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Dicty_cDB
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U04777-1
Contig ID Contig-U04777-1
Contig update 2001. 8.29
Contig sequence 
>Contig-U04777-1 (Contig-U04777-1Q) /CSM_Contig/Contig-U04777-1Q.Seq.d
GAAAAAATTCAAAGAATTTCAGATTTAGTAGCAGCATATCAAAAAGTTTC
ATCATTTAAAAAGATAGAAAAGAAATTAAATAATGGAAAATCATATAAAA
TTAAAAAAATATTTTAATGAGAGGAAGATATTATTATCCAGCTAAAGTTA
ATAGAAAGAGTGCATCACATATNACATTAATTAAAAACACAGCAATGAAT
ACATTTCAAAATATAGAGGAAGCAACTGATGAAGAAATCTACAATAGAAT
GTACGCAGCCAGACAAAGAGAGAAAATGTTGAAAACAAGTGCTTTCGTTC
AATCCTTTTTGGGTATGGCTGGTCAAAGTTACCAAAAAGCATTACAAAAA
CATGGTTTAACTTCAAGTGATGGTACTTTTGAATATAATGAAGAAGATGA
TGAAGATTATGAACCTTCTGAAAGTGATGATGATGATGATGAAGGTGAAC
AAAATGGCGAAGAAGAGGATAATTCTGATACTGAAGATGAAGAAGAACAA
CAATTAAAACAACTTGAAGCTAAAAATGAAGAAGATGAAGAATTTGAAGA
ACAAGAAATAGATGAAGATGAAGAAGAAGTAGATGAGGATGAAGAAAATG
GCGAAGATGAAGGTTTTGAAATGGAAGATGATTTTGAGATTTTGAAGATT
CTGAATAAAACTAAATAGTAACAAAAAAAAAAAAAAAAAAACAACTGTTC
TCATAAATAATTCATTCATTTAAATTATTCA
Gap no gap
Contig length 731
Chromosome number (1..6, M) 5
Chromosome length 5062330
Start point 1390329
End point 1391062
Strand (PLUS/MINUS) PLUS
Number of clones 1
Number of EST 1
Link to clone list U04777
List of clone(s) 

est1=SSC788E,1,732
Translated Amino Acid sequence 
knsknfrfsssisksfii*kdrkeik*wkii*n*KNILMRGRYYYPAKVNRKSASHXTLI
KNTAMNTFQNIEEATDEEIYNRMYAARQREKMLKTSAFVQSFLGMAGQSYQKALQKHGLT
SSDGTFEYNEEDDEDYEPSESDDDDDEGEQNGEEEDNSDTEDEEEQQLKQLEAKNEEDEE
FEEQEIDEDEEEVDEDEENGEDEGFEMEDDFEILKILNKTK**qkkkkknncshk*fihl
nys
Translated Amino Acid sequence (All Frames) 
Frame A:
ekiqrisdlvaayqkvssfkkiekklnngksykikkif**eediiiqlkliervhhixh*
lktqq*ihfki*rkqlmkkstiectqpdkerkc*kqvlsfnpfwvwlvkvtkkhyknmv*
lqvmvllnimkkmmkimnllkvmmmmmkvnkmakkriililkmkknnn*nnlklkmkkmk
nlknkk*mkmkkk*mrmkkmakmkvlkwkmilrf*rf*iklnsnkkkkkkttvlinnsfi
*ii


Frame B:
kkfkefqi**qhikkfhhlkr*krn*imenhiklkkyfnerkillss*s**kecityxin
*khsneyiskyrgsn**rnlq*nvrsqtkrenvenkcfrsilfgygwsklpksitktwfn
fk*wyf*i**rr**rl*tf*k******r*tkwrrrg*f*y*r*rrttiktt*s*k*rr*r
i*rtrnr*r*rrsr*g*rkwrr*rf*ngr*f*dfedse*n*ivtkkkkkkqlfs*iihsf
klf


Frame C:
knsknfrfsssisksfii*kdrkeik*wkii*n*KNILMRGRYYYPAKVNRKSASHXTLI
KNTAMNTFQNIEEATDEEIYNRMYAARQREKMLKTSAFVQSFLGMAGQSYQKALQKHGLT
SSDGTFEYNEEDDEDYEPSESDDDDDEGEQNGEEEDNSDTEDEEEQQLKQLEAKNEEDEE
FEEQEIDEDEEEVDEDEENGEDEGFEMEDDFEILKILNKTK**qkkkkknncshk*fihl
nys
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U04777-1 (Contig-U04777-1Q)
/CSM_Contig/Contig-U04777-1Q.Seq.d
         (731 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U04777-1 (Contig-U04777-1Q) /CSM_Contig/Conti...   563  e-161
Contig-U10976-1 (Contig-U10976-1Q) /CSM_Contig/Conti...    42  8e-04
Contig-U11196-1 (Contig-U11196-1Q) /CSM_Contig/Conti...    36  0.051
Contig-U05597-1 (Contig-U05597-1Q) /CSM_Contig/Conti...    36  0.051
Contig-U13902-1 (Contig-U13902-1Q) /CSM_Contig/Conti...    34  0.20
Contig-U13875-1 (Contig-U13875-1Q) /CSM_Contig/Conti...    34  0.20
Contig-U12528-1 (Contig-U12528-1Q) /CSM_Contig/Conti...    34  0.20
Contig-U12399-1 (Contig-U12399-1Q) /CSM_Contig/Conti...    34  0.20
Contig-U12260-1 (Contig-U12260-1Q) /CSM_Contig/Conti...    34  0.20
Contig-U11785-1 (Contig-U11785-1Q) /CSM_Contig/Conti...    34  0.20

>Contig-U04777-1 (Contig-U04777-1Q) /CSM_Contig/Contig-U04777-1Q.Seq.d
          Length = 731

 Score =  563 bits (284), Expect = e-161
 Identities = 287/287 (100%)
 Strand = Plus / Plus

                                                                       
Query: 110 tattttaatgagaggaagatattattatccagctaaagttaatagaaagagtgcatcaca 169
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 110 tattttaatgagaggaagatattattatccagctaaagttaatagaaagagtgcatcaca 169

                                                                       
Query: 170 tatnacattaattaaaaacacagcaatgaatacatttcaaaatatagaggaagcaactga 229
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 170 tatnacattaattaaaaacacagcaatgaatacatttcaaaatatagaggaagcaactga 229

                                                                       
Query: 230 tgaagaaatctacaatagaatgtacgcagccagacaaagagagaaaatgttgaaaacaag 289
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 230 tgaagaaatctacaatagaatgtacgcagccagacaaagagagaaaatgttgaaaacaag 289

                                                                       
Query: 290 tgctttcgttcaatcctttttgggtatggctggtcaaagttaccaaaaagcattacaaaa 349
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 tgctttcgttcaatcctttttgggtatggctggtcaaagttaccaaaaagcattacaaaa 349

                                                          
Query: 350 acatggtttaacttcaagtgatggtacttttgaatataatgaagaag 396
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 acatggtttaacttcaagtgatggtacttttgaatataatgaagaag 396


 Score =  153 bits (77), Expect = 3e-37
 Identities = 77/77 (100%)
 Strand = Plus / Plus

                                                                       
Query: 449 acaaaatggcgaagaagaggataattctgatactgaagatgaagaagaacaacaattaaa 508
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 acaaaatggcgaagaagaggataattctgatactgaagatgaagaagaacaacaattaaa 508

                            
Query: 509 acaacttgaagctaaaa 525
           |||||||||||||||||
Sbjct: 509 acaacttgaagctaaaa 525


 Score =  131 bits (66), Expect = 1e-30
 Identities = 66/66 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  gaaaaaattcaaagaatttcagatttagtagcagcatatcaaaaagtttcatcatttaaa 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  gaaaaaattcaaagaatttcagatttagtagcagcatatcaaaaagtttcatcatttaaa 60

                
Query: 61 aagata 66
          ||||||
Sbjct: 61 aagata 66


 Score =  119 bits (60), Expect = 4e-27
 Identities = 60/60 (100%)
 Strand = Plus / Plus

                                                                       
Query: 613 gttttgaaatggaagatgattttgagattttgaagattctgaataaaactaaatagtaac 672
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 gttttgaaatggaagatgattttgagattttgaagattctgaataaaactaaatagtaac 672


 Score = 79.8 bits (40), Expect = 4e-15
 Identities = 40/40 (100%)
 Strand = Plus / Plus

                                                   
Query: 692 caactgttctcataaataattcattcatttaaattattca 731
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 692 caactgttctcataaataattcattcatttaaattattca 731


 Score = 32.2 bits (16), Expect = 0.80
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                           
Query: 482 tgaagatgaagaagaa 497
           ||||||||||||||||
Sbjct: 563 tgaagatgaagaagaa 578


>Contig-U10976-1 (Contig-U10976-1Q) /CSM_Contig/Contig-U10976-1Q.Seq.d
          Length = 4198

 Score = 42.1 bits (21), Expect = 8e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 493  aagaacaacaattaaaacaac 513
            |||||||||||||||||||||
Sbjct: 2930 aagaacaacaattaaaacaac 2950


 Score = 42.1 bits (21), Expect = 8e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 493  aagaacaacaattaaaacaac 513
            |||||||||||||||||||||
Sbjct: 2759 aagaacaacaattaaaacaac 2779


 Score = 32.2 bits (16), Expect = 0.80
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                            
Query: 497  acaacaattaaaacaa 512
            ||||||||||||||||
Sbjct: 3741 acaacaattaaaacaa 3756


 Score = 30.2 bits (15), Expect = 3.2
 Identities = 18/19 (94%)
 Strand = Plus / Plus

                               
Query: 494  agaacaacaattaaaacaa 512
            |||| ||||||||||||||
Sbjct: 3072 agaaaaacaattaaaacaa 3090


 Score = 30.2 bits (15), Expect = 3.2
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                           
Query: 498  caacaattaaaacaa 512
            |||||||||||||||
Sbjct: 3691 caacaattaaaacaa 3705


>Contig-U11196-1 (Contig-U11196-1Q) /CSM_Contig/Contig-U11196-1Q.Seq.d
          Length = 2477

 Score = 36.2 bits (18), Expect = 0.051
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                  
Query: 482  tgaagatgaagaagaacaacaa 503
            ||||||||| ||||||||||||
Sbjct: 1967 tgaagatgatgaagaacaacaa 1988


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9420
Number of Sequences: 6905
Number of extensions: 9420
Number of successful extensions: 1028
Number of sequences better than 10.0: 128
length of query: 731
length of database: 5,674,871
effective HSP length: 16
effective length of query: 715
effective length of database: 5,564,391
effective search space: 3978539565
effective search space used: 3978539565
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2009. 7. 1
Homology vs DNA 
Query= Contig-U04777-1 (Contig-U04777-1Q) /CSM_Contig/Contig-U04777-1Q.Seq.d
         (731 letters)

Database: ddbj_A
           102,105,510 sequences; 101,790,757,118 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(C84107) Dictyostelium discoideum slug cDNA, clone SSC788.        533   0.0    4
(AU071942) Dictyostelium discoideum slug cDNA, clone SSC788.      248   8e-78  2
(CG114439) PUFVJ66TB ZM_0.6_1.0_KB Zea mays genomic clone ZM...    44   0.34   2
(CT759584) Paramecium tetraurelia 5-PRIME EST from clone LK0...    48   0.48   1
(CP001139) Vibrio fischeri MJ11 chromosome I, complete seque...    48   0.48   1
(AC150889) Medicago truncatula chromosome 7 clone mte1-61j12...    36   0.85   5
(FG125745) LY_YIT_BG0260 German Cockroach Whole Organism cDN...    36   1.1    2
(CU929725) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    36   1.2    4
(AM685317) Entamoeba terrapinae GSS, clone terra124d10.q1k.        32   1.3    2
(DT599809) ram01-7ms1-p24 Ram01 Ribes americanum cDNA clone ...    34   1.3    2
(FP102511) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    46   1.9    1
(AC218274) Bos taurus clone CH240-289G12, WORKING DRAFT SEQU...    46   1.9    1
(AC172327) Bos taurus clone CH240-528H19, WORKING DRAFT SEQU...    46   1.9    1
(ER649239) SB_BBc16-M02.R SB_BBc Sorghum bicolor genomic 3',...    46   1.9    1
(DE965854) Macropus eugenii DNA, BAC clone: MEB1-169A18_F, 5...    46   1.9    1
(CK303341) SB02003A2F03.f2 normalized Keck-Tagu Library SB02...    46   1.9    1
(BM882146) rb26d03.y1 Meloidogyne incognita egg pAMP1 Bird M...    46   1.9    1
(BM774808) ra97h06.y1 Meloidogyne incognita egg pAMP1 Bird M...    46   1.9    1
(BI501832) rm05f08.y1 Meloidogyne arenaria egg pAMP1 v1 Chia...    46   1.9    1
(FK722267) av02100f02r1.1 Symbiotic sea anemone (Anemonia vi...    46   1.9    1
(AX535056) Sequence 83 from Patent WO02068633.                     38   2.6    2
(AC196646) Zea mays chromosome 7 clone CH201-108J23; ZMMBBc0...    44   2.7    2
(AK056724) Homo sapiens cDNA FLJ32162 fis, clone PLACE6000325.     38   2.9    2
(AM677206) Entamoeba terrapinae GSS, clone terra129f11.q1k.        40   4.3    2
(CF942914) NcESTqac05f01.y1 Nc-1 Tachyzoite cDNA Library 2 N...    34   4.9    2
(AU060865) Dictyostelium discoideum slug cDNA, clone SLB781.       34   5.2    2
(BX323994) Zebrafish DNA sequence from clone CH211-273A5 in ...    40   6.4    5
(CU466275) Zebrafish DNA sequence from clone DKEY-156G19 in ...    44   7.4    1
(BX901970) Zebrafish DNA sequence from clone CH211-214I7 in ...    44   7.4    1
(BX323030) Zebrafish DNA sequence from clone DKEYP-77D7 in l...    44   7.4    1
(BX088703) Zebrafish DNA sequence from clone CH211-241D14 in...    44   7.4    1
(BX005426) Zebrafish DNA sequence from clone DKEY-1H24 in li...    44   7.4    1
(BX005343) Zebrafish DNA sequence from clone DKEY-29F2 in li...    44   7.4    1
(AJ233787) Carassius auratus gene encoding olfactory recepto...    44   7.4    1
(AF083078) Carassius auratus putative odorant receptor (GFA2...    44   7.4    1
(AF083077) Carassius auratus putative odorant receptor (GFA1...    44   7.4    1
(AC125346) Mus musculus BAC clone RP24-87B17 from chromosome...    44   7.4    1
(AC120420) Mus musculus chromosome 5, clone RP24-481P22, com...    44   7.4    1
(AC026424) Homo sapiens chromosome 5 clone CTD-2174D2, compl...    44   7.4    1
(AC010245) Homo sapiens chromosome 5 clone CTC-366B18, compl...    44   7.4    1
(AC008488) Homo sapiens chromosome 5 clone CTC-424O12, compl...    44   7.4    1
(AC006149) Homo sapiens PAC clone RP5-1078A23 from 7, comple...    44   7.4    1
(AC123318) Rattus norvegicus clone CH230-167F20, *** SEQUENC...    44   7.4    1
(AC114107) Rattus norvegicus clone CH230-23I11, *** SEQUENCI...    44   7.4    1
(AC096177) Rattus norvegicus clone CH230-11D4, *** SEQUENCIN...    44   7.4    1
(AC094311) Rattus norvegicus clone CH230-3G7, WORKING DRAFT ...    44   7.4    1
(EJ121269) 1092343373723 Global-Ocean-Sampling_GS-27-01-01-1...    44   7.4    1
(DH697189) Rattus norvegicus DNA, BAC clone: RNB1-256A22, 3'...    44   7.4    1
(DE946371) Macropus eugenii DNA, BAC clone: MEB1-142L20_F, 5...    44   7.4    1
(EL830022) CBWN11790.b1 NICHD_XGC_tropTe1 Xenopus (Silurana)...    44   7.4    1
(DB752895) Apis mellifera head cDNA, RIKEN full-length enric...    44   7.4    1
(DB750557) Apis mellifera head cDNA, RIKEN full-length enric...    44   7.4    1
(DB743374) Apis mellifera head cDNA, RIKEN full-length enric...    44   7.4    1
(DB742637) Apis mellifera head cDNA, RIKEN full-length enric...    44   7.4    1
(DB738700) Apis mellifera head cDNA, RIKEN full-length enric...    44   7.4    1
(DB738429) Apis mellifera head cDNA, RIKEN full-length enric...    44   7.4    1
(DB736324) Apis mellifera head cDNA, RIKEN full-length enric...    44   7.4    1
(DB735796) Apis mellifera head cDNA, RIKEN full-length enric...    44   7.4    1
(DB734272) Apis mellifera head cDNA, RIKEN full-length enric...    44   7.4    1
(DB730213) Apis mellifera head cDNA, RIKEN full-length enric...    44   7.4    1
(CX963220) JGI_CAAO12362.fwd NIH_XGC_tropTe5 Xenopus (Silura...    44   7.4    1
(CX935220) JGI_CAAO4254.fwd NIH_XGC_tropTe5 Xenopus (Siluran...    44   7.4    1
(CX932271) JGI_CAAO2234.fwd NIH_XGC_tropTe5 Xenopus (Siluran...    44   7.4    1
(CT770150) Paramecium tetraurelia 5-PRIME EST from clone LK0...    44   7.4    1
(CT744445) Paramecium tetraurelia 5-PRIME EST from clone LK0...    44   7.4    1
(CJ743420) Ipomoea nil cDNA clone:jmsf27b08, 5' end.               44   7.4    1
(BI509738) BB170019B10C07.5 Bee Brain Normalized/Subtracted ...    44   7.4    1
(ES673408) CCAX1074.b1 NICHD_XGC_tropEye1 Xenopus (Silurana)...    44   7.4    1
(AC219204) Solanum lycopersicum chromosome 6 clone C06HBa002...    42   7.6    2
(AC147119) Pan troglodytes BAC clone CH251-518N19 from Y, co...    40   8.0    4
(AC146333) Medicago truncatula clone mth2-8d3, complete sequ...    34   9.7    5

>(C84107) Dictyostelium discoideum slug cDNA, clone SSC788.
          Length = 619

 Score =  533 bits (269), Expect(4) = 0.0
 Identities = 271/272 (99%)
 Strand = Plus / Plus


Query: 116 aatgagaggaagatattattatccagctaaagttaatagaaagagtgcatcacatatnac 175
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 1   aatgagaggaagatattattatccagctaaagttaatagaaagagtgcatcacatatcac 60


Query: 176 attaattaaaaacacagcaatgaatacatttcaaaatatagaggaagcaactgatgaaga 235
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  attaattaaaaacacagcaatgaatacatttcaaaatatagaggaagcaactgatgaaga 120


Query: 236 aatctacaatagaatgtacgcagccagacaaagagagaaaatgttgaaaacaagtgcttt 295
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 aatctacaatagaatgtacgcagccagacaaagagagaaaatgttgaaaacaagtgcttt 180


Query: 296 cgttcaatcctttttgggtatggctggtcaaagttaccaaaaagcattacaaaaacatgg 355
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 cgttcaatcctttttgggtatggctggtcaaagttaccaaaaagcattacaaaaacatgg 240


Query: 356 tttaacttcaagtgatggtacttttgaatata 387
           ||||||||||||||||||||||||||||||||
Sbjct: 241 tttaacttcaagtgatggtacttttgaatata 272

 Score =  129 bits (65), Expect(4) = 0.0
 Identities = 65/65 (100%)
 Strand = Plus / Plus


Query: 450 caaaatggcgaagaagaggataattctgatactgaagatgaagaagaacaacaattaaaa 509
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 caaaatggcgaagaagaggataattctgatactgaagatgaagaagaacaacaattaaaa 394


Query: 510 caact 514
           |||||
Sbjct: 395 caact 399

 Score = 79.8 bits (40), Expect(4) = 0.0
 Identities = 40/40 (100%)
 Strand = Plus / Plus


Query: 692 caactgttctcataaataattcattcatttaaattattca 731
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 caactgttctcataaataattcattcatttaaattattca 608

 Score = 69.9 bits (35), Expect(4) = 0.0
 Identities = 35/35 (100%)
 Strand = Plus / Plus


Query: 638 gattttgaagattctgaataaaactaaatagtaac 672
           |||||||||||||||||||||||||||||||||||
Sbjct: 515 gattttgaagattctgaataaaactaaatagtaac 549

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 102105510
Number of Hits to DB: 687,397,160
Number of extensions: 45183708
Number of successful extensions: 3791552
Number of sequences better than 10.0: 71
Length of query: 731
Length of database: 101,790,757,118
Length adjustment: 24
Effective length of query: 707
Effective length of database: 99,340,224,878
Effective search space: 70233538988746
Effective search space used: 70233538988746
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7.31
Homology vs Protein 
Query= Contig-U04777-1 (Contig-U04777-1Q) /CSM_Contig/Contig-U04777-1Q.Seq.d
         (731 letters)

Database: nrp_A
           3,268,448 sequences; 1,061,185,681 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP001614_3830(CP001614|pid:none) Teredinibacter turnerae T7901, ...    35   3.2
AE014188_417(AE014188|pid:none) Plasmodium falciparum 3D7 chromo...    33   9.2
AM398681_1484(AM398681|pid:none) Flavobacterium psychrophilum JI...    33   9.2

>CP001614_3830(CP001614|pid:none) Teredinibacter turnerae T7901,
           complete genome.
          Length = 897

 Score = 34.7 bits (78), Expect = 3.2
 Identities = 19/64 (29%), Positives = 31/64 (48%)
 Frame = +3

Query: 138 PAKVNRKSASHXTLIKNTAMNTFQNIEEATDEEIYNRMYAARQREKMLKTSAFVQSFLGM 317
           P K+ +++ +   L K+   N FQ   EA D+E   R++ ARQ    L+   F   +  +
Sbjct: 600 PEKLMKQADAALYLAKSEGKNNFQLFNEALDKEAKKRVFMARQTRSALRHKRFFLEYQPL 659

Query: 318 AGQS 329
           A  S
Sbjct: 660 ANIS 663

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3268448
Number of Hits to DB: 637,532,264
Number of extensions: 9432347
Number of successful extensions: 32137
Number of sequences better than 10.0: 3
Number of HSP's gapped: 32131
Number of HSP's successfully gapped: 3
Length of query: 243
Length of database: 1,061,185,681
Length adjustment: 125
Effective length of query: 118
Effective length of database: 652,629,681
Effective search space: 77010302358
Effective search space used: 77010302358
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 31 (16.5 bits)
PSORT 

 psg: 0.63  gvh: 0.27  alm: 0.50  top: 0.53  tms: 0.00  mit: 0.47  mip: 0.08
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 60.0 %: mitochondrial
	 20.0 %: nuclear
	 12.0 %: cytoplasmic
	  4.0 %: cytoskeletal
	  4.0 %: endoplasmic reticulum

>> prediction for Contig-U04777-1 is mit
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 1
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0