_MGC_229 Homo sapiens cDNA ...    38   0.22   2
(BM717408) UI-E-EJ0-ahm-i-16-0-UI.r1 UI-E-EJ0 Homo sapiens c...    38   0.22   2
(CD677266) ho14b12.y1 Human Trabecular meshwork cDNA: hohphq...    38   0.23   2
(GE887952) 1112934369819 BABEVCEREB-C-01-1-7KB Papio anubis ...    38   0.24   2
(BM674771) UI-E-EJ0-ahm-i-16-0-UI.s1 UI-E-EJ0 Homo sapiens c...    38   0.24   2
(EF215081) Callithrix jacchus clone L01-42.2_F01_003.ab1 N-c...    38   0.24   2
(GE879998) 1112934242138 BABEVCEREB-C-01-1-7KB Papio anubis ...    38   0.25   2
(FC146053) 1106908572286 BABEVPN-C-01-1-7KB Papio anubis cDN...    38   0.25   2
(CA432104) UI-H-FG1-bgr-e-14-0-UI.s1 NCI_CGAP_FG1 Homo sapie...    38   0.26   2
(BM728707) UI-E-EJ0-aiu-p-02-0-UI.r1 UI-E-EJ0 Homo sapiens c...    38   0.26   2
(CN295538) 17000600104148 GRN_PRENEU Homo sapiens cDNA 5', m...    38   0.27   2
(GE854614) 1112869947292 BABEVCEREB-C-01-1-7KB Papio anubis ...    38   0.27   2
(N53709) yz06a07.r1 Soares_multiple_sclerosis_2NbHMSP Homo s...    36   0.27   2
(AL550466) human full-length cDNA 3-PRIME end of clone CS0DI...    38   0.27   2
(CJ464424) Macaca fascicularis mRNA, clone: QnpA-13185, 5' e...    38   0.28   2
(CD612880) 56056182J1 FLP Homo sapiens cDNA, mRNA sequence.        38   0.28   2
(GE877021) 1112870200924 BABEVCEREB-C-01-1-7KB Papio anubis ...    38   0.28   2
(GE847938) 1112854364085 BABEVCEREB-C-01-1-7KB Papio anubis ...    38   0.28   2
(GE886440) 1112934343474 BABEVCEREB-C-01-1-7KB Papio anubis ...    38   0.29   2
(GE865049) 1112870049246 BABEVCEREB-C-01-1-7KB Papio anubis ...    38   0.29   2
(GE885164) 1112934320064 BABEVCEREB-C-01-1-7KB Papio anubis ...    38   0.31   2
(CN644254) ILLUMIGEN_MCQ_9980 Katze_MMPL2 Macaca mulatta cDN...    38   0.33   2
(BE738561) 601572841T1 NIH_MGC_57 Homo sapiens cDNA clone IM...    38   0.34   2
(CN646690) ILLUMIGEN_MCQ_26854 Katze_MMBR Macaca mulatta cDN...    38   0.34   2
(AP010558) Lotus japonicus genomic DNA, chromosome 4, clone:...    40   0.34   3
(CN641935) ILLUMIGEN_MCQ_5632 Katze_MMBR Macaca mulatta cDNA...    38   0.34   2
(BX463367) human full-length cDNA 3-PRIME end of clone CS0DN...    38   0.35   2
(CN805517) ILLUMIGEN_MCQ_36758 Katze_MMBR Macaca mulatta cDN...    38   0.35   2
(AL568819) human full-length cDNA 3-PRIME end of clone CS0DE...    38   0.36   2
(AC177277) Strongylocentrotus purpuratus clone R3-44D7, WORK...    40   0.36   5
(CN643700) ILLUMIGEN_MCQ_8406 Katze_MMBR Macaca mulatta cDNA...    38   0.36   2
(AL565010) human full-length cDNA 3-PRIME end of clone CS0DN...    38   0.37   2
(BX422993) human full-length cDNA 5-PRIME end of clone CS0DN...    38   0.38   2
(AK255212) Gryllus bimaculatus mRNA, GBcontig02073.                40   0.41   2
(AC209512) Solanum lycopersicum chromosome 6 clone C06HBa025...    48   0.45   1
(AC216659) Solanum lycopersicum chromosome 6 clone C06SLe009...    48   0.45   1
(AC211046) Solanum lycopersicum chromosome 6 clone C06HBa011...    48   0.45   1
(AC178594) Strongylocentrotus purpuratus clone R3-3021N20, W...    48   0.45   1
(BH014935) TDGBS63TH cTOG Solanum lycopersicum genomic clone...    48   0.45   1
(ER498418) 1093015362728 Global-Ocean-Sampling_GS-35-01-01-1...    48   0.45   1
(EK561337) 1095521004720 Global-Ocean-Sampling_GS-32-01-01-1...    48   0.45   1
(EK546991) 1095516099892 Global-Ocean-Sampling_GS-32-01-01-1...    48   0.45   1
(EJ122506) 1092343379303 Global-Ocean-Sampling_GS-27-01-01-1...    48   0.45   1
(CV105452) AGENCOURT_31522109 NIH_MGC_238 Rattus norvegicus ...    48   0.45   1
(CR624856) full-length cDNA clone CS0DE005YG16 of Placenta o...    38   0.47   2
(CR603631) full-length cDNA clone CS0DN003YM24 of Adult brai...    38   0.49   2
(AB171295) Macaca fascicularis brain cDNA clone: QorA-13989,...    38   0.55   2
(CR598099) full-length cDNA clone CS0DN005YJ24 of Adult brai...    38   0.56   2
(AB173631) Macaca fascicularis brain cDNA clone: QflA-23483,...    38   0.56   2
(AB049856) Macaca fascicularis brain cDNA, clone:QnpA-19115,...    38   0.60   2
(AC116956) Dictyostelium discoideum chromosome 2 map 1418423...    38   0.61   8
(AC210549) Populus trichocarpa clone POP037-L01, complete se...    40   0.61   3
(AB209788) Homo sapiens mRNA for chimerin (chimaerin) 1 vari...    38   0.62   2
(AC130755) Rattus norvegicus clone CH230-10D6, *** SEQUENCIN...    44   0.65   5
(AK055060) Homo sapiens cDNA FLJ30498 fis, clone BRAWH200041...    38   0.68   2
(CQ715628) Sequence 1562 from Patent WO02068579.                   38   0.69   2
(Z22641) H.sapiens a2-chimaerin mRNA.                              38   0.71   2
(DL063629) Cancer Gene Determination and Therapeutic Screeni...    38   0.72   2
(AX332233) Sequence 2742 from Patent WO0194629.                    38   0.72   2
(X51408) Human mRNA for n-chimaerin.                               38   0.72   2
(AP010571) Lotus japonicus genomic DNA, clone: LjT17J13, TM1...    40   0.73   3
(DY249828) PMAM-aaa13d08.b1 Lamprey_EST_Brain Petromyzon mar...    40   0.75   2
(AK289941) Homo sapiens cDNA FLJ76755 complete cds, highly s...    38   0.75   2
(BC011393) Homo sapiens chimerin (chimaerin) 1, mRNA (cDNA c...    38   0.77   2
(AC143141) Macaca mulatta  BAC CH250-269F10 () complete sequ...    40   0.80   3
(AY753023) Penaeus monodon clone t2801 microsatellite sequence.    38   0.87   2
(BJ338020) Dictyostelium discoideum cDNA clone:dda59e23, 5' ...    36   0.89   2
(AC168609) Strongylocentrotus purpuratus clone R3-3046H22, W...    38   0.89   4
(DX933686) MUGQ_CH252P088F02Sp6_CP106_011 CHORI-252 Vervet M...    42   0.91   2
(EC393310) CcLS2a81l08f1 Carp skin library 2 Cyprinus carpio...    44   0.97   2
(FE394775) CBTP2169.fwd CBTP_Daphnia_pulex_Chosen_One_Librar...    36   0.98   2
(AC181866) Strongylocentrotus purpuratus clone R3-1019N19, W...    38   0.99   4
(BU689542) UI-CF-EC1-aec-e-15-0-UI.s1 UI-CF-EC1 Homo sapiens...    36   1.00   2
(AC126046) Mus musculus BAC clone RP23-176P24 from chromosom...    42   1.00   2
(AM957073) Sparus aurata EST, clone cDN04P0001D24, 5'-end se...    36   1.0    2
(FE394774) CBTP2169.rev CBTP_Daphnia_pulex_Chosen_One_Librar...    36   1.0    2
(CJ997419) Saccharomyces pastorianus mRNA, clone: D047-80, 5...    40   1.0    2
(EY350547) CAWZ17650.fwd CAWZ Helobdella robusta Primary Lat...    36   1.1    2
(BV673682) S215P60668FD10.T0 Clara Pan troglodytes troglodyt...    38   1.1    2
(DN933428) AGENCOURT_50143224 NCI_CGAP_Pr50 Rattus norvegicu...    38   1.1    2
(EY497684) CBBP3695.rev CBBP Hirudo medicinalis hermaphrodit...    32   1.1    3
(EV259398) MTYDV56TF JCVI-MT1 Medicago truncatula cDNA 5', m...    38   1.1    2
(EJ487593) 1095403514803 Global-Ocean-Sampling_GS-28-01-01-1...    44   1.2    2
(EJ593106) 1092961062713 Global-Ocean-Sampling_GS-29-01-01-1...    44   1.2    2
(AC136020) Mus musculus BAC clone RP24-434I13 from 12, compl...    40   1.2    4
(AC165344) Mus musculus BAC clone RP23-390P7 from chromosome...    40   1.2    4
(CS071214) Sequence 377 from Patent WO2001032927.                  38   1.2    2
(BD460125) TISSUE SPECIFIC GENES OF DIAGNOSTIC IMPORT.             38   1.2    2
(AR339215) Sequence 706 from patent US 6569662.                    38   1.3    2
(AC175524) Bos taurus clone CH240-119G19, WORKING DRAFT SEQU...    40   1.3    5
(AE014298) Drosophila melanogaster chromosome X, complete se...    40   1.3    10
(Z97192) Human DNA sequence from clone RP1-29C18 on chromoso...    42   1.3    5
(DW030816) CFW207-F09.y1d-s SHGC-CFW2 Gasterosteus aculeatus...    38   1.4    2
(CV308336) tj51c11.g7 Mouse 5' RACE clones Mus musculus cDNA...    36   1.4    2
(CV308335) tj51c11.b7 Mouse 5' RACE clones Mus musculus cDNA...    36   1.4    2
(CV308310) tj51a11.g7 Mouse 5' RACE clones Mus musculus cDNA...    36   1.4    2
(CV308309) tj51a11.b7 Mouse 5' RACE clones Mus musculus cDNA...    36   1.4    2
(AC201633) Strongylocentrotus purpuratus clone R3-3068I9, WO...    40   1.6    3
(AC155258) Mus musculus BAC clone RP24-83B1 from 12, complet...    40   1.7    5
(AC178868) Strongylocentrotus purpuratus clone R3-27A9, WORK...    44   1.7    3
(CU914414) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    42   1.7    4
(CU695335) Brassica rapa subsp. pekinensis clone KBrH132K02,...    40   1.7    4
(AC177984) Strongylocentrotus purpuratus clone R3-1117K6, WO...    34   1.7    5
(AC107783) Mus musculus chromosome 1, clone RP23-38G5, compl...    46   1.8    1
(AP007171) Aspergillus oryzae RIB40 genomic DNA, SC011.            46   1.8    1
(EA083819) Sequence 6079 from patent US 7186513.                   46   1.8    1
(AR676578) Sequence 6079 from patent US 6902887.                   46   1.8    1
(AC132555) Rattus norvegicus clone CH230-132J2, WORKING DRAF...    46   1.8    1
(CU929861) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    46   1.8    1
(CU468392) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    46   1.8    1
(CT737291) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    46   1.8    1
(AC184394) Strongylocentrotus purpuratus clone R3-3101M23, W...    46   1.8    1
(AC176304) Strongylocentrotus purpuratus clone R3-3055M9, WO...    46   1.8    1
(AC167204) Bos taurus clone CH240-193P3, *** SEQUENCING IN P...    46   1.8    1
(AB224143) Aspergillus oryzae cDNA, contig sequence: AoEST0985.    46   1.8    1
(EJ258283) 1095349023358 Global-Ocean-Sampling_GS-27-01-01-1...    46   1.8    1
(EI828081) POTIP34TF Solanum tuberosum RHPOTKEY BAC ends Sol...    46   1.8    1
(CE815916) tigr-gss-dog-17000318388685 Dog Library Canis lup...    46   1.8    1
(BJ430903) Dictyostelium discoideum cDNA clone:ddv9p04, 3' e...    46   1.8    1
(BJ430460) Dictyostelium discoideum cDNA clone:ddv7h08, 3' e...    46   1.8    1
(BJ430157) Dictyostelium discoideum cDNA clone:ddv6d09, 3' e...    46   1.8    1
(BJ429558) Dictyostelium discoideum cDNA clone:ddv3o23, 3' e...    46   1.8    1
(GD673660) 454GmaGlobSeed416309 Soybean Seeds Containing Glo...    46   1.8    1
(EY425223) ZY029951 Aspergillus oryzae EST Library Aspergill...    46   1.8    1
(AC158913) Mus musculus chromosome 5, clone RP24-268J3, comp...    40   1.9    3
(DK278628) Drosophila auraria mRNA, adult full-length cDNA c...    42   2.0    2
(BF094527) MR3-UT0050-120900-005-f10 UT0050 Homo sapiens cDN...    34   2.0    2
(DB694174) Solanum lycopersicum cDNA, clone: LEFL1050CD01, 5...    38   2.0    2
(BT052720) Medicago truncatula clone MTYFH_FI_FJ_FK1G-G-1 un...    38   2.0    2
(AE014135) Drosophila melanogaster chromosome 4, complete se...    38   2.0    10
(AC025639) Homo sapiens chromosome 22 clone RP11-433C20 map ...    38   2.1    3
(AC090463) Homo sapiens chromosome 15 clone RP11-348P16 map ...    40   2.2    7
(AC224548) Bos taurus clone CH240-482F19, WORKING DRAFT SEQU...    38   2.2    3
(DK267736) Drosophila auraria mRNA, adult full-length cDNA c...    42   2.3    2
(EG964077) AU_Ich_001A_G11 Whole organism normalized cDNA li...    40   2.3    2
(AC110566) Mus musculus chromosome 5, clone RP23-300A10, com...    40   2.4    3
(DK286638) Drosophila auraria mRNA, adult full-length cDNA c...    42   2.4    2
(AC205046) Mus musculus chromosome Y clone CH36-172J23, *** ...    32   2.4    6
(AC161283) Pan troglodytes BAC clone CH251-354N8 from chromo...    38   2.5    4
(AC179058) Strongylocentrotus purpuratus clone R3-4005J02, W...    38   2.6    2
(AC106138) Rattus norvegicus clone CH230-230N1, *** SEQUENCI...    38   2.6    4
(AL139384) Human DNA sequence from clone RP11-88E10 on chrom...    40   2.6    3
(AC169590) Bos taurus clone CH240-207E24, WORKING DRAFT SEQU...    40   2.8    3
(BF989185) CM1-GN0097-191000-469-a11 GN0097 Homo sapiens cDN...    40   2.9    2
(AC180629) Strongylocentrotus purpuratus clone R3-3090I2, WO...    40   2.9    4
(AL166032) Tetraodon nigroviridis genome survey sequence T7 ...    40   2.9    2
(CQ342731) Sequence 16825 from Patent WO0157275.                   42   2.9    2
(CQ305543) Sequence 16648 from Patent WO0186003.                   42   2.9    2
(CQ268507) Sequence 16768 from Patent WO0157277.                   42   2.9    2
(CQ230373) Sequence 17212 from Patent WO0157273.                   42   2.9    2
(CQ206930) Sequence 9207 from Patent WO0157271.                    42   2.9    2
(CQ182522) Sequence 13918 from Patent WO0157274.                   42   2.9    2
(CQ147139) Sequence 17161 from Patent WO0157276.                   42   2.9    2
(CQ108507) Sequence 17366 from Patent WO0157272.                   42   2.9    2
(CQ077489) Sequence 13289 from Patent WO0157278.                   42   2.9    2
(CQ058163) Sequence 8983 from Patent WO0157270.                    42   2.9    2
(AC172407) Strongylocentrotus purpuratus clone R3-14M21, WOR...    38   2.9    4
(DH578843) Rattus norvegicus DNA, BAC clone: RNB1-097A06, 3'...    40   2.9    2
(DL268918) METHODS FOR ANALYZING GENES OF INDUSTRIAL YEASTS.       40   3.0    2
(DJ135367) Method for identification of useful proteins deri...    40   3.0    2
(BF989193) CM1-GN0097-191000-469-e06 GN0097 Homo sapiens cDN...    40   3.0    2
(AC118214) Mus musculus chromosome 5, clone RP24-334D6, comp...    38   3.1    3
(BJ614162) Xenopus laevis cDNA clone:XL166o03, 5' end.             36   3.1    2
(BF947992) PM3-NN1174-301000-003-h12 NN1174 Homo sapiens cDN...    38   3.2    2
(FJ167870) Haliotis diversicolor clone aba235 microsatellite...    40   3.3    2
(BJ624562) Xenopus laevis cDNA clone:XL208o06, 5' end.             36   3.3    2
(CD113387) ME1-0030G-A106-F09-U.B ME1-0030 Schistosoma manso...    40   3.3    2
(BJ617364) Xenopus laevis cDNA clone:XL180h05, 5' end.             36   3.3    2
(CU467510) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    34   3.3    5
(DB691411) Solanum lycopersicum cDNA, clone: LEFL1042BG06, 5...    38   3.6    2
(EY368497) CAXA11838.rev CAXA Helobdella robusta Subtracted ...    40   3.6    2
(AZ196050) SP_1031_A2_E05_SP6E Strongylocentrotus purpuratus...    38   3.6    2
(FE779101) CCAG10568.b7 CCAG Petrolisthes cinctipes heart, g...    40   3.6    2
(DH544630) Rattus norvegicus DNA, BAC clone: RNB1-050L03, 5'...    42   3.6    2
(AC179872) Strongylocentrotus purpuratus clone R3-1007A14, W...    36   3.7    6
(EY341587) CAWZ11244.fwd CAWZ Helobdella robusta Primary Lat...    40   3.8    2
(DH447088) Macropus eugenii DNA with T3 primer, fosmid clone...    36   4.0    2
(FM020257) Dicentrarchus labrax EST, clone cDN31P0003B06, 5'...    36   4.0    2
(AC179302) Strongylocentrotus purpuratus clone R3-50B15, WOR...    38   4.0    4
(BV212291) OMM1663 GIS Microsatellite Repeat Enriched Librar...    40   4.0    2
(EI507099) MUGQ_CH252P225L18T7_CN377_069 CHORI-252 Vervet Mo...    42   4.1    2
(EJ217776) 1092351145155 Global-Ocean-Sampling_GS-27-01-01-1...    38   4.2    2
(AL190597) Tetraodon nigroviridis genome survey sequence PUC...    42   4.2    2
(DL464111) Anti- Claudin3 monoclonal antibody, and diagnosis...    36   4.2    2
(AL536380) human full-length cDNA 3-PRIME end of clone CS0DF...    34   4.3    2
(AC096010) Rattus norvegicus clone CH230-12F19, *** SEQUENCI...    42   4.5    3
(EV112650) 0117962 Brassica napus Senescent leaves Brassica ...    36   4.5    3
(DY892347) CeleSEQ10548 Cunninghamella elegans pBluescript (...    38   4.6    2
(BX406113) human full-length cDNA 3-PRIME end of clone CS0DM...    38   4.6    2
(AG986382) Hemicentrotus pulcherrimus BAC clone: BUB1-08N05_...    40   4.7    2
(AC201127) Strongylocentrotus purpuratus clone R3-14A16, WOR...    38   4.9    3
(AC160143) Pan troglodytes BAC clone CH251-565M18 from chrom...    40   5.1    4
(EK766629) 1093017103857 Global-Ocean-Sampling_GS-33-01-01-1...    40   5.1    2
(AC189536) Brassica rapa subsp. pekinensis clone KBrH003D18,...    40   5.1    4
(AC223686) Bos taurus clone CH240-461K13, WORKING DRAFT SEQU...    40   5.1    4
(AC179220) Strongylocentrotus purpuratus clone R3-41E1, WORK...    34   5.3    7
(AC010670) Drosophila melanogaster, chromosome 3R, region 94...    40   5.4    5
(AC181922) Strongylocentrotus purpuratus clone R3-1009M22, W...    40   5.6    3
(CZ170141) PSTVUpb17c4 VU.pGTR2.3.1 Mus musculus cDNA clone ...    40   5.7    2
(AC201193) Strongylocentrotus purpuratus clone R3-15B2, WORK...    38   5.9    2
(AL606630) Oryza sativa genomic DNA, chromosome 4, BAC clone...    36   5.9    4
(AC079481) Mus musculus clone RP23-158J13, WORKING DRAFT SEQ...    38   6.0    4
(AC108959) Rattus norvegicus clone CH230-85G16, *** SEQUENCI...    42   6.1    5
(AC176320) Strongylocentrotus purpuratus clone R3-3054H10, W...    38   6.2    5
(AC122850) Mus musculus BAC clone RP23-167J19 from 10, compl...    38   6.2    5
(EJ395748) 1093011996592 Global-Ocean-Sampling_GS-28-01-01-1...    30   6.3    3
(AC176013) Strongylocentrotus purpuratus clone R3-17N18, WOR...    40   6.5    5
(AC179515) Strongylocentrotus purpuratus clone R3-6B1, WORKI...    38   6.5    5
(EC819071) SME00003853 esmbsro2 Sawyeria marylandensis cDNA,...    38   6.6    2
(AC180049) Strongylocentrotus purpuratus clone R3-3030J14, W...    38   6.7    2
(AL583962) Human DNA sequence from clone LA20-VLA2066F10L on...    42   6.8    2
(AC231999) Solanum tuberosum chromosome 5 clone RH017K15, **...    38   6.8    7
(AW893104) CM1-NN0008-200300-152-g08 NN0008 Homo sapiens cDN...    34   6.9    2
(AC177661) Strongylocentrotus purpuratus clone R3-1017O4, WO...    38   6.9    4
(U39739) Drosophila melanogaster scarlet protein (st) gene, ...    38   7.0    2
(AC108238) Rattus norvegicus clone CH230-126G9, *** SEQUENCI...    40   7.0    4
(AL772132) Zebrafish DNA sequence from clone CH211-196N11.         44   7.1    1
(AY835442) HIV-1 isolate SS1196 clone 1 from USA envelope gl...    44   7.1    1
(AY669731) HIV-1 isolate 1196 from USA envelope glycoprotein...    44   7.1    1
(AF405829) HIV-1 clone 1P2-18 from USA envelope glycoprotein...    44   7.1    1
(AF405828) HIV-1 clone 1P2-15 from USA envelope glycoprotein...    44   7.1    1
(AF405827) HIV-1 clone 1P2-14 from USA envelope glycoprotein...    44   7.1    1
(AF405825) HIV-1 clone 1P2-12 from USA envelope glycoprotein...    44   7.1    1
(AF405824) HIV-1 clone 1P2-11 from USA envelope glycoprotein...    44   7.1    1
(AF405823) HIV-1 clone 1P2-10 from USA envelope glycoprotein...    44   7.1    1
(AF405820) HIV-1 clone 1P2-6 from USA envelope glycoprotein ...    44   7.1    1
(AF405819) HIV-1 clone 1P2-5 from USA envelope glycoprotein ...    44   7.1    1
(AF405818) HIV-1 clone 1P2-3 from USA envelope glycoprotein ...    44   7.1    1
(AF405817) HIV-1 clone 1P2-2 from USA envelope glycoprotein ...    44   7.1    1
(AF405816) HIV-1 clone 1P2-1 from USA envelope glycoprotein ...    44   7.1    1
(AF405815) HIV-1 clone 1M2-43 from USA envelope glycoprotein...    44   7.1    1
(AF405814) HIV-1 clone 1M2-42 from USA envelope glycoprotein...    44   7.1    1
(AF405813) HIV-1 clone 1M2-39 from USA envelope glycoprotein...    44   7.1    1
(AF405812) HIV-1 clone 1M2-36 from USA envelope glycoprotein...    44   7.1    1
(AF405809) HIV-1 clone 1M2-28 from USA envelope glycoprotein...    44   7.1    1
(AF405808) HIV-1 clone 1M2-23 from USA envelope glycoprotein...    44   7.1    1
(AF405807) HIV-1 clone 1M2-20 from USA envelope glycoprotein...    44   7.1    1
(AF405806) HIV-1 clone 1M2-18 from USA envelope glycoprotein...    44   7.1    1
(AF405804) HIV-1 clone 1M2-16 from USA envelope glycoprotein...    44   7.1    1
(AF405803) HIV-1 clone 1M2-12 from USA envelope glycoprotein...    44   7.1    1
(AF405802) HIV-1 clone 1M2-9 from USA envelope glycoprotein ...    44   7.1    1
(AF405801) HIV-1 clone 1M2-8 from USA envelope glycoprotein ...    44   7.1    1
(AF405800) HIV-1 clone 1M2-2 from USA envelope glycoprotein ...    44   7.1    1
(AF405790) HIV-1 clone 1A2-51 from USA envelope glycoprotein...    44   7.1    1
(AF405787) HIV-1 clone 1A2-16 from USA envelope glycoprotein...    44   7.1    1
(AF405786) HIV-1 clone 1A2-14 from USA envelope glycoprotein...    44   7.1    1
(AF405785) HIV-1 clone 1A2-11 from USA envelope glycoprotein...    44   7.1    1
(AF405784) HIV-1 clone 1A2-2 from USA envelope glycoprotein ...    44   7.1    1
(AF405781) HIV-1 clone 1R2-32 from USA envelope glycoprotein...    44   7.1    1
(AF405780) HIV-1 clone 1R2-31 from USA envelope glycoprotein...    44   7.1    1
(AF405779) HIV-1 clone 1R2-30 from USA envelope glycoprotein...    44   7.1    1
(AF405778) HIV-1 clone 1R2-29 from USA envelope glycoprotein...    44   7.1    1
(AF405777) HIV-1 clone 1R2-28 from USA envelope glycoprotein...    44   7.1    1
(AF405776) HIV-1 clone 1R2-27 from USA envelope glycoprotein...    44   7.1    1
(AF405774) HIV-1 clone 1R2-25 from USA envelope glycoprotein...    44   7.1    1
(AF405773) HIV-1 clone 1R2-20 from USA envelope glycoprotein...    44   7.1    1
(AF405772) HIV-1 clone 1R2-19 from USA envelope glycoprotein...    44   7.1    1
(AF405771) HIV-1 clone 1R2-16 from USA envelope glycoprotein...    44   7.1    1
(AF405770) HIV-1 clone 1R2-14 from USA envelope glycoprotein...    44   7.1    1
(AF405769) HIV-1 clone 1R2-13 from USA envelope glycoprotein...    44   7.1    1
(AF405768) HIV-1 clone 1R2-8 from USA envelope glycoprotein ...    44   7.1    1
(AF405767) HIV-1 clone 1R2-3 from USA envelope glycoprotein ...    44   7.1    1
(AF405766) HIV-1 clone 1M1-21 from USA envelope glycoprotein...    44   7.1    1
(AF405765) HIV-1 clone 1M1-20 from USA envelope glycoprotein...    44   7.1    1
(AF405764) HIV-1 clone 1M1-16 from USA envelope glycoprotein...    44   7.1    1
(AF405763) HIV-1 clone 1M1-15 from USA envelope glycoprotein...    44   7.1    1
(AF405762) HIV-1 clone 1M1-11 from USA envelope glycoprotein...    44   7.1    1
(AF405761) HIV-1 clone 1M1-9 from USA envelope glycoprotein ...    44   7.1    1
(AF405760) HIV-1 clone 1M1-7 from USA envelope glycoprotein ...    44   7.1    1
(AF405759) HIV-1 clone 1M1-6 from USA envelope glycoprotein ...    44   7.1    1
(AF405758) HIV-1 clone 1M1-5 from USA envelope glycoprotein ...    44   7.1    1
(AF405757) HIV-1 clone 1M1-4 from USA envelope glycoprotein ...    44   7.1    1
(AF405756) HIV-1 clone 1M1-3 from USA envelope glycoprotein ...    44   7.1    1
(AF405755) HIV-1 clone 1M1-2 from USA envelope glycoprotein ...    44   7.1    1
(AF405754) HIV-1 clone 1A1-38 from USA envelope glycoprotein...    44   7.1    1
(AF405752) HIV-1 clone 1A1-36 from USA envelope glycoprotein...    44   7.1    1
(AF405751) HIV-1 clone 1A1-35 from USA envelope glycoprotein...    44   7.1    1
(AF405750) HIV-1 clone 1A1-33 from USA envelope glycoprotein...    44   7.1    1
(AF405748) HIV-1 clone 1A1-28 from USA envelope glycoprotein...    44   7.1    1
(AF405747) HIV-1 clone 1A1-21 from USA envelope glycoprotein...    44   7.1    1
(AF405746) HIV-1 clone 1A1-19 from USA envelope glycoprotein...    44   7.1    1
(AF405745) HIV-1 clone 1A1-10 from USA envelope glycoprotein...    44   7.1    1
(AF405744) HIV-1 clone 1A1-3 from USA envelope glycoprotein ...    44   7.1    1
(AF405743) HIV-1 clone 1A1-2 from USA envelope glycoprotein ...    44   7.1    1
(AF405742) HIV-1 clone 1R1-32 from USA envelope glycoprotein...    44   7.1    1
(AF405741) HIV-1 clone 1R1-31 from USA envelope glycoprotein...    44   7.1    1
(AF405740) HIV-1 clone 1R1-30 from USA envelope glycoprotein...    44   7.1    1
(AF405739) HIV-1 clone 1R1-27 from USA envelope glycoprotein...    44   7.1    1
(AF405738) HIV-1 clone 1R1-26 from USA envelope glycoprotein...    44   7.1    1
(AF405737) HIV-1 clone 1R1-20 from USA envelope glycoprotein...    44   7.1    1
(AF405736) HIV-1 clone 1R1-6 from USA envelope glycoprotein ...    44   7.1    1
(AF405735) HIV-1 clone 1R1-5 from USA envelope glycoprotein ...    44   7.1    1
(AF405734) HIV-1 clone 1R1-4 from USA envelope glycoprotein ...    44   7.1    1
(AF405733) HIV-1 clone 1R1-3 from USA envelope glycoprotein ...    44   7.1    1
(AF405732) HIV-1 clone 1R1-2 from USA envelope glycoprotein ...    44   7.1    1
(AF405731) HIV-1 clone 1R1-1 from USA envelope glycoprotein ...    44   7.1    1
(AU047264) Rattus norvegicus, OTSUKA clone, 157b09, microsat...    44   7.1    1
(AC158616) Mus musculus 10 BAC RP23-227E23 (Roswell Park Can...    44   7.1    1
(AC141642) Mus musculus BAC clone RP23-274K4 from chromosome...    44   7.1    1
(AC121872) Mus musculus BAC clone RP24-122E10 from 12, compl...    44   7.1    1
(AC099695) Mus musculus chromosome 10, clone RP23-234P12, co...    44   7.1    1
(AC182736) Pan troglodytes BAC clone CH251-15A9 from chromos...    44   7.1    1
(AP009636) Lotus japonicus genomic DNA, clone: LjB12N13, BM1...    44   7.1    1
(AC144930) Medicago truncatula clone mth2-15e11, complete se...    44   7.1    1
(GC698488) Sequence 13733 from patent US 6812339.                  44   7.1    1
(AC188655) Canis Familiaris chromosome 1, clone XX-451O16, c...    44   7.1    1
(U40802) Caenorhabditis elegans cosmid ZC477, complete seque...    44   7.1    1
(J04804) C.elegans vinculin (deb-1) gene, complete cds.            44   7.1    1
(AM182594) Ensis siliqua microsatellite DNA, clone 17.511.         44   7.1    1
(AJ005375) Drosophila orena hunchback region.                      44   7.1    1
(AF461329) Drosophila teissieri hunchback (hb) gene, partial...    44   7.1    1
(AF156227) Drosophila melanogaster salivary gland secretion ...    44   7.1    1
(DQ667174) Homo sapiens protein kinase, cAMP-dependent, cata...    44   7.1    1
(AL451136) Human DNA sequence from clone RP11-291L19 on chro...    44   7.1    1
(AL450063) Human DNA sequence from clone RP11-82H13 on chrom...    44   7.1    1
(AC160166) Bos taurus clone CH240-80N12, WORKING DRAFT SEQUE...    44   7.1    1
(AC142437) Rattus norvegicus clone CH230-48H22, WORKING DRAF...    44   7.1    1
(AC135880) Rattus norvegicus clone CH230-381B23, *** SEQUENC...    44   7.1    1
(AC124873) Rattus norvegicus clone CH230-23M5, *** SEQUENCIN...    44   7.1    1
(AC120821) Rattus norvegicus clone CH230-45N2, WORKING DRAFT...    44   7.1    1
(AC117942) Tetraodon nigroviridis clone GSTNB-27D21, WORKING...    44   7.1    1
(AC115181) Rattus norvegicus clone CH230-106B6, WORKING DRAF...    44   7.1    1
(AC111901) Rattus norvegicus clone CH230-65B24, WORKING DRAF...    44   7.1    1
(AC103157) Rattus norvegicus clone CH230-201C16, *** SEQUENC...    44   7.1    1
(AC099143) Rattus norvegicus clone CH230-52G8, *** SEQUENCIN...    44   7.1    1
(AC095319) Rattus norvegicus clone CH230-46P23, *** SEQUENCI...    44   7.1    1
(AC069041) Homo sapiens chromosome 1 clone RP11-307H8 map 1,...    44   7.1    1
(AC027046) Homo sapiens chromosome 1 clone RP11-604O8 map 1,...    44   7.1    1
(CT826395) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   7.1    1
(AC220236) Bos taurus clone CH240-367C6, WORKING DRAFT SEQUE...    44   7.1    1
(AC219676) Bos taurus clone CH240-325N20, WORKING DRAFT SEQU...    44   7.1    1
(AC202370) Medicago truncatula clone mth2-7a20, WORKING DRAF...    44   7.1    1
(AC201589) Strongylocentrotus purpuratus clone R3-4019B8, WO...    44   7.1    1
(AC184624) Strongylocentrotus purpuratus clone R3-3027F9, WO...    44   7.1    1
(AC181108) Strongylocentrotus purpuratus clone R3-3042M15, W...    44   7.1    1
(AC180870) Strongylocentrotus purpuratus clone R3-3067H22, W...    44   7.1    1
(AC178120) Strongylocentrotus purpuratus clone R3-3074J24, W...    44   7.1    1
(AC175882) Strongylocentrotus purpuratus clone R3-15C9, WORK...    44   7.1    1
(AC174505) Strongylocentrotus purpuratus clone R3-3074C23, W...    44   7.1    1
(AC025492) Homo sapiens chromosome 1 clone RP11-199H12 map 1...    44   7.1    1
(EK375862) 1095469439181 Global-Ocean-Sampling_GS-31-01-01-1...    44   7.1    1
(AL409009) T3 end of clone AV0AA012A07 of library AV0AA from...    44   7.1    1
(AL259924) Tetraodon nigroviridis genome survey sequence PUC...    44   7.1    1
(DE220286) Trifolium pratense DNA, clone:RCG11338.                 44   7.1    1
(EL410451) CFFS8058.b1_D24.ab1 CFF(LMS) safflower Carthamus ...    44   7.1    1
(EG361033) SA_RG0_63h11_SP6 Dogfish Shark Rectal Gland, Norm...    44   7.1    1
(EE887574) Sa_rcgd_11B21_M13R-29 Spiny dogfish shark rectal ...    44   7.1    1
(EB502767) 1099476361656 12-DrosW-norm-1P5Kb Drosophila will...    44   7.1    1
(EB497713) 1099435215085 12-DrosW-norm-1P5Kb Drosophila will...    44   7.1    1
(EB491085) 1099341391935 12-DrosW-norm-1P5Kb Drosophila will...    44   7.1    1
(EB460968) 1099435283033 12-DrosW-std-1P6Kb Drosophila willi...    44   7.1    1
(DV602130) EST1205125 Glossina morsitans morsitans Fat body ...    44   7.1    1
(DV602129) EST1205124 Glossina morsitans morsitans Fat body ...    44   7.1    1
(DC227847) Plasmodium berghei strain ANKA cDNA clone:SG01033...    44   7.1    1
(CK685287) ZF101-P00037-DEPE-F_A13 GISZF001_ra Danio rerio c...    44   7.1    1
(BB979229) Plasmodium berghei str. ANKA cDNA clone: OK009298...    44   7.1    1
(BB977151) Plasmodium berghei str. ANKA cDNA clone: OK007109...    44   7.1    1
(BB975508) Plasmodium berghei str. ANKA cDNA clone: OK005340...    44   7.1    1
(FC854805) CBHN8697.rev CBHN Metridium senile tentacle Metri...    44   7.1    1
(FC000367) CATH7057.fwd CATH Sporobolomyces roseus IAM 13481...    44   7.1    1
(FC000366) CATH7057.rev CATH Sporobolomyces roseus IAM 13481...    44   7.1    1
(EY979310) CATH10742.rev CATH Sporobolomyces roseus IAM 1348...    44   7.1    1
(EV811634) 030120FAAD004466HT (FAAD) Epiphyas postvittana ma...    44   7.1    1
(EV810084) 030115FAAD002651HT (FAAD) Epiphyas postvittana ma...    44   7.1    1
(CP000961) Shewanella woodyi ATCC 51908, complete genome.          44   7.1    1
(AC018678) Homo sapiens BAC clone RP11-279E17 from 2, comple...    38   7.1    5
(CN223357) WLA048G11.ab1 WLbrain Gallus gallus cDNA 5', mRNA...    40   7.2    2
(AC026337) Homo sapiens 2 BAC RP11-105E24 (Roswell Park Canc...    38   7.2    5
(CN807759) HDAH10E03.F Leech Haementeria depressa library HD...    40   7.2    2
(AC126879) Rattus norvegicus clone CH230-261N3, *** SEQUENCI...    40   7.5    4
(AC213013) Populus trichocarpa clone POP018-B03, complete se...    34   7.5    7
(AC201052) Strongylocentrotus purpuratus clone R3-12N16, WOR...    38   7.6    2
(AL772286) Human DNA sequence *** SEQUENCING CANCELLED *** f...    38   7.7    4
(BX296552) Zebrafish DNA sequence from clone CH211-247P22.         36   7.7    3
(AM464448) Vitis vinifera contig VV78X273139.15, whole genom...    38   7.7    2
(AC201180) Strongylocentrotus purpuratus clone R3-14N21, WOR...    38   7.9    3
(EC774769) EST 11265 Guarana fruits cDNA library Paullinia c...    36   8.0    2
(AC180177) Strongylocentrotus purpuratus clone R3-4001H10, W...    38   8.0    2
(AL355916) Human chromosome 14 DNA sequence BAC R-47I22 of l...    38   8.2    5
(AC063925) Homo sapiens chromosome 3 clone RP11-129H12, WORK...    32   8.2    7
(DY251134) PMAH-aaa08h04.g1 Lamprey_EST_Olfactory Petromyzon...    40   8.2    2
(Z34533) Caenorhabditis elegans Cosmid B0285.                      40   8.3    3
(EC225384) 348179 CK01 Drosophila melanogaster cDNA clone 10...    40   8.3    2
(DH777501) Rattus norvegicus DNA, BAC clone: RNB1-364J13, 5'...    40   8.4    2
(EX551554) AIAE-aab24d05.g1 Ancylostoma_caninum_EST_Female_p...    36   8.4    2
(AC073576) Homo sapiens 12 BAC RP11-363M20 (Roswell Park Can...    38   8.5    5
(EH010846) USDA-FP_183904 Lysiphlebus testaceipes adult whol...    38   8.6    2
(CU633621) Zebrafish DNA sequence from clone CH1073-395N8 in...    38   8.6    2
(AC123845) Mus musculus chromosome UNK clone RP23-421K20, WO...    34   8.8    5
(AC124536) Mus musculus BAC clone RP23-332H4 from chromosome...    40   8.8    4
(EY329328) CAWY2258.rev CAWY Helobdella robusta Subtracted E...    34   8.8    2
(EC820322) SME00004212 esmbsro2 Sawyeria marylandensis cDNA,...    38   8.8    2
(BX510360) Zebrafish DNA sequence from clone DKEY-265A7 in l...    32   8.9    6
(BF566802) UI-R-BJ0p-afm-d-10-0-UI.r1 UI-R-BJ0p Rattus norve...    40   8.9    2
(CQ329987) Sequence 4081 from Patent WO0157275.                    42   9.0    2
(CQ293013) Sequence 4118 from Patent WO0186003.                    42   9.0    2
(CQ255916) Sequence 4177 from Patent WO0157277.                    42   9.0    2
(CQ217353) Sequence 4192 from Patent WO0157273.                    42   9.0    2
(CQ201800) Sequence 4077 from Patent WO0157271.                    42   9.0    2
(CQ172616) Sequence 4012 from Patent WO0157274.                    42   9.0    2
(CQ134106) Sequence 4128 from Patent WO0157276.                    42   9.0    2
(CQ095358) Sequence 4217 from Patent WO0157272.                    42   9.0    2
(CQ068279) Sequence 4079 from Patent WO0157278.                    42   9.0    2
(CQ053165) Sequence 3985 from Patent WO0157270.                    42   9.0    2
(CB155228) K-EST0213427 B2N807043 Homo sapiens cDNA clone B2...    34   9.0    2
(AC181280) Strongylocentrotus purpuratus clone R3-4015K12, W...    36   9.0    6
(FJ527627) Chydaekata sp. E TLF-2008 microsatellite chy_D116...    36   9.1    2
(AC184453) Strongylocentrotus purpuratus clone R3-3086H18, W...    38   9.1    4
(AC018450) Homo sapiens 3 BAC RP11-80H8 (Roswell Park Cancer...    38   9.3    3
(EC246487) 308218 CK01 Drosophila melanogaster cDNA clone 62...    40   9.4    2
(CO544386) LyEST12150 Sea lamprey LyEST Petromyzon marinus c...    40   9.4    2
(AZ637762) 1M0497N15F Mouse 10kb plasmid UUGC1M library Mus ...    40   9.4    2
(AG954133) Drosophila sechellia DNA, clone: DSE1-007H13.F.fa...    40   9.5    2
(AC179896) Strongylocentrotus purpuratus clone R3-1003P23, W...    38   9.7    3
(AC161874) Mus musculus BAC clone RP24-177G20 from chromosom...    38   9.8    2
(AC179076) Strongylocentrotus purpuratus clone R3-4009G6, WO...    42   9.9    2
(AC020026) Drosophila melanogaster, *** SEQUENCING IN PROGRE...    40   9.9    5
(CV387407) QV1-HB0031-141200-578-e05 HB0031 Homo sapiens cDN...    40   9.9    2
(AC024111) Mus musculus chromosome 11 clone RP23-281A22, WOR...    38   10.0   3

>(C92269) Dictyostelium discoideum slug cDNA, clone SSD317.
          Length = 658

 Score =  539 bits (272), Expect(4) = 0.0
 Identities = 287/292 (98%)
 Strand = Plus / Plus


Query: 267 atcaagtcaagtcaatagttcgaaaccaagatgtagatcacattctagagattatatcga 326
           ||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||
Sbjct: 230 atcaagtcaagtcaatagttcaaaaccaagatctagatcacattctagagattatatcga 289


Query: 327 aagtgaaattgccatatatctcctcaataatagtgagaaacaaatacctttatcaccaac 386
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 aagtgaaattgccaaatatctcctcaataatagtgagaaacaaatacctttatcaccaac 349


Query: 387 aaagaagagatcattatcaaatcaatttcaccaagatggaggtaataataccaccgatgg 446
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 aaagaagagatcattatcaaatcaatttcaccaagatggaggtaataataccaccgatgg 409


Query: 447 taacttgtttaataattttagtaccaatggaggaggtaatagaacaaatattgatgattc 506
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 taacttgtttaataattttagtaccaatggaggaggtaatagaacaaatattgatgattc 469


Query: 507 cataatacaatcaatattggaatcaccatcatcatcatcactcaaatatagt 558
           ||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 470 cataaaacaatcaatattggaatcaccatcatcatcatcactcaaatctagt 521

 Score =  202 bits (102), Expect(4) = 0.0
 Identities = 102/102 (100%)
 Strand = Plus / Plus


Query: 163 tttcaagatttattaaaggaaagttattacaaaaacaacagaaaatctataaagatttag 222
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 127 tttcaagatttattaaaggaaagttattacaaaaacaacagaaaatctataaagatttag 186


Query: 223 aaagattcgagcattctcgtcagcagcaacatcatcaccacc 264
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 187 aaagattcgagcattctcgtcagcagcaacatcatcaccacc 228

 Score =  135 bits (68), Expect(4) = 0.0
 Identities = 68/68 (100%)
 Strand = Plus / Plus


Query: 580 ccattcttacctccactttcgacattagttcatatcttagttacttttatcattcttagt 639
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 543 ccattcttacctccactttcgacattagttcatatcttagttacttttatcattcttagt 602


Query: 640 gcattttt 647
           ||||||||
Sbjct: 603 gcattttt 610

 Score = 73.8 bits (37), Expect(4) = 0.0
 Identities = 37/37 (100%)
 Strand = Plus / Plus


Query: 36 agatatgccggtgatattggattcatttatgcagagg 72
          |||||||||||||||||||||||||||||||||||||
Sbjct: 1  agatatgccggtgatattggattcatttatgcagagg 37

 Score = 99.6 bits (50), Expect = 1e-16
 Identities = 50/50 (100%)
 Strand = Plus / Plus


Query: 648 gtgcattttttatgtctttaccctcaaattaaaaatgtaaaattaatttc 697
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 gtgcattttttatgtctttaccctcaaattaaaaatgtaaaattaatttc 650

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 102105510
Number of Hits to DB: 809,768,243
Number of extensions: 53387949
Number of successful extensions: 5670361
Number of sequences better than 10.0: 450
Length of query: 697
Length of database: 101,790,757,118
Length adjustment: 24
Effective length of query: 673
Effective length of database: 99,340,224,878
Effective search space: 66855971342894
Effective search space used: 66855971342894
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7.31
Homology vs Protein 
Query= Contig-U04840-1 (Contig-U04840-1Q) /CSM_Contig/Contig-U04840-1Q.Seq.d
         (697 letters)

Database: nrp_A
           3,268,448 sequences; 1,061,185,681 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q9U7C9) RecName: Full=Nucleomorphin; AltName: Full=Calmodulin-b...   173   3e-53
AC117176_63(AC117176|pid:none) Dictyostelium discoideum chromoso...    36   1.0
(P36417) RecName: Full=G-box-binding factor;          Short=GBF;       30   2.2
DQ925464_1(DQ925464|pid:none) Dasheen mosaic virus isolate DsMV-...    35   2.9
(Q54VI1) RecName: Full=Probable serine/threonine-protein kinase ...    34   3.8
(Q86HQ3) RecName: Full=SPX and EXS domain-containing protein 2; ...    34   3.8
AF045453_1(AF045453|pid:none) Dictyostelium discoideum protein k...    34   3.8
(Q54QV3) RecName: Full=Probable serine/threonine-protein kinase ...    34   3.8
AC115592_30(AC115592|pid:none) Dictyostelium discoideum chromoso...    34   5.0
AL034559_46(AL034559|pid:none) Plasmodium falciparum MAL3P7, com...    34   5.0
AC114265_7(AC114265|pid:none) Dictyostelium discoideum chromosom...    34   5.0
AE014188_356(AE014188|pid:none) Plasmodium falciparum 3D7 chromo...    33   6.5
(Q54JC7) RecName: Full=Probable serine/threonine-protein kinase ...    33   8.5
AC117080_22(AC117080|pid:none) Dictyostelium discoideum chromoso...    33   8.5

>(Q9U7C9) RecName: Full=Nucleomorphin; AltName:
            Full=Calmodulin-binding protein A; AltName:
            Full=Calmodulin-binding protein CaM-BP38;
            &AY631855_1(AY631855|pid:none)
          Length = 756

 Score =  173 bits (438), Expect(3) = 3e-53
 Identities = 92/126 (73%), Positives = 92/126 (73%)
 Frame = +1

Query: 268  SSQVNSSKPRCRSHSRDYIESEIAIYLLNNSEKQIPLSPTKKRSLSNQFHQDGGNNTTDG 447
            SSQVNSSKPR RSHSRDYIESEIA YLLNNSEKQIPLSPTKKRSLSNQFHQDGGNNTTDG
Sbjct: 624  SSQVNSSKPRSRSHSRDYIESEIAKYLLNNSEKQIPLSPTKKRSLSNQFHQDGGNNTTDG 683

Query: 448  NLFNNFSTNGGGNRTNIDDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTLVHILVTF 627
            NLFNNFSTNGGGNRTNIDD                                TLVHILVTF
Sbjct: 684  NLFNNFSTNGGGNRTNIDDSIKQSILESPSSSSLKSSKSKKSKKPFLPPLSTLVHILVTF 743

Query: 628  IILSAF 645
            IILSAF
Sbjct: 744  IILSAF 749

 Score = 57.8 bits (138), Expect(3) = 3e-53
 Identities = 29/40 (72%), Positives = 30/40 (75%)
 Frame = +3

Query: 162 VSRFIKGXXXXXXXXIYKDLERFEHSRQQQHHHHLIKSSQ 281
           VSRFIKG        IYKDLERFEHSRQQQHHHH  +SSQ
Sbjct: 589 VSRFIKGKLLQKQQKIYKDLERFEHSRQQQHHHH--QSSQ 626

 Score = 22.3 bits (46), Expect(3) = 3e-53
 Identities = 9/9 (100%), Positives = 9/9 (100%)
 Frame = +2

Query: 650 AFFMSLPSN 676
           AFFMSLPSN
Sbjct: 748 AFFMSLPSN 756

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3268448
Number of Hits to DB: 862,771,085
Number of extensions: 14093415
Number of successful extensions: 47142
Number of sequences better than 10.0: 14
Number of HSP's gapped: 45476
Number of HSP's successfully gapped: 17
Length of query: 232
Length of database: 1,061,185,681
Length adjustment: 124
Effective length of query: 108
Effective length of database: 655,898,129
Effective search space: 70836997932
Effective search space used: 70836997932
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 31 (16.5 bits)
PSORT 

 psg: 0.40  gvh: 0.30  alm: 0.16  top: 0.43  tms: 0.07  mit: 0.45  mip: 0.03
 nuc: 0.06  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.04  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 1.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 20.0 %: cytoplasmic
	 20.0 %: vesicles of secretory system
	 16.0 %: nuclear
	 12.0 %: mitochondrial
	  8.0 %: Golgi
	  8.0 %: endoplasmic reticulum
	  8.0 %: plasma membrane
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar

>> prediction for Contig-U04840-1 is cyt
VS (DIR, S) 1
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 1
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0