>Contig-U04751-1 (Contig-U04751-1Q) /CSM_Contig/Contig-U04751-1Q.Seq.d
AAATGATTTCGTCAAGTTTAAAACCAAGTGTATTATTATGGATATTAGCA
ATACTTATACCATCAACATTAATTACAACATATACATTAACAGTTTTATT
ATTTCATGGAATTAGAAGAACAGTTCCCTACATAAGTGATACAATTGATT
TTAGTCCTGAAAGTTGCATAGGTACCTTTTTTATTTCAATTTCAGCATTT
TTAGTGTTCATAGTTGTATTTGTAAAACATTTTTTATTACAAAACAATAT
TAATCAAAATTTTAATATTGATATTATCCTTAATGAGAATGAAAATGAAA
AAAAGAAAAATAGAGCAAAAATGTTAAATAGAATTTCAACTTTTTTAGGT
TTGATATGTGGAGTATGTATACATGGTGTTTCATCATTTCAATATCATAA
TACCGGTCTTGTCCATTCAATATTTGCAGCATCTTTTTTTTTTACTGGTT
TTATTTATATATTTACACAAACTTATTTGGATCATAAGTTTAGTAAATTA
CCAAAAAGAATTTTAATATTAAGAAGAGTAATATCATTAACAACATCAGT
GTTTATTGGATATAATTAAAAA

est1=SSC646E,1,573

MISSSLKPSVLLWILAILIPSTLITTYTLTVLLFHGIRRTVPYISDTIDFSPESCIGTFF
ISISAFLVFIVVFVKHFLLQNNINQNFNIDIILNENENEKKKNRAKMLNRISTFLGLICG
VCIHGVSSFQYHNTGLVHSIFAASFFFTGFIYIFTQTYLDHKFSKLPKRILILRRVISLT
TSVFIGYN*k

Frame A:
k*frqv*nqvyyygy*qylyhqh*lqhih*qfyyfmeleeqfpt*viqlilvlkva*vpf
lfqfqhf*cs*lyl*nifyyktilikilililslmrmkmkkrkieqkc*iefqlf*v*yv
eyvymvfhhfniiipvlsiqylqhlffllvlfiylhkliwiislvnyqkef*y*ee*yh*
qhqclldiik


Frame B:
ndfvkfktkciimdisntytininyniyinsfiiswn*knsslhk*yn*f*s*klhrylf
yfnfsifsvhscicktffitkqy*skf*y*yyp**e*k*kkek*sknvk*nfnffrfdmw
smytwcfiisis*yrscpfnicsifffywfylyiytnlfgs*v**itkknfnikksniin
nisvywi*lk


Frame C:
MISSSLKPSVLLWILAILIPSTLITTYTLTVLLFHGIRRTVPYISDTIDFSPESCIGTFF
ISISAFLVFIVVFVKHFLLQNNINQNFNIDIILNENENEKKKNRAKMLNRISTFLGLICG
VCIHGVSSFQYHNTGLVHSIFAASFFFTGFIYIFTQTYLDHKFSKLPKRILILRRVISLT
TSVFIGYN*k

Query= Contig-U04751-1 (Contig-U04751-1Q)
/CSM_Contig/Contig-U04751-1Q.Seq.d
         (572 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U04751-1 (Contig-U04751-1Q) /CSM_Contig/Conti...   575  e-164
Contig-U12230-1 (Contig-U12230-1Q) /CSM_Contig/Conti...    38  0.010
Contig-U12046-1 (Contig-U12046-1Q) /CSM_Contig/Conti...    36  0.040
Contig-U10366-1 (Contig-U10366-1Q) /CSM_Contig/Conti...    36  0.040
Contig-U09755-1 (Contig-U09755-1Q) /CSM_Contig/Conti...    36  0.040
Contig-U06896-1 (Contig-U06896-1Q) /CSM_Contig/Conti...    36  0.040
Contig-U06433-1 (Contig-U06433-1Q) /CSM_Contig/Conti...    36  0.040
Contig-U13428-1 (Contig-U13428-1Q) /CSM_Contig/Conti...    34  0.16
Contig-U12594-1 (Contig-U12594-1Q) /CSM_Contig/Conti...    34  0.16
Contig-U11660-1 (Contig-U11660-1Q) /CSM_Contig/Conti...    30  2.5

>Contig-U04751-1 (Contig-U04751-1Q) /CSM_Contig/Contig-U04751-1Q.Seq.d
          Length = 572

 Score =  575 bits (290), Expect = e-164
 Identities = 290/290 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaatgatttcgtcaagtttaaaaccaagtgtattattatggatattagcaatacttatac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   aaatgatttcgtcaagtttaaaaccaagtgtattattatggatattagcaatacttatac 60

                                                                       
Query: 61  catcaacattaattacaacatatacattaacagttttattatttcatggaattagaagaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  catcaacattaattacaacatatacattaacagttttattatttcatggaattagaagaa 120

                                                                       
Query: 121 cagttccctacataagtgatacaattgattttagtcctgaaagttgcataggtacctttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 cagttccctacataagtgatacaattgattttagtcctgaaagttgcataggtacctttt 180

                                                                       
Query: 181 ttatttcaatttcagcatttttagtgttcatagttgtatttgtaaaacattttttattac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ttatttcaatttcagcatttttagtgttcatagttgtatttgtaaaacattttttattac 240

                                                             
Query: 241 aaaacaatattaatcaaaattttaatattgatattatccttaatgagaat 290
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 aaaacaatattaatcaaaattttaatattgatattatccttaatgagaat 290


 Score =  438 bits (221), Expect = e-123
 Identities = 241/251 (96%)
 Strand = Plus / Plus

                                                                       
Query: 322 tgttaaatagaatttcaacttttttaggtttgatatgtggagtatgtatacatggtgttt 381
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 tgttaaatagaatttcaacttttttaggtttgatatgtggagtatgtatacatggtgttt 381

                                                                       
Query: 382 catcatttcaatatcataataccggtcttgtccattcaatatttgcagcatcnnnnnnnn 441
           ||||||||||||||||||||||||||||||||||||||||||||||||||||        
Sbjct: 382 catcatttcaatatcataataccggtcttgtccattcaatatttgcagcatctttttttt 441

                                                                       
Query: 442 nnactggttttatttatatatttacacaaacttatttggatcataagtttagtaaattac 501
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 ttactggttttatttatatatttacacaaacttatttggatcataagtttagtaaattac 501

                                                                       
Query: 502 caaaaagaattttaatattaagaagagtaatatcattaacaacatcagtgtttattggat 561
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 caaaaagaattttaatattaagaagagtaatatcattaacaacatcagtgtttattggat 561

                      
Query: 562 ataattaaaaa 572
           |||||||||||
Sbjct: 562 ataattaaaaa 572


>Contig-U12230-1 (Contig-U12230-1Q) /CSM_Contig/Contig-U12230-1Q.Seq.d
          Length = 1633

 Score = 38.2 bits (19), Expect = 0.010
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 257 aaattttaatattgatatt 275
           |||||||||||||||||||
Sbjct: 48  aaattttaatattgatatt 30


>Contig-U12046-1 (Contig-U12046-1Q) /CSM_Contig/Contig-U12046-1Q.Seq.d
          Length = 1219

 Score = 36.2 bits (18), Expect = 0.040
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                             
Query: 468 caaacttatttggatcat 485
           ||||||||||||||||||
Sbjct: 587 caaacttatttggatcat 604


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 11,998
Number of Sequences: 6905
Number of extensions: 11998
Number of successful extensions: 1261
Number of sequences better than 10.0: 448
length of query: 572
length of database: 5,674,871
effective HSP length: 16
effective length of query: 556
effective length of database: 5,564,391
effective search space: 3093801396
effective search space used: 3093801396
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)

Query= Contig-U04751-1 (Contig-U04751-1Q) /CSM_Contig/Contig-U04751-1Q.Seq.d
         (572 letters)

Database: ddbj_A
           102,105,510 sequences; 101,790,757,118 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(C84076) Dictyostelium discoideum slug cDNA, clone SSC646.        349   0.0    4
(AC116984) Dictyostelium discoideum chromosome 2 map 2567470...   315   0.0    5
(AM639342) Entamoeba dispar GSS, clone dispar62a03.q1k.            42   0.013  2
(AM634319) Entamoeba dispar GSS, clone dispar118c01.p1k.           42   0.045  3
(AM629884) Entamoeba dispar GSS, clone dispar47b06.p1k.            42   0.052  3
(AL844501) Plasmodium falciparum strain 3D7, chromosome 1.         38   0.053  9
(AC218211) Bos taurus clone CH240-291G8, WORKING DRAFT SEQUE...    50   0.094  1
(AC166674) Bos taurus clone CH240-182A9, WORKING DRAFT SEQUE...    50   0.094  1
(EI493355) PV_GBa0110G11.f PV_GBa Phaseolus vulgaris genomic...    50   0.094  1
(AL844506) Plasmodium falciparum chromosome  7.                    36   0.11   15
(GE663084) CBUF5180.g1 B.anynana_abdomen_2-10kb Bicyclus any...    38   0.26   2
(CU074300) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    48   0.37   1
(EH300131) UAHYP_09C_F_B06 UaHyphae_ARS Uromyces appendicula...    48   0.37   1
(EH300106) UAHYP_09C_R_B06 UaHyphae_ARS Uromyces appendicula...    48   0.37   1
(EK271933) 1095462261262 Global-Ocean-Sampling_GS-31-01-01-1...    38   0.75   2
(CR788226) Zebrafish DNA sequence from clone DKEY-205F16 in ...    44   1.3    3
(AL133322) Human DNA sequence from clone RP1-257L16 on chrom...    32   1.3    8
(BX276188) Zebrafish DNA sequence from clone CH211-245A19.         44   1.4    3
(AC117432) Homo sapiens 3 BAC RP11-80F7 (Roswell Park Cancer...    46   1.5    1
(AC106719) Homo sapiens 3p BAC RP11-12J13 (Roswell Park Canc...    46   1.5    1
(AC044814) Homo sapiens chromosome 8, clone RP11-688B7, comp...    46   1.5    1
(AC150728) Callithrix jacchus clone CH259-461F22, WORKING DR...    46   1.5    1
(AC224025) Bos taurus clone CH240-451P10, WORKING DRAFT SEQU...    46   1.5    1
(AC187659) Zea mays chromosome 8 clone CH201-326F4; ZMMBBc03...    46   1.5    1
(AC011575) Homo sapiens clone RP11-12J13, WORKING DRAFT SEQU...    46   1.5    1
(CR847894) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    34   1.9    5
(CU466255) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   2.0    4
(AM476483) Vitis vinifera contig VV78X023646.6, whole genome...    32   2.1    5
(BD460479) Diagnosis of Diseases Associated with Cell Cycle.       40   2.2    3
(BD452401) Diagnosis of Diseases Associated with Cell Cycle.       40   2.2    3
(AX348786) Sequence 244 from Patent WO0202807.                     40   2.2    3
(AX252015) Sequence 276 from Patent WO0168911.                     40   2.2    3
(AL034560) Plasmodium falciparum MAL3P8.                           34   2.3    6
(EI828065) POTGR51TR Solanum tuberosum RHPOTKEY BAC ends Sol...    42   2.5    2
(BA000021) Wigglesworthia glossinidia endosymbiont of Glossi...    32   2.6    2
(AC155345) Brassica rapa subsp. pekinensis clone KBrH080L24,...    34   2.9    6
(DU943720) 363487 Tomato EcoRI BAC Library Solanum lycopersi...    32   3.0    3
(AC213065) Pan troglodytes BAC clone CH251-62F21 from chromo...    36   3.1    3
(AC125182) Mus musculus BAC clone RP23-293D23 from 15, compl...    40   3.1    5
(AC110797) Homo sapiens BAC clone RP11-637M3 from 4, complet...    36   3.1    3
(AC002409) Arabidopsis thaliana chromosome 2 clone T20B5 map...    38   3.2    2
(CT583625) Zebrafish DNA sequence from clone CH211-151E11 in...    40   3.8    2
(AC183983) Pan troglodytes BAC clone CH251-515C21 from chrom...    36   3.8    3
(AL357502) Human DNA sequence *** SEQUENCING CANCELLED *** f...    32   5.4    8
(CR932966) Medicago truncatula chromosome 5 clone mth2-45l22...    38   5.6    4
(BD061520) Genome DNA of symbiotic bacteria of aphid.              34   5.6    11
(AR409405) Sequence 1 from patent US 6632935.                      34   5.6    11
(BA000003) Buchnera aphidicola str. APS (Acyrthosiphon pisum...    34   5.6    11
(CP001158) Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisu...    34   5.6    11
(CP001161) Buchnera aphidicola str. 5A (Acyrthosiphon pisum)...    34   5.7    11
(BV849626) pRRL2:Newb:20080411:226853 USMARC Pig Breed SNP D...    44   5.8    1
(AL935175) Mouse DNA sequence from clone RP23-397E13 on chro...    44   5.8    1
(AC156281) Mus musculus 6 BAC RP24-311B6 (Roswell Park Cance...    44   5.8    1
(AC154484) Mus musculus BAC clone RP24-115C5 from chromosome...    44   5.8    1
(AC153898) Mus musculus 6 BAC RP23-55J19 (Roswell Park Cance...    44   5.8    1
(AC127692) Mus musculus BAC clone RP23-49P3 from chromosome ...    44   5.8    1
(AC123796) Mus musculus BAC clone RP24-320P9 from chromosome...    44   5.8    1
(AC116731) Mus musculus chromosome 8, clone RP23-346D17, com...    44   5.8    1
(AC112259) Mus musculus BAC clone RP23-179F7 from 12, comple...    44   5.8    1
(AC212430) Solanum lycopersicum chromosome 11 clone C11HBa00...    44   5.8    1
(AC182662) Populus trichocarpa clone Pop1-15O24, complete se...    44   5.8    1
(AC148971) Medicago truncatula chromosome 2 clone mth2-79e23...    44   5.8    1
(DI007949) METHODS OF IDENTIFYING ANTIGEN GENE SEQUENCES.          44   5.8    1
(BD269147) Method for identifying antigen gene.                    44   5.8    1
(AR564239) Sequence 49 from patent US 6759516.                     44   5.8    1
(AC101417) Mus musculus clone RP23-121K17, LOW-PASS SEQUENCE...    44   5.8    1
(AC098633) Rattus norvegicus clone CH230-139B1, *** SEQUENCI...    44   5.8    1
(CU861610) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   5.8    1
(CU469100) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   5.8    1
(CU151852) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   5.8    1
(CU041258) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   5.8    1
(AC212632) Solanum lycopersicum chromosome 7 clone C07HBa012...    44   5.8    1
(AC189828) Aotus nancymaae clone CH258-418H19, WORKING DRAFT...    44   5.8    1
(AC186098) Microcebus murinus clone CH257-259I19, WORKING DR...    44   5.8    1
(AC177638) Strongylocentrotus purpuratus clone R3-1004C20, W...    44   5.8    1
(AQ574425) nbxb0085O20f CUGI Rice BAC Library Oryza sativa J...    44   5.8    1
(FH299958) CHO_OF4242xh09f1.ab1 CHO_OF4 Nicotiana tabacum ge...    44   5.8    1
(ER800743) PPTIM85TR Solanum tuberosum RHPOTKEY BAC ends Sol...    44   5.8    1
(ER577680) 1093015818832 Global-Ocean-Sampling_GS-36-01-01-2...    44   5.8    1
(ER549576) 1093016210504 Global-Ocean-Sampling_GS-35-01-01-1...    44   5.8    1
(ER444059) 1092963823840 Global-Ocean-Sampling_GS-35-01-01-1...    44   5.8    1
(ER369550) 1093022171512 Global-Ocean-Sampling_GS-34-01-01-1...    44   5.8    1
(ER364383) 1093018954442 Global-Ocean-Sampling_GS-34-01-01-1...    44   5.8    1
(ER363747) 1093018935232 Global-Ocean-Sampling_GS-34-01-01-1...    44   5.8    1
(ER345206) 1092344376187 Global-Ocean-Sampling_GS-34-01-01-1...    44   5.8    1
(EK350955) 1095467939594 Global-Ocean-Sampling_GS-31-01-01-1...    44   5.8    1
(EK334988) 1095467038004 Global-Ocean-Sampling_GS-31-01-01-1...    44   5.8    1
(EK192674) 1095460024976 Global-Ocean-Sampling_GS-31-01-01-1...    44   5.8    1
(EK123073) 1092964806700 Global-Ocean-Sampling_GS-31-01-01-1...    44   5.8    1
(EK047766) 1092959647844 Global-Ocean-Sampling_GS-31-01-01-1...    44   5.8    1
(EK014389) 1092955221168 Global-Ocean-Sampling_GS-31-01-01-1...    44   5.8    1
(EJ969813) 1093022072961 Global-Ocean-Sampling_GS-30-02-01-1...    44   5.8    1
(EJ941742) 1093018872479 Global-Ocean-Sampling_GS-30-02-01-1...    44   5.8    1
(EJ910177) 1093018534049 Global-Ocean-Sampling_GS-30-02-01-1...    44   5.8    1
(EJ895012) 1093018463335 Global-Ocean-Sampling_GS-30-02-01-1...    44   5.8    1
(EJ833475) 1093017595414 Global-Ocean-Sampling_GS-30-02-01-1...    44   5.8    1
(EJ824327) 1093017553355 Global-Ocean-Sampling_GS-30-02-01-1...    44   5.8    1
(EJ807892) 1093017471099 Global-Ocean-Sampling_GS-30-02-01-1...    44   5.8    1
(EJ800669) 1093017426201 Global-Ocean-Sampling_GS-30-02-01-1...    44   5.8    1
(EJ794303) 1093017392571 Global-Ocean-Sampling_GS-30-02-01-1...    44   5.8    1
(EJ787229) 1093017356576 Global-Ocean-Sampling_GS-30-02-01-1...    44   5.8    1
(EJ766559) 1092963279275 Global-Ocean-Sampling_GS-30-02-01-1...    44   5.8    1
(EJ751896) 1092963041551 Global-Ocean-Sampling_GS-30-02-01-1...    44   5.8    1
(EJ744342) 1092962043681 Global-Ocean-Sampling_GS-30-02-01-1...    44   5.8    1
(EJ718244) 1092959436140 Global-Ocean-Sampling_GS-30-02-01-1...    44   5.8    1
(EJ717913) 1092959434028 Global-Ocean-Sampling_GS-30-02-01-1...    44   5.8    1
(EJ711167) 1092956076442 Global-Ocean-Sampling_GS-30-02-01-1...    44   5.8    1
(EJ703928) 1092956046230 Global-Ocean-Sampling_GS-30-02-01-1...    44   5.8    1
(EJ505981) 1095403704874 Global-Ocean-Sampling_GS-28-01-01-1...    44   5.8    1
(EJ319586) 1095403342534 Global-Ocean-Sampling_GS-27-01-01-1...    44   5.8    1
(EJ291817) 1095386003235 Global-Ocean-Sampling_GS-27-01-01-1...    44   5.8    1
(EJ291383) 1095383005329 Global-Ocean-Sampling_GS-27-01-01-1...    44   5.8    1
(EJ251996) 1095344039401 Global-Ocean-Sampling_GS-27-01-01-1...    44   5.8    1
(EJ211254) 1092347003185 Global-Ocean-Sampling_GS-27-01-01-1...    44   5.8    1
(EJ142439) 1092343663695 Global-Ocean-Sampling_GS-27-01-01-1...    44   5.8    1
(EJ135165) 1092343594918 Global-Ocean-Sampling_GS-27-01-01-1...    44   5.8    1
(EJ096870) 1095462161101 Global-Ocean-Sampling_GS-26-01-01-1...    44   5.8    1
(EJ060418) 1095456060255 Global-Ocean-Sampling_GS-26-01-01-1...    44   5.8    1
(EJ050819) 1095454146785 Global-Ocean-Sampling_GS-26-01-01-1...    44   5.8    1
(DU841706) 219780 Tomato HindIII BAC Library Solanum lycoper...    44   5.8    1
(BZ164945) CH230-328J17.TV CHORI-230 Segment 2 Rattus norveg...    44   5.8    1
(BZ056862) lkf15a07.g1 B.oleracea002 Brassica oleracea genom...    44   5.8    1
(AG413067) Mus musculus molossinus DNA, clone:MSMg01-274E18....    44   5.8    1
(DV285277) NAAIE24TR Aedes aegypti - Fat Bodies Normalized (...    44   5.8    1
(DV285276) NAAIE24TF Aedes aegypti - Fat Bodies Normalized (...    44   5.8    1
(DV268723) AEDBB50TO Aedes re-sequencing Aedes aegypti cDNA ...    44   5.8    1
(DV268722) AEDBB50TF Aedes re-sequencing Aedes aegypti cDNA ...    44   5.8    1
(DV089115) 327-384-28_P03_T7 Nematostella vectensis normaliz...    44   5.8    1
(FE813455) CCAG31077.g1 CCAG Petrolisthes cinctipes heart, g...    44   5.8    1
(FC248268) CAGH5229.rev CAGH Nematostella vectensis Nemve La...    44   5.8    1
(CP001129) Streptococcus equi subsp. zooepidemicus MGCS10565...    44   5.8    1
(AM180355) Clostridium difficile 630 complete genome.              44   5.8    1
(AE017332) Mycoplasma hyopneumoniae 232, complete genome.          44   5.8    1
(AE017244) Mycoplasma hyopneumoniae 7448, complete genome.         44   5.8    1
(AE017243) Mycoplasma hyopneumoniae J, complete genome.            44   5.8    1
(AE014133) Streptococcus mutans UA159, complete genome.            44   5.8    1
(AE001583) Borrelia burgdorferi B31 plasmid lp5, complete se...    44   5.8    1
(AB036428) Streptococcus mutans ORF A, ORF B, dpr/ORF 1, ORF...    44   5.8    1
(AC147178) Medicago truncatula clone mth2-142i4, complete se...    42   5.9    4
(AM447570) Vitis vinifera contig VV78X025701.9, whole genome...    40   5.9    3
(FC791548) CBGC21054.rev CBGC Lottia gigantea 15h 18h embryo...    30   6.3    3
(AC156642) Mus musculus BAC clone RP23-254J5 from chromosome...    36   6.4    4
(Z74038) Caenorhabditis elegans Cosmid F58B4.                      40   6.5    3
(AC175960) Strongylocentrotus purpuratus clone R3-17E05, WOR...    38   6.9    2
(AC131814) Rattus norvegicus clone CH230-365J4, WORKING DRAF...    38   6.9    6
(FC694752) CAXX4585.rev CAXX Lottia gigantea from male gonad...    30   7.2    3
(FC738075) CBBH2848.rev CBBH Lottia gigantea 26h,37h,61h Lar...    30   7.5    3
(AC181140) Strongylocentrotus purpuratus clone R3-16F6, WORK...    38   8.1    4
(DX466392) Cpl08278 Papaya Genomic DNA BAC Library Carica pa...    40   8.2    2
(AC093419) Homo sapiens chromosome 1 clone RP11-135A15, comp...    36   8.4    5
(FC662088) CAXW2445.rev CAXW Lottia gigantea from female gon...    30   8.4    3
(AE014838) Plasmodium falciparum 3D7 chromosome 11 section 3...    32   8.5    8
(DX500124) Cpl42080 Papaya Genomic DNA BAC Library Carica pa...    40   8.5    2
(DX499986) Cpl41942 Papaya Genomic DNA BAC Library Carica pa...    40   8.5    2
(AC152299) Bos taurus clone CH240-1K10, WORKING DRAFT SEQUEN...    40   8.6    4
(ET982427) CHO_OF231xd15f1.ab1 CHO_OF Nicotiana tabacum geno...    34   8.8    2
(AP001902) Homo sapiens genomic DNA, chromosome 18q22 clone:...    34   9.2    5
(CU856419) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    32   9.5    5
(AM440405) Vitis vinifera contig VV78X079843.11, whole genom...    42   9.7    2

>(C84076) Dictyostelium discoideum slug cDNA, clone SSC646.
          Length = 573

 Score =  349 bits (176), Expect(4) = 0.0
 Identities = 176/176 (100%)
 Strand = Plus / Plus


Query: 1   aaatgatttcgtcaagtttaaaaccaagtgtattattatggatattagcaatacttatac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   aaatgatttcgtcaagtttaaaaccaagtgtattattatggatattagcaatacttatac 60


Query: 61  catcaacattaattacaacatatacattaacagttttattatttcatggaattagaagaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  catcaacattaattacaacatatacattaacagttttattatttcatggaattagaagaa 120


Query: 121 cagttccctacataagtgatacaattgattttagtcctgaaagttgcataggtacc 176
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 cagttccctacataagtgatacaattgattttagtcctgaaagttgcataggtacc 176

 Score =  256 bits (129), Expect(4) = 0.0
 Identities = 129/129 (100%)
 Strand = Plus / Plus


Query: 444 actggttttatttatatatttacacaaacttatttggatcataagtttagtaaattacca 503
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 actggttttatttatatatttacacaaacttatttggatcataagtttagtaaattacca 503


Query: 504 aaaagaattttaatattaagaagagtaatatcattaacaacatcagtgtttattggatat 563
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 aaaagaattttaatattaagaagagtaatatcattaacaacatcagtgtttattggatat 563


Query: 564 aattaaaaa 572
           |||||||||
Sbjct: 564 aattaaaaa 572

 Score =  222 bits (112), Expect(4) = 0.0
 Identities = 112/112 (100%)
 Strand = Plus / Plus


Query: 322 tgttaaatagaatttcaacttttttaggtttgatatgtggagtatgtatacatggtgttt 381
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 tgttaaatagaatttcaacttttttaggtttgatatgtggagtatgtatacatggtgttt 381


Query: 382 catcatttcaatatcataataccggtcttgtccattcaatatttgcagcatc 433
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 catcatttcaatatcataataccggtcttgtccattcaatatttgcagcatc 433

 Score =  103 bits (52), Expect(4) = 0.0
 Identities = 52/52 (100%)
 Strand = Plus / Plus


Query: 240 caaaacaatattaatcaaaattttaatattgatattatccttaatgagaatg 291
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 caaaacaatattaatcaaaattttaatattgatattatccttaatgagaatg 291

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 102105510
Number of Hits to DB: 666,181,083
Number of extensions: 44235657
Number of successful extensions: 3879069
Number of sequences better than 10.0: 159
Length of query: 572
Length of database: 101,790,757,118
Length adjustment: 23
Effective length of query: 549
Effective length of database: 99,442,330,388
Effective search space: 54593839383012
Effective search space used: 54593839383012
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)

Query= Contig-U04751-1 (Contig-U04751-1Q) /CSM_Contig/Contig-U04751-1Q.Seq.d
         (572 letters)

Database: nrp_A
           3,268,448 sequences; 1,061,185,681 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116984_27(AC116984|pid:none) Dictyostelium discoideum chromoso...   272   5e-72
AC117176_4(AC117176|pid:none) Dictyostelium discoideum chromosom...   133   3e-30
AE014298_340(AE014298|pid:none) Drosophila melanogaster chromoso...    51   3e-05
BC161544_1(BC161544|pid:none) Xenopus tropicalis cDNA sequence B...    46   6e-04
AY222970_1(AY222970|pid:none) Schistosoma japonicum clone ZZZ42 ...    46   6e-04
BC083290_1(BC083290|pid:none) Danio rerio zgc:101811, mRNA (cDNA...    45   0.002
BX890572_6(BX890572|pid:none) Zebrafish DNA sequence from clone ...    45   0.002
(Q6NRS6) RecName: Full=Damage-regulated autophagy modulator;           44   0.004
(Q5BK09) RecName: Full=Transmembrane protein 77;  &BC091251_1(BC...    43   0.007
(Q5EAK8) RecName: Full=Damage-regulated autophagy modulator;  &B...    42   0.009
AY336747_1(AY336747|pid:none) Homo sapiens putative transmembran...    42   0.012
(Q6UX65) RecName: Full=Transmembrane protein 77;  &AL355816_1(AL...    42   0.012
FN357301_30(FN357301|pid:none) Schistosoma mansoni genome sequen...    42   0.012
AY813308_1(AY813308|pid:none) Schistosoma japonicum SJCHGC03993 ...    40   0.034
BT059174_1(BT059174|pid:none) Salmo salar clone ssal-rgf-530-163...    40   0.034
FN357301_29(FN357301|pid:none) Schistosoma mansoni genome sequen...    40   0.045
BT045945_1(BT045945|pid:none) Salmo salar clone ssal-rgf-537-133...    40   0.059
AF483532_1(AF483532|pid:none) Oncorhynchus mykiss VHSV-induced p...    39   0.077
BC168648_1(BC168648|pid:none) Rattus norvegicus damage-regulated...    39   0.10
(A7MBB3) RecName: Full=Transmembrane protein 224; Flags: Precurs...    39   0.10
(Q9DC58) RecName: Full=Damage-regulated autophagy modulator;  &A...    39   0.13
AY815301_1(AY815301|pid:none) Schistosoma japonicum SJCHGC02197 ...    39   0.13
BT046516_1(BT046516|pid:none) Salmo salar clone ssal-eve-559-208...    38   0.17
FB746582_1(FB746582|pid:none) Sequence 49 from Patent EP1903111.       36   0.65
BT049725_1(BT049725|pid:none) Salmo salar clone ssal-plnb-510-27...    36   0.65
(A6NC51) RecName: Full=Transmembrane protein 224; Flags: Precurs...    32   9.4
EF583821_104(EF583821|pid:none) Bacillus phage 0305phi8-36, comp...    32   9.4
BC171904_1(BC171904|pid:none) Homo sapiens transmembrane protein...    32   9.4
Z81058_6(Z81058|pid:none) Caenorhabditis elegans Cosmid F11E6, c...    32   9.4

>AC116984_27(AC116984|pid:none) Dictyostelium discoideum chromosome
           2 map 2567470-3108875 strain AX4, complete sequence.
          Length = 243

 Score =  272 bits (695), Expect = 5e-72
 Identities = 144/188 (76%), Positives = 144/188 (76%)
 Frame = +3

Query: 3   MISSSLKPSVLLWILAXXXXXXXXXXXXXXXXXFHGIRRTVPYISDTIDFSPESCIGTFF 182
           MISSSLKPSVLLWILA                 FHGIRRTVPYISDTIDFSPESCIGTFF
Sbjct: 1   MISSSLKPSVLLWILAILIPSTLITTYTLTVLLFHGIRRTVPYISDTIDFSPESCIGTFF 60

Query: 183 ISISAFLVFIVVFVKHXXXXXXXXXXXXXXXXXXXXXXXXXXXRAKMLNRISTFLGLICG 362
           ISISAFLVFIVVFVKH                           RAKMLNRISTFLGLICG
Sbjct: 61  ISISAFLVFIVVFVKHFLLQNNINQNFNIDIILNENENEKKKNRAKMLNRISTFLGLICG 120

Query: 363 VCIHGVSSFQYHNTGLVHSIFAASFFFTGFIYIFTQTYLDHKFSKLPKRILILRRVISLT 542
           VCIHGVSSFQYHNTGLVHSIFAASFFFTGFIYIFTQTYLDHKFSKLPKRILILRRVISLT
Sbjct: 121 VCIHGVSSFQYHNTGLVHSIFAASFFFTGFIYIFTQTYLDHKFSKLPKRILILRRVISLT 180

Query: 543 TSVFIGYN 566
           TSVFIGYN
Sbjct: 181 TSVFIGYN 188

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3268448
Number of Hits to DB: 656,024,521
Number of extensions: 10024901
Number of successful extensions: 29042
Number of sequences better than 10.0: 29
Number of HSP's gapped: 29028
Number of HSP's successfully gapped: 50
Length of query: 190
Length of database: 1,061,185,681
Length adjustment: 121
Effective length of query: 69
Effective length of database: 665,703,473
Effective search space: 45933539637
Effective search space used: 45933539637
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 30 (16.2 bits)

 psg: 0.97  gvh: 0.63  alm: 0.17  top: 0.43  tms: 0.33  mit: 0.49  mip: 0.07
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.33  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 1.00  m3b: 0.00  m_ : 0.00 

	 28.0 %: mitochondrial
	 24.0 %: endoplasmic reticulum
	 20.0 %: plasma membrane
	  8.0 %: extracellular, including cell wall
	  4.0 %: cytoplasmic
	  4.0 %: Golgi
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system
	  4.0 %: nuclear

>> prediction for Contig-U04751-1 is mit