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Dicty_cDB
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U04768-1
Contig ID Contig-U04768-1
Contig update 2001. 8.29
Contig sequence 
>Contig-U04768-1 (Contig-U04768-1Q) /CSM_Contig/Contig-U04768-1Q.Seq.d
AAAGTCTTATTTGTTTAAAAAAAAAAAAAAAAAATAAAAAACTTTATTCT
TATTAAAATTTATATTGAATAAAATATAATAAGTATTTAAAAAATTTTTA
AAAAATGGTTATGATGCACGATGAATATATTTCACCCACAAAACTACAAT
TTGGTTTTATGATTGCAGTTGCATTTCTAGGTACTATAGGTGTAATGGGA
TTTTGTCAAAATGTATTTGATATTTTATTAGGTGTTATAAGTATTCTCTC
AATTTATATTGGTATGAGAGGTGTTTGGAAAAGAAAGAAAAGATGGTTAT
TTGTTTTTATGTGGCTTATGATGGGTATGGGATTTTTACATTTAGTATCA
TTTGCAGTTGTAGTTATTCTTCATCATAAAAACCCAACTAAAAATACTGT
TTTTGGATTCGTACCAGATATTGTAATTGATATTTTTAGAGCAGTATATT
GTTTTGGTTTATCATTTTTCACAGGTTTTATTAGAAATACAGTAGAATAT
AGAAGACCAACCACTCAAATGAATCGTATTTAAAGCAAAACAAAAATTGA
AAACAAAAATTGAAAAAAAAAAAAAAAAAAAAAAAAAAATCTATTTACAT
ATATATATAACAAGTCTCAAAAGTAACATATGGAGGAATTAAAATTGTAC
AAACACTCTCGCAAAATTTAAATTTAAAAAATAATTATAATAAAAATAGT
TATTTAAATATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA
Gap no gap
Contig length 762
Chromosome number (1..6, M) 6
Chromosome length 3595308
Start point 2607190
End point 2606476
Strand (PLUS/MINUS) MINUS
Number of clones 3
Number of EST 3
Link to clone list U04768
List of clone(s) 

est1=SSC743E,1,564
est2=VSJ487Z,26,436
est3=SSM806F,311,763
Translated Amino Acid sequence 
sliclkkkkknkklysy*nly*ikynkylknf*KMVMMHDEYISPTKLQFGFMIAVAFLG
TIGVMGFCQNVFDILLGVISILSIYIGMRGVWKRKKRWLFVFMWLMMGMGFLHLVSFAVV
VILHHKNPTKNTVFGFVPDIVIDIFRAVYCFGLSFFTGFIRNTVEYRRPTTQMNRI*skt
kienkn*kkkkkkkknlftyiynksqk*hmeelklykhsrki*i*kiiiikivi*i*kkk
kkkkkkkkkkkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
kvlfv*kkkkkiknfilikiyie*niisi*kifkkwl*ctmnifhpqnynlvl*lqlhf*
vl*v*wdfvkmylify*vl*vfsqfilv*evfgkerkdgylflcgl*wvwdfyi*yhlql
*lffiiktqlkilfldsyqil*lifleqyivlvyhfsqvlleiq*niedqplk*ivfkak
qklktkiekkkkkkkkiylhiyitslksniwrn*nctntlakfkfkk*l**k*lfkykkk
kkkkkkkkkkkkkk


Frame B:
ksylfkkkkkk*ktlfllkfilnki**vfkkflkngydar*iyfthkttiwfydcscisr
yyrcngilskci*yfircykyslnlywyerclekkekmvicfyvaydgygiftfsiicsc
sysss*kpn*kycfwirtrycn*yf*ssilfwfiifhrfy*kysri*ktnhsnesylkqn
kn*kqklkkkkkkkkksiyiyi*qvskvtyggikivqtlsqnlnlknnynknsylnikkk
kkkkkkkkkkkkk


Frame C:
sliclkkkkknkklysy*nly*ikynkylknf*KMVMMHDEYISPTKLQFGFMIAVAFLG
TIGVMGFCQNVFDILLGVISILSIYIGMRGVWKRKKRWLFVFMWLMMGMGFLHLVSFAVV
VILHHKNPTKNTVFGFVPDIVIDIFRAVYCFGLSFFTGFIRNTVEYRRPTTQMNRI*skt
kienkn*kkkkkkkknlftyiynksqk*hmeelklykhsrki*i*kiiiikivi*i*kkk
kkkkkkkkkkkkk
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U04768-1 (Contig-U04768-1Q)
/CSM_Contig/Contig-U04768-1Q.Seq.d
         (762 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U04768-1 (Contig-U04768-1Q) /CSM_Contig/Conti...   852  0.0
Contig-U06117-1 (Contig-U06117-1Q) /CSM_Contig/Conti...    36  0.053
Contig-U13031-1 (Contig-U13031-1Q) /CSM_Contig/Conti...    34  0.21
Contig-U12194-1 (Contig-U12194-1Q) /CSM_Contig/Conti...    34  0.21
Contig-U11800-1 (Contig-U11800-1Q) /CSM_Contig/Conti...    34  0.21
Contig-U09407-1 (Contig-U09407-1Q) /CSM_Contig/Conti...    34  0.21
Contig-U08442-1 (Contig-U08442-1Q) /CSM_Contig/Conti...    34  0.21
Contig-U05906-1 (Contig-U05906-1Q) /CSM_Contig/Conti...    34  0.21
Contig-U04634-1 (Contig-U04634-1Q) /CSM_Contig/Conti...    34  0.21
Contig-U03567-1 (Contig-U03567-1Q) /CSM_Contig/Conti...    34  0.21

>Contig-U04768-1 (Contig-U04768-1Q) /CSM_Contig/Contig-U04768-1Q.Seq.d
          Length = 762

 Score =  852 bits (430), Expect = 0.0
 Identities = 430/430 (100%)
 Strand = Plus / Plus

                                                                       
Query: 107 ggttatgatgcacgatgaatatatttcacccacaaaactacaatttggttttatgattgc 166
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 107 ggttatgatgcacgatgaatatatttcacccacaaaactacaatttggttttatgattgc 166

                                                                       
Query: 167 agttgcatttctaggtactataggtgtaatgggattttgtcaaaatgtatttgatatttt 226
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 167 agttgcatttctaggtactataggtgtaatgggattttgtcaaaatgtatttgatatttt 226

                                                                       
Query: 227 attaggtgttataagtattctctcaatttatattggtatgagaggtgtttggaaaagaaa 286
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 227 attaggtgttataagtattctctcaatttatattggtatgagaggtgtttggaaaagaaa 286

                                                                       
Query: 287 gaaaagatggttatttgtttttatgtggcttatgatgggtatgggatttttacatttagt 346
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 gaaaagatggttatttgtttttatgtggcttatgatgggtatgggatttttacatttagt 346

                                                                       
Query: 347 atcatttgcagttgtagttattcttcatcataaaaacccaactaaaaatactgtttttgg 406
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 atcatttgcagttgtagttattcttcatcataaaaacccaactaaaaatactgtttttgg 406

                                                                       
Query: 407 attcgtaccagatattgtaattgatatttttagagcagtatattgttttggtttatcatt 466
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 attcgtaccagatattgtaattgatatttttagagcagtatattgttttggtttatcatt 466

                                                                       
Query: 467 tttcacaggttttattagaaatacagtagaatatagaagaccaaccactcaaatgaatcg 526
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 tttcacaggttttattagaaatacagtagaatatagaagaccaaccactcaaatgaatcg 526

                     
Query: 527 tatttaaagc 536
           ||||||||||
Sbjct: 527 tatttaaagc 536


 Score =  145 bits (73), Expect = 8e-35
 Identities = 73/73 (100%)
 Strand = Plus / Plus

                                                                       
Query: 590 tctatttacatatatatataacaagtctcaaaagtaacatatggaggaattaaaattgta 649
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 590 tctatttacatatatatataacaagtctcaaaagtaacatatggaggaattaaaattgta 649

                        
Query: 650 caaacactctcgc 662
           |||||||||||||
Sbjct: 650 caaacactctcgc 662


 Score = 32.2 bits (16), Expect = 0.84
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                          
Query: 1  aaagtcttatttgttt 16
          ||||||||||||||||
Sbjct: 1  aaagtcttatttgttt 16


>Contig-U06117-1 (Contig-U06117-1Q) /CSM_Contig/Contig-U06117-1Q.Seq.d
          Length = 966

 Score = 36.2 bits (18), Expect = 0.053
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 592 tatttacatatatatata 609
           ||||||||||||||||||
Sbjct: 951 tatttacatatatatata 934


>Contig-U13031-1 (Contig-U13031-1Q) /CSM_Contig/Contig-U13031-1Q.Seq.d
          Length = 275

 Score = 34.2 bits (17), Expect = 0.21
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                            
Query: 277 ggaaaagaaagaaaaga 293
           |||||||||||||||||
Sbjct: 156 ggaaaagaaagaaaaga 172


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8266
Number of Sequences: 6905
Number of extensions: 8266
Number of successful extensions: 848
Number of sequences better than 10.0: 82
length of query: 762
length of database: 5,674,871
effective HSP length: 16
effective length of query: 746
effective length of database: 5,564,391
effective search space: 4151035686
effective search space used: 4151035686
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2009. 6.30
Homology vs DNA 
Query= Contig-U04768-1 (Contig-U04768-1Q) /CSM_Contig/Contig-U04768-1Q.Seq.d
         (762 letters)

Database: ddbj_A
           102,105,510 sequences; 101,790,757,118 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(C84087) Dictyostelium discoideum slug cDNA, clone SSC743.        835   0.0    1
(AU270001) Dictyostelium discoideum vegetative cDNA clone:VS...   626   e-175  1
(AU075046) Dictyostelium discoideum slug cDNA, clone SSM806.      426   e-115  1
(AU071920) Dictyostelium discoideum slug cDNA, clone SSC743.      266   7e-69  2
(AC186443) Microcebus murinus clone CH257-185B14, WORKING DR...    50   0.13   1
(EH746776) CNMS6245.b1_J01.ab1 CNM(LMS) spotted knapweed Cen...    50   0.13   1
(EH740892) CNMS14128.b1_P04.ab1 CNM(LMS) spotted knapweed Ce...    50   0.13   1
(EH740513) CNMS13783.b1_N14.ab1 CNM(LMS) spotted knapweed Ce...    50   0.13   1
(BV421331) S229P6236FC9.T0 GermanShepherd Canis familiaris S...    48   0.50   1
(AL592444) Human DNA sequence from clone RP11-178P20 on chro...    48   0.50   1
(AC193896) Pan troglodytes chromosome 6 clone CH251-534C13, ...    48   0.50   1
(AC113331) Homo sapiens chromosome 11, clone CTD-3048C22, co...    42   0.63   3
(AL590679) Human DNA sequence *** SEQUENCING CANCELLED *** f...    40   0.75   3
(AL445675) Human DNA sequence from clone RP11-498M14 on chro...    40   0.86   3
(BX927184) Zebrafish DNA sequence from clone DKEY-125I20 in ...    42   0.89   5
(AC197573) Zea mays chromosome 5 clone CH201-387E14, *** SEQ...    44   0.92   3
(AL590419) Human DNA sequence *** SEQUENCING CANCELLED *** f...    42   1.1    4
(BU793998) SJF2BVF04 SJF Schistosoma japonicum cDNA, mRNA se...    36   1.1    3
(DE911573) Macropus eugenii DNA, BAC clone: MEB1-095D11_F, 5...    36   1.4    2
(BV952710) pRRL2:Newb:20080411:332854 USMARC Pig Breed SNP D...    36   1.6    3
(AC090893) Homo sapiens chromosome 11, clone RP11-390G21, co...    42   1.6    4
(AL929457) Zebrafish DNA sequence from clone CH211-153I8 in ...    40   1.7    6
(AC226347) Homo sapiens FOSMID clone ABC14-1185122E5 from ch...    46   2.0    1
(AC133961) Homo sapiens BAC clone RP13-494C23 from 4, comple...    46   2.0    1
(AC093789) Homo sapiens BAC clone RP11-219G10 from 4, comple...    46   2.0    1
(AC027696) Homo sapiens chromosome 4 clone RP11-174N10 map 4...    46   2.0    1
(AC232598) Lama pacos clone CH246-328P17, WORKING DRAFT SEQU...    46   2.0    1
(ET322460) S0264H04_T7 CHORI-214 Salmo salar genomic clone S...    46   2.0    1
(CC298112) CH261-178F9_Sp6.1 CH261 Gallus gallus genomic clo...    46   2.0    1
(DN517997) 1258626 MARC 7BOV Bos taurus cDNA 3', mRNA sequence.    46   2.0    1
(CR847795) Human DNA sequence *** SEQUENCING CANCELLED *** f...    34   2.2    7
(BM004453) TgESTzya86e03.y1 TgVEG Partially sporulated oocys...    34   2.5    2
(AC150909) Pan troglodytes BAC clone CH251-1056O7 from chrom...    40   3.3    2
(AC189508) Brassica rapa subsp. pekinensis clone KBrB088I08,...    40   3.4    4
(FP091237) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   3.4    5
(BS000654) Pan troglodytes chromosome Y clone:PTB-129E12, co...    40   3.6    2
(EJ204124) 1092344323210 Global-Ocean-Sampling_GS-27-01-01-1...    34   4.5    2
(AC027510) Homo sapiens chromosome 18, clone RP11-118I2, com...    38   4.5    6
(CT025906) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    42   4.6    3
(ER941726) AF__Bb0069P04f AF__Bb Aquilegia formosa genomic, ...    34   4.9    2
(CL508590) SAIL_7_B05.v1 SAIL Collection Arabidopsis thalian...    38   5.2    2
(EJ311747) 1095403010307 Global-Ocean-Sampling_GS-27-01-01-1...    40   5.4    2
(CT971503) Zebrafish DNA sequence *** SEQUENCING CANCELLED *...    36   5.8    7
(GC700180) Sequence 15425 from patent US 6812339.                  40   5.8    4
(Z82207) Human DNA sequence *** SEQUENCING CANCELLED *** fro...    40   6.0    4
(FB596838) Sequence 12561 from Patent WO2004081186.                40   6.3    4
(AC185090) Bos taurus clone CH240-182C3, WORKING DRAFT SEQUE...    40   6.6    4
(AE014303) Homo sapiens chromosome 13q34 schizophrenia regio...    40   6.6    4
(AL160153) Human DNA sequence from clone RP11-397O8 on chrom...    40   6.7    5
(AC205045) Pongo abelii BAC clone CH276-259E10 from chromoso...    40   6.7    5
(CU463077) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    36   7.0    4
(BX248522) Zebrafish DNA sequence from clone CH211-113B2 in ...    32   7.0    5
(AL844506) Plasmodium falciparum chromosome  7.                    38   7.2    5
(U41536) Caenorhabditis elegans cosmid F56E3, complete seque...    34   7.2    3
(AC098702) Felis catus clone RP86-555C22, WORKING DRAFT SEQU...    40   7.2    3
(CT573161) Zebrafish DNA sequence from clone CH73-380N15 in ...    32   7.6    6
(AC102369) Mus musculus chromosome 12, clone RP23-246F14, co...    44   7.8    1
(CT990552) N.leucogenys DNA sequence from clone CH271-263K8.       44   7.8    1
(AM453048) Vitis vinifera contig VV78X078738.30, whole genom...    44   7.8    1
(CQ573941) Sequence 1699 from Patent WO0171042.                    44   7.8    1
(EU787495) Hydra magnipapillata secreted protein (HYM301A) g...    44   7.8    1
(AE014298) Drosophila melanogaster chromosome X, complete se...    44   7.8    1
(AC023743) Drosophila melanogaster X BAC RP98-40O10 (Roswell...    44   7.8    1
(AC023696) Drosophila melanogaster X BAC RP98-17J10 (Roswell...    44   7.8    1
(AL359234) Human chromosome 14 DNA sequence BAC C-2184N20 of...    44   7.8    1
(AL355103) Human chromosome 14 DNA sequence BAC R-624J12 of ...    44   7.8    1
(AL008640) Human DNA sequence from clone SC22CB-33D11 on chr...    44   7.8    1
(AC103794) Homo sapiens chromosome 11, clone CTD-3096P4, com...    44   7.8    1
(AC090052) Homo sapiens 12 BAC RP11-295G12 (Roswell Park Can...    44   7.8    1
(AC160236) Rhinolophus ferrumequinum clone VMRC7-309M18, WOR...    44   7.8    1
(AC159598) Rhinolophus ferrumequinum clone VMRC7-125D19, WOR...    44   7.8    1
(AC156770) Rhinolophus ferrumequinum clone VMRC7-164F5, WORK...    44   7.8    1
(AC149001) Otolemur garnettii clone CH256-191F12, WORKING DR...    44   7.8    1
(AC146997) Arbacia punctulata clone BAP-144G2, WORKING DRAFT...    44   7.8    1
(AC141096) Rattus norvegicus clone CH230-403J16, WORKING DRA...    44   7.8    1
(AC136947) Homo sapiens chromosome 16 clone RP11-454L14, WOR...    44   7.8    1
(AC127970) Rattus norvegicus clone CH230-82M11, *** SEQUENCI...    44   7.8    1
(AC103793) Homo sapiens chromosome 11 clone CTD-2541K17 map ...    44   7.8    1
(AC079965) Homo sapiens chromosome 11 clone CTD-2649A9 map 1...    44   7.8    1
(AC213839) Zea mays chromosome 6 clone CH201-319P10; ZMMBBc0...    44   7.8    1
(AC210617) Zea mays chromosome 4 clone CH201-206O3; ZMMBBc02...    44   7.8    1
(AC201888) Zea mays chromosome 10 clone CH201-465E14; ZMMBBc...    44   7.8    1
(AC191671) Zea mays chromosome 5 clone CH201-117H2; ZMMBBc01...    44   7.8    1
(AC167015) Bos taurus clone CH240-183A7, WORKING DRAFT SEQUE...    44   7.8    1
(AC166896) Rhinolophus ferrumequinum clone VMRC7-351E9, WORK...    44   7.8    1
(AC020124) Drosophila melanogaster, *** SEQUENCING IN PROGRE...    44   7.8    1
(FI473975) CH322-63E01.x CHORI-322 Drosophila melanogaster g...    44   7.8    1
(FI448562) CH322-188K09.x CHORI-322 Drosophila melanogaster ...    44   7.8    1
(EI390907) POTB844TR Solanum tuberosum RHPOTKEY BAC ends Sol...    44   7.8    1
(CG463365) PUIKZ90TD ZM_0.6_1.0_KB Zea mays genomic clone ZM...    44   7.8    1
(CG049027) PUKDK37TB ZM_0.6_1.0_KB Zea mays genomic clone ZM...    44   7.8    1
(BZ670369) PUBCV02TD ZM_0.6_1.0_KB Zea mays genomic clone ZM...    44   7.8    1
(BZ585664) 3590_1_37_1_G09.y_1 3590 - RescueMu Grid M Zea ma...    44   7.8    1
(BZ119685) CH230-264J17.TJ CHORI-230 Segment 2 Rattus norveg...    44   7.8    1
(EH380461) L12-44.4_F06_019.ab1 Marmoset hippocampus normali...    44   7.8    1
(EH233932) JGI_ACAC9447.rev ACAC Phakopsora pachyrhizi TW72-...    44   7.8    1
(EH227266) JGI_ACAC3998.rev ACAC Phakopsora pachyrhizi TW72-...    44   7.8    1
(AI243185) qh40f06.x1 Soares_NFL_T_GBC_S1 Homo sapiens cDNA ...    44   7.8    1
(FC771956) CBBN6773.fwd CBBN Lottia gigantea 3,4,5,6.5d Larv...    44   7.8    1
(FC646879) CAXU8697.fwd CAXU Lottia gigantea from female gon...    44   7.8    1
(AW449140) UI-H-BI3-akg-a-04-0-UI.s1 NCI_CGAP_Sub5 Homo sapi...    44   7.8    1
(CP001072) Helicobacter pylori Shi470, complete genome.            44   7.8    1
(CP000241) Helicobacter pylori HPAG1, complete genome.             44   7.8    1
(AL591605) Human DNA sequence from clone RP11-476G6 on chrom...    38   7.8    4
(AC221401) Bos taurus clone CH240-406D5, WORKING DRAFT SEQUE...    38   8.5    7
(CR752652) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    40   9.4    5
(BU713591) SJAABSB07 Adult SjC 7/94 Schistosoma japonicum cD...    30   9.5    3
(AC218847) Bos taurus clone CH240-292F9, WORKING DRAFT SEQUE...    40   9.5    3
(CU633705) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    42   9.6    5
(AP001116) Homo sapiens genomic DNA, chromosome 21q21.1-q21....    38   9.8    4

>(C84087) Dictyostelium discoideum slug cDNA, clone SSC743.
          Length = 504

 Score =  835 bits (421), Expect = 0.0
 Identities = 424/425 (99%)
 Strand = Plus / Plus


Query: 107 ggttatgatgcacgatgaatatatttcacccacaaaactacaatttggttttatgattgc 166
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47  ggttctgatgcacgatgaatatatttcacccacaaaactacaatttggttttatgattgc 106


Query: 167 agttgcatttctaggtactataggtgtaatgggattttgtcaaaatgtatttgatatttt 226
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 107 agttgcatttctaggtactataggtgtaatgggattttgtcaaaatgtatttgatatttt 166


Query: 227 attaggtgttataagtattctctcaatttatattggtatgagaggtgtttggaaaagaaa 286
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 167 attaggtgttataagtattctctcaatttatattggtatgagaggtgtttggaaaagaaa 226


Query: 287 gaaaagatggttatttgtttttatgtggcttatgatgggtatgggatttttacatttagt 346
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 227 gaaaagatggttatttgtttttatgtggcttatgatgggtatgggatttttacatttagt 286


Query: 347 atcatttgcagttgtagttattcttcatcataaaaacccaactaaaaatactgtttttgg 406
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 atcatttgcagttgtagttattcttcatcataaaaacccaactaaaaatactgtttttgg 346


Query: 407 attcgtaccagatattgtaattgatatttttagagcagtatattgttttggtttatcatt 466
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 attcgtaccagatattgtaattgatatttttagagcagtatattgttttggtttatcatt 406


Query: 467 tttcacaggttttattagaaatacagtagaatatagaagaccaaccactcaaatgaatcg 526
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 tttcacaggttttattagaaatacagtagaatatagaagaccaaccactcaaatgaatcg 466


Query: 527 tattt 531
           |||||
Sbjct: 467 tattt 471

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 102105510
Number of Hits to DB: 753,714,770
Number of extensions: 85234041
Number of successful extensions: 5579696
Number of sequences better than 10.0: 110
Length of query: 762
Length of database: 101,790,757,118
Length adjustment: 24
Effective length of query: 738
Effective length of database: 99,340,224,878
Effective search space: 73313085959964
Effective search space used: 73313085959964
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7.31
Homology vs Protein 
Query= Contig-U04768-1 (Contig-U04768-1Q) /CSM_Contig/Contig-U04768-1Q.Seq.d
         (762 letters)

Database: nrp_A
           3,268,448 sequences; 1,061,185,681 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP000927_2426(CP000927|pid:none) Caulobacter sp. K31, complete g...    39   0.23
CP000875_3903(CP000875|pid:none) Herpetosiphon aurantiacus ATCC ...    39   0.23
BA000028_3113(BA000028|pid:none) Oceanobacillus iheyensis HTE831...    37   0.68
AE005672_98(AE005672|pid:none) Streptococcus pneumoniae TIGR4, c...    36   1.2
CP000919_116(CP000919|pid:none) Streptococcus pneumoniae JJA, co...    36   1.5
FM211187_104(FM211187|pid:none) Streptococcus pneumoniae ATCC 70...    36   1.5
CP000480_4816(CP000480|pid:none) Mycobacterium smegmatis str. MC...    35   2.6
AE005673_1394(AE005673|pid:none) Caulobacter crescentus CB15, co...    35   3.4
CP001340_1465(CP001340|pid:none) Caulobacter crescentus NA1000, ...    35   3.4
CP000943_3087(CP000943|pid:none) Methylobacterium sp. 4-46, comp...    34   4.4
CP000628_1150(CP000628|pid:none) Agrobacterium radiobacter K84 c...    34   4.4
AF078462_1(AF078462|pid:none) Agathis sp. 'Althoff & Thompson 19...    34   4.4
AF078461_1(AF078461|pid:none) Agathis sp. 'Althoff & Thompson 19...    34   5.8
AF078456_1(AF078456|pid:none) Agathis sp. 'Althoff & Thompson 19...    34   5.8
AF078459_1(AF078459|pid:none) Agathis sp. 'Althoff & Thompson 19...    34   5.8
AF078454_1(AF078454|pid:none) Agathis sp. 'Althoff & Thompson 19...    34   5.8
AF078465_1(AF078465|pid:none) Agathis sp. 'Althoff & Thompson 19...    34   5.8
CP000686_432(CP000686|pid:none) Roseiflexus sp. RS-1, complete g...    34   5.8
AF078466_1(AF078466|pid:none) Agathis sp. 'Althoff & Thompson 19...    33   7.6
AF078468_1(AF078468|pid:none) Agathis sp. 'Althoff & Thompson 19...    33   7.6
CP000703_385(CP000703|pid:none) Staphylococcus aureus subsp. aur...    33   9.9
AE014187_451(AE014187|pid:none) Plasmodium falciparum 3D7 chromo...    33   9.9

>CP000927_2426(CP000927|pid:none) Caulobacter sp. K31, complete
           genome.
          Length = 547

 Score = 38.5 bits (88), Expect = 0.23
 Identities = 32/132 (24%), Positives = 59/132 (44%), Gaps = 14/132 (10%)
 Frame = +3

Query: 129 ISPTKLQFGFMIAVAFLGTIGVMGFCQN--------VFDILLGVISILSIYIGMRGVWKR 284
           I+P  + +G+ + +    T  + G  Q           DI L ++ ++ + + +  +WKR
Sbjct: 160 IAPWFVFWGYQLFIVLAATGYLAGATQGREYAEPEWYVDIWLTIVWVVYLLVFLGTIWKR 219

Query: 285 KKRWLFVFMWLMMG----MGFLHLVSFAVVVI--LHHKNPTKNTVFGFVPDIVIDIFRAV 446
           K+  ++V  W  +     +  LHLVS A V +  L+HK+     VF  V D ++  +
Sbjct: 220 KEPHIYVANWFYLAFIVTIALLHLVSNAAVPVGMLNHKS---YGVFSGVQDALVQWWYGH 276

Query: 447 YCFGLSFFTGFI 482
              G     GF+
Sbjct: 277 NAVGFFLTAGFL 288

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3268448
Number of Hits to DB: 926,152,325
Number of extensions: 16411533
Number of successful extensions: 43669
Number of sequences better than 10.0: 22
Number of HSP's gapped: 43069
Number of HSP's successfully gapped: 22
Length of query: 254
Length of database: 1,061,185,681
Length adjustment: 126
Effective length of query: 128
Effective length of database: 649,361,233
Effective search space: 83118237824
Effective search space used: 83118237824
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 31 (16.5 bits)
PSORT 

 psg: 0.75  gvh: 0.57  alm: 0.24  top: 0.37  tms: 0.27  mit: 0.19  mip: 0.00
 nuc: 0.08  erl: 0.00  erm: 0.00  pox: 0.30  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 1.00  m3b: 0.00  m_ : 0.00 

	 32.0 %: endoplasmic reticulum
	 20.0 %: mitochondrial
	 20.0 %: plasma membrane
	  8.0 %: nuclear
	  8.0 %: extracellular, including cell wall
	  4.0 %: vacuolar
	  4.0 %: Golgi
	  4.0 %: vesicles of secretory system

>> prediction for Contig-U04768-1 is end
VS (DIR, S) 1
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 2
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0