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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U00078-1
Contig ID Contig-U00078-1
Contig update 2001. 8.29
Contig sequence 
>Contig-U00078-1 (Contig-U00078-1Q) /CSM_Contig/Contig-U00078-1Q.Seq.d
AATAATAATAATAATAATATGAATAATAATATGAATAATAATATGAATAA
TATGAATAACATTAATAACAATAGTAATATTAGTAGATTCGAACATCAAA
ATAACAGAACATCTTCACCATTTGAAAATAATAGTAACAACAACAATAAT
AACAATAACAATAATAATAATAATATCAACTATAATAATATTGGACAAAG
AGCACTTTCACCACAATCATCACAACATAAAGATAGAAGAGAAATAATAT
TAGATGAAGAATCTGATATTAATGAAAGATCAAAAACAAGATCACCATCA
ATTGTTAAAGAAGCTGAAGAAAAGAGAGAAACTGTGATTGTAGATAAGGA
AAGATCACCAACTCCTATTATTACAGAAAAACCAGATGAAAAACAAGTTG
AGAAGGTTACCGATAAAGAATCATCTTTAGTTGAAAAAGTTGATAAAGAA
AATGAAAAAGAATCACCATCATCGTCATCATCATCAAAAGAAATCGAAAA
AGAAACCGAAAAAGAAAAAGAAAAAGAGAAAGAAAAAGAGAAAGAAGTGG
AAAAAGAGGTTGAAAAAGAGATTGAAAATGATAAAGAAAAAGAAAAAGAG
AAAGAAGTGGAAAAAGATGTTGAAGAAAATAAATCTGTTGAAAAATCAAG
TGAAAAACCAGTTGAAAAGGAATCCACAACTACTACAACTAATGATGAGG
ATGAAGAA----------CACCAACTACTACCACCACCACCACCACTAAC
ACCACAACTGTAGAACCAACACACAAAGACAAAGAGTCATCAAAAAAATG
ATGATACTACTACTACTACCACCACCACCACTACAAAATCAGCCAAATCT
CCAAACTCTTCACCAACTAGATCTGATGAAGTTGTTGAACCACATCAAGA
TGCCTCACAAGAGGAAATCAATAAAAGAAAATTAGAAGATGATATCACTT
CAACTCCAAGTAAAAGATTAAAACCAGATTCAACTCCTTCCTCTGCAACA
ACTGCTTCAACTCCATCTGAACAACCTGAATCACCACTAAAGAAAGAAAA
TCCAGTTGGGGAAACTTTATCACCAGAAATTAAAGATTCAAAATCATCTT
CATCTTCTTCATCCTCATCATCATCATCAACTAATACTGGCAGTAGCAGT
ACCAATAGTTCAGCTAAAAATGAACGTGATAGAGATAGAGAAAGAGAAAG
AGAACGTGAAAGGGATAGAGAAAGAGAGAGAGAAAGAGAAAGAGAGAGAG
AAAGAGAACGTGAAAAAAATAAACAACCAACAAGGGCTCCAATTAAACCT
TCATCTCGTAAACTCGAAAGATAAAAATAAAAAAAATAAT
Gap gap included
Contig length 1330
Chromosome number (1..6, M) 1
Chromosome length 4919822
Start point 3017462
End point 3016131
Strand (PLUS/MINUS) MINUS
Number of clones 8
Number of EST 10
Link to clone list U00078
List of clone(s) 

est1=SLI432Z,1,510
est2=AFH467F,31,658
est3=AFB119F,80,709
est4=SLJ576Z,306,595
est5=SLF635Z,317,686
est6=AFH467Z,710,1162
est7=AFB119Z,722,1304
est8=VSA229E,863,1332
est9=SLE331E,948,1332
est10=SLK147Z,1054,1331
Translated Amino Acid sequence 
NNNNNNMNNNMNNNMNNMNNINNNSNISRFEHQNNRTSSPFENNSNNNNNNNNNNNNNIN
YNNIGQRALSPQSSQHKDRREIILDEESDINERSKTRSPSIVKEAEEKRETVIVDKERSP
TPIITEKPDEKQVEKVTDKESSLVEKVDKENEKESPSSSSSSKEIEKETEKEKEKEKEKE
KEVEKEVEKEIENDKEKEKEKEVEKDVEENKSVEKSSEKPVEKESTTTTTNDEDEE---

---PTTTTTTTTNTTTVEPTHKDKESSKK**yyyyyhhhhykisqisklftn*i**sc*t
tsrcltrgnq*kkirr*yhfnsk*kiktrfnsflcnncfnsi*tt*ittkerksswgnfi
trn*rfkiififfiliiiin*ywq*qyq*fs*k*t**r*rkrkrt*kg*rkrerkrkrer
krt*kk*ttnkgsn*tfis*trkikikki
Translated Amino Acid sequence (All Frames) 
Frame A:
NNNNNNMNNNMNNNMNNMNNINNNSNISRFEHQNNRTSSPFENNSNNNNNNNNNNNNNIN
YNNIGQRALSPQSSQHKDRREIILDEESDINERSKTRSPSIVKEAEEKRETVIVDKERSP
TPIITEKPDEKQVEKVTDKESSLVEKVDKENEKESPSSSSSSKEIEKETEKEKEKEKEKE
KEVEKEVEKEIENDKEKEKEKEVEKDVEENKSVEKSSEKPVEKESTTTTTNDEDEE---

---hqllpppppltpql*nqhtktkshqknddttttttttttksakspnssptrsdevve
phqdasqeeinkrkledditstpskrlkpdstpssattastpseqpesplkkenpvgetl
speikdsksssssssssssstntgssstnssaknerdrdrererererdrererererer
erereknkqptrapikpssrkler*k*kk*

Frame B:
iiiiii*iii*iii*ii*itlitivilvdsnikitehlhhlkiivtttiititiiiiist
iiildkehfhhnhhnikieek*y*mknlilmkdqkqdhhqllkklkkrekl*l*irkdhq
llllqknqmknklrrlpiknhl*lkklikkmkknhhhrhhhqkkskkkpkkkkkkrkkkr
kkwkkrlkkrlkmikkkkkrkkwkkmlkkinllknqvknqlkrnpqllqlmmrmk---

---tnyyhhhhh*hhncrtntqrqrvikkmmillllpppplqnqpnlqtlhqldlmklln
hikmphkrksiken*kmislqlqvkd*nqiqllplqqllqlhlnnlnhh*rkkiqlgkly
hqklkiqnhlhllhphhhhqlilavavpivqlkmnvieiekekenvkgiekerekekere
kenvkkinnqqglqlnlhlvnskdknkknn

Frame C:
*****ye**ye**ye*ye*h**q**y**irtsk*qnifti*k***qqq**q*q****yql
**ywtkstfttiitt*r*krnnir*ri*y**kiknkitinc*rs*rkerncdcr*gkitn
syyyrktr*kts*egyr*riifs*ks**rk*kritiiviiikrnrkrnrkrkrkrerkre
rsgkrg*krd*k**rkrkrersgkrc*rk*ic*kik*kts*kgihnyyn***g*r---

---PTTTTTTTTNTTTVEPTHKDKESSKK**yyyyyhhhhykisqisklftn*i**sc*t
tsrcltrgnq*kkirr*yhfnsk*kiktrfnsflcnncfnsi*tt*ittkerksswgnfi
trn*rfkiififfiliiiin*ywq*qyq*fs*k*t**r*rkrkrt*kg*rkrerkrkrer
krt*kk*ttnkgsn*tfis*trkikikki
own update 2004. 6.21
Homology vs CSM-cDNA 
Query= Contig-U00078-1 (Contig-U00078-1Q)
/CSM_Contig/Contig-U00078-1Q.Seq.d
         (1340 letters)

Database: CSM
           8402 sequences; 8,075,542 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U00078-1 (Contig-U00078-1Q) /CSM_Contig/Conti...   626  e-179
Contig-U11311-1 (Contig-U11311-1Q) /CSM_Contig/Conti...    66  2e-10
Contig-U11477-1 (Contig-U11477-1Q) /CSM_Contig/Conti...    52  2e-06
Contig-U03798-1 (Contig-U03798-1Q) /CSM_Contig/Conti...    52  2e-06
Contig-U03720-1 (Contig-U03720-1Q) /CSM_Contig/Conti...    52  2e-06
Contig-U11661-1 (Contig-U11661-1Q) /CSM_Contig/Conti...    50  9e-06
Contig-U08172-1 (Contig-U08172-1Q) /CSM_Contig/Conti...    50  9e-06
Contig-U12008-1 (Contig-U12008-1Q) /CSM_Contig/Conti...    48  4e-05
Contig-U13460-1 (Contig-U13460-1Q) /CSM_Contig/Conti...    46  1e-04
Contig-U12765-1 (Contig-U12765-1Q) /CSM_Contig/Conti...    46  1e-04

>Contig-U00078-1 (Contig-U00078-1Q) /CSM_Contig/Contig-U00078-1Q.Seq.d
          Length = 1340

 Score =  626 bits (316), Expect = e-179
 Identities = 330/337 (97%)
 Strand = Plus / Plus

                                                                        
Query: 756  aactgtagaaccaacacacaaagacaaagagtcatcnnnnnnntgatgatactactacta 815
            ||||||||||||||||||||||||||||||||||||       |||||||||||||||||
Sbjct: 756  aactgtagaaccaacacacaaagacaaagagtcatcaaaaaaatgatgatactactacta 815

                                                                        
Query: 816  ctaccaccaccaccactacaaaatcagccaaatctccaaactcttcaccaactagatctg 875
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 816  ctaccaccaccaccactacaaaatcagccaaatctccaaactcttcaccaactagatctg 875

                                                                        
Query: 876  atgaagttgttgaaccacatcaagatgcctcacaagaggaaatcaataaaagaaaattag 935
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 876  atgaagttgttgaaccacatcaagatgcctcacaagaggaaatcaataaaagaaaattag 935

                                                                        
Query: 936  aagatgatatcacttcaactccaagtaaaagattaaaaccagattcaactccttcctctg 995
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 936  aagatgatatcacttcaactccaagtaaaagattaaaaccagattcaactccttcctctg 995

                                                                        
Query: 996  caacaactgcttcaactccatctgaacaacctgaatcaccactaaagaaagaaaatccag 1055
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 996  caacaactgcttcaactccatctgaacaacctgaatcaccactaaagaaagaaaatccag 1055

                                                 
Query: 1056 ttggggaaactttatcaccagaaattaaagattcaaa 1092
            |||||||||||||||||||||||||||||||||||||
Sbjct: 1056 ttggggaaactttatcaccagaaattaaagattcaaa 1092


 Score =  505 bits (255), Expect = e-143
 Identities = 255/255 (100%)
 Strand = Plus / Plus

                                                                       
Query: 191 ttggacaaagagcactttcaccacaatcatcacaacataaagatagaagagaaataatat 250
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 191 ttggacaaagagcactttcaccacaatcatcacaacataaagatagaagagaaataatat 250

                                                                       
Query: 251 tagatgaagaatctgatattaatgaaagatcaaaaacaagatcaccatcaattgttaaag 310
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 tagatgaagaatctgatattaatgaaagatcaaaaacaagatcaccatcaattgttaaag 310

                                                                       
Query: 311 aagctgaagaaaagagagaaactgtgattgtagataaggaaagatcaccaactcctatta 370
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 aagctgaagaaaagagagaaactgtgattgtagataaggaaagatcaccaactcctatta 370

                                                                       
Query: 371 ttacagaaaaaccagatgaaaaacaagttgagaaggttaccgataaagaatcatctttag 430
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 ttacagaaaaaccagatgaaaaacaagttgagaaggttaccgataaagaatcatctttag 430

                          
Query: 431 ttgaaaaagttgata 445
           |||||||||||||||
Sbjct: 431 ttgaaaaagttgata 445


 Score =  105 bits (53), Expect = 2e-22
 Identities = 53/53 (100%)
 Strand = Plus / Plus

                                                                 
Query: 1270 taaacaaccaacaagggctccaattaaaccttcatctcgtaaactcgaaagat 1322
            |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1270 taaacaaccaacaagggctccaattaaaccttcatctcgtaaactcgaaagat 1322


 Score =  103 bits (52), Expect = 7e-22
 Identities = 52/52 (100%)
 Strand = Plus / Plus

                                                                
Query: 1130 actaatactggcagtagcagtaccaatagttcagctaaaaatgaacgtgata 1181
            ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1130 actaatactggcagtagcagtaccaatagttcagctaaaaatgaacgtgata 1181


 Score = 97.6 bits (49), Expect = 4e-20
 Identities = 49/49 (100%)
 Strand = Plus / Plus

                                                            
Query: 80  ttagtagattcgaacatcaaaataacagaacatcttcaccatttgaaaa 128
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80  ttagtagattcgaacatcaaaataacagaacatcttcaccatttgaaaa 128


 Score = 77.8 bits (39), Expect = 4e-14
 Identities = 39/39 (100%)
 Strand = Plus / Plus

                                                  
Query: 670 gaatccacaactactacaactaatgatgaggatgaagaa 708
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 670 gaatccacaactactacaactaatgatgaggatgaagaa 708


 Score = 42.1 bits (21), Expect = 0.002
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 809 actactactaccaccaccaccacta 833
           |||||||| ||||||||||||||||
Sbjct: 724 actactaccaccaccaccaccacta 748


 Score = 34.2 bits (17), Expect = 0.54
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                             
Query: 692  atgatgaggatgaagaa 708
            |||||||||||||||||
Sbjct: 1121 atgatgaggatgaagaa 1105


 Score = 30.2 bits (15), Expect = 8.4
 Identities = 21/23 (91%)
 Strand = Plus / Plus

                                  
Query: 806 actactactactaccaccaccac 828
           |||||||| || |||||||||||
Sbjct: 724 actactaccaccaccaccaccac 746


>Contig-U11311-1 (Contig-U11311-1Q) /CSM_Contig/Contig-U11311-1Q.Seq.d
          Length = 1408

 Score = 65.9 bits (33), Expect = 2e-10
 Identities = 33/33 (100%)
 Strand = Plus / Plus

                                             
Query: 805  tactactactactaccaccaccaccactacaaa 837
            |||||||||||||||||||||||||||||||||
Sbjct: 1341 tactactactactaccaccaccaccactacaaa 1373


 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                       
Query: 805  tactactactactaccaccaccaccac 831
            ||||||||||||||| |||||||||||
Sbjct: 1338 tactactactactactaccaccaccac 1364


>Contig-U11477-1 (Contig-U11477-1Q) /CSM_Contig/Contig-U11477-1Q.Seq.d
          Length = 4407

 Score = 52.0 bits (26), Expect = 2e-06
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                          
Query: 806  actactactactaccaccaccaccactaca 835
            ||||| ||||||||||||||||||||||||
Sbjct: 1190 actaccactactaccaccaccaccactaca 1219


  Database: CSM
    Posted date:  Jun 21, 2004 12:56 PM
  Number of letters in database: 8,075,542
  Number of sequences in database:  8402
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 17,995
Number of Sequences: 8402
Number of extensions: 17995
Number of successful extensions: 3656
Number of sequences better than 10.0: 551
length of query: 1340
length of database: 8,075,542
effective HSP length: 16
effective length of query: 1324
effective length of database: 7,941,110
effective search space: 10514029640
effective search space used: 10514029640
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2009. 4.14
Homology vs DNA 
Query= Contig-U00078-1 (Contig-U00078-1Q) /CSM_Contig/Contig-U00078-1Q.Seq.d
         (1340 letters)

Database: ddbj_A
           102,105,510 sequences; 101,790,757,118 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AB009080) Dictyostelium discoideum gene for TRFA, complete ...   583   0.0    7
(BJ340617) Dictyostelium discoideum cDNA clone:dda3e05, 3' e...   583   0.0    4
(BJ342956) Dictyostelium discoideum cDNA clone:dda15f18, 3' ...   583   e-179  3
(BJ325930) Dictyostelium discoideum cDNA clone:dda3e05, 5' e...   480   e-166  3
(AU053344) Dictyostelium discoideum slug cDNA, clone SLI432.      480   e-150  2
(BJ326173) Dictyostelium discoideum cDNA clone:dda15f18, 5' ...   480   e-150  2
(AU261368) Dictyostelium discoideum vegetative cDNA clone:VS...   414   e-149  3
(AU034788) Dictyostelium discoideum slug cDNA, clone SLE331.      270   e-106  3
(AU053734) Dictyostelium discoideum slug cDNA, clone SLJ576.      246   2e-60  1
(AU053077) Dictyostelium discoideum slug cDNA, clone SLF635.      224   7e-54  1
(AU053913) Dictyostelium discoideum slug cDNA, clone SLK147.      105   2e-43  3
(AU053607) Dictyostelium discoideum slug cDNA, clone SLJ221.       90   3e-13  1
(AC116977) Dictyostelium discoideum chromosome 2 map 5515173...    66   4e-06  1
(BJ406759) Dictyostelium discoideum cDNA clone:dds36h11, 3' ...    66   4e-06  1
(BJ406028) Dictyostelium discoideum cDNA clone:dds33l20, 3' ...    66   4e-06  1
(BJ405585) Dictyostelium discoideum cDNA clone:dds32n06, 3' ...    66   4e-06  1
(BJ403370) Dictyostelium discoideum cDNA clone:dds24m19, 3' ...    66   4e-06  1
(BJ356076) Dictyostelium discoideum cDNA clone:dda59m03, 3' ...    66   4e-06  1
(BJ350528) Dictyostelium discoideum cDNA clone:dda40l05, 3' ...    66   4e-06  1
(AC139595) Rattus norvegicus clone CH230-36J10, WORKING DRAF...    64   1e-05  1
(AC097100) Rattus norvegicus clone CH230-11K16, *** SEQUENCI...    64   1e-05  1
(BX537162) Zebrafish DNA sequence from clone DKEY-9A20 in li...    62   6e-05  1
(AL935062) Zebrafish DNA sequence from clone CH211-231F23 in...    62   6e-05  1
(CR376768) Zebrafish DNA sequence *** SEQUENCING CANCELLED *...    62   6e-05  1
(DE973523) Macropus eugenii DNA, BAC clone: MEB1-179I20_F, 5...    62   6e-05  1
(BX126388) Danio rerio genomic clone DKEY-77A17, genomic sur...    62   6e-05  1
(DH495425) Monosiga ovata DNA, fosmid clone: MOF-059G19, gen...    54   9e-05  2
(AY588380) Humulus lupulus clone HlCAG6 microsatellite seque...    52   2e-04  2
(CR751563) Zebrafish DNA sequence from clone CH211-203C10 in...    60   2e-04  1
(BX470221) Zebrafish DNA sequence from clone CH211-86K6 in l...    60   2e-04  1
(AC124471) Mus musculus BAC clone RP24-79D7 from 12, complet...    60   2e-04  1
(AC122789) Mus musculus chromosome 5, clone RP24-258A20, com...    60   2e-04  1
(AC007262) Homo sapiens chromosome 14 clone containing gene ...    60   2e-04  1
(AC128909) Rattus norvegicus clone CH230-321C12, WORKING DRA...    60   2e-04  1
(AC126591) Rattus norvegicus clone CH230-224C4, WORKING DRAF...    60   2e-04  1
(AC123400) Rattus norvegicus clone CH230-404I15, *** SEQUENC...    60   2e-04  1
(AC117048) Rattus norvegicus clone CH230-390M23, *** SEQUENC...    60   2e-04  1
(AC110402) Rattus norvegicus clone CH230-44K24, *** SEQUENCI...    60   2e-04  1
(AC104289) Rattus norvegicus clone CH230-124G1, WORKING DRAF...    60   2e-04  1
(AC098493) Rattus norvegicus clone CH230-20E13, WORKING DRAF...    60   2e-04  1
(AC096253) Rattus norvegicus clone CH230-88E1, *** SEQUENCIN...    60   2e-04  1
(CU466262) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    60   2e-04  1
(CU234161) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    60   2e-04  1
(CU041310) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    60   2e-04  1
(CR749744) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    60   2e-04  1
(AC225677) Macropus eugenii clone ME_KBa-72B1, WORKING DRAFT...    60   2e-04  1
(AC201508) Strongylocentrotus purpuratus clone R3-3082B23, W...    60   2e-04  1
(AC181907) Strongylocentrotus purpuratus clone R3-1012P21, W...    60   2e-04  1
(AC181164) Strongylocentrotus purpuratus clone R3-16B13, WOR...    60   2e-04  1
(AC180779) Strongylocentrotus purpuratus clone R3-3076A23, W...    60   2e-04  1
(AC180766) Strongylocentrotus purpuratus clone R3-3081H11, W...    60   2e-04  1
(AC180600) Strongylocentrotus purpuratus clone R3-3092L18, W...    60   2e-04  1
(AC179773) Strongylocentrotus purpuratus clone R3-1016E11, W...    60   2e-04  1
(AC179070) Strongylocentrotus purpuratus clone R3-4009E11, W...    60   2e-04  1
(AC178973) Strongylocentrotus purpuratus clone R3-3122B2, WO...    60   2e-04  1
(AC177640) Strongylocentrotus purpuratus clone R3-1020F19, W...    60   2e-04  1
(AC169191) Mus musculus chromosome 5 clone RP23-267N12 map 5...    60   2e-04  1
(DH495703) Monosiga ovata DNA, fosmid clone: MOF-059O17, gen...    60   2e-04  1
(DH476186) Monosiga ovata DNA, fosmid clone: MOF-025L19, gen...    60   2e-04  1
(CE727025) tigr-gss-dog-17000315265835 Dog Library Canis lup...    60   2e-04  1
(BZ134514) CH230-431L7.TJ CHORI-230 Segment 2 Rattus norvegi...    60   2e-04  1
(FG477641) 020916KALA012397HT (KALA) Dormant kiwifruit buds ...    60   2e-04  1
(FE808874) CCAG28261.b1 CCAG Petrolisthes cinctipes heart, g...    60   2e-04  1
(AC184611) Strongylocentrotus purpuratus clone R3-3085G2, WO...    54   7e-04  2
(DH491663) Monosiga ovata DNA, fosmid clone: MOF-052J07, gen...    46   0.001  3
(AC163331) Mus musculus chromosome 5, clone RP23-50G20, comp...    58   0.001  1
(AF006483) Phaffia rhodozyma glyceraldehyde-3-phosphate dehy...    58   0.001  1
(DJ402737) Methods and nucleic acids for analyses of colo re...    58   0.001  1
(DJ402665) Methods and nucleic acids for analyses of colo re...    58   0.001  1
(DJ060365) Method and nucleic acids for the improved treatme...    58   0.001  1
(CS124712) Sequence 398 from Patent WO2005059172.                  58   0.001  1
(AC161110) Mus musculus chromosome 5 clone wi1-1660F20 map 5...    58   0.001  1
(AC180029) Strongylocentrotus purpuratus clone R3-23N1, WORK...    58   0.001  1
(AC176559) Strongylocentrotus purpuratus clone R3-3076H3, WO...    58   0.001  1
(FG585637) TpNBL014264 Trichinella pseudospiralis new born l...    58   0.001  1
(EY297425) CAWX13358.fwd CAWX Helobdella robusta Primary Ear...    58   0.001  1
(GN009090) Sequence 1531 from Patent EP2014669.                    52   0.001  2
(ED053053) AUAC-aav81b03.b1 Ascaris suum whole genome shotgu...    46   0.001  2
(AL140705) Anopheles gambiae GSS T7 end of clone 02I12 of No...    54   0.001  2
(AC092762) Pan troglodytes clone RP43-108O4, WORKING DRAFT S...    54   0.002  3
(AC126624) Rattus norvegicus clone CH230-78D18, *** SEQUENCI...    44   0.003  2
(AC094661) Rattus norvegicus clone CH230-5C1, *** SEQUENCING...    44   0.003  2
(AC094927) Rattus norvegicus clone CH230-6B23, WORKING DRAFT...    44   0.003  2
(AC175984) Strongylocentrotus purpuratus clone R3-17H6, WORK...    44   0.003  2
(AC134094) Rattus norvegicus clone CH230-34B17, *** SEQUENCI...    54   0.003  4
(AC161122) Pan troglodytes BAC clone CH251-727J16 from chrom...    54   0.003  3
(AB253466) Chlamys farreri DNA, microsatellite sequence, clo...    54   0.003  2
(CT027824) Zebrafish DNA sequence from clone DKEY-232N5 in l...    56   0.004  1
(CR925795) Zebrafish DNA sequence from clone DKEY-25C9 in li...    56   0.004  1
(BX942831) Zebrafish DNA sequence from clone CH211-62B4 in l...    56   0.004  1
(BX510656) Zebrafish DNA sequence from clone CH211-132N7 in ...    56   0.004  1
(AL713974) Mouse DNA sequence from clone RP23-135I10 on chro...    56   0.004  1
(FM992688) Candida dubliniensis CD36 chromosome 1, complete ...    56   0.004  1
(AF151111) Dictyostelium discoideum cheater ChtA (chtA) gene...    56   0.004  1
(AC117076) Dictyostelium discoideum chromosome 2 map 3323568...    56   0.004  1
(AC116070) Rattus norvegicus clone CH230-199E9, WORKING DRAF...    56   0.004  1
(AC111495) Rattus norvegicus clone CH230-113E4, *** SEQUENCI...    56   0.004  1
(AC106353) Rattus norvegicus clone CH230-91D20, WORKING DRAF...    56   0.004  1
(CU463070) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    56   0.004  1
(AC201528) Strongylocentrotus purpuratus clone R3-3090B7, WO...    56   0.004  1
(AC183565) Canis lupus familiaris chromosome X clone XX-329D...    56   0.004  1
(AC181543) Strongylocentrotus purpuratus clone R3-7E19, WORK...    56   0.004  1
(AC180966) Strongylocentrotus purpuratus clone R3-3058P16, W...    56   0.004  1
(AC178867) Strongylocentrotus purpuratus clone R3-26P12, WOR...    56   0.004  1
(AC177739) Strongylocentrotus purpuratus clone R3-1008H3, WO...    56   0.004  1
(AC177079) Strongylocentrotus purpuratus clone R3-4004M10, W...    56   0.004  1
(BX010971) Single read from an extremity of a full-length cD...    56   0.004  1
(DH503802) Monosiga ovata DNA, fosmid clone: MOF-073N16, gen...    56   0.004  1
(DH491176) Monosiga ovata DNA, fosmid clone: MOF-051L13, gen...    56   0.004  1
(DH479879) Monosiga ovata DNA, fosmid clone: MOF-032E11, gen...    56   0.004  1
(DE917976) Macropus eugenii DNA, BAC clone: MEB1-103P18_F, 5...    56   0.004  1
(DE863075) Macropus eugenii DNA, BAC clone: MEB1-030F15_R, 3...    56   0.004  1
(CZ290326) cp69c11.f Candida parapsilosis Random Genomic Lib...    56   0.004  1
(EG601801) EMBRYOF101109N19 POSSUM_01-POSSUM-C-EMBRYO-2KB Tr...    56   0.004  1
(EE511472) 25RDBNM_UP_050_A09_05MAR2004_079 Brassica napus 2...    56   0.004  1
(EE510220) 25RDBNM_UP_031_F04_02MAR2004_022 Brassica napus 2...    56   0.004  1
(EE440878) 6ETGS6H_UP_021_E09_04FEB2005_071 Brassica napus 6...    56   0.004  1
(EE437748) 64ETCOT5_T3_007_G06_12JAN2005_036 Brassica napus ...    56   0.004  1
(EE437521) 64ETCOT5_T3_005_C05_12JAN2005_043 Brassica napus ...    56   0.004  1
(EE423359) 60ACAB48_UP_015_B01_30SEP2004_013 Brassica napus ...    56   0.004  1
(EE422310) 60ACAB48_UP_002_E01_29SEP2004_007 Brassica napus ...    56   0.004  1
(EE419825) 59ACAB6_UP_004_D07_08JUL2004_057 Brassica napus 5...    56   0.004  1
(EE419753) 59ACAB6_UP_003_F04_08JUL2004_022 Brassica napus 5...    56   0.004  1
(EE418474) 58ACPE48_UP_018_D12_21SEP2004_090 Brassica napus ...    56   0.004  1
(EE416829) 57ACPE6_UP_028_F05_20SEP2004_037 Brassica napus D...    56   0.004  1
(EE416401) 57ACPE6_UP_023_G10_21SEP2004_068 Brassica napus D...    56   0.004  1
(EE413548) 56ACAC48_UP_018_C08_22DEC2003_060 Brassica napus ...    56   0.004  1
(EE413233) 56ACAC48_UP_014_G07_18DEC2004_051 Brassica napus ...    56   0.004  1
(EE413009) 56ACAC48_UP_012_B07_18DEC2004_061 Brassica napus ...    56   0.004  1
(EE412611) 56ACAC48_UP_005_A09_30AUG2004_079 Brassica napus ...    56   0.004  1
(EE410920) 55ACACPE_UP_015_E08_15DEC2004_056 Brassica napus ...    56   0.004  1
(EE410665) 55ACACPE_UP_012_D11_15DEC2004_089 Brassica napus ...    56   0.004  1
(EE409661) 21ACACMS_UP_030_G05_06NOV2004_035 Brassica napus ...    56   0.004  1
(EE409478) 21ACACMS_UP_028_F11_06NOV2004_085 Brassica napus ...    56   0.004  1
(EE409100) 21ACACMS_UP_024_D12_06NOV2004_090 Brassica napus ...    56   0.004  1
(EE408615) 21ACACMS_UP_018_G09_06NOV2004_067 Brassica napus ...    56   0.004  1
(EE408557) 21ACACMS_UP_018_B06_06NOV2004_046 Brassica napus ...    56   0.004  1
(EE407332) 20ACACDS_UP_022_H06_05NOV2004_034 Brassica napus ...    56   0.004  1
(EE407276) 20ACACDS_UP_022_B11_05NOV2004_093 Brassica napus ...    56   0.004  1
(EE407179) 20ACACDS_UP_021_A12_05NOV2004_096 Brassica napus ...    56   0.004  1
(EE406612) 20ACACDS_UP_014_D08_04NOV2004_058 Brassica napus ...    56   0.004  1
(EE406523) 20ACACDS_UP_013_D10_04NOV2004_074 Brassica napus ...    56   0.004  1
(EE406224) 17ACDHMS_UP_029_G10_28OCT2004_068 Brassica napus ...    56   0.004  1
(EE406201) 17ACDHMS_UP_029_E10_28OCT2004_072 Brassica napus ...    56   0.004  1
(EE404823) 17ACDHMS_UP_014_D10_27OCT2004_074 Brassica napus ...    56   0.004  1
(EE404264) 17ACDHMS_UP_008_C01_28JAN2004_011 Brassica napus ...    56   0.004  1
(EE403831) 16ACDHDS_UP_027_G01_26OCT2004_003 Brassica napus ...    56   0.004  1
(EE402171) 15ACDHYS_UP_027_C01_15OCT2004_011 Brassica napus ...    56   0.004  1
(EE402140) 15ACDHYS_UP_026_G12_14OCT2004_084 Brassica napus ...    56   0.004  1
(EE401070) 15ACDHYS_UP_010_F02_08MAR2004_006 Brassica napus ...    56   0.004  1
(EE400618) 15ACDHYS_UP_005_F10_05MAR2004_070 Brassica napus ...    56   0.004  1
(EE400359) 15ACDHYS_UP_002_H04_05MAR2004_018 Brassica napus ...    56   0.004  1
(DY008852) 19ACACYS_UP_030_G08_31OCT2004_052 Brassica napus ...    56   0.004  1
(DY008596) 19ACACYS_UP_027_H08_29OCT2004_050 Brassica napus ...    56   0.004  1
(DY008584) 19ACACYS_UP_027_G07_29OCT2004_051 Brassica napus ...    56   0.004  1
(DY008312) 19ACACYS_UP_024_G01_29OCT2004_003 Brassica napus ...    56   0.004  1
(DY004154) 19ACACYS_UP_005_D10_29JAN2004_074 Brassica napus ...    56   0.004  1
(DY004138) 19ACACYS_UP_005_C05_29JAN2004_043 Brassica napus ...    56   0.004  1
(DY003863) 19ACACYS_UP_002_B09_29JAN2004_077 Brassica napus ...    56   0.004  1
(DY003755) 54ACDHPE_UP_030_F10_09NOV2004_070 Brassica napus ...    56   0.004  1
(DY003704) 54ACDHPE_UP_030_B05_09NOV2004_045 Brassica napus ...    56   0.004  1
(DY003682) 54ACDHPE_UP_029_H06_09NOV2004_034 Brassica napus ...    56   0.004  1
(DY002792) 54ACDHPE_UP_019_F12_10NOV2004_086 Brassica napus ...    56   0.004  1
(DY002484) 54ACDHPE_UP_016_B08_08NOV2004_062 Brassica napus ...    56   0.004  1
(DY002378) 54ACDHPE_UP_015_A03_10NOV2004_031 Brassica napus ...    56   0.004  1
(DY001486) 54ACDHPE_UP_004_E06_24AUG2004_040 Brassica napus ...    56   0.004  1
(CX279247) 21ACACMS_UP_006_A04_08MAR2004_032 Brassica napus ...    56   0.004  1
(CX279003) 21ACACMS_UP_003_C02_08MAR2004_012 Brassica napus ...    56   0.004  1
(CX278814) 21ACACMS_UP_001_A01_08MAR2004_015 Brassica napus ...    56   0.004  1
(CX278744) 20ACACDS_UP_010_B05_10MAR2004_045 Brassica napus ...    56   0.004  1
(CX278729) 20ACACDS_UP_010_A02_10MAR2004_016 Brassica napus ...    56   0.004  1
(CX278525) 20ACACDS_UP_007_F05_09MAR2004_037 Brassica napus ...    56   0.004  1
(CX278211) 20ACACDS_UP_004_B09_08MAR2004_077 Brassica napus ...    56   0.004  1
(CX274708) EX20LIB4_UP_023_D10_05FEB2004_074 Brassica napus ...    56   0.004  1
(CN826180) EL1341 Brassica embryo library (EL) Brassica napu...    56   0.004  1
(CN726634) 3ETMS_UP_006_D07_10JUN2003_029 Brassica napus 3ET...    56   0.004  1
(CD833297) BN40.066L04F011228 BN40 Brassica napus cDNA clone...    56   0.004  1
(CD833084) BN40.065O07F011229 BN40 Brassica napus cDNA clone...    56   0.004  1
(CD832157) BN40.062D19F011227 BN40 Brassica napus cDNA clone...    56   0.004  1
(CD832056) BN40.061N02F011227 BN40 Brassica napus cDNA clone...    56   0.004  1
(CD830946) BN40.047G02F011228 BN40 Brassica napus cDNA clone...    56   0.004  1
(CD829691) BN40.042P08F011226 BN40 Brassica napus cDNA clone...    56   0.004  1
(CD829152) BN40.041D20F011207 BN40 Brassica napus cDNA clone...    56   0.004  1
(CD828520) BN25.071A07F020325 BN25 Brassica napus cDNA clone...    56   0.004  1
(CD828080) BN25.069K20F020124 BN25 Brassica napus cDNA clone...    56   0.004  1
(CD825561) BN25.061C01F011129 BN25 Brassica napus cDNA clone...    56   0.004  1
(CD824298) BN25.053B18F020328 BN25 Brassica napus cDNA clone...    56   0.004  1
(CD818475) BN20.045J08F011221 BN20 Brassica napus cDNA clone...    56   0.004  1
(GO063680) EST_ssal_rgh_1083228 ssalrgh mixed_tissue full-le...    56   0.004  1
(FK252077) BnSS1_0636 Suppression subtractive hybridization ...    56   0.004  1
(FK251932) BnSS1_0491 Suppression subtractive hybridization ...    56   0.004  1
(FK251636) BnSS1_0194 Suppression subtractive hybridization ...    56   0.004  1
(FK251591) BnSS1_0149 Suppression subtractive hybridization ...    56   0.004  1
(FK251588) BnSS1_0146 Suppression subtractive hybridization ...    56   0.004  1
(FK251427) BnLS0458 Suppression subtractive hybridization cD...    56   0.004  1
(FK251394) BnLS0425 Suppression subtractive hybridization cD...    56   0.004  1
(FG573394) BN24DYSC_UP_030_H10_4FEB2008_066 BN24DYSC Brassic...    56   0.004  1
(FG286198) 1108770714057 New World Screwworm Egg 9261 ESTs C...    56   0.004  1
(EY360852) CAWZ740.fwd CAWZ Helobdella robusta Primary Late ...    56   0.004  1
(EX104343) BR090633 seed and seedling cDNA library KFSD Bras...    56   0.004  1
(EX102520) BR088810 seed and seedling cDNA library KFSD Bras...    56   0.004  1
(EX102418) BR088708 seed and seedling cDNA library KFSD Bras...    56   0.004  1
(EV168817) 0146493 Brassica napus Etiolated seedlings (Uni-Z...    56   0.004  1
(ES969961) EX20LIB4_UP_015_C09_30JAN2004_075 Brassica napus ...    56   0.004  1
(ES917083) 24RDBNH_UP_107_C12_9MAR2006_092 Brassica napus 24...    56   0.004  1
(AC184462) Strongylocentrotus purpuratus clone R3-37L23, WOR...    54   0.004  2
(AZ198926) SP_1038_B1_G06_SP6E Strongylocentrotus purpuratus...    48   0.005  2
(AC097409) Rattus norvegicus clone CH230-78I13, WORKING DRAF...    42   0.010  2
(AC105565) Rattus norvegicus clone CH230-248P14, WORKING DRA...    42   0.010  2
(AC105585) Rattus norvegicus clone CH230-238F23, *** SEQUENC...    42   0.010  2
(AC133186) Mus musculus BAC clone RP23-320D8 from chromosome...    38   0.010  2
(AC168442) Strongylocentrotus purpuratus clone R3-39D21, WOR...    38   0.010  2
(DH489849) Monosiga ovata DNA, fosmid clone: MOF-049G18, gen...    46   0.012  2
(DH468482) Monosiga ovata DNA, fosmid clone: MOF-012D08, gen...    38   0.013  3
(CU694209) Zebrafish DNA sequence from clone CH73-17D15 in l...    54   0.014  1
(CU539059) Zebrafish DNA sequence from clone CH1073-386G6 in...    54   0.014  1
(CR848744) Zebrafish DNA sequence from clone DKEY-165G20 in ...    54   0.014  1
(CR753897) Zebrafish DNA sequence from clone CH211-219A15 in...    54   0.014  1
(CR392347) Zebrafish DNA sequence from clone DKEY-37G12 in l...    54   0.014  1
(CR376850) Zebrafish DNA sequence from clone DKEY-246K9 in l...    54   0.014  1
(BX897691) Zebrafish DNA sequence from clone DKEY-168E3 in l...    54   0.014  1
(BX470077) Zebrafish DNA sequence from clone CH211-136P17 in...    54   0.014  1
(BX323881) Zebrafish DNA sequence from clone CH211-274G13 in...    54   0.014  1
(BX247899) Zebrafish DNA sequence from clone CH211-229B6 in ...    54   0.014  1
(AL954187) Zebrafish DNA sequence from clone CH211-69P5 in l...    54   0.014  1
(AL935329) Zebrafish DNA sequence from clone CH211-253P2 in ...    54   0.014  1
(G08582) human STS CHLC.ACT3E08.P10338 clone ACT3E08, sequen...    54   0.014  1
(AU048002) Rattus norvegicus, OTSUKA clone, 519c06, microsat...    54   0.014  1
(CT030195) Mouse DNA sequence from clone RP23-191J8 on chrom...    54   0.014  1
(CT030142) Mouse DNA sequence from clone RP23-422H22 on chro...    54   0.014  1
(AL954351) Mouse DNA sequence from clone RP23-109H4 on chrom...    54   0.014  1
(AL928566) Mouse DNA sequence from clone RP23-311A20 on chro...    54   0.014  1
(AL833806) Mouse DNA sequence from clone RP23-425H11 on chro...    54   0.014  1
(AL773600) Mouse DNA sequence from clone RP23-79B20 on chrom...    54   0.014  1
(AL672179) Mouse DNA sequence from clone RP23-468C6 on chrom...    54   0.014  1
(AL589902) Mouse DNA sequence from clone RP23-108D12 on chro...    54   0.014  1
(AF287263) Mus musculus ATP-binding cassette 1, sub-family A...    54   0.014  1
(AC165408) Mus musculus chromosome 18, clone wi1-2909J7, com...    54   0.014  1
(AC165349) Mus musculus BAC clone RP23-212M22 from chromosom...    54   0.014  1
(AC162927) Mus musculus BAC clone RP23-269E12 from chromosom...    54   0.014  1
(AC162298) Mus musculus chromosome 1, clone RP24-285P15, com...    54   0.014  1
(AC160467) Mus musculus chromosome 1, clone RP23-382C4, comp...    54   0.014  1
(AC158950) Mus musculus chromosome 1, clone RP24-215K13, com...    54   0.014  1
(AC158630) Mus musculus 10 BAC RP23-440F7 (Roswell Park Canc...    54   0.014  1
(AC157548) Mus musculus chromosome 18, clone RP24-310H1, com...    54   0.014  1
(AC154842) Mus musculus BAC clone RP23-55C11 from chromosome...    54   0.014  1
(AC154704) Mus musculus BAC clone RP24-349I24 from chromosom...    54   0.014  1
(AC154471) Mus musculus BAC clone RP23-195D3 from chromosome...    54   0.014  1
(AC154452) Mus musculus BAC clone RP24-172H10 from 14, compl...    54   0.014  1
(AC149603) Mus musculus BAC clone RP23-479L9 from 7, complet...    54   0.014  1
(AC147108) Mus musculus BAC clone RP24-70D19 from 13, comple...    54   0.014  1
(AC141896) Mus musculus BAC clone RP23-238B2 from 5, complet...    54   0.014  1
(AC141870) Mus musculus BAC clone RP24-359E19 from chromosom...    54   0.014  1
(AC140477) Mus musculus BAC clone RP24-132G6 from chromosome...    54   0.014  1
(AC133093) Mus musculus BAC clone RP23-442I18 from chromosom...    54   0.014  1
(AC132874) Mus musculus chromosome 7, clone RP24-215K5, comp...    54   0.014  1
(AC132366) Mus musculus BAC clone RP23-461N12 from chromosom...    54   0.014  1
(AC131172) Rattus norvegicus 5 BAC CH230-12K15 (Children's H...    54   0.014  1
(AC130711) Mus musculus BAC clone RP23-22M24 from chromosome...    54   0.014  1
(AC125532) Mus musculus BAC clone RP23-447C2 from 10, comple...    54   0.014  1
(AC124777) Mus musculus BAC clone RP23-90I17 from chromosome...    54   0.014  1
(AC123044) Mus musculus BAC clone RP24-548B7 from chromosome...    54   0.014  1
(AC123034) Mus musculus BAC clone RP24-484E17 from chromosom...    54   0.014  1
(AC120787) Mus musculus chromosome 15, clone RP24-180L12, co...    54   0.014  1
(AC118018) Mus musculus chromosome 17, clone RP23-458D20, co...    54   0.014  1
(AC115742) Mus musculus chromosome 7, clone RP23-477E13, com...    54   0.014  1
(AC114916) Mus musculus BAC clone RP23-68E10 from 15, comple...    54   0.014  1
(AC110551) Mus musculus chromosome 7, clone RP23-245P16, com...    54   0.014  1
(AC107703) Mus musculus, clone RP23-472H1, complete sequence.      54   0.014  1
(AC102657) Mus musculus chromosome 10, clone RP23-15N10, com...    54   0.014  1
(AC102643) Mus musculus chromosome 8, clone RP23-304B22, com...    54   0.014  1
(AC102166) Mus musculus chromosome 1, clone RP23-447B15, com...    54   0.014  1
(AC102099) Mus musculus chromosome 5, clone RP23-52A2, compl...    54   0.014  1
(AC083816) Mus musculus X BAC RP23-330G24 (Roswell Park Canc...    54   0.014  1
(AC079831) Mus musculus strain C57BL/6J chromosome 16 clone ...    54   0.014  1
(AC079817) Mus musculus strain C57BL/6J clone rp23-247i11 ma...    54   0.014  1
(AC008020) Mus musculus strain 129S6/SvEvTac chromosome 16 c...    54   0.014  1
(AC201952) Rhesus Macaque  BAC CH250-240E16 () complete sequ...    54   0.014  1
(AC187625) Pan troglodytes BAC clone CH251-423K24 from chrom...    54   0.014  1
(AC187497) Rhesus macaque BAC clone CH250-65H12 from chromos...    54   0.014  1
(AC183665) Pan troglodytes BAC clone CH251-655J2 from chromo...    54   0.014  1
(EU094834) Humulus lupulus clone ACC2-O9-6 microsatellite se...    54   0.014  1
(AP007151) Aspergillus oryzae RIB40 genomic DNA, SC005.            54   0.014  1
(AP006852) Candida albicans genomic DNA, chromosome 7, compl...    54   0.014  1
(AM461145) Vitis vinifera contig VV78X006294.11, whole genom...    54   0.014  1
(AM270138) Aspergillus niger contig An07c0210, complete genome.    54   0.014  1
(AF312895) Phytophthora cinnamomi clone f21 microsatellite s...    54   0.014  1
(EA265171) Sequence 185 from patent US 7241613.                    54   0.014  1
(DJ386645) Diagnosis of Diseases Associated with Metastasis.       54   0.014  1
(DD139820) Sulfatases and methods of use thereof.                  54   0.014  1
(AX573202) Sequence 24 from Patent WO02059327.                     54   0.014  1
(AX489631) Sequence 6931 from Patent WO02053728.                   54   0.014  1
(AX482937) Sequence 237 from Patent WO02053728.                    54   0.014  1
(AX346108) Sequence 1179 from Patent WO0200928.                    54   0.014  1
(AX281441) Sequence 105 from Patent WO0177376.                     54   0.014  1
(GC701930) Sequence 17175 from patent US 6812339.                  54   0.014  1
(AR549071) Sequence 4202 from patent US 6747137.                   54   0.014  1
(AR548645) Sequence 3776 from patent US 6747137.                   54   0.014  1
(AC154869) Monodelphis domestica, clone XX-216E9, complete s...    54   0.014  1
(BX538353) Cryptosporidium parvum chromosome 6, complete seq...    54   0.014  1
(AY471868) Cryptosporidium parvum CP2 mRNA, complete cds.          54   0.014  1
(AY013583) Haliotis kamtschatkana clone Hka85 microsatellite...    54   0.014  1
(AM747039) Ostertagia ostertagi mRNA for two-domain activati...    54   0.014  1
(AC115605) Dictyostelium discoideum chromosome 2 map 5817431...    54   0.014  1
(AB302955) Corbicula fluminea Msx gene for Msx protein, comp...    54   0.014  1
(AJ010770) Homo sapiens hyperion gene, exons 1-50.                 54   0.014  1
(AC026445) Homo sapiens chromosome 5 clone CTD-2306M10, comp...    54   0.014  1
(AC024610) Homo sapiens chromosome 17, clone RP11-17M24, com...    54   0.014  1
(AC008070) Homo sapiens BAC clone RP11-368J13 from 2, comple...    54   0.014  1
(AC004013) Homo sapiens BAC clone GS1-541B18 from 7, complet...    54   0.014  1
(AC162085) Bos taurus clone CH240-109P6, WORKING DRAFT SEQUE...    54   0.014  1
(AC149965) Strongylocentrotus purpuratus clone R3-32B5, WORK...    54   0.014  1
(AC141375) Rattus norvegicus clone CH230-156E4, WORKING DRAF...    54   0.014  1
(AC141189) Rattus norvegicus clone CH230-343I21, WORKING DRA...    54   0.014  1
(AC140114) Rattus norvegicus clone CH230-466I4, WORKING DRAF...    54   0.014  1
(AC139604) Rattus norvegicus clone CH230-203N1, *** SEQUENCI...    54   0.014  1
(AC137398) Rattus norvegicus clone CH230-unknown, *** SEQUEN...    54   0.014  1
(AC136464) Rattus norvegicus clone CH230-124A11, *** SEQUENC...    54   0.014  1
(AC136420) Rattus norvegicus clone CH230-5P9, *** SEQUENCING...    54   0.014  1
(AC135740) Rattus norvegicus clone CH230-471C8, *** SEQUENCI...    54   0.014  1
(AC135443) Rattus norvegicus clone CH230-262C23, WORKING DRA...    54   0.014  1
(AC135304) Rattus norvegicus clone CH230-89K7, *** SEQUENCIN...    54   0.014  1
(AC134643) Rattus norvegicus clone CH230-254O4, *** SEQUENCI...    54   0.014  1
(AC132047) Rattus norvegicus clone CH230-278L9, WORKING DRAF...    54   0.014  1
(AC131144) Rattus norvegicus clone CH230-96D7, *** SEQUENCIN...    54   0.014  1
(AC130595) Rattus norvegicus clone CH230-393M7, WORKING DRAF...    54   0.014  1
(AC130505) Rattus norvegicus clone CH230-169D16, WORKING DRA...    54   0.014  1
(AC130244) Rattus norvegicus clone CH230-320H23, WORKING DRA...    54   0.014  1
(AC130228) Rattus norvegicus clone CH230-53K23, *** SEQUENCI...    54   0.014  1
(AC129809) Rattus norvegicus clone CH230-284M17, *** SEQUENC...    54   0.014  1
(AC129705) Rattus norvegicus clone CH230-8J12, WORKING DRAFT...    54   0.014  1
(AC129383) Rattus norvegicus clone CH230-36A10, *** SEQUENCI...    54   0.014  1
(AC129369) Rattus norvegicus clone CH230-126A1, *** SEQUENCI...    54   0.014  1
(AC129237) Rattus norvegicus clone CH230-26C8, WORKING DRAFT...    54   0.014  1
(AC128761) Rattus norvegicus clone CH230-190H17, WORKING DRA...    54   0.014  1
(AC128508) Rattus norvegicus clone CH230-35D21, *** SEQUENCI...    54   0.014  1
(AC128420) Rattus norvegicus clone CH230-142B17, WORKING DRA...    54   0.014  1
(AC128351) Rattus norvegicus clone CH230-52D19, *** SEQUENCI...    54   0.014  1
(AC128247) Rattus norvegicus clone CH230-523D17, WORKING DRA...    54   0.014  1
(AC128133) Rattus norvegicus clone CH230-396J24, WORKING DRA...    54   0.014  1
(AC128110) Rattus norvegicus clone CH230-410C11, WORKING DRA...    54   0.014  1
(AC127156) Rattus norvegicus clone CH230-7B10, *** SEQUENCIN...    54   0.014  1
(AC126891) Rattus norvegicus clone CH230-49A17, *** SEQUENCI...    54   0.014  1
(AC122085) Rattus norvegicus clone CH230-33H19, *** SEQUENCI...    54   0.014  1
(AC119577) Rattus norvegicus clone CH230-354P24, *** SEQUENC...    54   0.014  1
(AC119469) Rattus norvegicus clone CH230-365J20, WORKING DRA...    54   0.014  1
(AC119467) Rattus norvegicus clone CH230-182K24, *** SEQUENC...    54   0.014  1
(AC119328) Rattus norvegicus clone CH230-161H21, WORKING DRA...    54   0.014  1
(AC119130) Rattus norvegicus clone CH230-414I23, *** SEQUENC...    54   0.014  1
(AC118120) Rattus norvegicus clone CH230-26C23, *** SEQUENCI...    54   0.014  1
(AC116094) Rattus norvegicus clone CH230-13P1, *** SEQUENCIN...    54   0.014  1
(AC115421) Rattus norvegicus clone CH230-117M15, WORKING DRA...    54   0.014  1
(AC114154) Rattus norvegicus clone CH230-149K22, WORKING DRA...    54   0.014  1
(AC114056) Rattus norvegicus clone CH230-192I7, WORKING DRAF...    54   0.014  1
(AC112086) Rattus norvegicus clone CH230-332D11, *** SEQUENC...    54   0.014  1
(AC111974) Rattus norvegicus clone CH230-268E11, WORKING DRA...    54   0.014  1
(AC111677) Rattus norvegicus clone CH230-46L15, *** SEQUENCI...    54   0.014  1
(AC111576) Rattus norvegicus clone CH230-68K10, *** SEQUENCI...    54   0.014  1
(AC111428) Rattus norvegicus clone CH230-246F11, WORKING DRA...    54   0.014  1
(AC109910) Rattus norvegicus clone CH230-53N4, *** SEQUENCIN...    54   0.014  1
(AC109561) Rattus norvegicus clone CH230-287F11, *** SEQUENC...    54   0.014  1
(AC108595) Rattus norvegicus clone CH230-216D22, WORKING DRA...    54   0.014  1
(AC108299) Rattus norvegicus clone CH230-221N24, *** SEQUENC...    54   0.014  1
(AC107599) Rattus norvegicus clone CH230-92G12, *** SEQUENCI...    54   0.014  1
(AC107474) Rattus norvegicus clone CH230-112C3, WORKING DRAF...    54   0.014  1
(AC107351) Rattus norvegicus clone CH230-92G10, WORKING DRAF...    54   0.014  1
(AC107188) Rattus norvegicus clone CH230-82I10, *** SEQUENCI...    54   0.014  1
(AC106610) Rattus norvegicus clone CH230-171K1, *** SEQUENCI...    54   0.014  1
(AC106542) Rattus norvegicus clone CH230-91P1, WORKING DRAFT...    54   0.014  1
(AC106534) Rattus norvegicus clone CH230-158G15, *** SEQUENC...    54   0.014  1
(AC106420) Rattus norvegicus clone CH230-129P15, *** SEQUENC...    54   0.014  1
(AC106088) Rattus norvegicus clone CH230-126K5, WORKING DRAF...    54   0.014  1
(AC105718) Rattus norvegicus clone CH230-187A11, *** SEQUENC...    54   0.014  1
(AC104926) Mus musculus clone RP24-573F21, WORKING DRAFT SEQ...    54   0.014  1
(AC103183) Rattus norvegicus clone CH230-105P20, WORKING DRA...    54   0.014  1
(AC103110) Rattus norvegicus clone CH230-19B23, *** SEQUENCI...    54   0.014  1
(AC102500) Mus musculus clone RP24-283O18, WORKING DRAFT SEQ...    54   0.014  1
(AC102241) Mus musculus clone RP24-140F19, WORKING DRAFT SEQ...    54   0.014  1
(AC101560) Mus musculus clone RP23-194M1, LOW-PASS SEQUENCE ...    54   0.014  1
(AC099658) Rattus norvegicus clone CH230-200K4, WORKING DRAF...    54   0.014  1
(AC099426) Rattus norvegicus clone CH230-209O11, WORKING DRA...    54   0.014  1
(AC097118) Rattus norvegicus clone CH230-36G3, *** SEQUENCIN...    54   0.014  1
(AC097026) Rattus norvegicus clone CH230-85M24, WORKING DRAF...    54   0.014  1
(AC096475) Rattus norvegicus clone CH230-53F8, WORKING DRAFT...    54   0.014  1
(AC096434) Rattus norvegicus clone CH230-16I12, *** SEQUENCI...    54   0.014  1
(AC096261) Rattus norvegicus clone CH230-81A12, *** SEQUENCI...    54   0.014  1
(AC096177) Rattus norvegicus clone CH230-11D4, *** SEQUENCIN...    54   0.014  1
(AC095718) Rattus norvegicus clone CH230-9K14, WORKING DRAFT...    54   0.014  1
(AC095424) Rattus norvegicus clone CH230-7A8, *** SEQUENCING...    54   0.014  1
(AC095202) Rattus norvegicus clone CH230-9I10, *** SEQUENCIN...    54   0.014  1
(AC095194) Rattus norvegicus clone CH230-5H20, *** SEQUENCIN...    54   0.014  1
(AC094593) Rattus norvegicus clone CH230-4D11, *** SEQUENCIN...    54   0.014  1
(DQ273271) Asparagus officinalis clone B4-L7-94, *** SEQUENC...    54   0.014  1
(CU929496) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    54   0.014  1
(CU539058) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    54   0.014  1
(AC094070) Rattus norvegicus clone CH230-108N20, *** SEQUENC...    54   0.014  1
(AC094025) Rattus norvegicus clone CH230-12O16, *** SEQUENCI...    54   0.014  1
(AC093189) Pan troglodytes clone RP43-17P3, WORKING DRAFT SE...    54   0.014  1
(AC091323) Mus musculus chromosome 17 clone RP23-333E5 map 1...    54   0.014  1
(AC087511) Mus musculus strain C57BL6/J clone RP23-169K1, WO...    54   0.014  1
(AC073703) Mus musculus clone RP23-16E5, WORKING DRAFT SEQUE...    54   0.014  1
(CR762446) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    54   0.014  1
(AY491413) Mus musculus chromosome 17 clone BAC 229p12, *** ...    54   0.014  1
(AL365337) Mouse DNA sequence *** SEQUENCING IN PROGRESS ***...    54   0.014  1
(AC221091) Bos taurus clone CH240-392N5, WORKING DRAFT SEQUE...    54   0.014  1
(AC217207) Oryza punctata clone OP__Ba0085E13, *** SEQUENCIN...    54   0.014  1
(AC201633) Strongylocentrotus purpuratus clone R3-3068I9, WO...    54   0.014  1
(AC201329) Strongylocentrotus purpuratus clone R3-16M4, WORK...    54   0.014  1
(AC201209) Strongylocentrotus purpuratus clone R3-15D6, WORK...    54   0.014  1
(AC201150) Strongylocentrotus purpuratus clone R3-14E24, WOR...    54   0.014  1
(AC201112) Strongylocentrotus purpuratus clone R3-13K6, WORK...    54   0.014  1
(AC186126) Felis catus clone RP86-87E6, WORKING DRAFT SEQUEN...    54   0.014  1
(AC184650) Strongylocentrotus purpuratus clone R3-3075L23, W...    54   0.014  1
(AC184564) Strongylocentrotus purpuratus clone R3-3052G21, W...    54   0.014  1
(AC184536) Strongylocentrotus purpuratus clone R3-4017B7, WO...    54   0.014  1
(AC184467) Strongylocentrotus purpuratus clone R3-4001G11, W...    54   0.014  1
(AC181923) Strongylocentrotus purpuratus clone R3-1009K23, W...    54   0.014  1
(AC181685) Strongylocentrotus purpuratus clone R3-30P17, WOR...    54   0.014  1
(AC181517) Strongylocentrotus purpuratus clone R3-1111B8, WO...    54   0.014  1
(AC181380) Strongylocentrotus purpuratus clone R3-4D13, WORK...    54   0.014  1
(AC181266) Strongylocentrotus purpuratus clone R3-4012L23, W...    54   0.014  1
(AC181195) Strongylocentrotus purpuratus clone R3-12D21, WOR...    54   0.014  1
(AC181180) Strongylocentrotus purpuratus clone R3-15C3, WORK...    54   0.014  1
(AC181133) Strongylocentrotus purpuratus clone R3-3037E15, W...    54   0.014  1
(AC181125) Strongylocentrotus purpuratus clone R3-16I2, WORK...    54   0.014  1
(AC181115) Strongylocentrotus purpuratus clone R3-3043N23, W...    54   0.014  1
(AC180846) Strongylocentrotus purpuratus clone R3-3070P10, W...    54   0.014  1
(AC180681) Strongylocentrotus purpuratus clone R3-3087P23, W...    54   0.014  1
(AC180526) Strongylocentrotus purpuratus clone R3-3099F22, W...    54   0.014  1
(AC179911) Strongylocentrotus purpuratus clone R3-1003F14, W...    54   0.014  1
(AC179778) Strongylocentrotus purpuratus clone R3-1015N15, W...    54   0.014  1
(AC179561) Strongylocentrotus purpuratus clone R3-8D21, WORK...    54   0.014  1
(AC179368) Strongylocentrotus purpuratus clone R3-1101P9, WO...    54   0.014  1
(AC179318) Strongylocentrotus purpuratus clone R3-1102O20, W...    54   0.014  1
(AC179190) Strongylocentrotus purpuratus clone R3-4019E18, W...    54   0.014  1
(AC179169) Strongylocentrotus purpuratus clone R3-4016G2, WO...    54   0.014  1
(AC178936) Strongylocentrotus purpuratus clone R3-1108P22, W...    54   0.014  1
(AC178926) Strongylocentrotus purpuratus clone R3-3115H18, W...    54   0.014  1
(AC178476) Strongylocentrotus purpuratus clone R3-3039C18, W...    54   0.014  1
(AC178450) Strongylocentrotus purpuratus clone R3-3039F18, W...    54   0.014  1
(AC178344) Strongylocentrotus purpuratus clone R3-3105E13, W...    54   0.014  1
(AC178163) Strongylocentrotus purpuratus clone R3-3081I9, WO...    54   0.014  1
(AC178068) Strongylocentrotus purpuratus clone R3-3059B15, W...    54   0.014  1
(AC178063) Strongylocentrotus purpuratus clone R3-3056P07, W...    54   0.014  1
(AC177701) Strongylocentrotus purpuratus clone R3-1011L20, W...    54   0.014  1
(AC177611) Strongylocentrotus purpuratus clone R3-1023F8, WO...    54   0.014  1
(AC177387) Strongylocentrotus purpuratus clone R3-53B10, WOR...    54   0.014  1
(AC177383) Strongylocentrotus purpuratus clone R3-1031L21, W...    54   0.014  1
(AC177356) Strongylocentrotus purpuratus clone R3-52F01, WOR...    54   0.014  1
(AC177320) Strongylocentrotus purpuratus clone R3-46F7, WORK...    54   0.014  1
(AC177243) Strongylocentrotus purpuratus clone R3-1034F13, W...    54   0.014  1
(AC177132) Strongylocentrotus purpuratus clone R3-4014J20, W...    54   0.014  1
(AC177076) Strongylocentrotus purpuratus clone R3-4004L10, W...    54   0.014  1
(AC176837) Strongylocentrotus purpuratus clone R3-3120B11, W...    54   0.014  1
(AC176393) Strongylocentrotus purpuratus clone R3-3012P16, W...    54   0.014  1
(AC176363) Strongylocentrotus purpuratus clone R3-3048E21, W...    54   0.014  1
(AC176337) Strongylocentrotus purpuratus clone R3-3053N1, WO...    54   0.014  1
(AC176106) Strongylocentrotus purpuratus clone R3-24G8, WORK...    54   0.014  1
(AC175947) Strongylocentrotus purpuratus clone R3-17C6, WORK...    54   0.014  1
(AC175942) Strongylocentrotus purpuratus clone R3-17B22, WOR...    54   0.014  1
(AC175917) Strongylocentrotus purpuratus clone R3-12M2, WORK...    54   0.014  1
(AC174882) Strongylocentrotus purpuratus clone R3-1113G17, W...    54   0.014  1
(AC174177) Strongylocentrotus purpuratus clone R3-3078A16, W...    54   0.014  1
(AC174108) Strongylocentrotus purpuratus clone R3-3017G3, WO...    54   0.014  1
(AC173361) Strongylocentrotus purpuratus clone R3-1113J20, W...    54   0.014  1
(AC171651) Macaca mulatta clone CH250-61I10, WORKING DRAFT S...    54   0.014  1
(AC168836) Strongylocentrotus purpuratus clone R3-13C9, WORK...    54   0.014  1
(AC168641) Strongylocentrotus purpuratus clone R3-3017O8, WO...    54   0.014  1
(AC168386) Strongylocentrotus purpuratus clone R3-4013A3, WO...    54   0.014  1
(AC166968) Mus musculus chromosome 18 clone RP24-335J23 map ...    54   0.014  1
(AZ816440) 2M0085M08F Mouse 10kb plasmid UUGC1M library Mus ...    54   0.014  1
(AZ658292) 1M0535E06F Mouse 10kb plasmid UUGC1M library Mus ...    54   0.014  1
(AZ583039) 1M0376E14R Mouse 10kb plasmid UUGC1M library Mus ...    54   0.014  1
(FI571578) 5SE160H10 GGTC Gene Trap Library GV32C07 Mus musc...    54   0.014  1
(FH364915) CHO_OF4478xk04r1.ab1 CHO_OF4 Nicotiana tabacum ge...    54   0.014  1
(ET070983) QM0AAA4DE04RM1 CCL1 Citrus clementina genomic clo...    54   0.014  1
(ER917410) CB-SIN-RV55 Mavilio hematopoietic cell CD34+ Homo...    54   0.014  1
(EJ424202) 1093012251399 Global-Ocean-Sampling_GS-28-01-01-1...    54   0.014  1
(DH754967) Rattus norvegicus DNA, BAC clone: RNB1-334F20, 3'...    54   0.014  1
(DH506729) Monosiga ovata DNA, fosmid clone: MOF-078K15, gen...    54   0.014  1
(DH505345) Monosiga ovata DNA, fosmid clone: MOF-076G19, gen...    54   0.014  1
(DH502215) Monosiga ovata DNA, fosmid clone: MOF-071D10, gen...    54   0.014  1
(DH499112) Monosiga ovata DNA, fosmid clone: MOF-065N24, gen...    54   0.014  1
(DH496923) Monosiga ovata DNA, fosmid clone: MOF-061P18, gen...    54   0.014  1
(DH495507) Monosiga ovata DNA, fosmid clone: MOF-059J02, gen...    54   0.014  1
(DH495319) Monosiga ovata DNA, fosmid clone: MOF-059D18, gen...    54   0.014  1
(DH491219) Monosiga ovata DNA, fosmid clone: MOF-051M18, gen...    54   0.014  1
(DH474878) Monosiga ovata DNA, fosmid clone: MOF-023H19, gen...    54   0.014  1
(DH472380) Monosiga ovata DNA, fosmid clone: MOF-019C18, gen...    54   0.014  1
(DH467206) Monosiga ovata DNA, fosmid clone: MOF-009O07, gen...    54   0.014  1
(DE888298) Macropus eugenii DNA, BAC clone: MEB1-063O12_F, 5...    54   0.014  1
(DE836957) Monosiga ovata DNA, BAC clone: MOBS-014K20_F, 5'end.    54   0.014  1
(DE238617) Trifolium pratense DNA, clone:RCG36170.                 54   0.014  1
(DE238587) Trifolium pratense DNA, clone:RCG36121.                 54   0.014  1
(DE238170) Trifolium pratense DNA, clone:RCG34661.                 54   0.014  1
(DE236563) Trifolium pratense DNA, clone:RCG32026.                 54   0.014  1
(DE227518) Trifolium pratense DNA, clone:RCG20183.                 54   0.014  1
(DE222207) Trifolium pratense DNA, clone:RCG13627.                 54   0.014  1
(DE221803) Trifolium pratense DNA, clone:RCG13118.                 54   0.014  1
(DE221789) Trifolium pratense DNA, clone:RCG13104.                 54   0.014  1

>(AB009080) Dictyostelium discoideum gene for TRFA, complete cds.
          Length = 4875

 Score =  583 bits (294), Expect(7) = 0.0
 Identities = 294/294 (100%)
 Strand = Plus / Plus


Query: 799  tgatgatactactactactaccaccaccaccactacaaaatcagccaaatctccaaactc 858
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4334 tgatgatactactactactaccaccaccaccactacaaaatcagccaaatctccaaactc 4393


Query: 859  ttcaccaactagatctgatgaagttgttgaaccacatcaagatgcctcacaagaggaaat 918
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4394 ttcaccaactagatctgatgaagttgttgaaccacatcaagatgcctcacaagaggaaat 4453


Query: 919  caataaaagaaaattagaagatgatatcacttcaactccaagtaaaagattaaaaccaga 978
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4454 caataaaagaaaattagaagatgatatcacttcaactccaagtaaaagattaaaaccaga 4513


Query: 979  ttcaactccttcctctgcaacaactgcttcaactccatctgaacaacctgaatcaccact 1038
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4514 ttcaactccttcctctgcaacaactgcttcaactccatctgaacaacctgaatcaccact 4573


Query: 1039 aaagaaagaaaatccagttggggaaactttatcaccagaaattaaagattcaaa 1092
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4574 aaagaaagaaaatccagttggggaaactttatcaccagaaattaaagattcaaa 4627

 Score =  480 bits (242), Expect(7) = 0.0
 Identities = 242/242 (100%)
 Strand = Plus / Plus


Query: 191  ttggacaaagagcactttcaccacaatcatcacaacataaagatagaagagaaataatat 250
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3499 ttggacaaagagcactttcaccacaatcatcacaacataaagatagaagagaaataatat 3558


Query: 251  tagatgaagaatctgatattaatgaaagatcaaaaacaagatcaccatcaattgttaaag 310
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3559 tagatgaagaatctgatattaatgaaagatcaaaaacaagatcaccatcaattgttaaag 3618


Query: 311  aagctgaagaaaagagagaaactgtgattgtagataaggaaagatcaccaactcctatta 370
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3619 aagctgaagaaaagagagaaactgtgattgtagataaggaaagatcaccaactcctatta 3678


Query: 371  ttacagaaaaaccagatgaaaaacaagttgagaaggttaccgataaagaatcatctttag 430
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3679 ttacagaaaaaccagatgaaaaacaagttgagaaggttaccgataaagaatcatctttag 3738


Query: 431  tt 432
            ||
Sbjct: 3739 tt 3740

 Score =  105 bits (53), Expect(7) = 0.0
 Identities = 53/53 (100%)
 Strand = Plus / Plus


Query: 1270 taaacaaccaacaagggctccaattaaaccttcatctcgtaaactcgaaagat 1322
            |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4805 taaacaaccaacaagggctccaattaaaccttcatctcgtaaactcgaaagat 4857

 Score = 91.7 bits (46), Expect(7) = 0.0
 Identities = 46/46 (100%)
 Strand = Plus / Plus


Query: 81   tagtagattcgaacatcaaaataacagaacatcttcaccatttgaa 126
            ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3389 tagtagattcgaacatcaaaataacagaacatcttcaccatttgaa 3434

 Score = 77.8 bits (39), Expect(7) = 0.0
 Identities = 39/39 (100%)
 Strand = Plus / Plus


Query: 670  gaatccacaactactacaactaatgatgaggatgaagaa 708
            |||||||||||||||||||||||||||||||||||||||
Sbjct: 3978 gaatccacaactactacaactaatgatgaggatgaagaa 4016

 Score = 71.9 bits (36), Expect(7) = 0.0
 Identities = 36/36 (100%)
 Strand = Plus / Plus


Query: 1130 actaatactggcagtagcagtaccaatagttcagct 1165
            ||||||||||||||||||||||||||||||||||||
Sbjct: 4665 actaatactggcagtagcagtaccaatagttcagct 4700

 Score = 30.2 bits (15), Expect(7) = 0.0
 Identities = 15/15 (100%)
 Strand = Plus / Plus


Query: 777  agacaaagagtcatc 791
            |||||||||||||||
Sbjct: 4313 agacaaagagtcatc 4327

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 102105510
Number of Hits to DB: 957,908,614
Number of extensions: 67848019
Number of successful extensions: 6897251
Number of sequences better than 10.0: 4793
Length of query: 1340
Length of database: 101,790,757,118
Length adjustment: 24
Effective length of query: 1316
Effective length of database: 99,340,224,878
Effective search space: 130731735939448
Effective search space used: 130731735939448
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7.10
Homology vs Protein 
Query= Contig-U00078-1 (Contig-U00078-1Q) /CSM_Contig/Contig-U00078-1Q.Seq.d
         (1340 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(O77033) RecName: Full=General transcriptional corepressor trfA;...   186   1e-45
FB803778_1(FB803778|pid:none) Sequence 23051 from Patent WO20080...    36   2.8
DQ177346_156(DQ177346|pid:none) Koi herpesvirus strain KHV-I, co...    36   3.6
(A5WUN7) RecName: Full=Calmodulin-regulated spectrin-associated ...    35   4.7
CP000673_809(CP000673|pid:none) Clostridium kluyveri DSM 555, co...    35   4.7
AJ786380_1(AJ786380|pid:none) Cryptosporidium parvum mt1 gene fo...    35   6.2
EU719627_1(EU719627|pid:none) Human parainfluenza virus 3 isolat...    35   6.2
FB803740_1(FB803740|pid:none) Sequence 23013 from Patent WO20080...    35   6.2
AB052918_1(AB052918|pid:none) Homo sapiens hMCLC-4 mRNA for Mid-...    35   8.1
AB052916_1(AB052916|pid:none) Homo sapiens hMCLC-2 mRNA for Mid-...    35   8.1
CP001033_599(CP001033|pid:none) Streptococcus pneumoniae CGSP14,...    35   8.1
CP000920_604(CP000920|pid:none) Streptococcus pneumoniae P1031, ...    35   8.1
(Q96S66) RecName: Full=Chloride channel CLIC-like protein 1; Alt...    35   8.1

>(O77033) RecName: Full=General transcriptional corepressor trfA;
            &AB009080_1(AB009080|pid:none) &T14004(T14004)
          Length = 1390

 Score =  186 bits (473), Expect = 1e-45
 Identities = 99/120 (82%), Positives = 99/120 (82%)
 Frame = +1

Query: 85   RFEHQNNRTSSPFEXXXXXXXXXXXXXXXXXXXXXIGQRALSPQSSQHKDRREIILDEES 264
            RFEHQNNRTSSPFE                     IGQRALSPQSSQHKDRREIILDEES
Sbjct: 903  RFEHQNNRTSSPFENNSNNNNNNNNNNNNNINYNNIGQRALSPQSSQHKDRREIILDEES 962

Query: 265  DINERSKTRSPSIVKEAEEKRETVIVDKERSPTPIITEKPDEKQVEKVTDKESSLVEKVD 444
            DINERSKTRSPSIVKEAEEKRETVIVDKERSPTPIITEKPDEKQVEKVTDKESSLVEKVD
Sbjct: 963  DINERSKTRSPSIVKEAEEKRETVIVDKERSPTPIITEKPDEKQVEKVTDKESSLVEKVD 1022

 Score =  169 bits (428), Expect(2) = 1e-42
 Identities = 99/182 (54%), Positives = 99/182 (54%)
 Frame = +2

Query: 776  KTKSHQKNDDXXXXXXXXXXKSAKSPNSSPTRSDEVVEPHQDASQEEINKRKLEDDITST 955
            K K   KNDD          KSAKSPNSSPTRSDEVVEPHQDASQEEINKRKLEDDITST
Sbjct: 1209 KDKESSKNDDTTTTTTTTTTKSAKSPNSSPTRSDEVVEPHQDASQEEINKRKLEDDITST 1268

Query: 956  PSKRLKPDXXXXXXXXXXXXXEQPESPLKKENPVGETLSPEIKDXXXXXXXXXXXXXXXX 1135
            PSKRLKPD             EQPESPLKKENPVGETLSPEIKD
Sbjct: 1269 PSKRLKPDSTPSSATTASTPSEQPESPLKKENPVGETLSPEIKDSKSSSSSSSSSSSSTN 1328

Query: 1136 XXXXXXXXXAKNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKNKQPTRAPIKPSSRKL 1315
                     AKN                               KNKQPTRAPIKPSSRKL
Sbjct: 1329 TGSSSTNSSAKNERDRDRERERERERDREREREREREREREREKNKQPTRAPIKPSSRKL 1388

Query: 1316 ER 1321
            ER
Sbjct: 1389 ER 1390

 Score = 28.9 bits (63), Expect(2) = 1e-42
 Identities = 12/12 (100%), Positives = 12/12 (100%)
 Frame = +1

Query: 760  VEPTHKDKESSK 795
            VEPTHKDKESSK
Sbjct: 1204 VEPTHKDKESSK 1215

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 823,227,842
Number of extensions: 8774222
Number of successful extensions: 41720
Number of sequences better than 10.0: 13
Number of HSP's gapped: 41129
Number of HSP's successfully gapped: 16
Length of query: 446
Length of database: 1,051,180,864
Length adjustment: 132
Effective length of query: 314
Effective length of database: 623,955,076
Effective search space: 195921893864
Effective search space used: 195921893864
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
PSORT 

 psg: 0.63  gvh: 0.12  alm: 0.66  top: 0.53  tms: 0.00  mit: 0.31  mip: 0.06
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: nuclear
	 28.0 %: cytoplasmic
	 20.0 %: mitochondrial
	 12.0 %: cytoskeletal

>> prediction for Contig-U00078-1 is nuc
VS (DIR, S) 1
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 2
SL (DIR, L) 5
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0