Contig-U04752-1
Contig ID Contig-U04752-1
Contig update 2001. 8.29
Contig sequence
>Contig-U04752-1 (Contig-U04752-1Q) /CSM_Contig/Contig-U04752-1Q.Seq.d
GACAGACATAAATAATAAAAATAATAATAGTGATCATTCTATAACAGTCA
TTGAAGATGAAGCATCTATAATTAAAACTCTTATGGTTACAAGAGGTGAT
CTCGAAAAGGAGCTTGAGTCTTTAATGAACTTCCTAAAGAGTGGCGATGG
TAAAACTTTTGGATTAAAAGGATCATTCACTGATTCTGAAGGTTATCCTT
CTCCACATTTAGAATTAATTATTGAAGTTAAAAAAGCAAGAAGTAGAATT
GCACATATCCAAAATGATTATAAACAAGTAATGAAAGATATTGAATTTCA
TTTAGAAAAGTTACATAAATCACCAACAAATAAAAATCAATCTTCTTCAA
CTTTTTCAATAAATAATACAACATCAACAAGTAATAATAATAATAATGAG
GATGAAATGAAAATTGATAAACCATTAACAGTGGAAACAGAAACAAAACC
AAAACCAATTGAAGTTGAAGTTGAAAAAGTTGGTATTCCATTTGTATATA
TTGATTTAGTTTCAGAAGGATCACCATCTGATAAAGCAAATTTGAAAAAG
GGTGATTTAATTTTCCAATTCGGTACAGTTGGCCCATTTTTTGAAGAGAG
ACAAGTTGGTGATAATTTAAATTCAAACCATCTTCAATCAATTGCTACCA
TAGTACGTAATAGTGAAAACAAACAAAGCAATCCAAATAAAATTATCAAG
AGGTACTTCAATTATTTCAACTTCATTAATTCCTCGTAAATGGAGTGGTC
AAGGATTAATTGGTTGCTTAATTAAACCAATATAGATAAATACCTTCTTT
GATATATATTAGTGTCAAGATAGTTTGTAAAAAAAAA

Gap no gap
Contig length 837
Chromosome number (1..6, M) 2
Chromosome length 8467578
Start point 5825026
End point 5824183
Strand (PLUS/MINUS) MINUS
Number of clones 1
Number of EST 1
Link to clone list U04752
List of clone(s)

est1=SSC651E,1,838
Translated Amino Acid sequence
TDINNKNNNSDHSITVIEDEASIIKTLMVTRGDLEKELESLMNFLKSGDGKTFGLKGSFT
DSEGYPSPHLELIIEVKKARSRIAHIQNDYKQVMKDIEFHLEKLHKSPTNKNQSSSTFSI
NNTTSTSNNNNNEDEMKIDKPLTVETETKPKPIEVEVEKVGIPFVYIDLVSEGSPSDKAN
LKKGDLIFQFGTVGPFFEERQVGDNLNSNHLQSIATIVRNSENKQSNPNKIIKRYFNYFN
FINSS*mewsrinwlln*tnidkyll*yilvsr*fvkk


Translated Amino Acid sequence (All Frames)
Frame A:
drhk**k****sfynsh*r*siyn*nsygykr*srkga*vfnelpkewrw*nfwikriih
*f*rlsfstfriny*s*kskk*nctypk*l*tsnery*isfrkvt*itnk*ksiffnffn
k*ynink******g*nen**tinsgnrnktktn*s*s*kswysiciy*fsfrriti**sk
fekg*fnfpiryswpif*retsw**fkfkpssincyhst***kqtkqsk*nyqevlqlfq
lh*flvngvvkd*lva*lnqyr*ipsliyisvkivckkk


Frame B:
TDINNKNNNSDHSITVIEDEASIIKTLMVTRGDLEKELESLMNFLKSGDGKTFGLKGSFT
DSEGYPSPHLELIIEVKKARSRIAHIQNDYKQVMKDIEFHLEKLHKSPTNKNQSSSTFSI
NNTTSTSNNNNNEDEMKIDKPLTVETETKPKPIEVEVEKVGIPFVYIDLVSEGSPSDKAN
LKKGDLIFQFGTVGPFFEERQVGDNLNSNHLQSIATIVRNSENKQSNPNKIIKRYFNYFN
FINSS*mewsrinwlln*tnidkyll*yilvsr*fvkk


Frame C:
qt*iikiiiviil*qslkmkhl*lkllwlqeviskrslsl**ts*rvamvklld*kdhsl
ilkvillhi*n*llklkkqevelhiskmiink**kilnfi*ksyinhqqikinllqlfq*
iiqhqqviiiimrmk*klinh*qwkqkqnqnqlklklkklvfhlyili*fqkdhhlikqi
*krvi*fsnsvqlahflkrdklvii*iqtifnqllp*yvivktnkaiqiklsrgtsiist
sliprkwsgqgligclikpi*intffdiy*cqdsl*kk


own update 2004. 6.10
Homology vs CSM-cDNA
Query= Contig-U04752-1 (Contig-U04752-1Q)
/CSM_Contig/Contig-U04752-1Q.Seq.d
(837 letters)

Database: CSM
6905 sequences; 5,674,871 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U04752-1 (Contig-U04752-1Q) /CSM_Contig/Conti... 854 0.0
Contig-U10883-1 (Contig-U10883-1Q) /CSM_Contig/Conti... 42 0.001
Contig-U08942-1 (Contig-U08942-1Q) /CSM_Contig/Conti... 42 0.001
Contig-U02182-1 (Contig-U02182-1Q) /CSM_Contig/Conti... 40 0.004
Contig-U14682-1 (Contig-U14682-1Q) /CSM_Contig/Conti... 38 0.015
Contig-U09396-1 (Contig-U09396-1Q) /CSM_Contig/Conti... 38 0.015
Contig-U08312-1 (Contig-U08312-1Q) /CSM_Contig/Conti... 38 0.015
Contig-U14855-1 (Contig-U14855-1Q) /CSM_Contig/Conti... 36 0.059
Contig-U11521-1 (Contig-U11521-1Q) /CSM_Contig/Conti... 36 0.059
Contig-U09239-1 (Contig-U09239-1Q) /CSM_Contig/Conti... 36 0.059

>Contig-U04752-1 (Contig-U04752-1Q) /CSM_Contig/Contig-U04752-1Q.Seq.d
Length = 837

Score = 854 bits (431), Expect = 0.0
Identities = 431/431 (100%)
Strand = Plus / Plus


Query: 398 gaggatgaaatgaaaattgataaaccattaacagtggaaacagaaacaaaaccaaaacca 457
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 gaggatgaaatgaaaattgataaaccattaacagtggaaacagaaacaaaaccaaaacca 457


Query: 458 attgaagttgaagttgaaaaagttggtattccatttgtatatattgatttagtttcagaa 517
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 attgaagttgaagttgaaaaagttggtattccatttgtatatattgatttagtttcagaa 517


Query: 518 ggatcaccatctgataaagcaaatttgaaaaagggtgatttaattttccaattcggtaca 577
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 ggatcaccatctgataaagcaaatttgaaaaagggtgatttaattttccaattcggtaca 577


Query: 578 gttggcccattttttgaagagagacaagttggtgataatttaaattcaaaccatcttcaa 637
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578 gttggcccattttttgaagagagacaagttggtgataatttaaattcaaaccatcttcaa 637


Query: 638 tcaattgctaccatagtacgtaatagtgaaaacaaacaaagcaatccaaataaaattatc 697
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 638 tcaattgctaccatagtacgtaatagtgaaaacaaacaaagcaatccaaataaaattatc 697


Query: 698 aagaggtacttcaattatttcaacttcattaattcctcgtaaatggagtggtcaaggatt 757
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 698 aagaggtacttcaattatttcaacttcattaattcctcgtaaatggagtggtcaaggatt 757


Query: 758 aattggttgcttaattaaaccaatatagataaataccttctttgatatatattagtgtca 817
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 758 aattggttgcttaattaaaccaatatagataaataccttctttgatatatattagtgtca 817


Query: 818 agatagtttgt 828
|||||||||||
Sbjct: 818 agatagtttgt 828


Score = 648 bits (327), Expect = 0.0
Identities = 327/327 (100%)
Strand = Plus / Plus


Query: 30 gtgatcattctataacagtcattgaagatgaagcatctataattaaaactcttatggtta 89
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 30 gtgatcattctataacagtcattgaagatgaagcatctataattaaaactcttatggtta 89


Query: 90 caagaggtgatctcgaaaaggagcttgagtctttaatgaacttcctaaagagtggcgatg 149
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 90 caagaggtgatctcgaaaaggagcttgagtctttaatgaacttcctaaagagtggcgatg 149


Query: 150 gtaaaacttttggattaaaaggatcattcactgattctgaaggttatccttctccacatt 209
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 150 gtaaaacttttggattaaaaggatcattcactgattctgaaggttatccttctccacatt 209


Query: 210 tagaattaattattgaagttaaaaaagcaagaagtagaattgcacatatccaaaatgatt 269
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 210 tagaattaattattgaagttaaaaaagcaagaagtagaattgcacatatccaaaatgatt 269


Query: 270 ataaacaagtaatgaaagatattgaatttcatttagaaaagttacataaatcaccaacaa 329
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 ataaacaagtaatgaaagatattgaatttcatttagaaaagttacataaatcaccaacaa 329


Query: 330 ataaaaatcaatcttcttcaacttttt 356
|||||||||||||||||||||||||||
Sbjct: 330 ataaaaatcaatcttcttcaacttttt 356


>Contig-U10883-1 (Contig-U10883-1Q) /CSM_Contig/Contig-U10883-1Q.Seq.d
Length = 2708

Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus


Query: 457 aattgaagttgaagttgaaaa 477
|||||||||||||||||||||
Sbjct: 702 aattgaagttgaagttgaaaa 722


>Contig-U08942-1 (Contig-U08942-1Q) /CSM_Contig/Contig-U08942-1Q.Seq.d
Length = 1063

Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus


Query: 458 attgaagttgaagttgaaaaa 478
|||||||||||||||||||||
Sbjct: 438 attgaagttgaagttgaaaaa 458


Database: CSM
Posted date: Jun 9, 2004 7:35 PM
Number of letters in database: 5,674,871
Number of sequences in database: 6905

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 13,762
Number of Sequences: 6905
Number of extensions: 13762
Number of successful extensions: 1562
Number of sequences better than 10.0: 177
length of query: 837
length of database: 5,674,871
effective HSP length: 16
effective length of query: 821
effective length of database: 5,564,391
effective search space: 4568365011
effective search space used: 4568365011
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2009. 6.29
Homology vs DNA
Query= Contig-U04752-1 (Contig-U04752-1Q) /CSM_Contig/Contig-U04752-1Q.Seq.d
(837 letters)

Database: ddbj_A
102,105,510 sequences; 101,790,757,118 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(AC115598) Dictyostelium discoideum chromosome 2 map 581427-... 500 0.0 5
(C84077) Dictyostelium discoideum slug cDNA, clone SSC651. 500 0.0 2
(AU071862) Dictyostelium discoideum slug cDNA, clone SSC651. 418 e-112 1
(AE013218) Buchnera aphidicola str. Sg (Schizaphis graminum)... 38 0.098 15
(CR933734) Zebrafish DNA sequence from clone DKEY-287I17 in ... 50 0.14 1
(AC120339) Mus musculus chromosome 14, clone RP23-126A8, com... 50 0.14 1
(AM487207) Vitis vinifera contig VV78X135943.9, whole genome... 50 0.14 1
(CU783002) A BAC library has been constructed from PN40024 g... 50 0.14 1
(EX900225) RS2C456JQ RS2(RS) Raphanus sativus cDNA 3', mRNA ... 50 0.14 1
(AC119178) Mus musculus clone RP24-216L18, WORKING DRAFT SEQ... 48 0.29 2
(AL929012) Mouse DNA sequence from clone RP23-477G20 on chro... 48 0.33 2
(AC172818) Bos taurus clone CH240-308K3, WORKING DRAFT SEQUE... 38 0.44 6
(AC157780) Mus musculus chromosome 3, clone RP23-331L5, comp... 48 0.55 1
(AC135720) Mus musculus chromosome 15, clone RP24-298F20, co... 48 0.55 1
(AC102104) Mus musculus chromosome 15, clone RP23-85P16, com... 48 0.55 1
(AM486499) Vitis vinifera contig VV78X157136.7, whole genome... 48 0.55 1
(AC133641) Homo sapiens chromosome 8 clone CTD-2116E20 map 8... 48 0.55 1
(AC107318) Sus scrofa clone RP44-137G11, WORKING DRAFT SEQUE... 48 0.55 1
(CU466507) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 48 0.55 1
(AC190445) Nomascus leucogenys leucogenys clone CH271-306B20... 48 0.55 1
(AK169352) Mus musculus 17 days pregnant adult female amnion... 48 0.55 1
(AK143579) Mus musculus 6 days neonate spleen cDNA, RIKEN fu... 48 0.55 1
(AK011205) Mus musculus 10 days embryo whole body cDNA, RIKE... 48 0.55 1
(BX989767) Forward strand read from insert in 3'HPRT inserti... 48 0.55 1
(CK128582) AGENCOURT_16688660 NIH_MGC_203 Mus musculus cDNA ... 48 0.55 1
(CB589872) AGENCOURT_12566771 NIH_MGC_136 Mus musculus cDNA ... 48 0.55 1
(CB588560) AGENCOURT_12605869 NIH_MGC_136 Mus musculus cDNA ... 48 0.55 1
(CB321580) AGENCOURT_12237985 NIH_MGC_136 Mus musculus cDNA ... 48 0.55 1
(CB317611) AGENCOURT_12397983 NIH_MGC_165 Mus musculus cDNA ... 48 0.55 1
(BY725040) Mus musculus 7 days neonate cerebellum cDNA, RIKE... 48 0.55 1
(BX517421) RZPD Mus musculus cDNA clone IMAGp998P123880 = IM... 48 0.55 1
(AI035553) ub48e09.r1 Soares_mammary_gland_NbMMG Mus musculu... 48 0.55 1
(BM899087) UI-M-DJ1-bts-f-11-0-UI.s1 NIH_BMAP_DJ1 Mus muscul... 48 0.55 1
(AA575250) vh19d02.r1 Soares_mammary_gland_NbMMG Mus musculu... 48 0.55 1
(BE135101) ug22h06.y1 Soares_mammary_gland_NMLMG Mus musculu... 48 0.55 1
(CU929571) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 38 1.0 7
(FM992690) Candida dubliniensis CD36 chromosome 3, complete ... 38 1.4 14
(ED710137) GM_WBb0056O09.f GM_WBb Glycine max genomic clone ... 38 1.5 2
(AC204344) Rhesus Macaque BAC CH250-466E11 () complete sequ... 40 1.5 5
(ED660957) GM_WBa0083L06.f GM_WBa Glycine max genomic clone ... 32 2.0 3
(FP067440) Zebrafish DNA sequence from clone CH73-104F13 in ... 46 2.2 1
(CU855889) Zebrafish DNA sequence from clone CH73-4I5 in lin... 46 2.2 1
(CU463865) Zebrafish DNA sequence from clone CH73-83L13 in l... 46 2.2 1
(CU179657) Zebrafish DNA sequence from clone CH211-22C7. 46 2.2 1
(CR954285) Zebrafish DNA sequence from clone DKEYP-87C8 in l... 46 2.2 1
(CR855312) Zebrafish DNA sequence from clone DKEY-259E6 in l... 46 2.2 1
(CR847850) Zebrafish DNA sequence from clone DKEY-90D8 in li... 46 2.2 1
(CR735130) Zebrafish DNA sequence from clone DKEY-206F21 in ... 46 2.2 1
(CR361554) Zebrafish DNA sequence from clone CH211-222L15 in... 46 2.2 1
(CR354375) Zebrafish DNA sequence from clone CH211-272P8 in ... 46 2.2 1
(BX957339) Zebrafish DNA sequence from clone DKEY-285D11 in ... 46 2.2 1
(BX927238) Zebrafish DNA sequence from clone DKEY-98N4 in li... 46 2.2 1
(BX248389) Zebrafish DNA sequence from clone CH211-236C4 in ... 46 2.2 1
(G58834) SHGC-105906 Human Homo sapiens STS genomic, sequenc... 46 2.2 1
(BD452613) Diagnosis of Diseases Associated with tumor suppr... 46 2.2 1
(AX251092) Sequence 60 from Patent WO0168912. 46 2.2 1
(AL450332) Human DNA sequence from clone RP11-138M12 on chro... 46 2.2 1
(AC148812) Dasypus novemcinctus clone VMRC5-289P18, WORKING ... 46 2.2 1
(AC134189) Rattus norvegicus clone CH230-385E9, *** SEQUENCI... 46 2.2 1
(AC121462) Rattus norvegicus clone CH230-31O9, *** SEQUENCIN... 46 2.2 1
(AC107538) Rattus norvegicus clone CH230-213H15, *** SEQUENC... 46 2.2 1
(DQ280178) Muntiacus muntjak vaginalis chromosome 1 clone 06... 46 2.2 1
(CT583699) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 46 2.2 1
(CT573207) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 46 2.2 1
(CR774190) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 46 2.2 1
(CR293497) Zebrafish DNA sequence *** SEQUENCING CANCELLED *... 46 2.2 1
(AC218474) Bos taurus clone CH240-314J6, WORKING DRAFT SEQUE... 46 2.2 1
(CU364702) Aphanomyces euteiches cDNA. 46 2.2 1
(AZ061973) RPCI-23-429J8.TV RPCI-23 Mus musculus genomic clo... 46 2.2 1
(AQ387082) RPCI11-154J16.TV RPCI-11 Homo sapiens genomic clo... 46 2.2 1
(FH384603) CHO_OF4750xa04r1.ab1 CHO_OF4 Nicotiana tabacum ge... 46 2.2 1
(ER633827) 1093018589122 Global-Ocean-Sampling_GS-36-01-01-2... 46 2.2 1
(DH438926) Macropus eugenii DNA with T7 primer, fosmid clone... 46 2.2 1
(EB911197) 8370998 ZF31 Danio rerio cDNA clone 3231248, mRNA... 46 2.2 1
(DT141842) JGI_ANNO19563.rev ANNO Pimephales promelas Whole ... 46 2.2 1
(AM784857) Nicotiana tabacum EST, clone nt005163039. 46 2.2 1
(AA592319) vo23b10.r1 Barstead mouse myotubes MPLRB5 Mus mus... 46 2.2 1
(GH514205) CCUF8120.g1 CCUF Peromyscus maniculatus bairdii B... 46 2.2 1
(GH514204) CCUF8120.b1 CCUF Peromyscus maniculatus bairdii B... 46 2.2 1
(FE262623) CAZO2735.rev CAZO Naegleria gruberi Flagellate St... 46 2.2 1
(EY057081) CATF10379.fwd CATF Artemisia annua, Tanzanian, fr... 46 2.2 1
(EY057080) CATF10379.rev CATF Artemisia annua, Tanzanian, fr... 46 2.2 1
(AC115592) Dictyostelium discoideum chromosome 2 map 1-12595... 42 2.3 3
(AL445564) Mycoplasma pulmonis (strain UAB CTIP) complete ge... 36 2.8 11
(DQ302100) Vanhornia eucnemidarum mitochondrion, complete ge... 38 3.0 5
(AC218576) Bos taurus clone CH240-311I7, WORKING DRAFT SEQUE... 38 3.8 5
(AC214624) Populus trichocarpa clone ACSB1889-P04, complete ... 44 3.9 2
(AC123722) Mus musculus chromosome 5, clone RP23-424O22, com... 42 4.5 2
(EY163186) CBTN9280.g1_O15.ab1:P Triphysaria pusilla root ti... 42 5.4 2
(EY162342) CBTN8894.g1_K15.ab1:P Triphysaria pusilla root ti... 42 5.5 2
(EY164643) CBTN9947.g1_F16.ab1:P Triphysaria pusilla root ti... 42 5.7 2
(FH071062) CHO_OF3666xp05f1.ab1 CHO_OF3 Nicotiana tabacum ge... 42 5.8 2
(AC110665) Canis lupus familiaris clone RP81-144D11, WORKING... 36 6.2 6
(AL596253) Human DNA sequence from clone RP11-104B16 on chro... 36 6.7 2
(AC181575) Strongylocentrotus purpuratus clone R3-9D17, WORK... 40 7.9 3
(AC156538) Bos taurus clone CH240-40C7, WORKING DRAFT SEQUEN... 34 8.1 5
(AC174918) Bos taurus clone CH240-123I10, WORKING DRAFT SEQU... 38 8.4 5
(CR386282) Gallus gallus finished cDNA, clone ChEST55p6. 44 8.5 1
(BV985568) pRRL2:Newb:20080411:365914 USMARC Pig Breed SNP D... 44 8.5 1
(BV487283) S216P6686RG12.T0 Masuku Pan troglodytes troglodyt... 44 8.5 1
(BV482882) srg65d02.b1 Clint Pan troglodytes verus STS genom... 44 8.5 1
(AL837510) Mouse DNA sequence from clone RP23-200B23 on chro... 44 8.5 1
(AL732322) Mouse DNA sequence from clone RP23-234H9 on chrom... 44 8.5 1
(AC164600) Mus musculus chromosome 1, clone RP23-366M5, comp... 44 8.5 1
(AC134526) Mus musculus BAC clone RP24-500L4 from chromosome... 44 8.5 1
(AC101788) Mus musculus chromosome 15, clone RP24-148C8, com... 44 8.5 1
(AC193618) Pan troglodytes BAC clone CH251-276J6 from chromo... 44 8.5 1
(AC184070) Populus trichocarpa clone Pop1-31N15, complete se... 44 8.5 1
(AC135801) Medicago truncatula chromosome 8 clone mth2-23o16... 44 8.5 1
(AX513193) Sequence 5 from Patent WO02062976. 44 8.5 1
(AC186201) Canis Familiaris chromosome 17, clone XX-304P12, ... 44 8.5 1
(AL138828) Human DNA sequence from clone RP11-472E5 on chrom... 44 8.5 1
(AC021105) Homo sapiens BAC clone RP11-163O17 from 4, comple... 44 8.5 1
(AC003684) Homo sapiens X BAC GS1-519E5 (Genome Systems Huma... 44 8.5 1
(AC158298) Mus musculus chromosome 7 clone RP24-296M18 map 7... 44 8.5 1
(AC157885) Rhinolophus ferrumequinum clone VMRC7-333P9, WORK... 44 8.5 1
(CU469223) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 8.5 1
(CU179666) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 8.5 1
(AC181777) Strongylocentrotus purpuratus clone R3-1033B12, W... 44 8.5 1
(AC169747) Bos taurus clone CH240-233B13, WORKING DRAFT SEQU... 44 8.5 1
(AC168714) Strongylocentrotus purpuratus clone R3-3011E5, WO... 44 8.5 1
(AC022654) Homo sapiens clone RP11-28N15, WORKING DRAFT SEQU... 44 8.5 1
(BH164316) ENTRL41TF Entamoeba histolytica Sheared DNA Entam... 44 8.5 1
(BH136349) ENTNY95TR Entamoeba histolytica Sheared DNA Entam... 44 8.5 1
(BH135159) ENTOF08TR Entamoeba histolytica Sheared DNA Entam... 44 8.5 1
(BH133340) ENTND59TR Entamoeba histolytica Sheared DNA Entam... 44 8.5 1
(AZ979992) 2M0256D23R Mouse 10kb plasmid UUGC2M library Mus ... 44 8.5 1
(AZ682489) ENTFX70TR Entamoeba histolytica Sheared DNA Entam... 44 8.5 1
(AZ676535) ENTHV06TR Entamoeba histolytica Sheared DNA Entam... 44 8.5 1
(AZ671679) ENTMS94TF Entamoeba histolytica Sheared DNA Entam... 44 8.5 1
(AZ669886) ENTJL21TR Entamoeba histolytica Sheared DNA Entam... 44 8.5 1
(AZ669719) ENTHW58TR Entamoeba histolytica Sheared DNA Entam... 44 8.5 1
(AZ527891) ENTBO61TR Entamoeba histolytica Sheared DNA Entam... 44 8.5 1
(FH039045) CHO_OF3295xg06f1.ab1 CHO_OF3 Nicotiana tabacum ge... 44 8.5 1
(ER438994) 1092963806256 Global-Ocean-Sampling_GS-35-01-01-1... 44 8.5 1
(ER405192) 1095356004133 Global-Ocean-Sampling_GS-34-01-01-1... 44 8.5 1
(EJ704610) 1092956048918 Global-Ocean-Sampling_GS-30-02-01-1... 44 8.5 1
(EJ696672) 1092956021239 Global-Ocean-Sampling_GS-30-02-01-1... 44 8.5 1
(EJ508069) 1095407028741 Global-Ocean-Sampling_GS-28-01-01-1... 44 8.5 1
(EJ287942) 1095370001305 Global-Ocean-Sampling_GS-27-01-01-1... 44 8.5 1
(EJ257297) 1095349016667 Global-Ocean-Sampling_GS-27-01-01-1... 44 8.5 1
(EJ101787) 1092344115145 Global-Ocean-Sampling_GS-26-02-01-1... 44 8.5 1
(EJ101470) 1092343400843 Global-Ocean-Sampling_GS-26-02-01-1... 44 8.5 1
(CR241700) Reverse strand read from insert in 5'HPRT inserti... 44 8.5 1
(EL432776) CHCS7140.b1_G10.ab1 CHC(LMS) Texas blueweed Helia... 44 8.5 1
(EL431134) CHCS564.b1_H21.ab1 CHC(LMS) Texas blueweed Helian... 44 8.5 1
(DR108760) USDA-FP_166014 5th-instar Anoplophora glabripenni... 44 8.5 1
(DN850560) 4146073 BARC_3GAL chicken mixed tissue Gallus gal... 44 8.5 1
(AL584014) Gallus gallus mRNA; expressed sequence tag ROS002... 44 8.5 1
(AL371797) Medicago truncatula EST MtBA46E09F1 : T3 end of c... 44 8.5 1
(AJ808009) Antirrhinum majus EST, clone 018_6_08_g16. 44 8.5 1
(AJ448865) Gallus gallus EST, clone library riken1, clone 20... 44 8.5 1
(BX277124) Gallus gallus multi-tissues normalized library (g... 44 8.5 1
(BX271380) Gallus gallus multi-tissues normalized and once-s... 44 8.5 1
(BU483959) 603472368F1 CSEQRBN22 Gallus gallus cDNA clone Ch... 44 8.5 1
(BU215819) 603759280F1 CSEQCHN04 Gallus gallus cDNA clone Ch... 44 8.5 1
(BI267093) NF094B04IN1F1041 Insect herbivory Medicago trunca... 44 8.5 1
(BI266825) NF086B08IN1F1073 Insect herbivory Medicago trunca... 44 8.5 1
(BG586972) EST488741 MHAM Medicago truncatula/Glomus versifo... 44 8.5 1
(BG450780) NF095F04DT1F1041 Drought Medicago truncatula cDNA... 44 8.5 1
(BG449195) NF001C02IN1F1018 Insect herbivory Medicago trunca... 44 8.5 1
(BF642215) NF044A10IN1F1072 Insect herbivory Medicago trunca... 44 8.5 1
(BF641652) NF064H09IN1F1079 Insect herbivory Medicago trunca... 44 8.5 1
(BF634753) NF069D09DT1F1077 Drought Medicago truncatula cDNA... 44 8.5 1
(BF003751) EST432249 KV1 Medicago truncatula cDNA clone pKV1... 44 8.5 1
(FD096664) CBFH3894.g1 CBFH: Normalized blue catfish cDNA li... 44 8.5 1
(FD023816) CBNI9532.g1 CBNI: Normalized channel catfish cDNA... 44 8.5 1
(AW774744) EST333895 KV3 Medicago truncatula cDNA clone pKV3... 44 8.5 1
(AW691469) NF041E01ST1F1000 Developing stem Medicago truncat... 44 8.5 1
(AW690487) NF035B02ST1F1000 Developing stem Medicago truncat... 44 8.5 1
(AW585379) EST317007 MHAM Medicago truncatula/Glomus versifo... 44 8.5 1
(EV259929) MTYE181TF JCVI-MT1 Medicago truncatula cDNA 5', m... 44 8.5 1
(CP000016) Candidatus Blochmannia pennsylvanicus str. BPEN, ... 44 8.5 1
(AL111168) Campylobacter jejuni subsp. jejuni NCTC 11168 com... 44 8.5 1

>(AC115598) Dictyostelium discoideum chromosome 2 map 581427-735498
strain AX4, complete sequence.
Length = 154071

Score = 500 bits (252), Expect(5) = 0.0
Identities = 252/252 (100%)
Strand = Plus / Plus


Query: 422 ccattaacagtggaaacagaaacaaaaccaaaaccaattgaagttgaagttgaaaaagtt 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77215 ccattaacagtggaaacagaaacaaaaccaaaaccaattgaagttgaagttgaaaaagtt 77274


Query: 482 ggtattccatttgtatatattgatttagtttcagaaggatcaccatctgataaagcaaat 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77275 ggtattccatttgtatatattgatttagtttcagaaggatcaccatctgataaagcaaat 77334


Query: 542 ttgaaaaagggtgatttaattttccaattcggtacagttggcccattttttgaagagaga 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77335 ttgaaaaagggtgatttaattttccaattcggtacagttggcccattttttgaagagaga 77394


Query: 602 caagttggtgataatttaaattcaaaccatcttcaatcaattgctaccatagtacgtaat 661
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77395 caagttggtgataatttaaattcaaaccatcttcaatcaattgctaccatagtacgtaat 77454


Query: 662 agtgaaaacaaa 673
||||||||||||
Sbjct: 77455 agtgaaaacaaa 77466

Score = 337 bits (170), Expect(5) = 0.0
Identities = 170/170 (100%)
Strand = Plus / Plus


Query: 30 gtgatcattctataacagtcattgaagatgaagcatctataattaaaactcttatggtta 89
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 76324 gtgatcattctataacagtcattgaagatgaagcatctataattaaaactcttatggtta 76383


Query: 90 caagaggtgatctcgaaaaggagcttgagtctttaatgaacttcctaaagagtggcgatg 149
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 76384 caagaggtgatctcgaaaaggagcttgagtctttaatgaacttcctaaagagtggcgatg 76443


Query: 150 gtaaaacttttggattaaaaggatcattcactgattctgaaggttatcct 199
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 76444 gtaaaacttttggattaaaaggatcattcactgattctgaaggttatcct 76493

Score = 268 bits (135), Expect(5) = 0.0
Identities = 135/135 (100%)
Strand = Plus / Plus


Query: 200 tctccacatttagaattaattattgaagttaaaaaagcaagaagtagaattgcacatatc 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 76987 tctccacatttagaattaattattgaagttaaaaaagcaagaagtagaattgcacatatc 77046


Query: 260 caaaatgattataaacaagtaatgaaagatattgaatttcatttagaaaagttacataaa 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77047 caaaatgattataaacaagtaatgaaagatattgaatttcatttagaaaagttacataaa 77106


Query: 320 tcaccaacaaataaa 334
|||||||||||||||
Sbjct: 77107 tcaccaacaaataaa 77121

Score = 184 bits (93), Expect(5) = 0.0
Identities = 93/93 (100%)
Strand = Plus / Plus


Query: 671 aaacaaagcaatccaaataaaattatcaagaggtacttcaattatttcaacttcattaat 730
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77460 aaacaaagcaatccaaataaaattatcaagaggtacttcaattatttcaacttcattaat 77519


Query: 731 tcctcgtaaatggagtggtcaaggattaattgg 763
|||||||||||||||||||||||||||||||||
Sbjct: 77520 tcctcgtaaatggagtggtcaaggattaattgg 77552

Score = 131 bits (66), Expect(5) = 0.0
Identities = 66/66 (100%)
Strand = Plus / Plus


Query: 763 gttgcttaattaaaccaatatagataaataccttctttgatatatattagtgtcaagata 822
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77648 gttgcttaattaaaccaatatagataaataccttctttgatatatattagtgtcaagata 77707


Query: 823 gtttgt 828
||||||
Sbjct: 77708 gtttgt 77713

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 102105510
Number of Hits to DB: 1,032,624,508
Number of extensions: 66485295
Number of successful extensions: 5671396
Number of sequences better than 10.0: 176
Length of query: 837
Length of database: 101,790,757,118
Length adjustment: 24
Effective length of query: 813
Effective length of database: 99,340,224,878
Effective search space: 80763602825814
Effective search space used: 80763602825814
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)

protein update 2009. 7.31
Homology vs Protein
Query= Contig-U04752-1 (Contig-U04752-1Q) /CSM_Contig/Contig-U04752-1Q.Seq.d
(837 letters)

Database: nrp_A
3,268,448 sequences; 1,061,185,681 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

AC115598_26(AC115598|pid:none) Dictyostelium discoideum chromoso... 391 e-120
BC074472_1(BC074472|pid:none) Xenopus laevis MGC84770 protein, m... 73 5e-17
BT047359_1(BT047359|pid:none) Salmo salar clone ssal-evd-520-375... 75 1e-16
BC170825_1(BC170825|pid:none) Xenopus tropicalis proteasome (pro... 72 1e-16
BC160446_1(BC160446|pid:none) Xenopus tropicalis proteasome (pro... 72 2e-16
BT078874_1(BT078874|pid:none) Esox lucius clone eluc-evq-513-272... 74 2e-15
AL844502_173(AL844502|pid:none) Plasmodium falciparum 3D7 chromo... 81 2e-14
EU966409_1(EU966409|pid:none) Zea mays clone 294208 26S proteaso... 69 4e-14
(Q9WTV5) RecName: Full=26S proteasome non-ATPase regulatory subu... 67 6e-13
AK168339_1(AK168339|pid:none) Mus musculus CRL-1722 L5178Y-R cDN... 66 8e-13
EF145233_1(EF145233|pid:none) Populus trichocarpa clone WS01122_... 62 2e-11
AY892303_1(AY892303|pid:none) Synthetic construct Homo sapiens c... 61 3e-11
(O00233) RecName: Full=26S proteasome non-ATPase regulatory subu... 61 3e-11
BC002383_1(BC002383|pid:none) Homo sapiens proteasome (prosome, ... 61 3e-11
AJ720363_1(AJ720363|pid:none) Gallus gallus mRNA for hypothetica... 59 4e-11
AK118456_1(AK118456|pid:none) Arabidopsis thaliana At5g57950 mRN... 58 2e-10
AK011984_1(AK011984|pid:none) Mus musculus 10 days embryo whole ... 66 3e-10
AM270180_9(AM270180|pid:none) Aspergillus niger contig An08c0250... 56 1e-09
FN392320_413(FN392320|pid:none) Pichia pastoris GS115 chromosome... 51 2e-09
T15289(T15289)hypothetical protein C44B7.1 - Caenorhabditis eleg... 48 5e-09
AM920437_125(AM920437|pid:none) Penicillium chrysogenum Wisconsi... 56 5e-09
CR382124_595(CR382124|pid:none) Kluyveromyces lactis strain NRRL... 42 4e-08
CR548612_399(CR548612|pid:none) Paramecium tetraurelia macronucl... 56 1e-07
(P40555) RecName: Full=Probable 26S proteasome regulatory subuni... 45 1e-07
CP000594_355(CP000594|pid:none) Ostreococcus lucimarinus CCE9901... 44 4e-07
AB003177_1(AB003177|pid:none) Homo sapiens mRNA for proteasome s... 58 4e-07
AY891287_1(AY891287|pid:none) Synthetic construct Homo sapiens c... 58 4e-07
AC159423_28(AC159423|pid:none) Trypanosoma brucei chromosome 8 c... 55 3e-06
FM992688_1029(FM992688|pid:none) Candida dubliniensis CD36 chrom... 39 5e-06
CR940348_664(CR940348|pid:none) Theileria annulata strain Ankara... 54 6e-06
CU633438_786(CU633438|pid:none) Podospora anserina genomic DNA c... 51 5e-05
AX400024_1(AX400024|pid:none) Sequence 195 from Patent WO0218424. 33 0.004
AM494953_29(AM494953|pid:none) Leishmania braziliensis chromosom... 33 0.015
AY814454_1(AY814454|pid:none) Schistosoma japonicum SJCHGC05388 ... 42 0.033
CR382134_661(CR382134|pid:none) Debaryomyces hansenii strain CBS... 29 0.26
CT005255_30(CT005255|pid:none) Leishmania major strain Friedlin,... 38 0.36
AE016817_388(AE016817|pid:none) Ashbya gossypii (= Eremothecium ... 29 0.72
CP000813_2906(CP000813|pid:none) Bacillus pumilus SAFR-032, comp... 37 0.81
(A0T0D9) RecName: Full=DNA-directed RNA polymerase subunit beta'... 36 1.8
CP000384_844(CP000384|pid:none) Mycobacterium sp. MCS, complete ... 35 2.4
CP001185_924(CP001185|pid:none) Thermosipho africanus TCF52B, co... 35 3.1
AP010904_3966(AP010904|pid:none) Desulfovibrio magneticus RS-1 D... 35 4.0
CP001230_596(CP001230|pid:none) Persephonella marina EX-H1, comp... 35 4.0
CP000084_5(CP000084|pid:none) Candidatus Pelagibacter ubique HTC... 35 4.0
CP000967_374(CP000967|pid:none) Xanthomonas oryzae pv. oryzae PX... 34 5.2
AM039952_4313(AM039952|pid:none) Xanthomonas campestris pv. vesi... 34 5.2
U66912_1(U66912|pid:none) Dictyostelium discoideum ORF DG1016 ge... 34 5.2
AY220914_1(AY220914|pid:none) Dictyostelium discoideum ComB (com... 34 5.2
AP008229_4145(AP008229|pid:none) Xanthomonas oryzae pv. oryzae M... 34 5.2
CU179680_627(CU179680|pid:none) Mycoplasma agalactiae PG2 chromo... 34 5.2
AE013598_4306(AE013598|pid:none) Xanthomonas oryzae pv. oryzae K... 34 5.2
AE014133_1720(AE014133|pid:none) Streptococcus mutans UA159, com... 34 6.8
CU928170_527(CU928170|pid:none) Kluyveromyces thermotolerans str... 34 6.8
CP000431_1650(CP000431|pid:none) Rhodococcus jostii RHA1, comple... 34 6.8
CP000414_625(CP000414|pid:none) Leuconostoc mesenteroides subsp.... 34 6.8
BA000016_2230(BA000016|pid:none) Clostridium perfringens str. 13... 33 8.9
CP000246_2433(CP000246|pid:none) Clostridium perfringens ATCC 13... 33 8.9
CP000048_494(CP000048|pid:none) Borrelia hermsii DAH, complete g... 33 8.9

>AC115598_26(AC115598|pid:none) Dictyostelium discoideum chromosome
2 map 581427-735498 strain AX4, complete sequence.
Length = 261

Score = 391 bits (1005), Expect(2) = e-120
Identities = 203/226 (89%), Positives = 203/226 (89%), Gaps = 2/226 (0%)
Frame = +2

Query: 2 TDINNKNNNSDHSITVIEDEASIIKTLMVTRGDLEKELESLMNFLKSGDGKTFGLKGSFT 181
TDINNKNNNSDHSITVIEDEASIIKTLMVTRGDLEKELESLMNFLKSGDGKTFGLKGSFT
Sbjct: 2 TDINNKNNNSDHSITVIEDEASIIKTLMVTRGDLEKELESLMNFLKSGDGKTFGLKGSFT 61

Query: 182 DSEGYPSPHLELIIEVKKARSRIAHIQNDYKQVMKDIEFHLEKLHKSPTNK--XXXXXXX 355
DSEGYPSPHLELIIEVKKARSRIAHIQNDYKQVMKDIEFHLEKLHKSPTNK
Sbjct: 62 DSEGYPSPHLELIIEVKKARSRIAHIQNDYKQVMKDIEFHLEKLHKSPTNKNQSSSTFSI 121

Query: 356 XXXXXXXXXXXXXXEDEMKIDKPLTVETETKPKPIEVEVEKVGIPFVYIDLVSEGSPSDK 535
EDEMKIDKPLTVETETKPKPIEVEVEKVGIPFVYIDLVSEGSPSDK
Sbjct: 122 NNTTSTSNNNNNNNEDEMKIDKPLTVETETKPKPIEVEVEKVGIPFVYIDLVSEGSPSDK 181

Query: 536 ANLKKGDLIFQFGTVGPFFEERQVGDNLNSNHLQSIATIVRNSENK 673
ANLKKGDLIFQFGTVGPFFEERQVGDNLNSNHLQSIATIVRNSENK
Sbjct: 182 ANLKKGDLIFQFGTVGPFFEERQVGDNLNSNHLQSIATIVRNSENK 227

Score = 63.5 bits (153), Expect(2) = e-120
Identities = 31/31 (100%), Positives = 31/31 (100%)
Frame = +3

Query: 672 NKAIQIKLSRGTSIISTSLIPRKWSGQGLIG 764
NKAIQIKLSRGTSIISTSLIPRKWSGQGLIG
Sbjct: 226 NKAIQIKLSRGTSIISTSLIPRKWSGQGLIG 256

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3268448
Number of Hits to DB: 1,174,818,066
Number of extensions: 22197716
Number of successful extensions: 73936
Number of sequences better than 10.0: 58
Number of HSP's gapped: 73769
Number of HSP's successfully gapped: 106
Length of query: 279
Length of database: 1,061,185,681
Length adjustment: 127
Effective length of query: 152
Effective length of database: 646,092,785
Effective search space: 98206103320
Effective search space used: 98206103320
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)

PSORT

psg: 0.75 gvh: 0.37 alm: 0.44 top: 0.53 tms: 0.00 mit: 0.21 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 1.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

44.0 %: cytoplasmic
36.0 %: nuclear
12.0 %: vesicles of secretory system
4.0 %: cytoskeletal
4.0 %: mitochondrial

>> prediction for Contig-U04752-1 is cyt

VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 1
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0