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Dicty_cDB
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U04814-1
Contig ID Contig-U04814-1
Contig update 2001. 8.29
Contig sequence 
>Contig-U04814-1 (Contig-U04814-1Q) /CSM_Contig/Contig-U04814-1Q.Seq.d
ATTTAAATTAAATTATTTTAATATTATAATCATTTTCAATATAAAAAAAA
AAAAAAAAAAAAAAATAATTATTTTTTTAATCTTATAAAAATACAAGATG
GTTTCCTTTGAATTAAATGAAGAAGAATTTAAAATTCTTGAAGATTTAAC
AAATGACGAATTAATTGCATTAAGTAAATTTAAAGATTTTCCNATTTGCA
AAGATATAAAAGATCAATATTTATTATTATTTTTATTTTCAAAGAAATTT
GATTTAGAAAAAGCACATACATTAATTAAAAACAATTTATTAATAAGGGA
GAAATTAGAAATTAGTTTACCAGTTGTTAAAAATCAAGTTAATCCAGAAT
TGGCAATGAAATCAAGTAGTTTTAATATTATTGGCTATAGAGATAATAAT
GGTTGTTCAATTTCATATTTACATCCATCAAAAGCGAAACCAAAGGATTT
TACATTAAAAGAATATATGACATTTTTACTTTGGTCACAAGATCAAAGTG
CACATGATCATTCATCAGTTCATAGAAATGGTATGACAATTATTGAAGAT
TTACATAAAATATCAATTTTTAAACATTTTGATTCAAGATTACAAGATTA
CAAGATTTTCTTAAAAAGAATAAATTAAATGATATGCAAGATGTTTTCAT
TGGTAGAATTCAAAAAATTTATATTTTAAATCCACCATGGGTATTAAAAC
CATTATTATCACTTGCTAAAACTTTTATGAAGAATAAATTAATTTCAAGA
ATTGAAATTTGTAAAAATGATCAAATCTTTACAACTATTGATCAATCAAA
AGTTTTATTTGAATATGGTGGCACATTAAATTTAACATATATTGATTATT
TTAATTCATTACCTTCTAATTTTTAAAAAAAAAAAGTAAAAAAAAAAAAA
AAAAAAAAAAAAAAA
Gap no gap
Contig length 915
Chromosome number (1..6, M) 3
Chromosome length 6358359
Start point 170455
End point 169539
Strand (PLUS/MINUS) MINUS
Number of clones 3
Number of EST 3
Link to clone list U04814
List of clone(s) 

est1=SSD188E,1,668
est2=SSI332Z,347,902
est3=SSF196F,603,916
Translated Amino Acid sequence 
fklnyfniiiifnikkkkkkkiiiflil*KYKMVSFELNEEEFKILEDLTNDELIALSKF
KDFPICKDIKDQYLLLFLFSKKFDLEKAHTLIKNNLLIREKLEISLPVVKNQVNPELAMK
SSSFNIIGYRDNNGCSISYLHPSKAKPKDFTLKEYMTFLLWSQDQSAHDHSSVHRNGMTI
IEDLHKISIFKHFDSRLQDYKIFLKRIN*mickmfslvefkkfif*ihhgy*nhyyhllk
ll*rin*fqelkfvkmikslqllinqkfylnmvah*i*hiliilihyllifkkkk*kkkk
kkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
i*iklf*yynhfqykkkkkkknnyffnlikiqdgfl*ik*rri*ns*rfnk*rincik*i
*rfsxlqrykrsifiiififkei*frkstyin*kqfinkgeirn*ftsc*kss*srigne
ik*f*yywl*r**wlfnfiftsiksetkgfyikriydiftlvtrskct*sfiss*kwydn
y*rft*ninf*tf*fkitrlqdflkknklndmqdvfigriqkiyilnppwvlkpllslak
tfmknklisrieickndqifttidqskvlfeyggtlnltyidyfnslpsnf*kkkvkkkk
kkkkk


Frame B:
fklnyfniiiifnikkkkkkkiiiflil*KYKMVSFELNEEEFKILEDLTNDELIALSKF
KDFPICKDIKDQYLLLFLFSKKFDLEKAHTLIKNNLLIREKLEISLPVVKNQVNPELAMK
SSSFNIIGYRDNNGCSISYLHPSKAKPKDFTLKEYMTFLLWSQDQSAHDHSSVHRNGMTI
IEDLHKISIFKHFDSRLQDYKIFLKRIN*mickmfslvefkkfif*ihhgy*nhyyhllk
ll*rin*fqelkfvkmikslqllinqkfylnmvah*i*hiliilihyllifkkkk*kkkk
kkkk


Frame C:
ln*iilil*sfsi*kkkkkkk*lff*sykntrwfpln*mkknlkflki*qmtn*lh*vnl
kifxfaki*kiniyyyfyfqrnli*kkhih*lktiy**grn*klvyqllkikliqnwq*n
qvvlillaieiimvvqfhiyihqkrnqrilh*kni*hfyfghkikvhmiihqfiemv*ql
lkiyikyqflniliqdykitrfs*ke*ik*yarcfhw*nsknlyfkstmgiktiiitc*n
fyee*infkn*nl*k*snlyny*siksfi*iwwhikfniy*lf*fitf*flkkkskkkkk
kkkk
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U04814-1 (Contig-U04814-1Q)
/CSM_Contig/Contig-U04814-1Q.Seq.d
         (915 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U04814-1 (Contig-U04814-1Q) /CSM_Contig/Conti...  1259  0.0
Contig-U12240-1 (Contig-U12240-1Q) /CSM_Contig/Conti...    42  0.001
Contig-U13903-1 (Contig-U13903-1Q) /CSM_Contig/Conti...    36  0.064
Contig-U12927-1 (Contig-U12927-1Q) /CSM_Contig/Conti...    36  0.064
Contig-U12656-1 (Contig-U12656-1Q) /CSM_Contig/Conti...    36  0.064
Contig-U12382-1 (Contig-U12382-1Q) /CSM_Contig/Conti...    36  0.064
Contig-U12064-1 (Contig-U12064-1Q) /CSM_Contig/Conti...    36  0.064
Contig-U11442-1 (Contig-U11442-1Q) /CSM_Contig/Conti...    36  0.064
Contig-U11083-1 (Contig-U11083-1Q) /CSM_Contig/Conti...    36  0.064
Contig-U12941-1 (Contig-U12941-1Q) /CSM_Contig/Conti...    30  4.0

>Contig-U04814-1 (Contig-U04814-1Q) /CSM_Contig/Contig-U04814-1Q.Seq.d
          Length = 915

 Score = 1259 bits (635), Expect = 0.0
 Identities = 635/635 (100%)
 Strand = Plus / Plus

                                                                       
Query: 240 caaagaaatttgatttagaaaaagcacatacattaattaaaaacaatttattaataaggg 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 caaagaaatttgatttagaaaaagcacatacattaattaaaaacaatttattaataaggg 299

                                                                       
Query: 300 agaaattagaaattagtttaccagttgttaaaaatcaagttaatccagaattggcaatga 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 agaaattagaaattagtttaccagttgttaaaaatcaagttaatccagaattggcaatga 359

                                                                       
Query: 360 aatcaagtagttttaatattattggctatagagataataatggttgttcaatttcatatt 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 aatcaagtagttttaatattattggctatagagataataatggttgttcaatttcatatt 419

                                                                       
Query: 420 tacatccatcaaaagcgaaaccaaaggattttacattaaaagaatatatgacatttttac 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 tacatccatcaaaagcgaaaccaaaggattttacattaaaagaatatatgacatttttac 479

                                                                       
Query: 480 tttggtcacaagatcaaagtgcacatgatcattcatcagttcatagaaatggtatgacaa 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 tttggtcacaagatcaaagtgcacatgatcattcatcagttcatagaaatggtatgacaa 539

                                                                       
Query: 540 ttattgaagatttacataaaatatcaatttttaaacattttgattcaagattacaagatt 599
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 ttattgaagatttacataaaatatcaatttttaaacattttgattcaagattacaagatt 599

                                                                       
Query: 600 acaagattttcttaaaaagaataaattaaatgatatgcaagatgttttcattggtagaat 659
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 600 acaagattttcttaaaaagaataaattaaatgatatgcaagatgttttcattggtagaat 659

                                                                       
Query: 660 tcaaaaaatttatattttaaatccaccatgggtattaaaaccattattatcacttgctaa 719
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 660 tcaaaaaatttatattttaaatccaccatgggtattaaaaccattattatcacttgctaa 719

                                                                       
Query: 720 aacttttatgaagaataaattaatttcaagaattgaaatttgtaaaaatgatcaaatctt 779
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 720 aacttttatgaagaataaattaatttcaagaattgaaatttgtaaaaatgatcaaatctt 779

                                                                       
Query: 780 tacaactattgatcaatcaaaagttttatttgaatatggtggcacattaaatttaacata 839
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 780 tacaactattgatcaatcaaaagttttatttgaatatggtggcacattaaatttaacata 839

                                              
Query: 840 tattgattattttaattcattaccttctaattttt 874
           |||||||||||||||||||||||||||||||||||
Sbjct: 840 tattgattattttaattcattaccttctaattttt 874


 Score =  270 bits (136), Expect = 2e-72
 Identities = 139/139 (100%)
 Strand = Plus / Plus

                                                                       
Query: 79  aatcttataaaaatacaagatggtttcctttgaattaaatgaagaagaatttaaaattct 138
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79  aatcttataaaaatacaagatggtttcctttgaattaaatgaagaagaatttaaaattct 138

                                                                       
Query: 139 tgaagatttaacaaatgacgaattaattgcattaagtaaatttaaagattttccnatttg 198
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139 tgaagatttaacaaatgacgaattaattgcattaagtaaatttaaagattttccnatttg 198

                              
Query: 199 caaagatataaaagatcaa 217
           |||||||||||||||||||
Sbjct: 199 caaagatataaaagatcaa 217


 Score = 83.8 bits (42), Expect = 3e-16
 Identities = 42/42 (100%)
 Strand = Plus / Plus

                                                    
Query: 1  atttaaattaaattattttaatattataatcattttcaatat 42
          ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  atttaaattaaattattttaatattataatcattttcaatat 42


>Contig-U12240-1 (Contig-U12240-1Q) /CSM_Contig/Contig-U12240-1Q.Seq.d
          Length = 1032

 Score = 42.1 bits (21), Expect = 0.001
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 9   taaattattttaatattataa 29
           |||||||||||||||||||||
Sbjct: 163 taaattattttaatattataa 183


>Contig-U13903-1 (Contig-U13903-1Q) /CSM_Contig/Contig-U13903-1Q.Seq.d
          Length = 1303

 Score = 36.2 bits (18), Expect = 0.064
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                            
Query: 13 ttattttaatattataat 30
          ||||||||||||||||||
Sbjct: 80 ttattttaatattataat 97


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 23,301
Number of Sequences: 6905
Number of extensions: 23301
Number of successful extensions: 2824
Number of sequences better than 10.0: 331
length of query: 915
length of database: 5,674,871
effective HSP length: 16
effective length of query: 899
effective length of database: 5,564,391
effective search space: 5002387509
effective search space used: 5002387509
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2009. 7. 2
Homology vs DNA 
Query= Contig-U04814-1 (Contig-U04814-1Q) /CSM_Contig/Contig-U04814-1Q.Seq.d
         (915 letters)

Database: ddbj_A
           102,105,510 sequences; 101,790,757,118 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(C92175) Dictyostelium discoideum slug cDNA, clone SSD188.        622   0.0    3
(C90380) Dictyostelium discoideum slug cDNA, clone SSI332.        559   e-155  1
(AU072831) Dictyostelium discoideum slug cDNA, clone SSF196.      476   e-130  1
(AU072015) Dictyostelium discoideum slug cDNA, clone SSD188.      254   8e-82  3
(AE009951) Fusobacterium nucleatum subsp. nucleatum ATCC 255...    36   2e-06  21
(CU469464) Candidatus Phytoplasma mali strain AT complete ch...    38   4e-05  17
(AC116986) Dictyostelium discoideum chromosome 2 map 2234041...    38   5e-05  15
(AC116305) Dictyostelium discoideum chromosome 2 map 1005175...    40   6e-05  15
(CP000395) Borrelia afzelii PKo, complete genome.                  38   9e-05  18
(AM285303) Spiroplasma citri GII3-3X chromosome, contig Cont...    34   3e-04  8
(CP000263) Buchnera aphidicola str. Cc (Cinara cedri), compl...    34   3e-04  17
(CP001056) Clostridium botulinum B str. Eklund 17B, complete...    50   3e-04  20
(AE014837) Plasmodium falciparum 3D7 chromosome 11 section 2...    36   4e-04  14
(AE017245) Mycoplasma synoviae 53, complete genome.                40   4e-04  17
(Z98551) Plasmodium falciparum MAL3P6.                             32   5e-04  12
(AC116957) Dictyostelium discoideum chromosome 2 map 1685067...    32   5e-04  14
(CS468878) Sequence 69 from Patent EP1748080.                      36   5e-04  12
(CS468877) Sequence 68 from Patent EP1748080.                      36   5e-04  12
(CS419355) Sequence 69 from Patent WO2006094836.                   36   5e-04  12
(CS419354) Sequence 68 from Patent WO2006094836.                   36   5e-04  12
(AF063866) Melanoplus sanguinipes entomopoxvirus, complete g...    34   0.001  14
(AE015927) Clostridium tetani E88, complete genome.                36   0.001  21
(AE017332) Mycoplasma hyopneumoniae 232, complete genome.          32   0.001  19
(CP001078) Clostridium botulinum E3 str. Alaska E43, complet...    50   0.001  19
(AM285304) Spiroplasma citri GII3-3X chromosome, contig Cont...    32   0.002  17
(AL844506) Plasmodium falciparum chromosome  7.                    34   0.002  19
(AB236337) Clostridium perfringens F5603 plasmid pCPF5603 DN...    30   0.003  10
(CP000728) Clostridium botulinum F str. Langeland, complete ...    36   0.004  17
(AE014826) Plasmodium falciparum 3D7 chromosome 14 section 1...    36   0.004  13
(CP000997) Borrelia recurrentis A1 plasmid pl35, complete se...    38   0.004  5
(AL844509) Plasmodium falciparum chromosome 13.                    36   0.006  18
(AC189253) Brassica rapa subsp. pekinensis clone KBrB019N06,...    40   0.009  6
(AE016826) Buchnera aphidicola str. Bp (Baizongia pistaciae)...    38   0.009  15
(AC116924) Dictyostelium discoideum chromosome 2 map 6357117...    36   0.010  10
(AF222894) Ureaplasma parvum serovar 3 str. ATCC 700970, com...    38   0.010  17
(AE000783) Borrelia burgdorferi B31, complete genome.              38   0.011  20
(BD061520) Genome DNA of symbiotic bacteria of aphid.              34   0.012  17
(AR409405) Sequence 1 from patent US 6632935.                      34   0.012  17
(BA000003) Buchnera aphidicola str. APS (Acyrthosiphon pisum...    34   0.012  17
(AP006716) Staphylococcus haemolyticus JCSC1435 DNA, complet...    36   0.013  23
(AE017308) Mycoplasma mobile 163K complete genome.                 32   0.014  16
(DX511463) 643_5_14167626_5489_43569_032 Arachis duranensis ...    38   0.014  3
(AE014834) Plasmodium falciparum 3D7 chromosome 10 section 6...    36   0.016  12
(AC117176) Dictyostelium discoideum chromosome 2 map 5018074...    32   0.018  10
(AC124959) Medicago truncatula clone mth2-23l11, complete se...    38   0.023  8
(FH385817) CHO_OF4754xc20f1.ab1 CHO_OF4 Nicotiana tabacum ge...    40   0.023  3
(AC117659) Mus musculus, clone RP23-316N7, complete sequence.      40   0.025  2
(AC100302) Mus musculus clone RP23-123B4, LOW-PASS SEQUENCE ...    40   0.026  2
(AL035476) Plasmodium falciparum MAL4P3.                           34   0.026  12
(CP000942) Ureaplasma parvum serovar 3 str. ATCC 27815, comp...    38   0.027  17
(CP000361) Arcobacter butzleri RM4018, complete genome.            34   0.028  16
(CP000013) Borrelia garinii PBi, complete genome.                  38   0.030  19
(BA000021) Wigglesworthia glossinidia endosymbiont of Glossi...    36   0.031  15
(CP000246) Clostridium perfringens ATCC 13124, complete genome.    40   0.035  20
(AC115612) Dictyostelium discoideum chromosome 2 map 6245135...    38   0.036  8
(CU062644) M.truncatula DNA sequence from clone MTH2-155M7 o...    32   0.041  11
(AC114263) Dictyostelium discoideum chromosome 2 map 215673-...    36   0.043  10
(AC115598) Dictyostelium discoideum chromosome 2 map 581427-...    34   0.048  10
(AC116977) Dictyostelium discoideum chromosome 2 map 5515173...    34   0.050  13
(AC184689) Strongylocentrotus purpuratus clone R3-1016F10, W...    40   0.055  6
(BX293980) Mycoplasma mycoides subsp. mycoides SC str. PG1, ...    32   0.060  19
(AM285302) Spiroplasma citri GII3-3X chromosome, contig Cont...    32   0.062  11
(BX248583) Blochmannia floridanus complete genome.                 36   0.065  19
(CP000939) Clostridium botulinum B1 str. Okra, complete genome.    36   0.066  19
(EB555901) AGENCOURT_51101708 D. virilis EST Drosophila viri...    34   0.070  3
(AP009686) Lotus japonicus genomic DNA, chromosome 6, clone:...    40   0.076  6
(CU752582) A BAC library has been constructed from PN40024 g...    38   0.077  3
(AE014841) Plasmodium falciparum 3D7 chromosome 11 section 6...    34   0.081  13
(CP000552) Prochlorococcus marinus str. MIT 9515, complete g...    36   0.090  17
(AC116984) Dictyostelium discoideum chromosome 2 map 2567470...    34   0.091  17
(AL445565) Mycoplasma pulmonis (strain UAB CTIP) complete ge...    34   0.091  11
(CP001158) Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisu...    34   0.095  16
(AM428196) Vitis vinifera contig VV78X040591.14, whole genom...    40   0.098  6
(AE014824) Plasmodium falciparum 3D7 chromosome 14 section 9...    34   0.11   12
(CP000123) Mycoplasma capricolum subsp. capricolum ATCC 2734...    36   0.11   20
(AY225586) Brassica rapa subsp. oleifera HRa (HRa), HRb (HRb...    40   0.11   4
(CP000976) Borrelia duttonii Ly, complete genome.                  34   0.11   18
(BX511060) Zebrafish DNA sequence from clone CH211-210L19 in...    40   0.12   5
(AC201634) Strongylocentrotus purpuratus clone R3-3107N13, W...    46   0.13   4
(BX608748) Anopheles gambiae EST, clone AGABH70TR.                 38   0.13   2
(AE014838) Plasmodium falciparum 3D7 chromosome 11 section 3...    32   0.13   11
(AC174828) Cavia porcellus clone CH234-516O20, WORKING DRAFT...    38   0.14   5
(DC213847) Plasmodium berghei strain ANKA cDNA clone:MG01565...    36   0.15   3
(AC146874) Xenopus (Silurana) tropicalis clone CH216-82D17, ...    36   0.15   7
(EK161951) 1095458034781 Global-Ocean-Sampling_GS-31-01-01-1...    40   0.15   2
(CP001205) Borrelia burgdorferi ZS7, complete genome.              38   0.15   21
(AM630422) Entamoeba dispar GSS, clone dispar55e08.q1k.            42   0.15   3
(AC198805) Pan troglodytes BAC clone CH251-420M9 from chromo...    50   0.15   1
(AC192482) Pan troglodytes BAC clone CH251-335L15 from chrom...    50   0.15   1
(AC130886) Homo sapiens X BAC RP11-361B16 (Roswell Park Canc...    50   0.15   1
(AC137796) Homo sapiens chromosome 16 clone RP11-482J20, WOR...    50   0.15   1
(DC220615) Plasmodium berghei strain ANKA cDNA clone:MZ00291...    50   0.15   1
(AC117072) Dictyostelium discoideum chromosome 2 map 3879572...    34   0.16   11
(AC005139) Plasmodium falciparum chromosome 12, *** SEQUENCI...    34   0.16   11
(AX344566) Sequence 17 from Patent WO0200932.                      34   0.17   10
(CR548612) Paramecium tetraurelia macronuclear largest chrom...    34   0.17   21
(CP000963) Clostridium botulinum A3 str. Loch Maree plasmid ...    36   0.18   12
(CR382399) Plasmodium falciparum chromosome 6, complete sequ...    34   0.19   12
(AC174282) Medicago truncatula clone mth2-18p3 map mtgsp_014...    36   0.20   9
(CP000312) Clostridium perfringens SM101, complete genome.         34   0.20   18
(AC215840) Populus trichocarpa clone POP043-C12, complete se...    32   0.21   9
(AC137819) Medicago truncatula chromosome 8 clone mth2-21i24...    36   0.21   8
(BZ086543) lki94h03.g1 B.oleracea002 Brassica oleracea genom...    36   0.21   3
(EJ089487) 1095460151819 Global-Ocean-Sampling_GS-26-01-01-1...    32   0.21   3
(AC098290) Rattus norvegicus clone CH230-1K15, *** SEQUENCIN...    38   0.22   6
(AP009247) Candidatus Vesicomyosocius okutanii HA DNA, compl...    40   0.23   16
(CP000932) Campylobacter lari RM2100, complete genome.             36   0.23   22
(EU513373) Gastrimargus marmoratus mitochondrion, complete g...    44   0.24   4
(EJ847913) 1093017864393 Global-Ocean-Sampling_GS-30-02-01-1...    32   0.25   3
(AC168197) Dasypus novemcinctus clone VMRC5-223N8, WORKING D...    40   0.28   2
(AJ010592) Guillardia theta DNA for complete sequence of nuc...    34   0.28   11
(CP000993) Borrelia recurrentis A1, complete genome.               34   0.28   18
(BX616513) Anopheles gambiae EST, clone AGADI87TR.                 36   0.28   2
(CP000743) Methanococcus aeolicus Nankai-3, complete genome.       34   0.29   14
(AC193992) Gossypium hirsutum chromosome UNKNOWN clone ZMMBB...    38   0.30   7
(BX610026) Anopheles gambiae EST, clone AGAC239TR.                 36   0.32   2
(BX618902) Anopheles gambiae EST, clone AGAEB87TR.                 36   0.32   2
(CU972504) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    34   0.32   8
(BX615375) Anopheles gambiae EST, clone AGAD577TR.                 36   0.32   2
(AP009180) Candidatus Carsonella ruddii PV DNA, complete gen...    32   0.32   11
(BX617417) Anopheles gambiae EST, clone AGADT15TR.                 36   0.32   2
(BX613666) Anopheles gambiae EST, clone AGAB054TR.                 36   0.32   2
(CR536322) Anopheles gambiae EST, clone AGAFD88TR.                 36   0.32   2
(BX611867) Anopheles gambiae EST, clone AGAAC94TR.                 36   0.32   2
(AE002106) Ureaplasma parvum serovar 3 str. ATCC 700970 sect...    38   0.33   4
(AC006279) Plasmodium falciparum chromosome 12 clone PFYAC61...    36   0.33   11
(CP000745) Methanococcus maripaludis C7, complete genome.          36   0.33   19
(AM412317) Clostridium botulinum A str. ATCC 3502 complete g...    34   0.33   18
(BX614090) Anopheles gambiae EST, clone AGACD80TRB.                36   0.34   2
(BX613887) Anopheles gambiae EST, clone AGACC61TRB.                36   0.35   2
(AP007853) Lotus japonicus genomic DNA, chromosome 1, clone:...    36   0.35   2
(BX611406) Anopheles gambiae EST, clone AGAA724TR.                 36   0.36   2
(CR534826) Anopheles gambiae EST, clone AGAEM83TR.                 36   0.36   2
(AP008136) Lotus japonicus genomic DNA, chromosome 1, clone:...    36   0.36   2
(CR536180) Anopheles gambiae EST, clone AGAF784TR.                 36   0.36   2
(CR535093) Anopheles gambiae EST, clone AGAF074TR.                 36   0.36   2
(DQ158856) Bigelowiella natans nucleomorph chromosome 1, com...    34   0.36   8
(CR536077) Anopheles gambiae EST, clone AGAFB07TR.                 36   0.36   2
(BX614416) Anopheles gambiae EST, clone AGACL80TR.                 36   0.37   2
(BX612244) Anopheles gambiae EST, clone AGAAI69TR.                 36   0.37   2
(BX607999) Anopheles gambiae EST, clone AGAB794TR.                 36   0.37   2
(BX610383) Anopheles gambiae EST, clone AGAC836TR.                 36   0.37   2
(AL929352) Plasmodium falciparum strain 3D7, chromosome 5, s...    34   0.37   14
(BX765667) Anopheles gambiae EST, clone AGCCH93TR.                 36   0.37   2
(AM285315) Spiroplasma citri GII3-3X chromosome, contig Cont...    36   0.38   5
(CR450750) Zebrafish DNA sequence from clone CH211-234P18 in...    40   0.38   3
(CP000084) Candidatus Pelagibacter ubique HTCC1062, complete...    40   0.38   19
(AE014832) Plasmodium falciparum 3D7 chromosome 10 section 4...    34   0.38   12
(CR534225) Anopheles gambiae EST, clone AGAEV96TR.                 36   0.38   2
(BX612619) Anopheles gambiae EST, clone AGAAN61TR.                 36   0.39   2
(CR533750) Anopheles gambiae EST, clone AGAES63TR.                 36   0.39   2
(BX610211) Anopheles gambiae EST, clone AGAC542TR.                 36   0.39   2
(BX618787) Anopheles gambiae EST, clone AGAEA47TR.                 36   0.39   2
(CR533678) Anopheles gambiae EST, clone AGAEU11TR.                 36   0.39   2
(BX616849) Anopheles gambiae EST, clone AGADM93TR.                 36   0.39   2
(BX609591) Anopheles gambiae EST, clone AGABT04TR.                 36   0.39   2
(BX618455) Anopheles gambiae EST, clone AGAE590TR.                 36   0.39   2
(AM485727) Vitis vinifera contig VV78X136764.4, whole genome...    38   0.39   4
(CR535900) Anopheles gambiae EST, clone AGAET44TR.                 36   0.39   2
(BM640512) 17000687283688 A.Gam.ad.cDNA1 Anopheles gambiae c...    36   0.39   2
(BX613197) Anopheles gambiae EST, clone AGAAU82TR.                 36   0.39   2
(CR534230) Anopheles gambiae EST, clone AGAEG05TR.                 36   0.39   2
(BX608988) Anopheles gambiae EST, clone AGABK61TR.                 36   0.39   2
(CR533698) Anopheles gambiae EST, clone AGAFD85TR.                 36   0.39   2
(CR533635) Anopheles gambiae EST, clone AGAES37TR.                 36   0.39   2
(BX615516) Anopheles gambiae EST, clone AGAD732TR.                 36   0.40   2
(BX617788) Anopheles gambiae EST, clone AGADX22TR.                 36   0.40   2
(CR535823) Anopheles gambiae EST, clone AGAEQ28TR.                 36   0.40   2
(CR535020) Anopheles gambiae EST, clone AGAEO22TR.                 36   0.40   2
(CR533647) Anopheles gambiae EST, clone AGAEU66TR.                 36   0.40   2
(BX614117) Anopheles gambiae EST, clone AGACE10TR.                 36   0.40   2
(BX613593) Anopheles gambiae EST, clone AGAAZ59TR.                 36   0.40   2
(CR536207) Anopheles gambiae EST, clone AGAF848TR.                 36   0.40   2
(CR535740) Anopheles gambiae EST, clone AGAF866TR.                 36   0.40   2
(BX608582) Anopheles gambiae EST, clone AGABF80TR.                 36   0.40   2
(CR534625) Anopheles gambiae EST, clone AGAEL34TR.                 36   0.40   2
(EA688617) Sequence 67496 from patent US 7365185.                  40   0.41   3
(BX611455) Anopheles gambiae EST, clone AGAA809TR.                 36   0.41   2
(BX608837) Anopheles gambiae EST, clone AGABI72TR.                 36   0.41   2
(BX616367) Anopheles gambiae EST, clone AGADH12TR.                 36   0.41   2
(BX609392) Anopheles gambiae EST, clone AGABP47TR.                 36   0.41   2
(BX612376) Anopheles gambiae EST, clone AGAAK68TR.                 36   0.41   2
(BX609855) Anopheles gambiae EST, clone AGABY47TR.                 36   0.41   2
(CR534381) Anopheles gambiae EST, clone AGAF006TR.                 36   0.41   2
(BX618094) Anopheles gambiae EST, clone AGAE146TR.                 36   0.42   2
(CR534126) Anopheles gambiae EST, clone AGAEY15TR.                 36   0.42   2
(BX611948) Anopheles gambiae EST, clone AGAAE24TR.                 36   0.42   2
(AM432701) Vitis vinifera contig VV78X196382.10, whole genom...    38   0.42   3
(CR533660) Anopheles gambiae EST, clone AGAET85TR.                 36   0.42   2
(BX613134) Anopheles gambiae EST, clone AGAAU05TR.                 36   0.42   2
(BX609994) Anopheles gambiae EST, clone AGAC170TR.                 36   0.42   2
(BX611982) Anopheles gambiae EST, clone AGAAE66TR.                 36   0.42   2
(CR535313) Anopheles gambiae EST, clone AGAEN29TR.                 36   0.42   2
(CR536250) Anopheles gambiae EST, clone AGAFD16TR.                 36   0.43   2
(CR535770) Anopheles gambiae EST, clone AGAF449TR.                 36   0.43   2
(BX617085) Anopheles gambiae EST, clone AGADP51TR.                 36   0.43   2
(BX602445) Anopheles gambiae EST, clone AGCA995TR.                 36   0.43   2
(BX607363) Anopheles gambiae EST, clone AGCC073TR.                 36   0.43   2
(CR535176) Anopheles gambiae EST, clone AGAEO94TR.                 36   0.43   2
(CR536085) Anopheles gambiae EST, clone AGAFB28TR.                 36   0.43   2
(BX609121) Anopheles gambiae EST, clone AGABM23TR.                 36   0.43   2
(CR535498) Anopheles gambiae EST, clone AGAF654TR.                 36   0.43   2
(BX608476) Anopheles gambiae EST, clone AGABE65TR.                 36   0.43   2
(CR535795) Anopheles gambiae EST, clone AGAET32TR.                 36   0.43   2
(BX613462) Anopheles gambiae EST, clone AGAAY10TR.                 36   0.44   2
(CR535315) Anopheles gambiae EST, clone AGAEN30TR.                 36   0.44   2
(BX613158) Anopheles gambiae EST, clone AGAAU34TR.                 36   0.44   2
(BX611830) Anopheles gambiae EST, clone AGAAC48TR.                 36   0.44   2
(BM630400) 17000687501377 A.Gam.ad.cDNA1 Anopheles gambiae c...    36   0.44   2
(CR534179) Anopheles gambiae EST, clone AGAEF27TR.                 36   0.44   2
(CR536341) Anopheles gambiae EST, clone AGAFA51TR.                 36   0.44   2
(CR533805) Anopheles gambiae EST, clone AGAEE96TR.                 36   0.44   2
(CR535864) Anopheles gambiae EST, clone AGAEQ75TR.                 36   0.44   2
(CR533952) Anopheles gambiae EST, clone AGAEE64TR.                 36   0.44   2
(BX613413) Anopheles gambiae EST, clone AGAAX49TR.                 36   0.44   2
(BX609729) Anopheles gambiae EST, clone AGABV94TR.                 36   0.44   2
(BX609165) Anopheles gambiae EST, clone AGABM74TR.                 36   0.44   2
(CR534558) Anopheles gambiae EST, clone AGAEH87TR.                 36   0.44   2
(BX614466) Anopheles gambiae EST, clone AGACO08TR.                 36   0.44   2
(CR533986) Anopheles gambiae EST, clone AGAEX52TR.                 36   0.44   2
(BX613540) Anopheles gambiae EST, clone AGAAZ02TR.                 36   0.44   2
(BX612329) Anopheles gambiae EST, clone AGAAK14TR.                 36   0.44   2
(BX617550) Anopheles gambiae EST, clone AGADU59TR.                 36   0.44   2
(BX608173) Anopheles gambiae EST, clone AGABA72TR.                 36   0.44   2
(CR536325) Anopheles gambiae EST, clone AGAFD92TR.                 36   0.44   2
(BX609219) Anopheles gambiae EST, clone AGABN38TR.                 36   0.44   2
(CR535472) Anopheles gambiae EST, clone AGAF325TR.                 36   0.44   2
(CR534283) Anopheles gambiae EST, clone AGAEW62TR.                 36   0.45   2
(BX609460) Anopheles gambiae EST, clone AGABQ59TR.                 36   0.45   2
(CR536168) Anopheles gambiae EST, clone AGAFC18TR.                 36   0.45   2
(BX608443) Anopheles gambiae EST, clone AGABE31TR.                 36   0.45   2
(BX608509) Anopheles gambiae EST, clone AGABF04TR.                 36   0.45   2
(CR534660) Anopheles gambiae EST, clone AGAF210TR.                 36   0.45   2
(AC116982) Dictyostelium discoideum chromosome 2 map 3622643...    34   0.45   11
(BX613423) Anopheles gambiae EST, clone AGAAX61TR.                 36   0.45   2
(BX612978) Anopheles gambiae EST, clone AGAAR83TR.                 36   0.45   2
(CR535839) Anopheles gambiae EST, clone AGAEQ48TR.                 36   0.45   2
(CR534531) Anopheles gambiae EST, clone AGAEX44TR.                 36   0.46   2
(CR535131) Anopheles gambiae EST, clone AGAF419TR.                 36   0.46   2
(BX765965) Anopheles gambiae EST, clone AGCC827TR.                 36   0.46   2
(BX606214) Anopheles gambiae EST, clone AGCBL64TR.                 36   0.46   2
(BX612627) Anopheles gambiae EST, clone AGAAN70TR.                 36   0.46   2
(BX614705) Anopheles gambiae EST, clone AGACX91TR.                 36   0.46   2
(BX612276) Anopheles gambiae EST, clone AGAAJ24TR.                 36   0.46   2
(CR535791) Anopheles gambiae EST, clone AGAET28TR.                 36   0.46   2
(CR535612) Anopheles gambiae EST, clone AGAF374TR.                 36   0.46   2
(CR533777) Anopheles gambiae EST, clone AGAEE69TR.                 36   0.46   2
(CR533756) Anopheles gambiae EST, clone AGAES72TR.                 36   0.46   2
(AL445564) Mycoplasma pulmonis (strain UAB CTIP) complete ge...    32   0.46   14
(CR535429) Anopheles gambiae EST, clone AGAEQ95TR.                 36   0.46   2
(CR533677) Anopheles gambiae EST, clone AGAEV04TR.                 36   0.46   2
(BX613489) Anopheles gambiae EST, clone AGAAY39TR.                 36   0.46   2
(BX608591) Anopheles gambiae EST, clone AGABF90TR.                 36   0.46   2
(BX612664) Anopheles gambiae EST, clone AGAAO17TR.                 36   0.47   2
(BX609227) Anopheles gambiae EST, clone AGABN46TR.                 36   0.47   2
(BX608627) Anopheles gambiae EST, clone AGABG32TR.                 36   0.47   2
(CR535350) Anopheles gambiae EST, clone AGAF578TR.                 36   0.47   2
(BX613425) Anopheles gambiae EST, clone AGAAX64TR.                 36   0.47   2
(BX606383) Anopheles gambiae EST, clone AGCBN53TR.                 36   0.47   2
(BX612657) Anopheles gambiae EST, clone AGAAO09TR.                 36   0.47   2
(CR536445) Anopheles gambiae EST, clone AGAFC94TR.                 36   0.47   2
(BX608710) Anopheles gambiae EST, clone AGABH29TR.                 36   0.47   2
(CR533860) Anopheles gambiae EST, clone AGAEF60TR.                 36   0.47   2
(AL844507) Plasmodium falciparum chromosome 8.                     34   0.47   16
(BX616903) Anopheles gambiae EST, clone AGADN54TR.                 36   0.47   2
(EK151622) 1095456054887 Global-Ocean-Sampling_GS-31-01-01-1...    44   0.48   2
(BX616019) Anopheles gambiae EST, clone AGADC96TR.                 36   0.48   2
(BX613572) Anopheles gambiae EST, clone AGAAZ37TR.                 36   0.48   2
(BX613365) Anopheles gambiae EST, clone AGAAW91TR.                 36   0.48   2
(CR535175) Anopheles gambiae EST, clone AGAF477TR.                 36   0.48   2
(BX608773) Anopheles gambiae EST, clone AGABI03TR.                 36   0.49   2
(BX613204) Anopheles gambiae EST, clone AGAAU91TR.                 36   0.49   2
(CR535444) Anopheles gambiae EST, clone AGAF295TR.                 36   0.49   2
(BX612838) Anopheles gambiae EST, clone AGAAQ26TR.                 36   0.49   2
(CR535127) Anopheles gambiae EST, clone AGAF417TR.                 36   0.49   2
(EK413814) 1095505947806 Global-Ocean-Sampling_GS-31-01-01-1...    44   0.49   2
(BX612990) Anopheles gambiae EST, clone AGAAS06TR.                 36   0.49   2
(BX613601) Anopheles gambiae EST, clone AGAAZ69TR.                 36   0.50   2
(BX606204) Anopheles gambiae EST, clone AGCBL52TR.                 36   0.50   2
(CR535950) Anopheles gambiae EST, clone AGAF547TR.                 36   0.50   2
(AC201366) Strongylocentrotus purpuratus clone R3-17C23, WOR...    44   0.51   7
(CP000409) Rickettsia canadensis str. McKiel, complete genome.     46   0.51   18
(AE015929) Staphylococcus epidermidis ATCC 12228, complete g...    44   0.53   21
(BX608206) Anopheles gambiae EST, clone AGABB19TR.                 36   0.53   2
(BX613472) Anopheles gambiae EST, clone AGAAY21TR.                 36   0.53   2
(BX609109) Anopheles gambiae EST, clone AGABM09TR.                 36   0.53   2
(AY691413) Erium globosum cytochrome b (cytb) gene, partial ...    36   0.54   4
(EU275727) Dictyostelium fasciculatum strain SH3 mitochondri...    34   0.55   6
(DX406410) GR_Sa0008B13.b1 Gossypium raimondii WGS library G...    40   0.56   2
(AE014850) Plasmodium falciparum 3D7 chromosome 12, section ...    36   0.58   13
(AL844501) Plasmodium falciparum strain 3D7, chromosome 1.         36   0.58   17
(AM485954) Vitis vinifera contig VV78X111922.9, whole genome...    36   0.58   3
(CU570794) Zebrafish DNA sequence from clone CH73-5K23 in li...    48   0.60   1
(CR387929) Zebrafish DNA sequence from clone DKEY-172H18 in ...    48   0.60   1
(CR318627) Zebrafish DNA sequence from clone DKEYP-97F4 in l...    48   0.60   1
(BX548024) Zebrafish DNA sequence from clone DKEY-218H11 in ...    48   0.60   1
(CU633457) Podospora anserina genomic DNA chromosome 5, supe...    48   0.60   1
(AP006864) Lotus japonicus genomic DNA, chromosome 3, clone:...    48   0.60   1
(AP006107) Lotus japonicus genomic DNA, chromosome 1, clone:...    48   0.60   1
(AC183587) Canis Familiaris chromosome 22, clone XX-38A2, co...    48   0.60   1
(FP236456) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    48   0.60   1
(CU695331) Brassica rapa subsp. pekinensis clone KBrH127A07,...    48   0.60   1
(CU104687) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    48   0.60   1
(CU062508) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    48   0.60   1
(BX950858) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    48   0.60   1
(AP010541) Lotus japonicus genomic DNA, chromosome 3, clone:...    48   0.60   1
(AP007809) Lotus japonicus genomic DNA, chromosome 1, clone:...    48   0.60   1
(AP007797) Lotus japonicus genomic DNA, chromosome 1, clone:...    48   0.60   1
(EK436955) 1095521070314 Global-Ocean-Sampling_GS-31-01-01-1...    48   0.60   1
(EK351231) 1095467951715 Global-Ocean-Sampling_GS-31-01-01-1...    48   0.60   1
(EK329002) 1095467016635 Global-Ocean-Sampling_GS-31-01-01-1...    48   0.60   1
(EK281755) 1095462298169 Global-Ocean-Sampling_GS-31-01-01-1...    48   0.60   1
(AY211269) Campylobacter fetus strain 23D sap gene locus, pa...    48   0.60   1
(AE017244) Mycoplasma hyopneumoniae 7448, complete genome.         36   0.61   17
(CP000049) Borrelia turicatae 91E135, complete genome.             32   0.61   18
(CP000609) Methanococcus maripaludis C5, complete genome.          34   0.63   21
(AF013294) Arabidopsis thaliana BAC TM018A10.                      38   0.63   3
(AY653733) Acanthamoeba polyphaga mimivirus, complete genome.      38   0.63   18
(AC123886) Homo sapiens BAC clone RP11-404O21 from 2, comple...    42   0.65   5
(AJ315847) Theileria annulata ckII alpha gene for casein kin...    32   0.66   4
(Z99281) Caenorhabditis elegans YAC Y57G11C.                       38   0.68   11
(AC005505) Plasmodium falciparum chromosome 12 clone PFYAC18...    36   0.68   9
(EJ481144) 1095403469832 Global-Ocean-Sampling_GS-28-01-01-1...    30   0.69   4
(AC232462) Brassica rapa subsp. pekinensis clone KBrB021L13,...    38   0.70   7
(U97593) Caenorhabditis elegans cosmid C46G7, complete seque...    36   0.70   6
(EK025074) 1092955358779 Global-Ocean-Sampling_GS-31-01-01-1...    34   0.77   3
(ER512328) 1093015458994 Global-Ocean-Sampling_GS-35-01-01-1...    30   0.77   4
(CP000726) Clostridium botulinum A str. ATCC 19397, complete...    34   0.78   18
(AC117076) Dictyostelium discoideum chromosome 2 map 3323568...    34   0.79   10
(AZ546459) ENTEC58TF Entamoeba histolytica Sheared DNA Entam...    32   0.80   4
(AE014845) Plasmodium falciparum 3D7 chromosome 12, section ...    32   0.81   12
(AC116979) Dictyostelium discoideum chromosome 2 map 6445720...    34   0.81   13
(AC210283) Zea mays chromosome 9 clone CH201-127I6; ZMMBBc01...    40   0.85   4
(CP000576) Prochlorococcus marinus str. MIT 9301, complete g...    36   0.85   19
(AC214313) Equus caballus clone CH241-385C2, WORKING DRAFT S...    40   0.86   7
(EK073462) 1092961013437 Global-Ocean-Sampling_GS-31-01-01-1...    34   0.88   3
(AB263748) Ipomoea trifida DNA, self-incompatibility (S-) lo...    34   0.89   8
(AE014822) Plasmodium falciparum 3D7 chromosome 14 section 7...    32   0.90   12
(AF165818) Guillardia theta nucleomorph chromosome 1, comple...    32   0.90   12
(AL049185) Plasmodium falciparum DNA *** SEQUENCING IN PROGR...    34   0.92   13
(AP001539) Oryza sativa Japonica Group genomic DNA, chromoso...    36   0.94   8
(L20934) Anopheles gambiae complete mitochondrial genome.          36   0.95   3
(CP000881) Hemiselmis andersenii chromosome 1, complete sequ...    36   0.95   8
(BA000016) Clostridium perfringens str. 13 DNA, complete gen...    36   0.95   16
(CP001249) Borrelia afzelii ACA-1 plasmid lp28-4, complete s...    42   0.95   5
(AL437709) T3 end of clone BC0AA011A08 of library BC0AA from...    34   0.96   3
(CP001184) Ureaplasma urealyticum serovar 10 str. ATCC 33699...    40   0.98   13
(AM458711) Vitis vinifera contig VV78X211217.5, whole genome...    36   0.98   6
(DQ927304) Tetrahymena paravorax strain RP mitochondrion, co...    32   0.99   6
(AM180355) Clostridium difficile 630 complete genome.              36   0.99   18
(AE014825) Plasmodium falciparum 3D7 chromosome 14 section 1...    32   1.0    11
(BD346580) NOVEL HUMAN GENES AND GENE EXPRESSION PRODUCTS.         28   1.0    4
(AX070293) Sequence 765 from Patent WO0102568.                     28   1.0    4
(AP010802) Solanum lycopersicum DNA, chromosome 8, clone: C0...    38   1.1    5
(AJ302051) Cryptosporidium parvum microsatellite, clone 6.         42   1.1    2
(AL929354) Plasmodium falciparum strain 3D7, chromosome 5, s...    34   1.1    10
(EU401918) Bombus hypocrita sapporoensis mitochondrion, part...    30   1.1    6
(EF640442) Sympetrum infuscatum 12S ribosomal RNA gene, part...    32   1.1    4
(DV393224) NADBH03TR Aedes aegypti infected with Dengue viru...    34   1.1    3
(D31785) Pichia canadensis mitochondrial genomic DNA, comple...    32   1.1    6
(AC151305) Xenopus (Silurana) tropicalis clone CH216-36A20, ...    44   1.1    3
(AC115606) Dictyostelium discoideum chromosome 2 map 159760-...    36   1.1    6
(AE014829) Plasmodium falciparum 3D7 chromosome 10 section 1...    34   1.1    10
(CP000721) Clostridium beijerinckii NCIMB 8052, complete gen...    34   1.2    16
(CU855960) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    34   1.2    8
(BX255949) Zebrafish DNA sequence from clone DKEY-76F5 in li...    34   1.2    10
(AE017243) Mycoplasma hyopneumoniae J, complete genome.            36   1.2    18
(BX614178) Anopheles gambiae EST, clone AGACF92TR.                 36   1.3    2
(AC117075) Dictyostelium discoideum chromosome 2 map 5201047...    38   1.3    10
(CR940347) Theileria annulata genomic DNA chromosome 1 part 1.     44   1.3    16
(AM446873) Vitis vinifera contig VV79X005170.2, whole genome...    40   1.3    4
(U37541) Drosophila melanogaster mitochondrion, complete gen...    42   1.3    4
(AC202545) Trichinella spiralis BAC clone TS195-8H12 from ch...    38   1.4    9
(CP000102) Methanosphaera stadtmanae DSM 3091, complete genome.    36   1.4    18
(AC117070) Dictyostelium discoideum chromosome 2 map 2097701...    32   1.4    10
(CP000048) Borrelia hermsii DAH, complete genome.                  32   1.4    16
(AX344559) Sequence 10 from Patent WO0200932.                      32   1.4    12
(AR833111) Sequence 13 from patent US 7026530.                     34   1.4    5
(CP000727) Clostridium botulinum A str. Hall, complete genome.     34   1.4    18
(AM285307) Spiroplasma citri GII3-3X chromosome, contig Cont...    34   1.5    7
(BD452892) Diagnosis of Diseases Associated with tumor suppr...    32   1.5    2
(AX251371) Sequence 339 from Patent WO0168912.                     32   1.5    2
(U28974) Spiroplasma phage 1-C74, complete genome.                 34   1.5    4
(AM053282) Epidinium ecaudatum EST, clone Eec05_C03.               38   1.5    3
(AC201680) Strongylocentrotus purpuratus clone R3-3014L13, W...    44   1.5    7
(BX611572) Anopheles gambiae EST, clone AGAA969TR.                 36   1.5    2
(BX619071) Anopheles gambiae EST, clone AGAED88TR.                 36   1.6    2
(D82813) Populus kitakamiensis cyp73b gene for cinnamic acid...    32   1.6    4
(AC007069) Arabidopsis thaliana chromosome 2 clone T23K3 map...    34   1.6    5
(BX618816) Anopheles gambiae EST, clone AGAEA86TR.                 36   1.6    2
(AC137552) Medicago truncatula clone mth2-9k5, complete sequ...    34   1.6    7
(EK028393) 1092955389119 Global-Ocean-Sampling_GS-31-01-01-1...    36   1.6    2
(CE633348) tigr-gss-dog-17000366728213 Dog Library Canis lup...    36   1.6    3
(BX610058) Anopheles gambiae EST, clone AGAC288TR.                 36   1.6    2
(DX512601) 762_3_14174546_16654_43607_032 Arachis duranensis...    38   1.6    2
(BX608067) Anopheles gambiae EST, clone AGAB909TR.                 36   1.6    2
(AC190266) Gallus gallus BAC clone CH261-42G8 from chromosom...    38   1.6    10
(CP000061) Aster yellows witches'-broom phytoplasma AYWB, co...    34   1.7    16
(AC112145) Mus musculus chromosome UNK clone RP23-43J19, WOR...    38   1.7    6
(AC226101) Homo sapiens BAC clone RP11-1427A2 from chromosom...    42   1.7    5
(EK303153) 1095462371867 Global-Ocean-Sampling_GS-31-01-01-1...    44   1.7    2
(AL031388) Human DNA sequence from clone RP4-737M10 on chrom...    36   1.7    5
(AI637581) ts45g07.x1 NCI_CGAP_Ut1 Homo sapiens cDNA clone I...    28   1.7    4
(AC022775) Mus musculus chromosome 15, clone RP23-71O17, com...    40   1.8    5
(AX346267) Sequence 1338 from Patent WO0200928.                    34   1.8    5
(BX511230) Zebrafish DNA sequence from clone DKEY-14H23 in l...    32   1.8    8
(AE001437) Clostridium acetobutylicum ATCC 824, complete gen...    38   1.9    21
(AC178382) Strongylocentrotus purpuratus clone R3-3107H20, W...    42   1.9    5
(AC116920) Dictyostelium discoideum chromosome 2 map 4415041...    34   2.0    8
(AZ537812) ENTFG18TR Entamoeba histolytica Sheared DNA Entam...    38   2.0    2
(DU008320) 242111 Tomato MboI BAC Library Solanum lycopersic...    36   2.0    2
(EA692798) Sequence 71677 from patent US 7365185.                  34   2.0    4
(AC205921) Pongo abelii BAC clone CH276-479M4 from chromosom...    34   2.0    9
(DU949577) 214348 Tomato MboI BAC Library Solanum lycopersic...    42   2.0    2
(AC006705) Caenorhabditis elegans clone Y108G3c, *** SEQUENC...    36   2.1    9
(AP009049) Clostridium kluyveri NBRC 12016 DNA, complete gen...    40   2.1    19
(FP102053) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    40   2.1    4
(AJ783360) Lepeophtheirus salmonis partial tryp gene and try...    36   2.1    3
(AL353638) Human DNA sequence from clone RP11-338L20 on chro...    32   2.1    8
(Z99290) Human DNA sequence from clone RP1-299C21 on chromos...    36   2.1    6
(BH925328) odi46f07.b1 B.oleracea002 Brassica oleracea genom...    32   2.2    3
(AC205435) Equus caballus clone CH241-333H4, WORKING DRAFT S...    40   2.2    6
(CU234140) Zebrafish DNA sequence from clone CH73-86C12 in l...    36   2.2    8
(EF457754) Gossypium hirsutum putative calcium-binding prote...    36   2.2    7
(AC202380) Medicago truncatula clone mth2-160m23, complete s...    36   2.3    8
(CU210902) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    36   2.3    6
(EA738669) Sequence 10115 from patent US 7368527.                  46   2.4    1
(EA733197) Sequence 1542 from patent US 7368527.                   46   2.4    1
(DJ021585) NOVEL COMPOSITIONS AND METHODS FOR THE TREATMENT ...    46   2.4    1
(BD309626) Human breast and ovarian cancer associated gene s...    46   2.4    1
(BD275161) 48 Human Secreted Proteins.                             46   2.4    1
(AL022726) Human DNA sequence from clone RP4-625H18 on chrom...    46   2.4    1
(AJ420553) Homo sapiens mRNA full length insert cDNA clone E...    46   2.4    1
(AC130504) Rattus norvegicus clone CH230-166E11, *** SEQUENC...    46   2.4    1
(AC127813) Rattus norvegicus clone CH230-255J20, *** SEQUENC...    46   2.4    1
(AC123162) Rattus norvegicus clone CH230-159A11, *** SEQUENC...    46   2.4    1
(AC109733) Rattus norvegicus clone CH230-325E4, *** SEQUENCI...    46   2.4    1
(AP007685) Lotus japonicus genomic DNA, chromosome 1, clone:...    46   2.4    1
(AC184549) Strongylocentrotus purpuratus clone R3-28M14, WOR...    46   2.4    1
(AC184364) Strongylocentrotus purpuratus clone R3-1011B23, W...    46   2.4    1
(AC181412) Strongylocentrotus purpuratus clone R3-1112I22, W...    46   2.4    1
(AC180678) Strongylocentrotus purpuratus clone R3-3087O14, W...    46   2.4    1
(AC179324) Strongylocentrotus purpuratus clone R3-1102N7, WO...    46   2.4    1
(BH134455) ENTPC35TF Entamoeba histolytica Sheared DNA Entam...    46   2.4    1
(FI017988) CHO_OF6922xp14r1.ab1 CHO_OF6 Nicotiana tabacum ge...    46   2.4    1
(EJ590344) 1092961046165 Global-Ocean-Sampling_GS-29-01-01-1...    46   2.4    1
(EJ526676) 1092955189833 Global-Ocean-Sampling_GS-29-01-01-1...    46   2.4    1
(EI289506) GM_WBc0010J04.r GM_WBc Glycine max genomic clone ...    46   2.4    1
(ED789118) GM_WBb0171K03.r GM_WBb Glycine max genomic clone ...    46   2.4    1
(AJ303651) Plasmodium chabaudi genome survey sequence, clone...    46   2.4    1
(CZ774655) OC__Ba0133F12.r OC__Ba Oryza coarctata genomic cl...    46   2.4    1
(CZ734029) OC__Ba0067A11.r OC__Ba Oryza coarctata genomic cl...    46   2.4    1
(CZ257393) LQCXD40TV Painted Turtle BAC Library Chrysemys pi...    46   2.4    1
(CT047144) Sus scrofa genomic clone PigE-111F14, genomic sur...    46   2.4    1
(DT216722) KB-EST0001806 BNS6 Homo sapiens cDNA, mRNA sequence.    46   2.4    1
(DR426344) naw29d07.y1 Chicken eye (hatched). Unnormalized (...    46   2.4    1
(DA571639) Homo sapiens cDNA clone HEMBA1006990, 5' end, mRN...    46   2.4    1
(DA570354) Homo sapiens cDNA clone HEMBA1004600, 5' end, mRN...    46   2.4    1
(AJ886161) Cyclamen persicum EST, clone 07T7.C04.                  46   2.4    1
(AJ444419) Gallus gallus EST, clone library dkfz426, clone 4...    46   2.4    1
(CF620262) caa04c08.y2 Reiterative Chick Utricle Subtraction...    46   2.4    1
(CB987216) AGENCOURT_13650939 NIH_MGC_184 Homo sapiens cDNA ...    46   2.4    1
(CB962832) AGENCOURT_13465704 NIH_MGC_187 Homo sapiens cDNA ...    46   2.4    1
(BU245315) 603778045F1 CSEQCHN34 Gallus gallus cDNA clone Ch...    46   2.4    1
(BU244780) 603778345F1 CSEQCHN34 Gallus gallus cDNA clone Ch...    46   2.4    1
(BI506977) BB170030B20G04.5 Bee Brain Normalized/Subtracted ...    46   2.4    1
(BI506108) BB170017B20F03.5 Bee Brain Normalized/Subtracted ...    46   2.4    1
(BI039837) IL3-NT0280-300101-451-G10 NT0280 Homo sapiens cDN...    46   2.4    1
(AA513037) ni28a01.s1 NCI_CGAP_Ew1 Homo sapiens cDNA clone I...    46   2.4    1
(AA483691) ne75e09.s1 NCI_CGAP_Ew1 Homo sapiens cDNA clone I...    46   2.4    1
(BE178297) RC3-HT0600-240400-023-e11 HT0600 Homo sapiens cDN...    46   2.4    1
(BE177969) RC3-HT0600-230300-021-g03 HT0600 Homo sapiens cDN...    46   2.4    1
(N83844) KK3664F Human fetal heart, Lambda ZAP Express Homo ...    46   2.4    1
(AW969749) EST381827 MAGE resequences, MAGK Homo sapiens cDN...    46   2.4    1
(AW958955) EST371025 MAGE resequences, MAGE Homo sapiens cDN...    46   2.4    1
(EX130002) BR113832 ovule and silique cDNA library KHOS Bras...    46   2.4    1
(AC233483) Solanum tuberosum strain Diploid genotype RH89-03...    34   2.4    8
(EA688667) Sequence 67546 from patent US 7365185.                  40   2.4    4
(CP000397) Borrelia afzelii PKo plasmid lp60-2, complete seq...    42   2.4    6
(CT261837) Sus scrofa genomic clone PigE-75A21, genomic surv...    36   2.4    3
(CU694869) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    38   2.4    4
(EA637787) Sequence 16666 from patent US 7365185.                  34   2.4    3
(AC199680) Callicebus moloch clone LB5-395C15, WORKING DRAFT...    34   2.5    10
(AF404306) Rhizophydium sp. 136 mitochondrion, complete genome.    30   2.5    9
(L12018) Caenorhabditis elegans cosmid F22B7, complete seque...    34   2.5    5
(DV434681) NADCW91TR Aedes aegypti infected with Dengue viru...    34   2.5    3
(AC189655) Brassica rapa subsp. pekinensis clone KBrS012M03,...    38   2.5    6
(CP000673) Clostridium kluyveri DSM 555, complete genome.          40   2.5    19
(CR352228) Zebrafish DNA sequence from clone CH211-104F13 in...    40   2.6    5
(AC123513) Dictyostelium discoideum strain AX4 chromosome 2 ...    32   2.6    6
(AV180967) Caenorhabditis elegans cDNA clone:yk614c9 : 3' en...    40   2.6    2
(AV179652) Caenorhabditis elegans cDNA clone:yk596b12 : 3' e...    40   2.6    2
(AV175912) Caenorhabditis elegans cDNA clone:yk498e8 : 3' en...    40   2.6    2
(AU116361) Caenorhabditis elegans cDNA clone:yk743g6 : 3' en...    40   2.6    2
(C37081) Caenorhabditis elegans cDNA clone yk482a5 : 3' end,...    40   2.6    2
(C35170) Caenorhabditis elegans cDNA clone yk424h6 : 3' end,...    40   2.6    2
(C33861) Caenorhabditis elegans cDNA clone yk376c11 : 3' end...    40   2.6    2
(C32842) Caenorhabditis elegans cDNA clone yk336a10 : 3' end...    40   2.6    2
(C30073) Caenorhabditis elegans cDNA clone yk236b3 : 3' end,...    40   2.6    2
(DQ445482) Nosema bombycis contig 2, partial genomic sequence.     34   2.7    5

>(C92175) Dictyostelium discoideum slug cDNA, clone SSD188.
          Length = 583

 Score =  622 bits (314), Expect(3) = 0.0
 Identities = 316/317 (99%)
 Strand = Plus / Plus


Query: 283 caatttattaataagggagaaattagaaattagtttaccagttgttaaaaatcaagttaa 342
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 197 caatttattaataagggagaaattagaaattagtttaccagttgttaaaaatcaagttaa 256


Query: 343 tccagaattggcaatgaaatcaagtagttttaatattattggctatagagataataatgg 402
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 tccagaattggcaatgaaatcaagtagttttaatattattggctatagagataataatgg 316


Query: 403 ttgttcaatttcatatttacatccatcaaaagcgaaaccaaaggattttacattaaaaga 462
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 ttgttcaatttcatatttacatccatcaaaagcgaaaccaaaggattttacattaaaaga 376


Query: 463 atatatgacatttttactttggtcacaagatcaaagtgcacatgatcattcatcagttca 522
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 atatatgacatttttactttggtcacaagatcaaagtgcacatgatcattcatcagttca 436


Query: 523 tagaaatggtatgacaattattgaagatttacataaaatatcaatttttaaacattttga 582
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 tagaaatggtatgacaattattgaagatttacataaaatatcaatttttaaacattttga 496


Query: 583 ttcaagattacaagatt 599
           | |||||||||||||||
Sbjct: 497 tncaagattacaagatt 513

 Score =  244 bits (123), Expect(3) = 0.0
 Identities = 125/126 (99%)
 Strand = Plus / Plus


Query: 87  aaaaatacaagatggtttcctttgaattaaatgaagaagaatttaaaattcttgaagatt 146
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   aaaaatacaagatggtttcctttgaattaaatgaagaagaatttaaaattcttgaagatt 60


Query: 147 taacaaatgacgaattaattgcattaagtaaatttaaagattttccnatttgcaaagata 206
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 61  taacaaatgacgaattaattgcattaagtaaatttaaagattttcccatttgcaaagata 120


Query: 207 taaaag 212
           ||||||
Sbjct: 121 taaaag 126

 Score = 26.3 bits (13), Expect(3) = 0.0
 Identities = 13/13 (100%)
 Strand = Plus / Plus


Query: 730 aagaataaattaa 742
           |||||||||||||
Sbjct: 522 aagaataaattaa 534

 Score =  143 bits (72), Expect = 1e-29
 Identities = 74/75 (98%)
 Strand = Plus / Plus


Query: 593 caagattacaagattttcttaaaaagaataaattaaatgatatgcaagatgttttcattg 652
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 499 caagattacaagattttcttaaaaagaataaattaaatgatatgcaagatgttntcattg 558


Query: 653 gtagaattcaaaaaa 667
           |||||||||||||||
Sbjct: 559 gtagaattcaaaaaa 573

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 102105510
Number of Hits to DB: 1,345,270,211
Number of extensions: 94368119
Number of successful extensions: 8647852
Number of sequences better than 10.0: 1348
Length of query: 915
Length of database: 101,790,757,118
Length adjustment: 24
Effective length of query: 891
Effective length of database: 99,340,224,878
Effective search space: 88512140366298
Effective search space used: 88512140366298
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7.31
Homology vs Protein 
Query= Contig-U04814-1 (Contig-U04814-1Q) /CSM_Contig/Contig-U04814-1Q.Seq.d
         (915 letters)

Database: nrp_A
           3,268,448 sequences; 1,061,185,681 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q9Z275) RecName: Full=Retinaldehyde-binding protein 1; AltName:...    47   0.001
AK314045_1(AK314045|pid:none) Homo sapiens cDNA, FLJ94708.             46   0.002
CR936621_1(CR936621|pid:none) Homo sapiens mRNA; cDNA DKFZp686E0...    46   0.002
(Q5RFR0) RecName: Full=Alpha-tocopherol transfer protein-like;  ...    46   0.002
AL132772_7(AL132772|pid:none) Human DNA sequence from clone RP5-...    46   0.002
BC149824_1(BC149824|pid:none) Bos taurus tocopherol (alpha) tran...    45   0.003
AK033600_1(AK033600|pid:none) Mus musculus adult male cecum cDNA...    45   0.003
(Q9D3D0) RecName: Full=Alpha-tocopherol transfer protein-like;  ...    45   0.003
AB174570_1(AB174570|pid:none) Macaca fascicularis brain cDNA clo...    44   0.008
(P12271) RecName: Full=Retinaldehyde-binding protein 1; AltName:...    43   0.013
AJ851795_1(AJ851795|pid:none) Gallus gallus mRNA for hypothetica...    42   0.022
CS300706_1(CS300706|pid:none) Sequence 214 from Patent EP1661986.      42   0.038
AK136083_1(AK136083|pid:none) Mus musculus in vitro fertilized e...    42   0.038
(Q5RCA6) RecName: Full=Retinaldehyde-binding protein 1-like prot...    42   0.038
(Q9D4C9) RecName: Full=Retinaldehyde-binding protein 1-like prot...    42   0.038
AK084350_1(AK084350|pid:none) Mus musculus 12 days embryo eyebal...    42   0.038
(Q8IUQ0) RecName: Full=Retinaldehyde-binding protein 1-like prot...    42   0.038
AL132772_9(AL132772|pid:none) Human DNA sequence from clone RP5-...    41   0.050
BC055264_1(BC055264|pid:none) Danio rerio tocopherol (alpha) tra...    40   0.085
AB170306_1(AB170306|pid:none) Macaca fascicularis brain cDNA clo...    40   0.085
A31955(A31955;A30052) cellular retinaldehyde-binding protein - b...    39   0.25
(Q09270) RecName: Full=CRAL-TRIO domain-containing protein C34C1...    39   0.25
AF024652_1(AF024652|pid:none) Glycine max polyphosphoinositide b...    37   0.94
AK341192_1(AK341192|pid:none) Acyrthosiphon pisum ACYPI004406 mR...    36   1.6
T19698(T19698)hypothetical protein C34C12.6 - Caenorhabditis ele...    36   1.6
AK295158_1(AK295158|pid:none) Homo sapiens cDNA FLJ50767 complet...    36   2.1
(Q5SYC1) RecName: Full=Retinaldehyde-binding protein 1-like prot...    36   2.1
AM270365_19(AM270365|pid:none) Aspergillus niger contig An16c013...    35   2.7
BC065863_1(BC065863|pid:none) Danio rerio retinaldehyde binding ...    35   2.7
(Q5SPP0) RecName: Full=Retinaldehyde-binding protein 1-like prot...    34   6.1

>(Q9Z275) RecName: Full=Retinaldehyde-binding protein 1; AltName:
           Full=Cellular retinaldehyde-binding protein;
           &AF084642_1(AF084642|pid:none)
           &AK014227_1(AK014227|pid:none)
           &AK140622_1(AK140622|pid:none)
           &BC016268_1(BC016268|pid:none)
          Length = 317

 Score = 47.0 bits (110), Expect = 0.001
 Identities = 23/73 (31%), Positives = 42/73 (57%), Gaps = 2/73 (2%)
 Frame = +1

Query: 616 KNKLNDMQDVFIGRIQKIYILNPPWVLKPLLSLAKTFMKNKLISRIEICKN--DQIFTTI 789
           K  ++ +QD F  R + I+ ++ PW      ++ K F+KNKL+ R+ +  +  D  F  I
Sbjct: 221 KKMVDMLQDSFPARFKAIHFIHQPWYFTTTYNVVKPFLKNKLLQRVFVHGDDLDGFFQEI 280

Query: 790 DQSKVLFEYGGTL 828
           D++ +  ++GGTL
Sbjct: 281 DENILPADFGGTL 293

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3268448
Number of Hits to DB: 1,015,486,307
Number of extensions: 17071657
Number of successful extensions: 37475
Number of sequences better than 10.0: 30
Number of HSP's gapped: 37468
Number of HSP's successfully gapped: 30
Length of query: 305
Length of database: 1,061,185,681
Length adjustment: 128
Effective length of query: 177
Effective length of database: 642,824,337
Effective search space: 113779907649
Effective search space used: 113779907649
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
PSORT 

 psg: 0.41  gvh: 0.30  alm: 0.47  top: 0.53  tms: 0.00  mit: 0.18  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 60.0 %: cytoplasmic
	 24.0 %: nuclear
	 12.0 %: mitochondrial
	  4.0 %: cytoskeletal

>> prediction for Contig-U04814-1 is cyt
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 3
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0