Contig-U04800-1
Contig ID Contig-U04800-1
Contig update 2001. 8.29
Contig sequence
>Contig-U04800-1 (Contig-U04800-1Q) /CSM_Contig/Contig-U04800-1Q.Seq.d
CAACAACAAATGGAAGATATAGAATATCAAGATATGGTAATAACAGAATA
TTCAGATAATAATAAAAGTAATGATAGTATAGTAGTTGAAAAAAAATTAT
GATAGTATGATTGTAGAAGATGATGTTATGGCAAATGTTAACAAAGAATC
ACAACTAATTGAACGAGAAGAATATAACATACAACAATTTGAAACACCTC
CTCAAGAACAACAAGAACAACAAAAAAAACAACAACAACAAGAACAACAA
CAAGAACAACAACAAGAACAACAACAAAACCTACAAAAAATAGCAACAAC
AGGTACTGATATAACAGGTACAGATACAAACATCACTACTACTACTACCA
CTACTGATACCCCAACCATTAAAATTAAATATAATGATGAATTATTCTTT
AGAATGTGGAAAGATAAAGACATAAGTCAAATTATTTGGAAATGTGTGAA
AATAAGGAGTGATCTATACAATACTTATAATAATAATAATAATAATAATA
ATATTACAAATAATAGAGTATGGAAATATTATCAAACTCATTCATTAGAA
TGGTTAATTAAAAATAATCATTNGCAATTATTTAAATATCGTTTAAAACG
TGGTGATTNTATCTCATTCAATGNACAATCATTTAAACTTATTCATAAAT
TATTTGATCAAATTNAATTATATGAAGAAAAAGATGAAAAAGAAA

Gap no gap
Contig length 695
Chromosome number (1..6, M) 6
Chromosome length 3595308
Start point 3256169
End point 3256866
Strand (PLUS/MINUS) PLUS
Number of clones 1
Number of EST 1
Link to clone list U04800
List of clone(s)

est1=SSD121E,1,696
Translated Amino Acid sequence
nnkwki*nikiw**qniqiiikvmiv**LKKNYDSMIVEDDVMANVNKESQLIEREEYNI
QQFETPPQEQQEQQKKQQQQEQQQEQQQEQQQNLQKIATTGTDITGTDTNITTTTTTTDT
PTIKIKYNDELFFRMWKDKDISQIIWKCVKIRSDLYNTYNNNNNNNNITNNRVWKYYQTH
SLEWLIKNNHXQLFKYRLKRGDXISFNXQSFKLIHKLFDQIXLYEEKDEKE


Translated Amino Acid sequence (All Frames)
Frame A:
qqqmedieyqdmviteysdnnksndsivvekkl**ydcrr*cygkc*qrittn*trri*h
tti*ntssrttrttkkttttrtttrtttrtttkptknsnnry*ynryrykhhyyyyhy*y
pnh*n*i***iil*nver*rhksnylemcenke*siqyl********yyk**smeilsns
firmvn*k*sxaii*isfktw*xyliqxtii*tys*ii*snxii*rkr*kr


Frame B:
nnkwki*nikiw**qniqiiikvmiv**LKKNYDSMIVEDDVMANVNKESQLIEREEYNI
QQFETPPQEQQEQQKKQQQQEQQQEQQQEQQQNLQKIATTGTDITGTDTNITTTTTTTDT
PTIKIKYNDELFFRMWKDKDISQIIWKCVKIRSDLYNTYNNNNNNNNITNNRVWKYYQTH
SLEWLIKNNHXQLFKYRLKRGDXISFNXQSFKLIHKLFDQIXLYEEKDEKE


Frame C:
ttngryrisrygnnrifr***k***yss*kkimiv*l*kmmlwqmltknhn*lneknity
nnlkhllknnknnkknnnnknnnknnnknnnktykk*qqqvli*qvqiqtsllllpllip
qplklnimmnyslecgkikt*vklfgnv*k*gviytiliiiiiiiiilqiieygniikli
h*ng*lkiiixnylniv*nvvixshsmxnhlnlfinylikxnymkkkmkkk


own update 2004. 6.10
Homology vs CSM-cDNA
Query= Contig-U04800-1 (Contig-U04800-1Q)
/CSM_Contig/Contig-U04800-1Q.Seq.d
(695 letters)

Database: CSM
6905 sequences; 5,674,871 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U04800-1 (Contig-U04800-1Q) /CSM_Contig/Conti... 357 1e-98
Contig-U14519-1 (Contig-U14519-1Q) /CSM_Contig/Conti... 42 8e-04
Contig-U13543-1 (Contig-U13543-1Q) /CSM_Contig/Conti... 42 8e-04
Contig-U11258-1 (Contig-U11258-1Q) /CSM_Contig/Conti... 42 8e-04
Contig-U10899-1 (Contig-U10899-1Q) /CSM_Contig/Conti... 42 8e-04
Contig-U06294-1 (Contig-U06294-1Q) /CSM_Contig/Conti... 42 8e-04
Contig-U11946-1 (Contig-U11946-1Q) /CSM_Contig/Conti... 40 0.003
Contig-U11652-1 (Contig-U11652-1Q) /CSM_Contig/Conti... 40 0.003
Contig-U10898-1 (Contig-U10898-1Q) /CSM_Contig/Conti... 40 0.003
Contig-U09357-1 (Contig-U09357-1Q) /CSM_Contig/Conti... 40 0.003

>Contig-U04800-1 (Contig-U04800-1Q) /CSM_Contig/Contig-U04800-1Q.Seq.d
Length = 695

Score = 357 bits (180), Expect = 1e-98
Identities = 192/192 (100%)
Strand = Plus / Plus


Query: 504 ttacaaataatagagtatggaaatattatcaaactcattcattagaatggttaattaaaa 563
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ttacaaataatagagtatggaaatattatcaaactcattcattagaatggttaattaaaa 563


Query: 564 ataatcattngcaattatttaaatatcgtttaaaacgtggtgattntatctcattcaatg 623
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ataatcattngcaattatttaaatatcgtttaaaacgtggtgattntatctcattcaatg 623


Query: 624 nacaatcatttaaacttattcataaattatttgatcaaattnaattatatgaagaaaaag 683
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 nacaatcatttaaacttattcataaattatttgatcaaattnaattatatgaagaaaaag 683


Query: 684 atgaaaaagaaa 695
||||||||||||
Sbjct: 684 atgaaaaagaaa 695


Score = 353 bits (178), Expect = 2e-97
Identities = 194/202 (96%)
Strand = Plus / Plus


Query: 1 caacaacaaatggaagatatagaatatcaagatatggtaataacagaatattcagataat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 caacaacaaatggaagatatagaatatcaagatatggtaataacagaatattcagataat 60


Query: 61 aataaaagtaatgatagtatagtagttgnnnnnnnnttatgatagtatgattgtagaaga 120
|||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 61 aataaaagtaatgatagtatagtagttgaaaaaaaattatgatagtatgattgtagaaga 120


Query: 121 tgatgttatggcaaatgttaacaaagaatcacaactaattgaacgagaagaatataacat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tgatgttatggcaaatgttaacaaagaatcacaactaattgaacgagaagaatataacat 180


Query: 181 acaacaatttgaaacacctcct 202
||||||||||||||||||||||
Sbjct: 181 acaacaatttgaaacacctcct 202


Score = 347 bits (175), Expect = 1e-95
Identities = 175/175 (100%)
Strand = Plus / Plus


Query: 302 ggtactgatataacaggtacagatacaaacatcactactactactaccactactgatacc 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 ggtactgatataacaggtacagatacaaacatcactactactactaccactactgatacc 361


Query: 362 ccaaccattaaaattaaatataatgatgaattattctttagaatgtggaaagataaagac 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 ccaaccattaaaattaaatataatgatgaattattctttagaatgtggaaagataaagac 421


Query: 422 ataagtcaaattatttggaaatgtgtgaaaataaggagtgatctatacaatactt 476
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 ataagtcaaattatttggaaatgtgtgaaaataaggagtgatctatacaatactt 476


>Contig-U14519-1 (Contig-U14519-1Q) /CSM_Contig/Contig-U14519-1Q.Seq.d
Length = 1452

Score = 42.1 bits (21), Expect = 8e-04
Identities = 21/21 (100%)
Strand = Plus / Plus


Query: 335 actactactactaccactact 355
|||||||||||||||||||||
Sbjct: 265 actactactactaccactact 285


Score = 34.2 bits (17), Expect = 0.19
Identities = 17/17 (100%)
Strand = Plus / Plus


Query: 338 actactactaccactac 354
|||||||||||||||||
Sbjct: 280 actactactaccactac 296


>Contig-U13543-1 (Contig-U13543-1Q) /CSM_Contig/Contig-U13543-1Q.Seq.d
Length = 600

Score = 42.1 bits (21), Expect = 8e-04
Identities = 21/21 (100%)
Strand = Plus / Plus


Query: 675 aagaaaaagatgaaaaagaaa 695
|||||||||||||||||||||
Sbjct: 333 aagaaaaagatgaaaaagaaa 353


Score = 34.2 bits (17), Expect = 0.19
Identities = 17/17 (100%)
Strand = Plus / Plus


Query: 679 aaaagatgaaaaagaaa 695
|||||||||||||||||
Sbjct: 322 aaaagatgaaaaagaaa 338


Database: CSM
Posted date: Jun 9, 2004 7:35 PM
Number of letters in database: 5,674,871
Number of sequences in database: 6905

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 13,513
Number of Sequences: 6905
Number of extensions: 13513
Number of successful extensions: 2006
Number of sequences better than 10.0: 288
length of query: 695
length of database: 5,674,871
effective HSP length: 16
effective length of query: 679
effective length of database: 5,564,391
effective search space: 3778221489
effective search space used: 3778221489
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2009. 7. 2
Homology vs DNA
Query= Contig-U04800-1 (Contig-U04800-1Q) /CSM_Contig/Contig-U04800-1Q.Seq.d
(695 letters)

Database: ddbj_A
102,105,510 sequences; 101,790,757,118 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(C92125) Dictyostelium discoideum slug cDNA, clone SSD121. 333 5e-87 1
(AU071988) Dictyostelium discoideum slug cDNA, clone SSD121. 174 3e-80 2
(AC116977) Dictyostelium discoideum chromosome 2 map 5515173... 40 8e-05 9
(AC175923) Strongylocentrotus purpuratus clone R3-12L10, WOR... 46 0.003 4
(AC180880) Strongylocentrotus purpuratus clone R3-3026D09, W... 40 0.004 3
(AC115604) Dictyostelium discoideum chromosome 2 map 4354771... 40 0.006 6
(AL929352) Plasmodium falciparum strain 3D7, chromosome 5, s... 34 0.008 9
(CU856521) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 46 0.010 3
(AC117280) Rattus norvegicus clone CH230-330C18, *** SEQUENC... 38 0.010 5
(AC116984) Dictyostelium discoideum chromosome 2 map 2567470... 40 0.027 9
(EK242078) 1095460236266 Global-Ocean-Sampling_GS-31-01-01-1... 52 0.029 1
(EK145539) 1095456019327 Global-Ocean-Sampling_GS-31-01-01-1... 52 0.029 1
(AI618883) SWOv3MCAM27E12SK Onchocerca volvulus molting L3 l... 52 0.029 1
(AW257775) SWOv3MCAM31G08SK Onchocerca volvulus molting L3 l... 52 0.029 1
(AC127460) Homo sapiens chromosome 5 clone RP11-689B23, comp... 42 0.038 2
(AC180269) Strongylocentrotus purpuratus clone R3-3123J22, W... 44 0.048 4
(AL844509) Plasmodium falciparum chromosome 13. 34 0.049 13
(AE014849) Plasmodium falciparum 3D7 chromosome 12, section ... 34 0.054 9
(AC168418) Strongylocentrotus purpuratus clone R3-4002B2, WO... 44 0.067 4
(AC111249) Rattus norvegicus clone CH230-21K16, *** SEQUENCI... 42 0.072 5
(CU463790) Zebrafish DNA sequence from clone DKEY-262K9 in l... 42 0.093 4
(AC116986) Dictyostelium discoideum chromosome 2 map 2234041... 40 0.10 9
(AC177399) Strongylocentrotus purpuratus clone R3-1031I17, W... 42 0.11 3
(AC005507) Plasmodium falciparum chromosome 12 clone PFYACB8... 34 0.11 9
(AY919313) Callinectes sapidus clone CS-7I-18P2-S4CM microsa... 50 0.11 1
(AP007831) Lotus japonicus genomic DNA, chromosome 1, clone:... 50 0.11 1
(EK298696) 1095462356083 Global-Ocean-Sampling_GS-31-01-01-1... 50 0.11 1
(FE839786) CCAG48716.b1 CCAG Petrolisthes cinctipes heart, g... 50 0.11 1
(FE838457) CCAG47851.b1 CCAG Petrolisthes cinctipes heart, g... 50 0.11 1
(FE823876) CCAG37629.b1 CCAG Petrolisthes cinctipes heart, g... 50 0.11 1
(FE804181) CCAG25507.b1 CCAG Petrolisthes cinctipes heart, g... 50 0.11 1
(FE796393) CCAG20795.b1 CCAG Petrolisthes cinctipes heart, g... 50 0.11 1
(FE795305) CCAG20118.b2 CCAG Petrolisthes cinctipes heart, g... 50 0.11 1
(FE782957) CCAG12942.b7 CCAG Petrolisthes cinctipes heart, g... 50 0.11 1
(FE777518) CCAG9317.b3 CCAG Petrolisthes cinctipes heart, gi... 50 0.11 1
(FE775296) CCAG8157.b3 CCAG Petrolisthes cinctipes heart, gi... 50 0.11 1
(FE768096) CCAG4171.g1 CCAG Petrolisthes cinctipes heart, gi... 50 0.11 1
(FE768095) CCAG4171.b3 CCAG Petrolisthes cinctipes heart, gi... 50 0.11 1
(FE761337) CAYF8134.g1 CAYF Petrolisthes cinctipes heart, wh... 50 0.11 1
(FE761336) CAYF8134.b1 CAYF Petrolisthes cinctipes heart, wh... 50 0.11 1
(FE759897) CAYF7216.g3 CAYF Petrolisthes cinctipes heart, wh... 50 0.11 1
(FE759896) CAYF7216.b3 CAYF Petrolisthes cinctipes heart, wh... 50 0.11 1
(FE759472) CAYF6941.g3 CAYF Petrolisthes cinctipes heart, wh... 50 0.11 1
(FE759471) CAYF6941.b3 CAYF Petrolisthes cinctipes heart, wh... 50 0.11 1
(FE759087) CAYF6679.g1 CAYF Petrolisthes cinctipes heart, wh... 50 0.11 1
(FE759086) CAYF6679.b2 CAYF Petrolisthes cinctipes heart, wh... 50 0.11 1
(FE759003) CAYF6629.b1 CAYF Petrolisthes cinctipes heart, wh... 50 0.11 1
(FE758938) CAYF6584.g1 CAYF Petrolisthes cinctipes heart, wh... 50 0.11 1
(FE758937) CAYF6584.b2 CAYF Petrolisthes cinctipes heart, wh... 50 0.11 1
(FE758486) CAYF6289.g1 CAYF Petrolisthes cinctipes heart, wh... 50 0.11 1
(FE758485) CAYF6289.b1 CAYF Petrolisthes cinctipes heart, wh... 50 0.11 1
(FE750217) CAYC893.b1 CAYC Petrolisthes cinctipes heart, ner... 50 0.11 1
(AC116305) Dictyostelium discoideum chromosome 2 map 1005175... 38 0.13 9
(BX511180) Zebrafish DNA sequence from clone CH211-221H1 in ... 42 0.16 3
(AB086179) Anthoceros formosae chloroplast DNA, complete gen... 42 0.19 5
(AC179843) Strongylocentrotus purpuratus clone R3-1007O7, WO... 42 0.21 5
(AC180430) Strongylocentrotus purpuratus clone R3-3103K18, W... 40 0.23 3
(AC184268) Strongylocentrotus purpuratus clone R3-12M10, WOR... 46 0.23 3
(BX321884) Zebrafish DNA sequence from clone DKEYP-29A10 in ... 36 0.24 5
(AC173370) Strongylocentrotus purpuratus clone R3-3018B6, WO... 42 0.24 3
(AC097669) Rattus norvegicus clone CH230-167A15, *** SEQUENC... 42 0.27 2
(AC178730) Strongylocentrotus purpuratus clone R3-13D8, WORK... 44 0.29 2
(AC116551) Dictyostelium discoideum chromosome 2 map complem... 36 0.29 8
(AC176543) Strongylocentrotus purpuratus clone R3-3075O19, W... 44 0.29 5
(EK094615) 1092962026788 Global-Ocean-Sampling_GS-31-01-01-1... 46 0.29 2
(AE014836) Plasmodium falciparum 3D7 chromosome 11 section 1... 36 0.33 7
(AC179825) Strongylocentrotus purpuratus clone R3-1012K7, WO... 46 0.37 3
(CR847865) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 42 0.38 5
(AC177635) Strongylocentrotus purpuratus clone R3-1020H20, W... 42 0.41 4
(AU273322) Hemicentrotus pulcherrimus mRNA, clone: 018a02f_E... 44 0.42 2
(AP010070) Lotus japonicus genomic DNA, chromosome 5, clone:... 40 0.44 2
(AU272774) Hemicentrotus pulcherrimus mRNA, clone: 001b01f_H... 44 0.45 2
(AY764183) Aplysia californica syntaxin mRNA, complete cds. 48 0.45 1
(AC123110) Rattus norvegicus clone CH230-208F13, *** SEQUENC... 48 0.45 1
(AC116294) Rattus norvegicus clone CH230-287P4, *** SEQUENCI... 48 0.45 1
(AC178354) Strongylocentrotus purpuratus clone R3-3105K15, W... 48 0.45 1
(AC178349) Strongylocentrotus purpuratus clone R3-3105I16, W... 48 0.45 1
(AC178343) Strongylocentrotus purpuratus clone R3-3105E03, W... 48 0.45 1
(AC168571) Strongylocentrotus purpuratus clone R3-3065M21, W... 48 0.45 1
(AC168502) Strongylocentrotus purpuratus clone R3-3117D16, W... 48 0.45 1
(EK248885) 1095460269172 Global-Ocean-Sampling_GS-31-01-01-1... 48 0.45 1
(DE896527) Macropus eugenii DNA, BAC clone: MEB1-075B21_F, 5... 48 0.45 1
(AG555399) Mus musculus molossinus DNA, clone:MSMg01-472P22.... 48 0.45 1
(AG548226) Mus musculus molossinus DNA, clone:MSMg01-463J20.... 48 0.45 1
(AG431388) Mus musculus molossinus DNA, clone:MSMg01-306N13.... 48 0.45 1
(AJ568447) Antirrhinum majus EST, clone ama_0_e23_t3. 48 0.45 1
(BU404883) 604138052F1 CSEQCHN59 Gallus gallus cDNA clone Ch... 48 0.45 1
(GE432410) 294533492 Nasonia vitripennis Adult Male Nasonia ... 48 0.45 1
(GE416255) 294497398 Nasonia vitripennis Adult Male Nasonia ... 48 0.45 1
(GE379346) 292350661 Nasonia vitripennis Male Pupae Nasonia ... 48 0.45 1
(GE365792) 292292280 Nasonia vitripennis Male Pupae Nasonia ... 48 0.45 1
(FG297046) 1108793273723 New World Screwworm Larvae 9387 EST... 48 0.45 1
(FG283564) 1108770626148 New World Screwworm Egg 9261 ESTs C... 48 0.45 1
(FE832542) CCAG44101.b1 CCAG Petrolisthes cinctipes heart, g... 48 0.45 1
(FE830091) CCAG42600.b1 CCAG Petrolisthes cinctipes heart, g... 48 0.45 1
(FE787025) CCAG15290.b3 CCAG Petrolisthes cinctipes heart, g... 48 0.45 1
(FE759238) CAYF6779.g1 CAYF Petrolisthes cinctipes heart, wh... 48 0.45 1
(FE759237) CAYF6779.b1 CAYF Petrolisthes cinctipes heart, wh... 48 0.45 1
(AU273354) Hemicentrotus pulcherrimus mRNA, clone: 018b01f_B... 44 0.45 2
(AC141159) Rattus norvegicus clone CH230-445H7, *** SEQUENCI... 44 0.47 2
(AC177055) Strongylocentrotus purpuratus clone R3-4004C20, W... 42 0.49 3
(AC177171) Strongylocentrotus purpuratus clone R3-4015O06, W... 42 0.50 4
(AU273469) Hemicentrotus pulcherrimus mRNA, clone: 018b01f_G... 44 0.57 2
(AU272801) Hemicentrotus pulcherrimus mRNA, clone: 001b02f_C... 44 0.59 2
(AL929358) Plasmodium falciparum strain 3D7, chromosome 9; s... 40 0.62 6
(AU273568) Hemicentrotus pulcherrimus mRNA, clone: 019b02f_B... 44 0.63 2
(AC163479) Bos taurus clone CH240-124B21, WORKING DRAFT SEQU... 46 0.67 3
(AC114220) Rattus norvegicus clone CH230-318O23, *** SEQUENC... 42 0.82 2
(FM992690) Candida dubliniensis CD36 chromosome 3, complete ... 38 0.82 12
(AC176691) Strongylocentrotus purpuratus clone R3-112B17, WO... 38 0.85 5
(AC005505) Plasmodium falciparum chromosome 12 clone PFYAC18... 34 0.90 7
(BX538352) Cryptosporidium parvum chromosome 6, complete seq... 34 0.92 2
(CU570787) Zebrafish DNA sequence from clone CH73-272H16 in ... 34 0.97 2
(AL929353) Plasmodium falciparum strain 3D7, chromosome 5, s... 34 0.97 11
(AE014834) Plasmodium falciparum 3D7 chromosome 10 section 6... 36 1.0 7
(AC168485) Strongylocentrotus purpuratus clone R3-3117K14, W... 42 1.1 3
(BX284684) Zebrafish DNA sequence from clone DKEY-14I10 in l... 42 1.1 6
(AU273087) Hemicentrotus pulcherrimus mRNA, clone: 003a01f_D... 42 1.1 2
(EY370375) CAXA12882.fwd CAXA Helobdella robusta Subtracted ... 36 1.1 2
(EK418132) 1095515482859 Global-Ocean-Sampling_GS-31-01-01-1... 38 1.1 2
(AC176848) Strongylocentrotus purpuratus clone R3-1110H21, W... 44 1.2 3
(AC178737) Strongylocentrotus purpuratus clone R3-3002L17, W... 44 1.2 3
(AC176957) Strongylocentrotus purpuratus clone R3-34H08, WOR... 42 1.3 3
(AC201679) Strongylocentrotus purpuratus clone R3-4001E16, W... 44 1.3 4
(AC202592) Medicago truncatula clone mth2-56c12, WORKING DRA... 36 1.3 5
(AC115683) Dictyostelium discoideum chromosome 2 map complem... 42 1.3 3
(AU273253) Hemicentrotus pulcherrimus mRNA, clone: 018a01f_E... 42 1.3 2
(AC157350) Medicago truncatula clone mth2-143n6, complete se... 38 1.4 6
(AE014843) Plasmodium falciparum 3D7 chromosome 11 section 8... 36 1.4 7
(AC176704) Strongylocentrotus purpuratus clone R3-3088O16, W... 40 1.4 6
(AL714030) Zebrafish DNA sequence from clone BUSM1-223C6 in ... 46 1.5 2
(AU273094) Hemicentrotus pulcherrimus mRNA, clone: 003a01f_E... 42 1.5 2
(AC233962) Solanum tuberosum chromosome 6 clone RHPOTKEY012K... 46 1.5 3
(CR769786) Zebrafish DNA sequence from clone DKEY-256I5 in l... 40 1.5 2
(AC114834) Rattus norvegicus clone CH230-246J2, *** SEQUENCI... 40 1.6 2
(AU272979) Hemicentrotus pulcherrimus mRNA, clone: 002b01f_D... 42 1.6 2
(AC176111) Strongylocentrotus purpuratus clone R3-3023G8, WO... 44 1.6 4
(AC168376) Strongylocentrotus purpuratus clone R3-4013H3, WO... 42 1.6 5
(AU273187) Hemicentrotus pulcherrimus mRNA, clone: 003b01f_D... 42 1.7 2
(CR927479) Zebrafish DNA sequence from clone CH73-111B21. 46 1.8 1
(CR407592) Zebrafish DNA sequence from clone DKEY-166N5. 46 1.8 1
(CR394563) Zebrafish DNA sequence from clone CH211-147P18. 46 1.8 1
(CR388176) Zebrafish DNA sequence from clone DKEY-109D19 in ... 46 1.8 1
(BX842702) Zebrafish DNA sequence from clone DKEY-226D17 in ... 46 1.8 1
(BX571969) Zebrafish DNA sequence from clone DKEY-93P1 in li... 46 1.8 1
(BX571821) Zebrafish DNA sequence from clone DKEY-286J7 in l... 46 1.8 1
(EU188858) Synthetic construct hexose transporter (OptPfHT) ... 46 1.8 1
(AL928877) Mouse DNA sequence from clone RP23-52D18 on chrom... 46 1.8 1
(AC155920) Monodelphis domestica, clone XX-22D10, complete s... 46 1.8 1
(AY188984) Penaeus monodon clone t609 microsatellite sequence. 46 1.8 1
(AC171134) Helobdella robusta clone CH306-1A5, complete sequ... 46 1.8 1
(AL137063) Human DNA sequence from clone RP1-104L14 on chrom... 46 1.8 1
(AC141819) Apis mellifera clone CH224-62B23, WORKING DRAFT S... 46 1.8 1
(AC141488) Rattus norvegicus clone CH230-193E12, WORKING DRA... 46 1.8 1
(AC131504) Lytechinus variegatus clone Lv92H22, *** SEQUENCI... 46 1.8 1
(AC125840) Rattus norvegicus clone CH230-55A4, *** SEQUENCIN... 46 1.8 1
(CU929363) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 46 1.8 1
(BX842695) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 46 1.8 1
(AC221987) Bos taurus clone CH240-376K2, WORKING DRAFT SEQUE... 46 1.8 1
(AC201373) Strongylocentrotus purpuratus clone R3-17E15, WOR... 46 1.8 1
(AC201016) Strongylocentrotus purpuratus clone R3-12H10, WOR... 46 1.8 1
(AC181739) Strongylocentrotus purpuratus clone R3-1037I08, W... 46 1.8 1
(AC181640) Strongylocentrotus purpuratus clone R3-1103G06, W... 46 1.8 1
(AC181081) Strongylocentrotus purpuratus clone R3-3048G17, W... 46 1.8 1
(AC180391) Strongylocentrotus purpuratus clone R3-3106C19, W... 46 1.8 1
(AC180251) Strongylocentrotus purpuratus clone R3-3008H17, W... 46 1.8 1
(AC179658) Strongylocentrotus purpuratus clone R3-1024G10, W... 46 1.8 1
(AC179476) Strongylocentrotus purpuratus clone R3-63L7, WORK... 46 1.8 1
(AC179457) Strongylocentrotus purpuratus clone R3-63G17, WOR... 46 1.8 1
(AC178770) Strongylocentrotus purpuratus clone R3-3001O05, W... 46 1.8 1
(AC178711) Strongylocentrotus purpuratus clone R3-12L17, WOR... 46 1.8 1
(AC177219) Strongylocentrotus purpuratus clone R3-1034M09, W... 46 1.8 1
(AC177163) Strongylocentrotus purpuratus clone R3-4015G14, W... 46 1.8 1
(AC176951) Strongylocentrotus purpuratus clone R3-34E13, WOR... 46 1.8 1
(AC176933) Strongylocentrotus purpuratus clone R3-33L24, WOR... 46 1.8 1
(AC175977) Strongylocentrotus purpuratus clone R3-17G11, WOR... 46 1.8 1
(AC174088) Strongylocentrotus purpuratus clone R3-17C5, WORK... 46 1.8 1
(AC168687) Strongylocentrotus purpuratus clone R3-3014J3, WO... 46 1.8 1
(BH166266) ENTSX82TF Entamoeba histolytica Sheared DNA Entam... 46 1.8 1
(ET659293) MUGQ_CH252P444M01Sp6_CP852_003 CHORI-252 Vervet M... 46 1.8 1
(ET169708) MUGQ_CH252P371C05Sp6_CP698_029 CHORI-252 Vervet M... 46 1.8 1
(EK372836) 1095469425879 Global-Ocean-Sampling_GS-31-01-01-1... 46 1.8 1
(DE537654) Bombyx mori genomic DNA, Fosmid clone:GBMFno164_o... 46 1.8 1
(BX239079) Danio rerio genomic clone DKEY-282I5, genomic sur... 46 1.8 1
(EC330264) GUTF089626K2 POSSUM_01-POSSUM-GUT-2KB Trichosurus... 46 1.8 1
(CU554386) Spc_B1BB02 cDNA clone of Developmental Stages Lib... 46 1.8 1
(BU011842) QGJ17F07.yg.ab1 QG_EFGHJ lettuce serriola Lactuca... 46 1.8 1
(FE828988) CCAG41935.b1 CCAG Petrolisthes cinctipes heart, g... 46 1.8 1
(FE810172) CCAG29047.b1 CCAG Petrolisthes cinctipes heart, g... 46 1.8 1
(FE805344) CCAG26208.b1 CCAG Petrolisthes cinctipes heart, g... 46 1.8 1
(FE797843) CCAG21677.b1 CCAG Petrolisthes cinctipes heart, g... 46 1.8 1
(EY923634) RR4DT35TF RR4(PB) Raphanus raphanistrum subsp. la... 46 1.8 1
(EY339691) CAWY9837.fwd CAWY Helobdella robusta Subtracted E... 46 1.8 1
(EX949515) lj97b12.g8 Gnetum gnemon leaf (NYBG) Gnetum gnemo... 46 1.8 1
(EX949296) lj94f10.g7 Gnetum gnemon leaf (NYBG) Gnetum gnemo... 46 1.8 1
(ES469138) PC-E04 Brachionus plicatilis NHIL unnormalized cD... 46 1.8 1
(CP000517) Lactobacillus helveticus DPC 4571, complete genome. 46 1.8 1
(AC179723) Strongylocentrotus purpuratus clone R3-1018O19, W... 42 1.8 4
(AC180476) Strongylocentrotus purpuratus clone R3-3100G01, W... 42 1.8 3
(FM992692) Candida dubliniensis CD36 chromosome 5, complete ... 42 1.9 12
(CR450735) Zebrafish DNA sequence from clone CH211-274B17 in... 40 2.0 4
(AC176184) Strongylocentrotus purpuratus clone R3-3066N14, W... 40 2.0 3
(AU272803) Hemicentrotus pulcherrimus mRNA, clone: 001b02f_C... 42 2.0 2
(AU273471) Hemicentrotus pulcherrimus mRNA, clone: 018b01f_G... 42 2.0 2
(AC094937) Rattus norvegicus clone CH230-6E6, WORKING DRAFT ... 40 2.1 5
(AC117076) Dictyostelium discoideum chromosome 2 map 3323568... 36 2.1 6
(AU273427) Hemicentrotus pulcherrimus mRNA, clone: 018b01f_C... 42 2.1 2
(AU272848) Hemicentrotus pulcherrimus mRNA, clone: 001b02f_H... 42 2.1 2
(AU272547) Hemicentrotus pulcherrimus mRNA, clone: 001a01f_A... 42 2.2 2
(AU273384) Hemicentrotus pulcherrimus mRNA, clone: 018b01f_E... 42 2.3 2
(AC122814) Mus musculus BAC clone RP23-234A12 from 6, comple... 44 2.3 2
(AL954182) Zebrafish DNA sequence from clone CH211-205N18 in... 42 2.4 2
(AU273580) Hemicentrotus pulcherrimus mRNA, clone: 019b02f_D... 42 2.4 2
(AC048356) Homo sapiens chromosome 20 clone RP11-250P20 map ... 42 2.5 4
(AC178019) Strongylocentrotus purpuratus clone R3-3055D6, WO... 42 2.5 2
(CU972504) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 34 2.6 6
(AC180395) Strongylocentrotus purpuratus clone R3-3106N12, W... 40 2.6 3
(AC116957) Dictyostelium discoideum chromosome 2 map 1685067... 40 2.6 9
(AC149996) Strongylocentrotus purpuratus clone R3-60F3, WORK... 44 2.6 2
(BX470222) Zebrafish DNA sequence from clone DKEYP-120F10 in... 40 2.7 2
(CR812928) Zebrafish DNA sequence from clone DKEY-238M17 in ... 36 2.8 6
(AU060735) Dictyostelium discoideum slug cDNA, clone SLB284. 42 2.8 2
(CD404497) Gm_ck27339 Soybean induced by Salicylic Acid Glyc... 42 2.8 2
(AU272626) Hemicentrotus pulcherrimus mRNA, clone: 001a01f_H... 42 2.9 2
(AE014850) Plasmodium falciparum 3D7 chromosome 12, section ... 34 2.9 7
(AC000022) Genomic sequence from Human Y, complete sequence. 42 2.9 2
(AC181959) Strongylocentrotus purpuratus clone R3-1003E20, W... 42 2.9 3
(AC175528) Strongylocentrotus purpuratus clone R3-1113J22, *... 36 3.0 3
(AC179567) Strongylocentrotus purpuratus clone R3-8F14, WORK... 34 3.0 7
(AE014821) Plasmodium falciparum 3D7 chromosome 14 section 6... 34 3.0 10
(AC106976) Rattus norvegicus clone CH230-291E19, *** SEQUENC... 38 3.1 4
(BJ409603) Dictyostelium discoideum cDNA clone:dds42l15, 3' ... 34 3.1 2
(AC005139) Plasmodium falciparum chromosome 12, *** SEQUENCI... 34 3.2 7
(BX957320) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 40 3.3 5
(AC115599) Dictyostelium discoideum chromosome 2 map 4229098... 38 3.3 7
(BX537338) Zebrafish DNA sequence from clone DKEY-258E8 in l... 34 3.3 2
(BJ350714) Dictyostelium discoideum cDNA clone:dda40d24, 3' ... 42 3.4 2
(CR854984) Zebrafish DNA sequence from clone DKEY-62B6 in li... 34 3.4 2
(FE121162) LV_HC_RA073B21f Litopenaeus vannamei hemocyte cDN... 42 3.4 2
(AC172169) Atelerix albiventris clone LB4-113H10, WORKING DR... 34 3.4 5
(CR352231) Zebrafish DNA sequence from clone CH211-216G8 in ... 34 3.4 2
(AC179836) Strongylocentrotus purpuratus clone R3-1012D6, WO... 34 3.4 2
(BX890602) Zebrafish DNA sequence from clone DKEYP-109H9 in ... 34 3.4 2
(CU326366) Zebrafish DNA sequence from clone DKEYP-117G7 in ... 34 3.5 2
(AL929535) Zebrafish DNA sequence from clone CH211-151O1. 34 3.5 2
(AC176498) Strongylocentrotus purpuratus clone R3-3072G15, W... 34 3.5 2
(BX248233) Zebrafish DNA sequence from clone CH211-125N11 in... 34 3.5 2
(CR450683) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 34 3.5 2
(AC176912) Strongylocentrotus purpuratus clone R3-32G2, WORK... 34 3.5 2
(BX119903) Zebrafish DNA sequence from clone CH211-188I6 in ... 34 3.5 2
(EJ243754) 1095333029718 Global-Ocean-Sampling_GS-27-01-01-1... 42 3.5 2
(BJ433029) Dictyostelium discoideum cDNA clone:ddv20f15, 3' ... 34 3.6 2
(CR855270) Zebrafish DNA sequence from clone DKEY-256G22 in ... 34 3.6 2
(AE014848) Plasmodium falciparum 3D7 chromosome 12, section ... 36 3.6 8
(AW902423) QV3-NN1023-130500-178-d11 NN1023 Homo sapiens cDN... 34 3.6 3
(AL808025) Mouse DNA sequence from clone RP23-45M22 on chrom... 38 3.6 3
(AC025919) Homo sapiens chromosome 15 clone RP11-947O24 map ... 36 3.7 4
(BX154986) Danio rerio genomic clone DKEY-114G23, genomic su... 42 3.7 2
(AC180230) Strongylocentrotus purpuratus clone R3-36M18, WOR... 42 3.7 3
(AE014847) Plasmodium falciparum 3D7 chromosome 12, section ... 34 3.8 9
(AF402141) Schizophyllum commune mitochondrial DNA, complete... 34 3.8 7
(FH634391) CHO_OF4581xf19r1.ab1 CHO_OF4 Nicotiana tabacum ge... 42 3.9 2
(BH164874) ENTRD77TF Entamoeba histolytica Sheared DNA Entam... 40 4.0 2
(EU404104) Campylobacter jejuni strain RM1508 class J lipool... 34 4.0 2
(EY369144) CAXA12202.fwd CAXA Helobdella robusta Subtracted ... 34 4.0 2
(AZ187404) SP_1009_A2_B09_T7A Strongylocentrotus purpuratus,... 40 4.0 2
(AY080407) AY080407 Scripps Pier (La Jolla, CA) uncultured v... 40 4.0 2
(AB114682) Schistosoma haematobium mRNA for paramyosin, comp... 44 4.0 2
(EK344077) 1095467156251 Global-Ocean-Sampling_GS-31-01-01-1... 42 4.2 2
(AM474173) Vitis vinifera contig VV78X199061.3, whole genome... 32 4.3 2
(AL929016) Zebrafish DNA sequence from clone DKEY-24J9 in li... 40 4.3 4
(EJ435734) 1093015279194 Global-Ocean-Sampling_GS-28-01-01-1... 40 4.3 2
(EK347791) 1095467577379 Global-Ocean-Sampling_GS-31-01-01-1... 42 4.3 2
(DX994275) CHORI103-16L17.TJ CHORI103 Schistosoma mansoni ge... 38 4.3 2
(AC168657) Strongylocentrotus purpuratus clone R3-3015P5, WO... 40 4.4 2
(AC120253) Rattus norvegicus clone CH230-392K9, WORKING DRAF... 42 4.4 4
(AL408080) T7 end of clone AV0AA006D10 of library AV0AA from... 38 4.5 2
(AC106513) Rattus norvegicus clone CH230-201M14, WORKING DRA... 38 4.5 3
(CU467636) Zebrafish DNA sequence from clone CH73-325A8 in l... 34 4.5 5
(EJ651801) 1092954003969 Global-Ocean-Sampling_GS-30-02-01-1... 34 4.6 2
(AC179872) Strongylocentrotus purpuratus clone R3-1007A14, W... 40 4.6 4
(EJ675494) 1092955076730 Global-Ocean-Sampling_GS-30-02-01-1... 34 4.6 2
(EB927839) 12768128 ZF31 Danio rerio cDNA clone 3273216, mRN... 34 4.7 2
(CD408942) Gm_ck3561 Soybean induced by Salicylic Acid Glyci... 40 4.9 2
(GC519953) Sequence 2615 from patent US 7408052. 40 5.0 2
(BI942477) si52b12.y1 Gm-r1030 Glycine max cDNA clone GENOME... 40 5.0 2
(BX088564) Zebrafish DNA sequence from clone CH211-239H19 in... 40 5.0 3
(AC181894) Strongylocentrotus purpuratus clone R3-1016J06, W... 40 5.1 4
(AC179177) Strongylocentrotus purpuratus clone R3-1107H1, WO... 42 5.1 2
(GC519930) Sequence 2592 from patent US 7408052. 40 5.2 2
(AC116979) Dictyostelium discoideum chromosome 2 map 6445720... 38 5.2 8
(EH224300) JGI_ABWZ5150.fwd ABWZ Phakopsora pachyrhizi infec... 40 5.3 2
(CR759874) Zebrafish DNA sequence from clone CH211-214H24 in... 42 5.3 5
(AE014825) Plasmodium falciparum 3D7 chromosome 14 section 1... 40 5.3 6
(AC177111) Strongylocentrotus purpuratus clone R3-4014C23, W... 42 5.4 3
(AL844507) Plasmodium falciparum chromosome 8. 36 5.4 13
(AM425556) Vitis vinifera contig VV78X017956.3, whole genome... 36 5.5 2
(CD392138) Gm_ck11209 Soybean induced by Salicylic Acid Glyc... 40 5.5 2
(AC176999) Strongylocentrotus purpuratus clone R3-1039A24, W... 36 5.6 4
(AC181816) Strongylocentrotus purpuratus clone R3-1023O3, WO... 40 5.7 4
(AC179811) Strongylocentrotus purpuratus clone R3-1013K2, WO... 44 5.8 4
(BW654372) Glycine max cDNA clone: GMFL01-07-A05, 3'end, sim... 40 5.8 2
(AL627262) Zebrafish DNA sequence from clone RP71-1L7 in lin... 42 5.8 3
(AC211181) Zea mays chromosome 8 clone CH201-317F7; ZMMBBc03... 40 5.9 3
(AC181145) Strongylocentrotus purpuratus clone R3-3037J19, W... 40 5.9 6
(AC226611) Mus musculus chromosome Y clone CH36-92C14, WORKI... 34 5.9 6
(FJ607551) Acanthepeira stellata cytochrome oxidase subunit ... 34 6.0 2
(AC117081) Dictyostelium discoideum chromosome 2 map 5862124... 34 6.0 8
(AC201398) Strongylocentrotus purpuratus clone R3-17K20, WOR... 42 6.1 5
(AC181036) Strongylocentrotus purpuratus clone R3-3052F09, W... 44 6.2 3
(AL929355) Plasmodium falciparum strain 3D7, chromosome 9; s... 36 6.2 9
(AL049180) Plasmodium falciparum DNA *** SEQUENCING IN PROGR... 36 6.2 9
(FG288720) 1108793274846 New World Screwworm Egg 9261 ESTs C... 34 6.2 3
(BX640537) Zebrafish DNA sequence from clone DKEYP-79B7 in l... 42 6.3 2
(CA819328) sau72g07.y1 Gm-c1071 Glycine max cDNA clone SOYBE... 40 6.4 2
(AC148970) Medicago truncatula chromosome 2 clone mth2-74j13... 36 6.6 6
(AC176318) Strongylocentrotus purpuratus clone R3-3054G14, W... 42 6.6 4
(AC178160) Strongylocentrotus purpuratus clone R3-1116N13, W... 44 6.6 3
(EJ545076) 1092956081637 Global-Ocean-Sampling_GS-29-01-01-1... 34 6.7 3
(AC113750) Rattus norvegicus clone CH230-186O6, *** SEQUENCI... 42 6.7 5
(DB982750) Glycine max cDNA, clone: GMFL02-28-H08, 3'end. 40 6.8 2
(BW672044) Glycine max cDNA clone: GMFL01-34-C01, 3'end, sim... 40 6.9 2
(BW653126) Glycine max cDNA clone: GMFL01-05-O06, 3'end, sim... 40 6.9 2
(AC176980) Strongylocentrotus purpuratus clone R3-1103C23, W... 38 7.0 2
(BI945795) ss17d01.y1 Gm-c1047 Glycine max cDNA clone GENOME... 40 7.0 2
(DQ481664) Takifugu rubripes HoxAb gene cluster, complete se... 44 7.0 1
(CU928227) Zebrafish DNA sequence from clone CH73-288O11 in ... 44 7.0 1
(CU633611) Zebrafish DNA sequence from clone CH211-128J1 in ... 44 7.0 1
(CU302303) Zebrafish DNA sequence from clone CH73-149P20 in ... 44 7.0 1
(CU179638) Zebrafish DNA sequence from clone RP71-49K16 in l... 44 7.0 1
(CU019630) Zebrafish DNA sequence from clone CH211-211I20 in... 44 7.0 1
(CR394537) Zebrafish DNA sequence from clone CH211-119D19 in... 44 7.0 1
(CR381647) Zebrafish DNA sequence from clone CH211-248G18 in... 44 7.0 1
(CR381537) Zebrafish DNA sequence from clone DKEYP-9F9 in li... 44 7.0 1
(CR354378) Zebrafish DNA sequence from clone CH211-131D10 in... 44 7.0 1
(BX957341) Zebrafish DNA sequence from clone CH211-11N16 in ... 44 7.0 1
(BX897736) Zebrafish DNA sequence from clone CH211-181B15 in... 44 7.0 1
(BX649308) Zebrafish DNA sequence from clone CH211-223K15 in... 44 7.0 1
(BX470105) Zebrafish DNA sequence from clone CH211-252D21 in... 44 7.0 1
(BX072529) Zebrafish DNA sequence from clone DKEY-20D17 in l... 44 7.0 1
(AY965680) Eptatretus stoutii nonfunctional variable lymphoc... 44 7.0 1
(AL627256) Zebrafish DNA sequence from clone RP71-1L10 in li... 44 7.0 1
(AL592077) Zebrafish DNA sequence from clone XX-DZ35C18. 44 7.0 1
(U53466) Cydia pomonella granulovirus, complete genome. 44 7.0 1
(AL645783) Mouse DNA sequence from clone RP23-459H16 on chro... 44 7.0 1
(AL626775) Mouse DNA sequence from clone RP23-325M14 on chro... 44 7.0 1
(AL590625) Mouse DNA sequence from clone RP23-467M8 on chrom... 44 7.0 1
(AL512586) Mouse DNA sequence from clone RP23-37O17 on chrom... 44 7.0 1
(AC159820) Mus musculus BAC clone RP23-158K20 from chromosom... 44 7.0 1
(AC154545) Mus musculus BAC clone RP23-431G16 from chromosom... 44 7.0 1
(AC141644) Mus musculus BAC clone RP23-115F21 from chromosom... 44 7.0 1
(AC117799) Mus musculus chromosome 5, clone RP24-556H22, com... 44 7.0 1
(AC112139) Mus musculus strain C57BL/6J clone rp23-170m6 map... 44 7.0 1
(AC105842) Rattus norvegicus Renin BAC CH230-29P15 () comple... 44 7.0 1
(AC192574) Pan troglodytes BAC clone CH251-405E24 from chrom... 44 7.0 1
(AC182586) Pan troglodytes BAC clone CH251-499F21 from chrom... 44 7.0 1
(AC169701) Rhesus Macaque BAC CH250-11P19 (Children's Hospi... 44 7.0 1
(EF426731) Iris missouriensis clone 14 retrotransposon IRRE,... 44 7.0 1
(DQ512733) Cardamine hirsuta asymmetric leaves 1 (AS1) mRNA,... 44 7.0 1
(AP008211) Oryza sativa (japonica cultivar-group) genomic DN... 44 7.0 1
(AP007161) Aspergillus oryzae RIB40 genomic DNA, SC012. 44 7.0 1
(AP006852) Candida albicans genomic DNA, chromosome 7, compl... 44 7.0 1
(AM435357) Vitis vinifera, whole genome shotgun sequence, co... 44 7.0 1
(AK289211) Oryza sativa Japonica Group cDNA, clone: J100060N... 44 7.0 1
(AC117265) Oryza sativa Japonica Group chromosome 5 clone OJ... 44 7.0 1
(FB571369) Sequence 236 from Patent EP1865317. 44 7.0 1
(FB571313) Sequence 180 from Patent EP1865317. 44 7.0 1
(FB571266) Sequence 133 from Patent EP1865317. 44 7.0 1
(EA706978) Sequence 85857 from patent US 7365185. 44 7.0 1
(AR558559) Sequence 13690 from patent US 6747137. 44 7.0 1
(AR551508) Sequence 6639 from patent US 6747137. 44 7.0 1
(FJ439558) Ceratosolen fusciceps clone Cer61 microsatellite ... 44 7.0 1
(EF587247) Monobia quadridens microsatellite Mq24 sequence. 44 7.0 1
(EF442730) Allonemobius fasciatus clone AF16 microsatellite ... 44 7.0 1
(DQ137795) Schistosoma mansoni clone 94TAGA microsatellite s... 44 7.0 1
(AF132519) Haemonchus contortus putative zinc metallopeptida... 44 7.0 1
(AF108925) Mercenaria mercenaria microsatellite Mme277 seque... 44 7.0 1
(AE001402) Plasmodium falciparum 3D7 chromosome 2 section 39... 44 7.0 1
(AC171141) Helobdella robusta clone CH306-1B3, complete sequ... 44 7.0 1
(AC116922) Dictyostelium discoideum chromosome 2 map 6061442... 44 7.0 1
(AP006309) Homo sapiens genomic DNA, chromosome 3 clone:RP11... 44 7.0 1
(AL445670) Human DNA sequence from clone RP11-520B13 on chro... 44 7.0 1
(AL161442) Human DNA sequence from clone RP6-102F8 on chromo... 44 7.0 1
(AL139396) Human DNA sequence from clone RP11-258C19 on chro... 44 7.0 1
(AL138920) Human DNA sequence from clone RP11-148B2 on chrom... 44 7.0 1
(AL049870) Human chromosome 14 DNA sequence BAC R-857B24 of ... 44 7.0 1
(AC064872) Homo sapiens BAC clone RP11-601H16 from 2, comple... 44 7.0 1
(AC162146) Loxodonta africana clone VMRC15-600G13, WORKING D... 44 7.0 1
(AC157829) Strongylocentrotus purpuratus clone R3-13A6, WORK... 44 7.0 1
(AC149994) Strongylocentrotus purpuratus clone R3-60I2, WORK... 44 7.0 1
(AC149991) Strongylocentrotus purpuratus clone R3-60A2, WORK... 44 7.0 1
(AC144641) Didelphis virginiana clone LB3-89M24, WORKING DRA... 44 7.0 1
(AC142479) Rattus norvegicus clone CH230-358P1, WORKING DRAF... 44 7.0 1
(AC141377) Rattus norvegicus clone CH230-259J22, WORKING DRA... 44 7.0 1
(AC139641) Rattus norvegicus clone CH230-195F7, *** SEQUENCI... 44 7.0 1
(AC129359) Rattus norvegicus clone CH230-406D8, WORKING DRAF... 44 7.0 1
(AC129051) Rattus norvegicus clone CH230-89P7, *** SEQUENCIN... 44 7.0 1
(AC129048) Rattus norvegicus clone CH230-333I11, *** SEQUENC... 44 7.0 1
(AC127156) Rattus norvegicus clone CH230-7B10, *** SEQUENCIN... 44 7.0 1
(AC121172) Rattus norvegicus clone CH230-170L14, *** SEQUENC... 44 7.0 1
(AC120226) Rattus norvegicus clone CH230-263H15, *** SEQUENC... 44 7.0 1
(AC119373) Rattus norvegicus clone CH230-481C24, WORKING DRA... 44 7.0 1
(AC119130) Rattus norvegicus clone CH230-414I23, *** SEQUENC... 44 7.0 1
(AC119098) Rattus norvegicus clone CH230-183H24, WORKING DRA... 44 7.0 1
(AC117852) Rattus norvegicus clone CH230-149B22, *** SEQUENC... 44 7.0 1
(AC115510) Rattus norvegicus clone CH230-383C9, *** SEQUENCI... 44 7.0 1
(AC112086) Rattus norvegicus clone CH230-332D11, *** SEQUENC... 44 7.0 1
(AC112013) Rattus norvegicus clone CH230-158O13, WORKING DRA... 44 7.0 1
(AC111892) Rattus norvegicus clone CH230-52J14, *** SEQUENCI... 44 7.0 1
(AC111721) Rattus norvegicus clone CH230-63I18, *** SEQUENCI... 44 7.0 1
(AC107599) Rattus norvegicus clone CH230-92G12, *** SEQUENCI... 44 7.0 1
(AC106362) Rattus norvegicus clone CH230-119P18, *** SEQUENC... 44 7.0 1
(AC105834) Rattus norvegicus clone CH230-46C16, *** SEQUENCI... 44 7.0 1
(AC103082) Rattus norvegicus clone CH230-227E4, *** SEQUENCI... 44 7.0 1
(AC101393) Mus musculus clone RP23-119F11, LOW-PASS SEQUENCE... 44 7.0 1
(AC095373) Rattus norvegicus clone CH230-1P12, *** SEQUENCIN... 44 7.0 1
(FP102170) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 44 7.0 1
(FP101911) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 44 7.0 1
(DQ913817) Capsicum frutescens clone PEPBAC92, *** SEQUENCIN... 44 7.0 1
(DQ913815) Capsicum frutescens clone PEPBAC69, *** SEQUENCIN... 44 7.0 1
(CU929347) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 44 7.0 1
(CU928339) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 7.0 1
(AC094358) Rattus norvegicus clone CH230-3C15, *** SEQUENCIN... 44 7.0 1
(AC093999) Rattus norvegicus clone CH230-53K3, *** SEQUENCIN... 44 7.0 1
(CU207244) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 44 7.0 1
(CU074401) Zebrafish DNA sequence *** SEQUENCING CANCELLED *... 44 7.0 1
(CU012053) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 44 7.0 1
(CT025942) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 44 7.0 1
(CT025865) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 44 7.0 1
(CT005264) Leishmania major chromosome 25 strain Friedlin, c... 44 7.0 1
(CR940353) Theileria annulata genomic DNA chromosome 4. 44 7.0 1
(CR940352) Theileria annulata genomic DNA chromosome 3. 44 7.0 1
(BX572643) Mouse DNA sequence *** SEQUENCING CANCELLED *** f... 44 7.0 1
(AY657022) Mus musculus chromosome 6 clone GA_x54KRFPKN04:95... 44 7.0 1
(AL713872) Mouse DNA sequence *** SEQUENCING IN PROGRESS ***... 44 7.0 1
(AL591111) Human DNA sequence *** SEQUENCING IN PROGRESS ***... 44 7.0 1
(AC231303) Tupaia belangeri clone CH275-380D3, WORKING DRAFT... 44 7.0 1
(AC220065) Pongo abelii chromosome UNKNOWN clone CH276-251N1... 44 7.0 1
(AC215981) Loxodonta africana clone VMRC15-164N1, WORKING DR... 44 7.0 1
(AC202150) Zea mays chromosome 1 clone ZMMBBb-320G12; ZMMBBb... 44 7.0 1
(AC201638) Strongylocentrotus purpuratus clone R3-1117G20, W... 44 7.0 1
(AC201494) Strongylocentrotus purpuratus clone R3-3067E23, W... 44 7.0 1
(AC201246) Strongylocentrotus purpuratus clone R3-15L22, WOR... 44 7.0 1
(AC201214) Strongylocentrotus purpuratus clone R3-15E14, WOR... 44 7.0 1
(AC201168) Strongylocentrotus purpuratus clone R3-14K13, WOR... 44 7.0 1
(AC185386) Atelerix albiventris clone LB4-41C11, WORKING DRA... 44 7.0 1
(AC184639) Strongylocentrotus purpuratus clone R3-4015O2, WO... 44 7.0 1
(AC184606) Strongylocentrotus purpuratus clone R3-3084P17, W... 44 7.0 1
(AC184603) Strongylocentrotus purpuratus clone R3-3047A14, W... 44 7.0 1
(AC184578) Strongylocentrotus purpuratus clone R3-3067D12, W... 44 7.0 1
(AC184573) Strongylocentrotus purpuratus clone R3-3059E12, W... 44 7.0 1
(AC184534) Strongylocentrotus purpuratus clone R3-3082A19, W... 44 7.0 1
(AC184517) Strongylocentrotus purpuratus clone R3-3A13, WORK... 44 7.0 1
(AC184432) Strongylocentrotus purpuratus clone R3-3090B11, W... 44 7.0 1
(AC184375) Strongylocentrotus purpuratus clone R3-1016L22, W... 44 7.0 1
(AC183653) Aplysia californica clone XX-8158B7, *** SEQUENCI... 44 7.0 1
(AC181933) Strongylocentrotus purpuratus clone R3-1009F16, W... 44 7.0 1
(AC181849) Strongylocentrotus purpuratus clone R3-1022C16, W... 44 7.0 1
(AC181792) Strongylocentrotus purpuratus clone R3-1029J8, WO... 44 7.0 1
(AC181431) Strongylocentrotus purpuratus clone R3-1111P22, W... 44 7.0 1
(AC181410) Strongylocentrotus purpuratus clone R3-4P7, WORKI... 44 7.0 1
(AC181403) Strongylocentrotus purpuratus clone R3-4M17, WORK... 44 7.0 1
(AC181402) Strongylocentrotus purpuratus clone R3-1112K5, WO... 44 7.0 1
(AC181321) Strongylocentrotus purpuratus clone R3-115E19, WO... 44 7.0 1
(AC181315) Strongylocentrotus purpuratus clone R3-4017M11, W... 44 7.0 1
(AC181266) Strongylocentrotus purpuratus clone R3-4012L23, W... 44 7.0 1
(AC181067) Strongylocentrotus purpuratus clone R3-3050C3, WO... 44 7.0 1
(AC181046) Strongylocentrotus purpuratus clone R3-3050I13, W... 44 7.0 1
(AC181032) Strongylocentrotus purpuratus clone R3-3051A12, W... 44 7.0 1
(AC180925) Strongylocentrotus purpuratus clone R3-3064C21, W... 44 7.0 1
(AC180906) Strongylocentrotus purpuratus clone R3-3064I16, W... 44 7.0 1
(AC180847) Strongylocentrotus purpuratus clone R3-3025N11, W... 44 7.0 1
(AC180715) Strongylocentrotus purpuratus clone R3-3085G16, W... 44 7.0 1
(AC180671) Strongylocentrotus purpuratus clone R3-3019N20, W... 44 7.0 1
(AC180572) Strongylocentrotus purpuratus clone R3-3095G8, WO... 44 7.0 1
(AC180521) Strongylocentrotus purpuratus clone R3-3099C8, WO... 44 7.0 1
(AC180488) Strongylocentrotus purpuratus clone R3-3100A02, W... 44 7.0 1
(AC180389) Strongylocentrotus purpuratus clone R3-3009I5, WO... 44 7.0 1
(AC180356) Strongylocentrotus purpuratus clone R3-3118H1, WO... 44 7.0 1
(AC179925) Strongylocentrotus purpuratus clone R3-3029M09, W... 44 7.0 1
(AC179737) Strongylocentrotus purpuratus clone R3-1018I01, W... 44 7.0 1
(AC179647) Strongylocentrotus purpuratus clone R3-1024K12, W... 44 7.0 1
(AC179606) Strongylocentrotus purpuratus clone R3-1028P05, W... 44 7.0 1
(AC179493) Strongylocentrotus purpuratus clone R3-1035K7, WO... 44 7.0 1
(AC179468) Strongylocentrotus purpuratus clone R3-1036N6, WO... 44 7.0 1
(AC179463) Strongylocentrotus purpuratus clone R3-1036O20, W... 44 7.0 1
(AC179403) Strongylocentrotus purpuratus clone R3-1101C2, WO... 44 7.0 1
(AC179360) Strongylocentrotus purpuratus clone R3-59G20, WOR... 44 7.0 1
(AC179046) Strongylocentrotus purpuratus clone R3-4005E03, W... 44 7.0 1
(AC179012) Strongylocentrotus purpuratus clone R3-1108J03, W... 44 7.0 1
(AC178819) Strongylocentrotus purpuratus clone R3-22O15, WOR... 44 7.0 1
(AC178726) Strongylocentrotus purpuratus clone R3-12O15, WOR... 44 7.0 1
(AC178655) Strongylocentrotus purpuratus clone R3-11O22, WOR... 44 7.0 1
(AC178653) Strongylocentrotus purpuratus clone R3-3007J18, W... 44 7.0 1
(AC178521) Strongylocentrotus purpuratus clone R3-3032D12, W... 44 7.0 1
(AC178355) Strongylocentrotus purpuratus clone R3-3105M06, W... 44 7.0 1
(AC178344) Strongylocentrotus purpuratus clone R3-3105E13, W... 44 7.0 1
(AC178276) Strongylocentrotus purpuratus clone R3-3093E12, W... 44 7.0 1
(AC178225) Strongylocentrotus purpuratus clone R3-1116H1, WO... 44 7.0 1
(AC178110) Strongylocentrotus purpuratus clone R3-3073I23, W... 44 7.0 1

>(C92125) Dictyostelium discoideum slug cDNA, clone SSD121.
Length = 214

Score = 333 bits (168), Expect = 5e-87
Identities = 180/180 (100%)
Strand = Plus / Plus


Query: 516 gagtatggaaatattatcaaactcattcattagaatggttaattaaaaataatcattngc 575
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34 gagtatggaaatattatcaaactcattcattagaatggttaattaaaaataatcattngc 93


Query: 576 aattatttaaatatcgtttaaaacgtggtgattntatctcattcaatgnacaatcattta 635
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 94 aattatttaaatatcgtttaaaacgtggtgattntatctcattcaatgnacaatcattta 153


Query: 636 aacttattcataaattatttgatcaaattnaattatatgaagaaaaagatgaaaaagaaa 695
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 154 aacttattcataaattatttgatcaaattnaattatatgaagaaaaagatgaaaaagaaa 213

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 102105510
Number of Hits to DB: 710,185,134
Number of extensions: 49143035
Number of successful extensions: 4699320
Number of sequences better than 10.0: 748
Length of query: 695
Length of database: 101,790,757,118
Length adjustment: 24
Effective length of query: 671
Effective length of database: 99,340,224,878
Effective search space: 66657290893138
Effective search space used: 66657290893138
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)

protein update 2009. 7.31
Homology vs Protein
Query= Contig-U04800-1 (Contig-U04800-1Q) /CSM_Contig/Contig-U04800-1Q.Seq.d
(695 letters)

Database: nrp_A
3,268,448 sequences; 1,061,185,681 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

AC116986_26(AC116986|pid:none) Dictyostelium discoideum chromoso... 36 1.3
AC115683_2(AC115683|pid:none) Dictyostelium discoideum chromosom... 35 2.9
AF102575_1(AF102575|pid:none) Dictyostelium discoideum cell surf... 34 4.9
AC116977_3(AC116977|pid:none) Dictyostelium discoideum chromosom... 33 6.4
(O96668) RecName: Full=Defective in tip formation protein A; Alt... 33 6.4

>AC116986_26(AC116986|pid:none) Dictyostelium discoideum chromosome
2 map 2234041-2567370 strain AX4, complete sequence.
Length = 1118

Score = 35.8 bits (81), Expect = 1.3
Identities = 27/96 (28%), Positives = 45/96 (46%)
Frame = +2

Query: 383 NDELFFRMWKDKDISQIIWKCVKIRSDLXXXXXXXXXXXXXXXXRVWKYYQTHSLEWLIK 562
N+ LF++++KDK + I+ + I +++ WKY + S+EW+I
Sbjct: 11 NERLFWKVFKDKFLFNYIFNQM-ITTEIIYKDEKKYYVGNRIQ---WKYIK--SIEWMIA 64

Query: 563 NNHXQLFKYRLKRGDXISFNXQSFKLIHKLFDQIXL 670
NN LFK +LK I + S ++ K I L
Sbjct: 65 NNQITLFKDKLKSNQYIIVDYFSLEIFIKECKDIEL 100

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3268448
Number of Hits to DB: 510,063,352
Number of extensions: 5700372
Number of successful extensions: 12126
Number of sequences better than 10.0: 5
Number of HSP's gapped: 12124
Number of HSP's successfully gapped: 5
Length of query: 231
Length of database: 1,061,185,681
Length adjustment: 124
Effective length of query: 107
Effective length of database: 655,898,129
Effective search space: 70181099803
Effective search space used: 70181099803
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 31 (16.5 bits)

PSORT

psg: 0.57 gvh: 0.08 alm: 0.58 top: 0.53 tms: 0.00 mit: 0.22 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.40 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

60.0 %: nuclear
28.0 %: cytoplasmic
8.0 %: mitochondrial
4.0 %: cytoskeletal

>> prediction for Contig-U04800-1 is nuc

VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 1
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0