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Dicty_cDB
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U04801-1
Contig ID Contig-U04801-1
Contig update 2001. 8.29
Contig sequence 
>Contig-U04801-1 (Contig-U04801-1Q) /CSM_Contig/Contig-U04801-1Q.Seq.d
ACAAAGTCCAACTACTAGAACAGATCAAGGTTTTTTAAATAAAATCCATA
ATTATAATCAACAAGTTGAAACAAATGCATCATCAGCTTTAAATTTCATT
GATGGTAAGTCATCATCGTCAAATCCAACACCAACTTCAACACCAAATAT
TACATCATCAAATGAAAATTCAAATTTAAATAATAGATCTACAACTTCAT
CATCAACATCAAATGAAAGAGGTTCCTTTGGTGATGTTGAAGAAAAAGTT
GATGGATTTTTCAAAGGAAATCAATCAAAATCACATAACGATCAAACAAA
TCCTGAACCACACAGAAAAGAAGGTTTATTATCTAAAATTGGAAAATTCT
AAATTAATTTCATACCTTTTATAAATATATTTTATATACCCATTTTATAT
ACCCATTTTATATACCCATTTTATATACTTATTTTATATACCCATTTTAT
ATACCTATTTTTTTCAATAAAAAAAATAATTAAATAAATAAAAAAAAATA
AAGATTTAATAAATAA
Gap no gap
Contig length 516
Chromosome number (1..6, M) 2
Chromosome length 8467578
Start point 4556084
End point 4556505
Strand (PLUS/MINUS) PLUS
Number of clones 1
Number of EST 1
Link to clone list U04801
List of clone(s) 

est1=SSD126F,1,517
Translated Amino Acid sequence 
QSPTTRTDQGFLNKIHNYNQQVETNASSALNFIDGKSSSSNPTPTSTPNITSSNENSNLN
NRSTTSSSTSNERGSFGDVEEKVDGFFKGNQSKSHNDQTNPEPHRKEGLLSKIGKF*inf
ipfinifyipilythfiypfyililythfiylffsikkiik*ikknkdlin
Translated Amino Acid sequence (All Frames) 
Frame A:
tksny*nrsrffk*np*l*sts*nkciisfkfh*w*viivksntnfntkyyiik*kfkfk
**iynfiinik*krflw*c*rks*wifqrksikit*rsnks*ttqkrrfii*nwkiln*f
htfykyilythfiypfyipilytyfiypfyipiffnkknn*inkkk*rfnk*


Frame B:
QSPTTRTDQGFLNKIHNYNQQVETNASSALNFIDGKSSSSNPTPTSTPNITSSNENSNLN
NRSTTSSSTSNERGSFGDVEEKVDGFFKGNQSKSHNDQTNPEPHRKEGLLSKIGKF*inf
ipfinifyipilythfiypfyililythfiylffsikkiik*ikknkdlin


Frame C:
kvqlleqikvf*iksiiiinklkqmhhql*islmvshhrqiqhqlqhqilhhqmkiqi*i
idlqlhhqhqmkevplvmlkkklmdfskeinqnhitikqilnhtekkvyylklensklis
yll*iyfiypfyipilythfiylfyipilytyffq*kk*lnk*kkiki**i
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U04801-1 (Contig-U04801-1Q)
/CSM_Contig/Contig-U04801-1Q.Seq.d
         (516 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U04801-1 (Contig-U04801-1Q) /CSM_Contig/Conti...   698  0.0
Contig-U12725-1 (Contig-U12725-1Q) /CSM_Contig/Conti...    44  1e-04
Contig-U06589-1 (Contig-U06589-1Q) /CSM_Contig/Conti...    44  1e-04
Contig-U12457-1 (Contig-U12457-1Q) /CSM_Contig/Conti...    40  0.002
Contig-U11409-1 (Contig-U11409-1Q) /CSM_Contig/Conti...    40  0.002
Contig-U08900-1 (Contig-U08900-1Q) /CSM_Contig/Conti...    40  0.002
Contig-U14755-1 (Contig-U14755-1Q) /CSM_Contig/Conti...    38  0.009
Contig-U09683-1 (Contig-U09683-1Q) /CSM_Contig/Conti...    38  0.009
Contig-U03257-1 (Contig-U03257-1Q) /CSM_Contig/Conti...    38  0.009
Contig-U01835-1 (Contig-U01835-1Q) /CSM_Contig/Conti...    38  0.009

>Contig-U04801-1 (Contig-U04801-1Q) /CSM_Contig/Contig-U04801-1Q.Seq.d
          Length = 516

 Score =  698 bits (352), Expect = 0.0
 Identities = 352/352 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   acaaagtccaactactagaacagatcaaggttttttaaataaaatccataattataatca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   acaaagtccaactactagaacagatcaaggttttttaaataaaatccataattataatca 60

                                                                       
Query: 61  acaagttgaaacaaatgcatcatcagctttaaatttcattgatggtaagtcatcatcgtc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  acaagttgaaacaaatgcatcatcagctttaaatttcattgatggtaagtcatcatcgtc 120

                                                                       
Query: 121 aaatccaacaccaacttcaacaccaaatattacatcatcaaatgaaaattcaaatttaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 aaatccaacaccaacttcaacaccaaatattacatcatcaaatgaaaattcaaatttaaa 180

                                                                       
Query: 181 taatagatctacaacttcatcatcaacatcaaatgaaagaggttcctttggtgatgttga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 taatagatctacaacttcatcatcaacatcaaatgaaagaggttcctttggtgatgttga 240

                                                                       
Query: 241 agaaaaagttgatggatttttcaaaggaaatcaatcaaaatcacataacgatcaaacaaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 agaaaaagttgatggatttttcaaaggaaatcaatcaaaatcacataacgatcaaacaaa 300

                                                               
Query: 301 tcctgaaccacacagaaaagaaggtttattatctaaaattggaaaattctaa 352
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tcctgaaccacacagaaaagaaggtttattatctaaaattggaaaattctaa 352


 Score = 36.2 bits (18), Expect = 0.036
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                             
Query: 499 taaagatttaataaataa 516
           ||||||||||||||||||
Sbjct: 499 taaagatttaataaataa 516


 Score = 34.2 bits (17), Expect = 0.14
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                            
Query: 449 atatacctatttttttc 465
           |||||||||||||||||
Sbjct: 449 atatacctatttttttc 465


>Contig-U12725-1 (Contig-U12725-1Q) /CSM_Contig/Contig-U12725-1Q.Seq.d
          Length = 383

 Score = 44.1 bits (22), Expect = 1e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 125 ccaacaccaacttcaacaccaa 146
           ||||||||||||||||||||||
Sbjct: 131 ccaacaccaacttcaacaccaa 152


 Score = 42.1 bits (21), Expect = 6e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 126 caacaccaacttcaacaccaa 146
           |||||||||||||||||||||
Sbjct: 156 caacaccaacttcaacaccaa 176


 Score = 42.1 bits (21), Expect = 6e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 126 caacaccaacttcaacaccaa 146
           |||||||||||||||||||||
Sbjct: 168 caacaccaacttcaacaccaa 188


 Score = 42.1 bits (21), Expect = 6e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 126 caacaccaacttcaacaccaa 146
           |||||||||||||||||||||
Sbjct: 180 caacaccaacttcaacaccaa 200


 Score = 42.1 bits (21), Expect = 6e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 126 caacaccaacttcaacaccaa 146
           |||||||||||||||||||||
Sbjct: 144 caacaccaacttcaacaccaa 164


 Score = 30.2 bits (15), Expect = 2.2
 Identities = 21/23 (91%)
 Strand = Plus / Plus

                                  
Query: 126 caacaccaacttcaacaccaaat 148
           ||||||||||| || ||||||||
Sbjct: 192 caacaccaactacaccaccaaat 214


>Contig-U06589-1 (Contig-U06589-1Q) /CSM_Contig/Contig-U06589-1Q.Seq.d
          Length = 281

 Score = 44.1 bits (22), Expect = 1e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 125 ccaacaccaacttcaacaccaa 146
           ||||||||||||||||||||||
Sbjct: 13  ccaacaccaacttcaacaccaa 34


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 10,763
Number of Sequences: 6905
Number of extensions: 10763
Number of successful extensions: 1582
Number of sequences better than 10.0: 569
length of query: 516
length of database: 5,674,871
effective HSP length: 16
effective length of query: 500
effective length of database: 5,564,391
effective search space: 2782195500
effective search space used: 2782195500
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)
dna update 2009. 7. 2
Homology vs DNA 
Query= Contig-U04801-1 (Contig-U04801-1Q) /CSM_Contig/Contig-U04801-1Q.Seq.d
         (516 letters)

Database: ddbj_A
           102,105,510 sequences; 101,790,757,118 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AC116957) Dictyostelium discoideum chromosome 2 map 1685067...   698   0.0    1
(AU071991) Dictyostelium discoideum slug cDNA, clone SSD126.      476   e-130  1
(AY160100) Dictyostelium discoideum nucleotide exchange fact...    38   0.016  2
(AF474377) Dictyostelium discoideum Ras GTP exchange factor ...    38   0.017  2
(BJ328938) Dictyostelium discoideum cDNA clone:dda30l06, 5' ...    38   0.018  2
(BJ327265) Dictyostelium discoideum cDNA clone:dda19f22, 5' ...    38   0.018  2
(BJ362105) Dictyostelium discoideum cDNA clone:ddc20a07, 5' ...    38   0.018  2
(AC158628) Mus musculus 6 BAC RP23-147K11 (Roswell Park Canc...    48   0.33   1
(AC112682) Mus musculus chromosome 6, clone RP23-332K10, com...    48   0.33   1
(EC016863) 3857072 KZ41 Caenorhabditis elegans cDNA clone 17...    48   0.33   1
(AE001424) Plasmodium falciparum 3D7 chromosome 2 section 61...    38   0.44   3
(AC117070) Dictyostelium discoideum chromosome 2 map 2097701...    32   0.56   8
(AC137620) Oryza sativa Japonica Group chromosome 5 clone OS...    46   0.57   3
(AC135565) Medicago truncatula clone mth2-19b12, complete se...    34   0.68   5
(AC149061) Mus musculus chromosome 7 clone RP23-211G17, *** ...    34   0.71   2
(AC123593) Genomic sequence for Medicago truncatula, clone M...    34   0.73   2
(GD552088) 454PCS0179779 Scarlet Runner Bean globular-stage ...    34   0.91   2
(AP008211) Oryza sativa (japonica cultivar-group) genomic DN...    46   1.3    1
(AC130729) Oryza sativa Japonica Group chromosome 5 clone P0...    46   1.3    1
(AL512791) Human chromosome 14 DNA sequence BAC R-471B22 of ...    46   1.3    1
(AL161662) Human chromosome 14 DNA sequence BAC R-439L12 of ...    46   1.3    1
(AC231995) Solanum tuberosum chromosome 1 clone RH002P11, **...    46   1.3    1
(EI389819) POTC734TR Solanum tuberosum RHPOTKEY BAC ends Sol...    46   1.3    1
(CN807872) HDAH09A01.F Leech Haementeria depressa library HD...    38   1.3    2
(AC116920) Dictyostelium discoideum chromosome 2 map 4415041...    36   1.4    5
(AC184061) Populus trichocarpa clone Pop1-106E19, complete s...    40   1.4    4
(AC084581) Caenorhabditis briggsae cosmid G40L08, complete s...    38   1.7    2
(ER615520) 1093017097658 Global-Ocean-Sampling_GS-36-01-01-2...    42   2.3    2
(EJ228300) 1092402534925 Global-Ocean-Sampling_GS-27-01-01-1...    42   2.5    2
(EK198830) 1095460048991 Global-Ocean-Sampling_GS-31-01-01-1...    36   2.5    2
(EY888929) TS27-C2-300-025-E08-CT.F Sunki mandarin bark, gre...    40   2.5    2
(ES397649) MUT01-G19.x1d-t SHGC-MUT Mytilus californianus cD...    42   2.7    2
(AC179949) Strongylocentrotus purpuratus clone R3-21A19, WOR...    38   2.7    5
(EX263869) 1444379_5_J17_071 PY06 Carica papaya cDNA, mRNA s...    36   2.9    2
(AU061871) Dictyostelium discoideum slug cDNA, clone SLG413.       34   3.0    3
(EB306039) CNSN01-F-066307-501 Normalized CNS library (juven...    34   3.7    2
(EA625167) Sequence 4046 from patent US 7365185.                   34   3.9    2
(EA625166) Sequence 4045 from patent US 7365185.                   34   3.9    2
(AC023335) Homo sapiens chromosome 5 clone RP11-756N1 map 5,...    40   4.3    3
(DD010062) Immunogenic compositions comprising Liver Stage M...    38   4.4    2
(AX536319) Sequence 3 from Patent WO0238176.                       38   4.4    2
(AX428968) Sequence 3 from Patent EP1201250.                       38   4.4    2
(AJ007011) Plasmodium falciparum LSA-3, strain T9/96, partia...    38   4.4    2
(AC150776) Medicago truncatula chromosome 7 clone mte1-45n16...    34   4.6    5
(CS255975) Sequence 3 from Patent EP1621547.                       38   4.8    2
(A58934) Sequence 3 from Patent WO9641877.                         38   4.8    2
(AR916607) Sequence 4 from patent US 7056518.                      38   4.8    2
(AR131273) Sequence 3 from patent US 6191270.                      38   4.8    2
(ET888512) CHO_OF033xa02r2.ab1 CHO_OF Nicotiana tabacum geno...    34   5.0    2
(BX950225) Zebrafish DNA sequence from clone CH211-173B8 in ...    44   5.2    1
(BV387712) S244P6400FD2.T0 AlaskaGrayWolf Canis lupus STS ge...    44   5.2    1
(AC201628) Rhesus Macaque  BAC CH250-206J22 () complete sequ...    44   5.2    1
(CU137662) Medicago truncatula chromosome 5 clone mth2-155l8...    44   5.2    1
(AP006259) Homo sapiens genomic DNA, chromosome 11, clone:RP...    44   5.2    1
(AC010729) Homo sapiens BAC clone RP11-350H23 from 2, comple...    44   5.2    1
(AC138061) Homo sapiens chromosome 11 clone CTD-2547E20 map ...    44   5.2    1
(AC137718) Homo sapiens chromosome 11 clone RP11-5L12 map 11...    44   5.2    1
(AC118111) Rattus norvegicus clone CH230-399K7, WORKING DRAF...    44   5.2    1
(AC096473) Rattus norvegicus clone CH230-53O9, WORKING DRAFT...    44   5.2    1
(AC095562) Rattus norvegicus clone CH230-7C11, WORKING DRAFT...    44   5.2    1
(FP104559) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   5.2    1
(FP015769) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   5.2    1
(AC084232) Homo sapiens clone RP11-626J3, WORKING DRAFT SEQU...    44   5.2    1
(AC026077) Homo sapiens chromosome 11 clone RP11-299K14, WOR...    44   5.2    1
(BX664701) Human DNA sequence *** SEQUENCING IN PROGRESS ***...    44   5.2    1
(ER366620) 1093022045215 Global-Ocean-Sampling_GS-34-01-01-1...    44   5.2    1
(DX903085) KBrH036H23R KBrH, Brassica rapa HindIII BAC libra...    44   5.2    1
(DU212765) 1098538404864 CHORI-243 Ovis aries genomic clone ...    44   5.2    1
(DU020257) 278163 Tomato MboI BAC Library Solanum lycopersic...    44   5.2    1
(AG644338) Macaca fuscata fuscata DNA, clone: MSB2-054E09_R,...    44   5.2    1
(AG286384) Mus musculus molossinus DNA, clone:MSMg01-059M14....    44   5.2    1
(AU264440) Dictyostelium discoideum vegetative cDNA clone:VS...    44   5.2    1
(AU264439) Dictyostelium discoideum vegetative cDNA clone:VS...    44   5.2    1
(CK722798) jab18c03.y2 Anolis sagrei limb bud 2 Anolis sagre...    44   5.2    1
(CF113876) Shultzomica07127 Rat lung airway and parenchyma c...    44   5.2    1
(BJ334816) Dictyostelium discoideum cDNA clone:dda47n19, 5' ...    44   5.2    1
(AW533877) UI-R-C4-alw-b-07-0-UI.s1 UI-R-C4 Rattus norvegicu...    44   5.2    1
(CP000393) Trichodesmium erythraeum IMS101, complete genome.       44   5.2    1
(AC148591) Gasterosteus aculeatus clone uogacrs-11b12-1, WOR...    38   5.3    2
(AC116984) Dictyostelium discoideum chromosome 2 map 2567470...    36   5.5    10
(AF022983) Caenorhabditis elegans cosmid R13D11, complete se...    38   5.5    2
(AC168642) Strongylocentrotus purpuratus clone R3-3018C18, W...    42   6.0    2
(AC159613) Medicago truncatula clone mth2-157l7, complete se...    34   6.2    4
(AC193611) Pan troglodytes chromosome 19 clone CH251-496F20,...    42   6.9    2
(EY504188) CBBP7356.fwd CBBP Hirudo medicinalis hermaphrodit...    36   7.5    2
(EY504187) CBBP7356.rev CBBP Hirudo medicinalis hermaphrodit...    36   7.6    2
(BX538352) Cryptosporidium parvum chromosome 6, complete seq...    36   8.2    3
(EJ710510) 1092956072806 Global-Ocean-Sampling_GS-30-02-01-1...    40   9.2    2
(AC101860) Mus musculus clone RP23-311K9, *** SEQUENCING IN ...    32   9.2    2
(AC233189) Colobus guereza clone CH272-33O23, WORKING DRAFT ...    30   9.2    2
(AL929156) Mouse DNA sequence from clone RP23-475H18 on chro...    32   9.3    2
(AC113333) Oryza sativa Japonica Group chromosome 5 clone OJ...    32   9.5    2
(AC101878) Mus musculus clone RP23-372D22, WORKING DRAFT SEQ...    32   9.6    2
(AC180291) Strongylocentrotus purpuratus clone R3-3123C22, W...    34   9.8    5
(AC182671) Populus trichocarpa clone Pop1-24F1, complete seq...    40   9.9    5

>(AC116957) Dictyostelium discoideum chromosome 2 map 1685067-2090751
             strain AX4, complete sequence.
          Length = 405682

 Score =  698 bits (352), Expect = 0.0
 Identities = 352/352 (100%)
 Strand = Plus / Minus


Query: 1     acaaagtccaactactagaacagatcaaggttttttaaataaaatccataattataatca 60
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 83692 acaaagtccaactactagaacagatcaaggttttttaaataaaatccataattataatca 83633


Query: 61    acaagttgaaacaaatgcatcatcagctttaaatttcattgatggtaagtcatcatcgtc 120
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 83632 acaagttgaaacaaatgcatcatcagctttaaatttcattgatggtaagtcatcatcgtc 83573


Query: 121   aaatccaacaccaacttcaacaccaaatattacatcatcaaatgaaaattcaaatttaaa 180
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 83572 aaatccaacaccaacttcaacaccaaatattacatcatcaaatgaaaattcaaatttaaa 83513


Query: 181   taatagatctacaacttcatcatcaacatcaaatgaaagaggttcctttggtgatgttga 240
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 83512 taatagatctacaacttcatcatcaacatcaaatgaaagaggttcctttggtgatgttga 83453


Query: 241   agaaaaagttgatggatttttcaaaggaaatcaatcaaaatcacataacgatcaaacaaa 300
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 83452 agaaaaagttgatggatttttcaaaggaaatcaatcaaaatcacataacgatcaaacaaa 83393


Query: 301   tcctgaaccacacagaaaagaaggtttattatctaaaattggaaaattctaa 352
             ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 83392 tcctgaaccacacagaaaagaaggtttattatctaaaattggaaaattctaa 83341

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 102105510
Number of Hits to DB: 602,205,266
Number of extensions: 40526638
Number of successful extensions: 3728873
Number of sequences better than 10.0: 98
Length of query: 516
Length of database: 101,790,757,118
Length adjustment: 23
Effective length of query: 493
Effective length of database: 99,442,330,388
Effective search space: 49025068881284
Effective search space used: 49025068881284
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7.31
Homology vs Protein 
Query= Contig-U04801-1 (Contig-U04801-1Q) /CSM_Contig/Contig-U04801-1Q.Seq.d
         (516 letters)

Database: nrp_A
           3,268,448 sequences; 1,061,185,681 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116957_36(AC116957|pid:none) Dictyostelium discoideum chromoso...   154   1e-36
X14105_1(X14105|pid:none) Yeast MAS2 gene for mitochondrial proc...    32   9.3

>AC116957_36(AC116957|pid:none) Dictyostelium discoideum chromosome
           2 map 1685067-2090751 strain AX4, complete sequence.
          Length = 396

 Score =  154 bits (389), Expect = 1e-36
 Identities = 80/115 (69%), Positives = 80/115 (69%)
 Frame = +2

Query: 2   QSPTTRTDQGFLNKIHNYNQQVETNASSALNFIDGKXXXXXXXXXXXXXXXXXXXXXXXX 181
           QSPTTRTDQGFLNKIHNYNQQVETNASSALNFIDGK
Sbjct: 281 QSPTTRTDQGFLNKIHNYNQQVETNASSALNFIDGKSSSSNPTPTSTPNITSSNENSNLN 340

Query: 182 XXXXXXXXXXXERGSFGDVEEKVDGFFKGNQSKSHNDQTNPEPHRKEGLLSKIGK 346
                      ERGSFGDVEEKVDGFFKGNQSKSHNDQTNPEPHRKEGLLSKIGK
Sbjct: 341 NRSTTSSSTSNERGSFGDVEEKVDGFFKGNQSKSHNDQTNPEPHRKEGLLSKIGK 395

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3268448
Number of Hits to DB: 570,196,724
Number of extensions: 8137476
Number of successful extensions: 17236
Number of sequences better than 10.0: 2
Number of HSP's gapped: 17211
Number of HSP's successfully gapped: 2
Length of query: 172
Length of database: 1,061,185,681
Length adjustment: 119
Effective length of query: 53
Effective length of database: 672,240,369
Effective search space: 35628739557
Effective search space used: 35628739557
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 30 (16.2 bits)
PSORT 

 psg: 0.65  gvh: 0.35  alm: 0.63  top: 0.53  tms: 0.00  mit: 0.24  mip: 0.02
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.30  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 32.0 %: nuclear
	 20.0 %: mitochondrial
	  4.0 %: cytoskeletal

>> prediction for Contig-U04801-1 is cyt
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 1
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0