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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U04758-1
Contig ID Contig-U04758-1
Contig update 2001. 8.29
Contig sequence 
>Contig-U04758-1 (Contig-U04758-1Q) /CSM_Contig/Contig-U04758-1Q.Seq.d
AAAAAAAAAAATAAGAAAATAAAAATAAAAAATAAAAATAAAAATAAAAA
TAAAAATAAAAATATTACATAGATAATTAAAAATAAACAAAAAACATCAT
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACAATAAAAGGAAAAAACAA
TAACAATTTTTTGTAGGACGGTCAAATTTTGTTCAATTTCTTTTAATATT
ATTTTTTCAACAATTTATATTACTTTAACAATTTTATATAAATAAGAATT
AAAATAAAATAAAAAAAAATCTAAAACCATCATCATTTACCATTTTAACC
TTTTTTAAAATATATTAA
Gap no gap
Contig length 318
Chromosome number (1..6, M) 1
Chromosome length 4919822
Start point 1409399
End point 1409081
Strand (PLUS/MINUS) MINUS
Number of clones 1
Number of EST 1
Link to clone list U04758
List of clone(s) 

est1=SSC683F,1,319
Translated Amino Acid sequence 
kkk*enknkk*k*k*k*k*kyyidn*k*tkniikkkkkkkkkkq*KEKTITIFCRTVKFC
SISFNIIFSTIYITLTILYK*elk*nkkksktiiiyhfnlf*nil
Translated Amino Acid sequence (All Frames) 
Frame A:
kkknkkikiknknknknknknit*iiknkqktsskkkkkkkkknnkrkkq*qffvgrsnf
vqfllilffqqfill*qfyinkn*nkikknlkpssftiltffkiy*


Frame B:
kkkirk*k*kikikikikikilhr*lkinkkhhqkkkkkkkkktikgknnnnfl*dgqil
fnff*yyffnnlyyfnnfi*irikik*kki*nhhhlpf*pflkyi


Frame C:
kkk*enknkk*k*k*k*k*kyyidn*k*tkniikkkkkkkkkkq*KEKTITIFCRTVKFC
SISFNIIFSTIYITLTILYK*elk*nkkksktiiiyhfnlf*nil
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U04758-1 (Contig-U04758-1Q)
/CSM_Contig/Contig-U04758-1Q.Seq.d
         (318 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U04758-1 (Contig-U04758-1Q) /CSM_Contig/Conti...   234  5e-62
Contig-U09625-1 (Contig-U09625-1Q) /CSM_Contig/Conti...    38  0.006
Contig-U04842-1 (Contig-U04842-1Q) /CSM_Contig/Conti...    38  0.006
Contig-U09457-1 (Contig-U09457-1Q) /CSM_Contig/Conti...    36  0.022
Contig-U09382-1 (Contig-U09382-1Q) /CSM_Contig/Conti...    36  0.022
Contig-U08180-1 (Contig-U08180-1Q) /CSM_Contig/Conti...    36  0.022
Contig-U01997-1 (Contig-U01997-1Q) /CSM_Contig/Conti...    36  0.022
Contig-U14031-1 (Contig-U14031-1Q) /CSM_Contig/Conti...    34  0.086
Contig-U12968-1 (Contig-U12968-1Q) /CSM_Contig/Conti...    34  0.086

>Contig-U04758-1 (Contig-U04758-1Q) /CSM_Contig/Contig-U04758-1Q.Seq.d
          Length = 318

 Score =  234 bits (118), Expect = 5e-62
 Identities = 118/118 (100%)
 Strand = Plus / Plus

                                                                       
Query: 132 caataaaaggaaaaaacaataacaattttttgtaggacggtcaaattttgttcaatttct 191
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 132 caataaaaggaaaaaacaataacaattttttgtaggacggtcaaattttgttcaatttct 191

                                                                     
Query: 192 tttaatattattttttcaacaatttatattactttaacaattttatataaataagaat 249
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 192 tttaatattattttttcaacaatttatattactttaacaattttatataaataagaat 249


 Score = 97.6 bits (49), Expect = 7e-21
 Identities = 49/49 (100%)
 Strand = Plus / Plus

                                                            
Query: 270 tctaaaaccatcatcatttaccattttaaccttttttaaaatatattaa 318
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 tctaaaaccatcatcatttaccattttaaccttttttaaaatatattaa 318


>Contig-U09625-1 (Contig-U09625-1Q) /CSM_Contig/Contig-U09625-1Q.Seq.d
          Length = 1204

 Score = 38.2 bits (19), Expect = 0.006
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 135 taaaaggaaaaaacaataacaat 157
           ||||| |||||||||||||||||
Sbjct: 29  taaaaagaaaaaacaataacaat 51


>Contig-U04842-1 (Contig-U04842-1Q) /CSM_Contig/Contig-U04842-1Q.Seq.d
          Length = 606

 Score = 38.2 bits (19), Expect = 0.006
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 179 ttgttcaatttcttttaat 197
           |||||||||||||||||||
Sbjct: 400 ttgttcaatttcttttaat 382


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7605
Number of Sequences: 6905
Number of extensions: 7605
Number of successful extensions: 924
Number of sequences better than 10.0: 342
length of query: 318
length of database: 5,674,871
effective HSP length: 15
effective length of query: 303
effective length of database: 5,571,296
effective search space: 1688102688
effective search space used: 1688102688
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)
dna update 2009. 6.30
Homology vs DNA 
Query= Contig-U04758-1 (Contig-U04758-1Q) /CSM_Contig/Contig-U04758-1Q.Seq.d
         (318 letters)

Database: ddbj_A
           102,105,510 sequences; 101,790,757,118 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ329644) Dictyostelium discoideum cDNA clone:dda25c21, 5' ...    66   8e-07  1
(AC198709) Macaca mulatta chromosome 16 clone CH250-13G2, WO...    50   0.050  1
(AC194814) Macaca mulatta clone CH250-77A2, WORKING DRAFT SE...    50   0.050  1
(AC183528) Pan troglodytes BAC clone CH251-737P22 from chrom...    48   0.20   1
(AC183376) Pan troglodytes BAC clone CH251-735O6 from chromo...    48   0.20   1
(AL356259) Human DNA sequence from clone RP11-385E5 on chrom...    48   0.20   1
(AC019099) Homo sapiens BAC clone RP11-428D10 from Y, comple...    48   0.20   1
(AC018742) Homo sapiens BAC clone RP11-644J14 from 2, comple...    48   0.20   1
(AC157424) Bos taurus clone CH240-70F7, WORKING DRAFT SEQUEN...    48   0.20   1
(AC084868) Homo sapiens chromosome RPCI-11 clone RP11-428B10...    48   0.20   1
(AC084349) Homo sapiens chromosome UNK clone RP11-247B3, WOR...    48   0.20   1
(AL590046) Human DNA sequence *** SEQUENCING CANCELLED *** f...    48   0.20   1
(AL450318) Human DNA sequence *** SEQUENCING CANCELLED *** f...    48   0.20   1
(AC224705) Bos taurus clone CH240-478F16, WORKING DRAFT SEQU...    48   0.20   1
(CU208620) Equus caballus GSS, BAC clone CH241-325G2, T7 end...    48   0.20   1
(CU208472) Equus caballus GSS, BAC clone CH241-325H1, T7 end...    48   0.20   1
(AL238769) Tetraodon nigroviridis genome survey sequence PUC...    36   0.56   2
(FE010907) C0009290L17.P1KM13F KN510 Bos taurus colon/ileum ...    32   0.57   2
(CU914233) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   0.59   2
(AC026172) Homo sapiens chromosome 3 clone RP11-168L3 map 3p...    44   0.60   2
(AC026194) Homo sapiens chromosome 3 clone RP11-45B16 map 3p...    44   0.60   2
(AC068672) Homo sapiens chromosome 8, clone RP11-566H8, comp...    46   0.65   2
(AC200436) Pongo abelii BAC clone CH276-288J22 from chromoso...    46   0.78   1
(AC091602) Homo sapiens BAC clone RP11-655M19 from 4, comple...    46   0.78   1
(AC156920) Bos taurus clone CH240-50P5, WORKING DRAFT SEQUEN...    46   0.78   1
(AC225849) Saimiri boliviensis boliviensis clone CH254-434A1...    46   0.78   1
(AC219267) Bos taurus clone CH240-334O1, WORKING DRAFT SEQUE...    46   0.78   1
(AC209486) Saimiri boliviensis boliviensis clone CH254-244B1...    46   0.78   1
(AC190277) Macaca mulatta clone CH250-127B6, WORKING DRAFT S...    46   0.78   1
(AC012139) Homo sapiens clone RP11-10L15, WORKING DRAFT SEQU...    46   0.78   1
(AG724943) Macaca fuscata fuscata DNA, clone: MSB2-177C10_R,...    46   0.78   1
(AG708628) Macaca fuscata fuscata DNA, clone: MSB2-152E06_F,...    46   0.78   1
(AM013323) Bos sp. 3' EST, clone C0007418k11.                      46   0.78   1
(BE885266) 601506334F1 NIH_MGC_71 Homo sapiens cDNA clone IM...    46   0.78   1
(AC222822) Bos taurus clone CH240-437I1, WORKING DRAFT SEQUE...    34   1.6    2
(AC113238) Felis catus clone RP86-252E8, WORKING DRAFT SEQUE...    42   1.8    2
(AC137914) Felis catus clone RP86-327G21, WORKING DRAFT SEQU...    42   1.9    2
(AC012136) Homo sapiens clone RP11-7M24, WORKING DRAFT SEQUE...    44   2.0    2
(EL556206) EST_otsh_evc_4375 otshevc mixed_tissue Oncorhynch...    32   2.1    2
(EL557132) EST_otsh_evc_5301 otshevc mixed_tissue Oncorhynch...    32   2.2    2
(CR925810) Zebrafish DNA sequence from clone DKEY-250M6 in l...    44   3.1    1
(BV341878) S230P6484RD10.T0 Rottweiler Canis familiaris STS ...    44   3.1    1
(CU463176) Mouse DNA sequence from clone DN-259L18 on chromo...    44   3.1    1
(CU406965) Mouse DNA sequence from clone CH29-21F6 on chromo...    44   3.1    1
(CT025759) Mouse DNA sequence from clone RP24-317H19 on chro...    44   3.1    1
(CT025611) Mouse DNA sequence from clone RP24-100P15 on chro...    44   3.1    1
(AF109906) Mus musculus MHC class III region RD gene, partia...    44   3.1    1
(AF049850) Mus musculus major histocompatibility locus class...    44   3.1    1
(AC102435) Mus musculus chromosome 12, clone RP24-123B22, co...    44   3.1    1
(AC210374) Pongo abelii BAC clone CH276-503I17 from chromoso...    44   3.1    1
(AC206719) Pongo abelii BAC clone CH276-112L12 from chromoso...    44   3.1    1
(AC199225) Pongo abelii BAC clone CH276-441A5 from chromosom...    44   3.1    1
(AC196661) Rhesus Macaque  BAC CH250-178I21 () complete sequ...    44   3.1    1
(AC195100) Rhesus Macaque  BAC CH250-197L19 () complete sequ...    44   3.1    1
(AC189665) Macaca mulatta chromosome UNK clone CH250-7H12, c...    44   3.1    1
(AP008211) Oryza sativa (japonica cultivar-group) genomic DN...    44   3.1    1
(AC147462) Oryza sativa Japonica Group chromosome 5 clone B1...    44   3.1    1
(AC137611) Oryza sativa Japonica Group chromosome 5 clone OS...    44   3.1    1
(EA742672) Sequence 14118 from patent US 7368527.                  44   3.1    1
(DL005601) NUCLEIC ACID PROBES AND NUCLEIC ACID ANALOG PROBES.     44   3.1    1
(CS459526) Sequence 7 from Patent WO2006117596.                    44   3.1    1
(GN008133) Sequence 574 from Patent EP2014669.                     44   3.1    1
(GM887634) Sequence 101 from Patent WO2008137089.                  44   3.1    1
(GM887599) Sequence 66 from Patent WO2008137089.                   44   3.1    1
(GC890064) Sequence 205309 from patent US 6812339.                 44   3.1    1
(GC890063) Sequence 205308 from patent US 6812339.                 44   3.1    1
(GC890062) Sequence 205307 from patent US 6812339.                 44   3.1    1
(GC704264) Sequence 19509 from patent US 6812339.                  44   3.1    1
(GC704263) Sequence 19508 from patent US 6812339.                  44   3.1    1
(GC704262) Sequence 19507 from patent US 6812339.                  44   3.1    1
(GC702299) Sequence 17544 from patent US 6812339.                  44   3.1    1
(GC696686) Sequence 11930 from patent US 6812339.                  44   3.1    1
(GC696582) Sequence 11826 from patent US 6812339.                  44   3.1    1
(Z95152) Human DNA sequence from clone RP1-179N16 on chromos...    44   3.1    1
(EU332860) Homo sapiens mitogen-activated protein kinase 14 ...    44   3.1    1
(EF445042) Homo sapiens ubiquitin conjugation factor E4 A (U...    44   3.1    1
(AP001582) Homo sapiens genomic DNA, chromosome 11q, clone:R...    44   3.1    1
(AP000997) Homo sapiens DNA, chromosome 11q23.2, clone:194K1...    44   3.1    1
(AL805915) Human DNA sequence from clone RP11-118H17 on chro...    44   3.1    1
(AL607035) Human DNA sequence from clone RP11-570G20 on chro...    44   3.1    1
(AL592164) Human DNA sequence from clone RP13-126P21 on chro...    44   3.1    1
(AL356754) Human DNA sequence from clone RP11-11C5 on chromo...    44   3.1    1
(AL354740) Human DNA sequence from clone RP11-513I15 on chro...    44   3.1    1
(AL121782) Human DNA sequence from clone RP4-585I14 on chrom...    44   3.1    1
(AL031120) Human DNA sequence from clone RP3-459L4 on chromo...    44   3.1    1
(AF010238) Homo sapiens von Hippel-Lindau tumor suppressor (...    44   3.1    1
(AC124861) Homo sapiens BAC clone RP11-622A18 from 2, comple...    44   3.1    1
(AC098869) Homo sapiens BAC clone RP11-588L15 from 4, comple...    44   3.1    1
(AC087164) Homo sapiens chromosome 17, clone RP11-258F1, com...    44   3.1    1
(AC069476) Homo sapiens chromosome 11 clone b430h11 map 11, ...    44   3.1    1
(AC069461) Homo sapiens chromosome 3 clone RP11-1022P15 map ...    44   3.1    1
(AC068556) Homo sapiens chromosome 10 clone RP11-415G6, comp...    44   3.1    1
(AC068060) Homo sapiens chromosome 10 clone RP11-359B3, comp...    44   3.1    1
(AC034193) Homo sapiens chromosome 3 clone RP11-572M14 map 3...    44   3.1    1
(AC027119) Homo sapiens chromosome 3 clone RP11-113L10 map 3...    44   3.1    1
(AC024581) Homo sapiens chromosome 5 clone CTD-3066C23, comp...    44   3.1    1
(AC024163) Homo sapiens chromosome 3 clone RP11-326O24 map 3...    44   3.1    1
(AC023159) Homo sapiens 3 BAC CTC-393J18 (CalTech Human BAC ...    44   3.1    1
(AC022916) Homo sapiens chromosome 17, clone RP11-799D4, com...    44   3.1    1
(AC022384) Homo sapiens chromosome 3 clone RP11-438J1 map 3p...    44   3.1    1
(AC022383) Homo sapiens chromosome 3 clone RP11-415K13 map 3...    44   3.1    1
(AC018828) Homo sapiens chromosome 3 clone RP11-382A21 map 3...    44   3.1    1
(AC018808) Homo sapiens chromosome 3 clone RP11-1016H17 map ...    44   3.1    1
(AC008821) Homo sapiens chromosome 5 clone CTD-2129G21, comp...    44   3.1    1
(AC008511) Homo sapiens chromosome 5 clone CTC-454D3, comple...    44   3.1    1
(AC006948) Homo sapiens chromosome 17, clone hRPK.334_M_10, ...    44   3.1    1
(AC004463) Homo sapiens Chromosome 22q11.2 Cosmid Clone 79h1...    44   3.1    1
(AC003950) Homo sapiens chromosome 17, clone hCIT.123_J_14, ...    44   3.1    1
(AC002996) Homo sapiens 12q24 BAC RPCI11-162P23 (Roswell Par...    44   3.1    1
(AC162119) Chlorocebus aethiops clone CH252-339D15, WORKING ...    44   3.1    1
(AC153752) Papio anubis clone RP41-73L22, WORKING DRAFT SEQU...    44   3.1    1
(AC153314) Colobus guereza clone CH272-152O7, WORKING DRAFT ...    44   3.1    1
(AC153302) Macaca mulatta clone CH250-487O14, WORKING DRAFT ...    44   3.1    1
(AC153301) Macaca mulatta clone CH250-271K4, WORKING DRAFT S...    44   3.1    1
(AC149006) Otolemur garnettii clone CH256-554C24, WORKING DR...    44   3.1    1
(AC148639) Callithrix jacchus clone CH259-57P10, WORKING DRA...    44   3.1    1
(AC148629) Callithrix jacchus clone CH259-236K4, WORKING DRA...    44   3.1    1
(AC140562) Macaca mulatta clone CH250-271K4, WORKING DRAFT S...    44   3.1    1
(AC129838) Pan troglodytes clone rp43-75h20, WORKING DRAFT S...    44   3.1    1
(AC106773) Homo sapiens chromosome 5 clone RP11-316O9, WORKI...    44   3.1    1
(FP102989) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   3.1    1
(FP102075) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   3.1    1
(FP017142) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   3.1    1
(FP017136) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   3.1    1
(CU929699) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   3.1    1
(CU928936) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   3.1    1
(CU914221) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   3.1    1
(CU855539) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   3.1    1
(CU694922) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   3.1    1
(CU633570) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   3.1    1
(CU633385) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   3.1    1
(CU606915) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   3.1    1
(CU570673) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   3.1    1
(CU469253) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   3.1    1
(AC074038) Homo sapiens chromosome 17 clone RP11-414C11, WOR...    44   3.1    1
(AC069440) Homo sapiens chromosome 3 clone RP11-1022P15, ***...    44   3.1    1
(AC069337) Homo sapiens chromosome 3 clone RP11-1055P15 map ...    44   3.1    1
(AC055760) Homo sapiens chromosome 3 clone RP11-99D10, WORKI...    44   3.1    1
(CU468333) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   3.1    1
(CU467566) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   3.1    1
(CU407280) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   3.1    1
(CU234205) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   3.1    1
(CU019540) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   3.1    1
(CT954284) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   3.1    1
(AP003556) Homo sapiens genomic DNA, chromosome 11q clone:RP...    44   3.1    1
(AP002792) Homo sapiens genomic DNA, chromosome 11q clone:RP...    44   3.1    1
(AP000809) Homo sapiens genomic DNA, chromosome 11q23 clone:...    44   3.1    1
(AL807235) Human DNA sequence *** SEQUENCING CANCELLED *** f...    44   3.1    1
(AL391096) Human DNA sequence *** SEQUENCING CANCELLED *** f...    44   3.1    1
(AL389882) Human DNA sequence *** SEQUENCING CANCELLED *** f...    44   3.1    1
(AL359537) Human DNA sequence *** SEQUENCING CANCELLED *** f...    44   3.1    1
(AL121971) Human DNA sequence *** SEQUENCING CANCELLED *** f...    44   3.1    1
(AC196339) Callithrix jacchus clone CH259-464I18, WORKING DR...    44   3.1    1
(AC196338) Callithrix jacchus clone CH259-268L5, WORKING DRA...    44   3.1    1
(AC195295) Pan troglodytes chromosome 12 clone CH251-460P19,...    44   3.1    1
(AC195033) Colobus guereza clone CH272-41M11, WORKING DRAFT ...    44   3.1    1
(AC193872) Pan troglodytes chromosome 10 clone CH251-539N13,...    44   3.1    1
(AC191459) Macaca mulatta clone CH250-64F19, WORKING DRAFT S...    44   3.1    1
(AC188500) Aotus nancymaae clone CH258-5L5, WORKING DRAFT SE...    44   3.1    1
(AC184013) Felis catus clone RP86-171I22, WORKING DRAFT SEQU...    44   3.1    1
(AC174846) Aotus nancymaae clone CH258-197F9, WORKING DRAFT ...    44   3.1    1
(AC163245) Papio anubis clone RP41-305P15, WORKING DRAFT SEQ...    44   3.1    1
(AC025405) Homo sapiens chromosome 6 clone RP11-301K23 map 6...    44   3.1    1
(AC023236) Homo sapiens chromosome 3 clone RP11-382A21, WORK...    44   3.1    1
(AC016861) Homo sapiens clone RP11-13N14, LOW-PASS SEQUENCE ...    44   3.1    1
(AC013665) Homo sapiens clone RP11-20E22, WORKING DRAFT SEQU...    44   3.1    1
(AC011585) Homo sapiens clone RP11-13K16, WORKING DRAFT SEQU...    44   3.1    1
(AC008032) Homo sapiens chromosome 3 clone CTC-558E6, WORKIN...    44   3.1    1
(AC004085) Homo sapiens clone RP11-42B1, WORKING DRAFT SEQUE...    44   3.1    1
(AQ355351) CITBI-E1-2533C12.TF CITBI-E1 Homo sapiens genomic...    44   3.1    1
(ER923122) MUGQ_CH252P281P15Sp6_CP411_050 CHORI-252 Vervet M...    44   3.1    1
(AQ109180) CIT-HSP-2377E11.TR CIT-HSP Homo sapiens genomic c...    44   3.1    1
(EI716626) 2B421009I08TR BAC library from breast tumor sampl...    44   3.1    1
(EI047495) hhd0002be03.b1 hhd Oryza coarctata genomic clone ...    44   3.1    1
(ED825887) MUGQ_CH252P156M14Sp6_GL474_051 CHORI-252 Vervet M...    44   3.1    1
(CU193665) Equus caballus GSS, BAC clone CH241-354G14, T7 en...    44   3.1    1
(CU193365) Equus caballus GSS, BAC clone CH241-354I14, T7 en...    44   3.1    1
(CU158572) Equus caballus GSS, BAC clone CH241-296B11, SP6 e...    44   3.1    1
(CU109559) Equus caballus GSS, BAC clone CH241-217E2, SP6 en...    44   3.1    1
(CT284409) Sus scrofa genomic clone CH242-273G7, genomic sur...    44   3.1    1
(AG863351) Oryza sativa Indica Group genomic DNA, BAC end se...    44   3.1    1
(CE415604) tigr-gss-dog-17000362595270 Dog Library Canis lup...    44   3.1    1
(CE289373) tigr-gss-dog-17000333835620 Dog Library Canis lup...    44   3.1    1
(BX982695) Reverse strand read from insert in 5'HPRT inserti...    44   3.1    1
(CX889173) JGI_CAAM2481.rev NIH_XGC_tropTe3 Xenopus (Siluran...    44   3.1    1
(CP000609) Methanococcus maripaludis C5, complete genome.          44   3.1    1
(BX855603) Human DNA sequence *** SEQUENCING IN PROGRESS ***...    42   3.3    2
(AC113348) Homo sapiens chromosome 5 clone CTD-2537M22, comp...    40   3.9    2
(AC195696) Myotis lucifugus clone CH235-92K20, WORKING DRAFT...    40   7.7    2
(EI898929) VUH2-22H10TV VUUBBa (VUH2) Vigna unguiculata geno...    32   7.8    2
(CU855735) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    40   7.8    2
(EI925532) VUH2-65B23TR VUUBBa (VUH2) Vigna unguiculata geno...    32   7.9    2
(AL138706) Human DNA sequence from clone RP11-421P11 on chro...    36   8.5    2
(AC009634) Homo sapiens chromosome 8, clone RP11-413C18, com...    40   8.9    2

>(BJ329644) Dictyostelium discoideum cDNA clone:dda25c21, 5' end,
           single read.
          Length = 325

 Score = 65.9 bits (33), Expect = 8e-07
 Identities = 39/41 (95%)
 Strand = Plus / Plus


Query: 278 catcatcatttaccattttaaccttttttaaaatatattaa 318
           |||||||||||| |||||||| |||||||||||||||||||
Sbjct: 106 catcatcatttaacattttaaacttttttaaaatatattaa 146

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 102105510
Number of Hits to DB: 94,780,547
Number of extensions: 8348346
Number of successful extensions: 811451
Number of sequences better than 10.0: 194
Length of query: 318
Length of database: 101,790,757,118
Length adjustment: 23
Effective length of query: 295
Effective length of database: 99,442,330,388
Effective search space: 29335487464460
Effective search space used: 29335487464460
X1: 11 (21.8 bits)
S2: 21 (42.1 bits)
protein update 2009. 7.31
Homology vs Protein 
Query= Contig-U04758-1 (Contig-U04758-1Q) /CSM_Contig/Contig-U04758-1Q.Seq.d
         (318 letters)

Database: nrp_A
           3,268,448 sequences; 1,061,185,681 total letters

Searching..................................................done

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3268448
Number of Hits to DB: 141,695,530
Number of extensions: 1014165
Number of successful extensions: 2058
Number of sequences better than 10.0: 0
Number of HSP's gapped: 2058
Number of HSP's successfully gapped: 0
Length of query: 106
Length of database: 1,061,185,681
Length adjustment: 74
Effective length of query: 32
Effective length of database: 819,320,529
Effective search space: 26218256928
Effective search space used: 26218256928
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 28 (15.4 bits)
PSORT 

 psg: 0.81  gvh: 0.37  alm: 0.31  top: 0.33  tms: 0.07  mit: 0.43  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 1.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 28.0 %: mitochondrial
	 24.0 %: endoplasmic reticulum
	 16.0 %: cytoplasmic
	 16.0 %: nuclear
	  8.0 %: Golgi
	  4.0 %: plasma membrane
	  4.0 %: vesicles of secretory system

>> prediction for Contig-U04758-1 is mit
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 1
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0