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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U04747-1
Contig ID Contig-U04747-1
Contig update 2001. 8.29
Contig sequence 
>Contig-U04747-1 (Contig-U04747-1Q) /CSM_Contig/Contig-U04747-1Q.Seq.d
CACAAAATAAAAAATGGAATATAATGAAGAAGATTTTGGACTTTCAAATA
TTGGATTAATTGATGATATTAGAGTTAAAGTTAATAAAATCCCAACTGTA
CAATATACTCCAAAATTTGATAATAAATTATGGTTTATGAATAATAATAA
AGAAAATAAAGAAAATAAAGATAATTTAAATAAAAAACAACAAGAAAAGA
ATAGAAAAGATGGTATAAAGAATAGTCAATTTAAAATTGATTATTTATAT
TCAAGAGGAGAATATAAGCAATGTATTAATGAATTAAATCATTTGAAAAC
ATTGGTTAAATTAAAAAAGAAACAAGATTATAATGATGATATTATAGATA
CAGAGATTAGATGTAATTTCAAATTAAATCAATTTGATAAAGTAATTGAA
TTAATTGCTAATGTTGAAAACACATTACAACTAAAGAATGGTATAACCTA
CCAATTTAAAGATACAAATTTAATTTTCATTTTAGCACAATCATTACACC
TTAAAAATCAATTTACTCAATCAAGAATTCAATATCAACGATGTATTTCA
TTAAATC
Gap no gap
Contig length 557
Chromosome number (1..6, M) 1
Chromosome length 4919822
Start point 2120438
End point 2120995
Strand (PLUS/MINUS) PLUS
Number of clones 1
Number of EST 1
Link to clone list U04747
List of clone(s) 

est1=SSC627F,1,558
Translated Amino Acid sequence 
tk*KMEYNEEDFGLSNIGLIDDIRVKVNKIPTVQYTPKFDNKLWFMNNNKENKENKDNLN
KKQQEKNRKDGIKNSQFKIDYLYSRGEYKQCINELNHLKTLVKLKKKQDYNDDIIDTEIR
CNFKLNQFDKVIELIANVENTLQLKNGITYQFKDTNLIFILAQSLHLKNQFTQSRIQYQR
CISLN
Translated Amino Acid sequence (All Frames) 
Frame A:
hkikngi**rrfwtfkywin**y*s*s**npnctiyski***imvye***rk*rk*r*fk
*kttrke*krwyke*si*n*lfifkrri*amy**iksfenig*ikketrl***yyryrd*
m*fqiksi**sn*inc*c*khittkewynlpi*rykfnfhfstiitp*ksiysiknsist
myfik


Frame B:
tk*KMEYNEEDFGLSNIGLIDDIRVKVNKIPTVQYTPKFDNKLWFMNNNKENKENKDNLN
KKQQEKNRKDGIKNSQFKIDYLYSRGEYKQCINELNHLKTLVKLKKKQDYNDDIIDTEIR
CNFKLNQFDKVIELIANVENTLQLKNGITYQFKDTNLIFILAQSLHLKNQFTQSRIQYQR
CISLN


Frame C:
qnkkwnimkkildfqild*lmilelkliksqlynilqnliinygl*iiikkikkikii*i
knnkkriekmv*rivnlkliiyiqeenisnvlmn*ii*khwln*krnkiimmil*iqrld
visn*inlik*ln*llmlkthyn*rmv*ptnlkiqi*fsf*hnhytlkinllnqefnind
vfh*i
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U04747-1 (Contig-U04747-1Q)
/CSM_Contig/Contig-U04747-1Q.Seq.d
         (557 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U04747-1 (Contig-U04747-1Q) /CSM_Contig/Conti...   664  0.0
Contig-U10168-1 (Contig-U10168-1Q) /CSM_Contig/Conti...    42  6e-04
Contig-U13893-1 (Contig-U13893-1Q) /CSM_Contig/Conti...    38  0.010
Contig-U01347-1 (Contig-U01347-1Q) /CSM_Contig/Conti...    38  0.010
Contig-U12363-1 (Contig-U12363-1Q) /CSM_Contig/Conti...    36  0.039
Contig-U04777-1 (Contig-U04777-1Q) /CSM_Contig/Conti...    36  0.039
Contig-U00742-1 (Contig-U00742-1Q) /CSM_Contig/Conti...    36  0.039
Contig-U14726-1 (Contig-U14726-1Q) /CSM_Contig/Conti...    34  0.15
Contig-U14510-1 (Contig-U14510-1Q) /CSM_Contig/Conti...    34  0.15
Contig-U14309-1 (Contig-U14309-1Q) /CSM_Contig/Conti...    34  0.15

>Contig-U04747-1 (Contig-U04747-1Q) /CSM_Contig/Contig-U04747-1Q.Seq.d
          Length = 557

 Score =  664 bits (335), Expect = 0.0
 Identities = 335/335 (100%)
 Strand = Plus / Plus

                                                                       
Query: 223 tagtcaatttaaaattgattatttatattcaagaggagaatataagcaatgtattaatga 282
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 223 tagtcaatttaaaattgattatttatattcaagaggagaatataagcaatgtattaatga 282

                                                                       
Query: 283 attaaatcatttgaaaacattggttaaattaaaaaagaaacaagattataatgatgatat 342
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 attaaatcatttgaaaacattggttaaattaaaaaagaaacaagattataatgatgatat 342

                                                                       
Query: 343 tatagatacagagattagatgtaatttcaaattaaatcaatttgataaagtaattgaatt 402
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 tatagatacagagattagatgtaatttcaaattaaatcaatttgataaagtaattgaatt 402

                                                                       
Query: 403 aattgctaatgttgaaaacacattacaactaaagaatggtataacctaccaatttaaaga 462
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 aattgctaatgttgaaaacacattacaactaaagaatggtataacctaccaatttaaaga 462

                                                                       
Query: 463 tacaaatttaattttcattttagcacaatcattacaccttaaaaatcaatttactcaatc 522
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 tacaaatttaattttcattttagcacaatcattacaccttaaaaatcaatttactcaatc 522

                                              
Query: 523 aagaattcaatatcaacgatgtatttcattaaatc 557
           |||||||||||||||||||||||||||||||||||
Sbjct: 523 aagaattcaatatcaacgatgtatttcattaaatc 557


 Score =  274 bits (138), Expect = 1e-73
 Identities = 138/138 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   cacaaaataaaaaatggaatataatgaagaagattttggactttcaaatattggattaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   cacaaaataaaaaatggaatataatgaagaagattttggactttcaaatattggattaat 60

                                                                       
Query: 61  tgatgatattagagttaaagttaataaaatcccaactgtacaatatactccaaaatttga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  tgatgatattagagttaaagttaataaaatcccaactgtacaatatactccaaaatttga 120

                             
Query: 121 taataaattatggtttat 138
           ||||||||||||||||||
Sbjct: 121 taataaattatggtttat 138


>Contig-U10168-1 (Contig-U10168-1Q) /CSM_Contig/Contig-U10168-1Q.Seq.d
          Length = 1278

 Score = 42.1 bits (21), Expect = 6e-04
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                            
Query: 285 taaatcatttgaaaacattggttaaattaaaaa 317
           ||||||||| ||||||||||||| || ||||||
Sbjct: 768 taaatcattggaaaacattggttcaaataaaaa 800


>Contig-U13893-1 (Contig-U13893-1Q) /CSM_Contig/Contig-U13893-1Q.Seq.d
          Length = 1750

 Score = 38.2 bits (19), Expect = 0.010
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 46  aaatattggattaattgat 64
           |||||||||||||||||||
Sbjct: 208 aaatattggattaattgat 226


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 18,250
Number of Sequences: 6905
Number of extensions: 18250
Number of successful extensions: 1797
Number of sequences better than 10.0: 582
length of query: 557
length of database: 5,674,871
effective HSP length: 16
effective length of query: 541
effective length of database: 5,564,391
effective search space: 3010335531
effective search space used: 3010335531
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)
dna update 2009. 6.29
Homology vs DNA 
Query= Contig-U04747-1 (Contig-U04747-1Q) /CSM_Contig/Contig-U04747-1Q.Seq.d
         (557 letters)

Database: ddbj_A
           102,105,510 sequences; 101,790,757,118 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU071847) Dictyostelium discoideum slug cDNA, clone SSC627.      220   2e-55  2
(AC116984) Dictyostelium discoideum chromosome 2 map 2567470...    38   4e-04  12
(CP000263) Buchnera aphidicola str. Cc (Cinara cedri), compl...    34   0.008  12
(CP000123) Mycoplasma capricolum subsp. capricolum ATCC 2734...    34   0.012  15
(CL591210) OB__Ba0096I03.r OB__Ba Oryza brachyantha genomic ...    52   0.023  1
(CL583047) OB__Ba0048P18.f OB__Ba Oryza brachyantha genomic ...    52   0.023  1
(CL579508) OB__Ba0037I19.r OB__Ba Oryza brachyantha genomic ...    52   0.023  1
(CL572184) OB__Ba0014E02.r OB__Ba Oryza brachyantha genomic ...    52   0.023  1
(CP000866) Nitrosopumilus maritimus SCM1, complete genome.         34   0.050  2
(EK579114) 1095521388009 Global-Ocean-Sampling_GS-32-01-01-1...    40   0.058  3
(FF800116) XABT92825.fwd Gateway compatible cien cDNA librar...    40   0.072  2
(FK076478) XABT133791.b1 Gateway compatible cien cDNA librar...    40   0.072  2
(AC171782) Macaca mulatta clone CH250-373D5, WORKING DRAFT S...    42   0.10   3
(AC009148) Homo sapiens chromosome 16 clone RP11-55K13, comp...    40   0.10   4
(AC204091) Rhesus Macaque  BAC CH250-507G18 () complete sequ...    40   0.10   4
(AC136953) Medicago truncatula chromosome 8 clone mth2-20h6,...    36   0.12   6
(AC116956) Dictyostelium discoideum chromosome 2 map 1418423...    42   0.12   7
(AM285304) Spiroplasma citri GII3-3X chromosome, contig Cont...    32   0.13   11
(AF273333) Lycopersicon esculentum clone BAC 19, complete se...    40   0.19   5
(AC226504) Solanum lycopersicum chromosome 2 clone C02HBa010...    40   0.19   5
(CT573193) Zebrafish DNA sequence from clone DKEY-105D16 in ...    40   0.22   6
(CU469464) Candidatus Phytoplasma mali strain AT complete ch...    32   0.30   14
(FJ546412) Syntrichia ruralis chloroplast, complete genome.        34   0.35   6
(AC230570) Bos taurus clone CH240-504L15, WORKING DRAFT SEQU...    48   0.36   1
(AC223312) Bos taurus clone CH240-423D19, WORKING DRAFT SEQU...    48   0.36   1
(AC164369) Bos taurus clone CH240-133C10, *** SEQUENCING IN ...    48   0.36   1
(CC515438) CH240_360J3.TARBAC13P2 CHORI-240 Bos taurus genom...    48   0.36   1
(AC190806) Zea mays chromosome unknown clone ZMMBBb-501K7; Z...    42   0.40   2
(AC117070) Dictyostelium discoideum chromosome 2 map 2097701...    32   0.46   7
(AC169820) Macaca mulatta clone CH250-107J7, WORKING DRAFT S...    42   0.49   2
(CU457797) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    36   0.55   7
(AC205682) Solanum lycopersicum chromosome 5 clone C05HBa019...    40   0.66   5
(Z83850) Human DNA sequence from clone RP1-82J11 on chromoso...    40   0.73   4
(EJ487572) 1095403514780 Global-Ocean-Sampling_GS-28-01-01-1...    40   0.74   2
(CR456634) Wallaby DNA sequence *** SEQUENCING IN PROGRESS *...    36   0.74   4
(CW954868) TcB44.3_F01_SP6 Tribolium BAC library Tribolium c...    32   0.75   3
(AC016917) Drosophila melanogaster clone RP98-1K12, *** SEQU...    34   0.89   7
(FM992695) Candida dubliniensis CD36 chromosome R, complete ...    36   0.93   16
(BX511229) Zebrafish DNA sequence from clone CH211-194H2 in ...    40   0.95   6
(AC034174) Homo sapiens chromosome 8 clone RP11-713C9, WORKI...    46   0.96   3
(EJ271653) 1095353019349 Global-Ocean-Sampling_GS-27-01-01-1...    32   1.00   3
(AC178893) Strongylocentrotus purpuratus clone R3-3114H17, W...    44   1.00   2
(AE017263) Mesoplasma florum L1 complete genome.                   34   1.4    13
(EF517791) Solanum melongena BAC 77N19, complete sequence.         40   1.4    4
(AC154404) Mus musculus BAC clone RP24-244M4 from 14, comple...    46   1.4    1
(CR382139) Debaryomyces hansenii strain CBS767 chromosome G ...    46   1.4    1
(AC090450) Homo sapiens chromosome 8, clone RP11-242M12, com...    46   1.4    1
(AC087173) Homo sapiens chromosome 8, clone RP11-713C9, comp...    46   1.4    1
(ER791365) PPTHK85TR Solanum tuberosum RHPOTKEY BAC ends Sol...    46   1.4    1
(ER350691) 1092346005725 Global-Ocean-Sampling_GS-34-01-01-1...    46   1.4    1
(EK067110) 1092960138843 Global-Ocean-Sampling_GS-31-01-01-1...    46   1.4    1
(EJ287344) 1095368031067 Global-Ocean-Sampling_GS-27-01-01-1...    46   1.4    1
(DX540356) GH_MBb0089E17f GH_MBb Gossypium hirsutum genomic ...    46   1.4    1
(DU716127) pyo47b11.g1 HK104 Caenorhabditis briggsae genomic...    46   1.4    1
(CZ447482) MCF727c11TR Human MCF7 breast cancer cell line li...    46   1.4    1
(AG279716) Mus musculus molossinus DNA, clone:MSMg01-050L15....    46   1.4    1
(DW280812) UI-S-GU0-adp-h-18-0-UI.s1 UI-S-GU0 Euprymna scolo...    46   1.4    1
(DW272787) UI-S-GS1-acq-m-17-0-UI.s1 UI-S-GS1 Euprymna scolo...    46   1.4    1
(DW267619) UI-S-GN1-aca-o-14-0-UI.s1 UI-S-GN1 Euprymna scolo...    46   1.4    1
(DW256491) UI-S-GB1-aan-b-16-0-UI.s1 UI-S-GB1 Euprymna scolo...    46   1.4    1
(DW256472) UI-S-GB1-aan-n-19-0-UI.s1 UI-S-GB1 Euprymna scolo...    46   1.4    1
(DW256463) UI-S-GB1-aan-l-19-0-UI.s1 UI-S-GB1 Euprymna scolo...    46   1.4    1
(AC060775) Homo sapiens chromosome 8, clone RP11-678D18, com...    44   1.5    5
(AL445564) Mycoplasma pulmonis (strain UAB CTIP) complete ge...    40   1.5    6
(FM992689) Candida dubliniensis CD36 chromosome 2, complete ...    36   1.7    15
(FM992688) Candida dubliniensis CD36 chromosome 1, complete ...    40   1.8    16
(EJ580675) 1092960160539 Global-Ocean-Sampling_GS-29-01-01-1...    36   1.8    2
(AE014851) Plasmodium falciparum 3D7 chromosome 12, section ...    34   1.8    6
(AC232226) Homo sapiens chromosome 4 clone ABC12-46697400F1,...    38   1.9    2
(AP000731) Arabidopsis thaliana genomic DNA, chromosome 3, B...    40   2.1    2
(CR382400) Plasmodium falciparum chromosome 6, complete sequ...    38   2.1    6
(CP001056) Clostridium botulinum B str. Eklund 17B, complete...    32   2.1    18
(BX323886) Zebrafish DNA sequence from clone CH211-127B11 in...    44   2.2    5
(CT337176) Sus scrofa genomic clone CH242-32P19, genomic sur...    34   2.3    3
(DX862936) ZMMBLi0001B03.r ZMMBLi Zea mays genomic clone ZMM...    36   2.4    2
(CC617616) OGUJQ21TH ZM_0.7_1.5_KB Zea mays genomic clone ZM...    36   2.5    2
(AC186773) Pongo abelii chromosome UNK clone CH276-99H12, co...    38   2.5    8
(ER409607) 1095368013413 Global-Ocean-Sampling_GS-34-01-01-1...    38   2.6    2
(EJ478610) 1095403456949 Global-Ocean-Sampling_GS-28-01-01-1...    32   2.7    3
(CP001184) Ureaplasma urealyticum serovar 10 str. ATCC 33699...    30   2.7    15
(BX005220) Zebrafish DNA sequence from clone DKEY-82D4 in li...    34   2.8    5
(AP010078) Lotus japonicus genomic DNA, clone: LjT33M20, TM0...    34   2.8    2
(AF262040) Arabidopsis thaliana BAC T10I18.                        44   2.9    3
(AC180039) Strongylocentrotus purpuratus clone R3-23P3, WORK...    44   2.9    5
(AC116986) Dictyostelium discoideum chromosome 2 map 2234041...    36   3.0    7
(AL662913) Human DNA sequence *** SEQUENCING CANCELLED *** f...    36   3.1    4
(AC158498) Medicago truncatula chromosome 2 BAC clone mth2-6...    36   3.2    5
(BX293980) Mycoplasma mycoides subsp. mycoides SC str. PG1, ...    44   3.3    15
(AC178269) Strongylocentrotus purpuratus clone R3-3093B21, W...    44   3.3    4
(BI509162) BB170003B10B02.5 Bee Brain Normalized/Subtracted ...    30   3.5    3
(ET073237) QM0AAA8AD07RM1 CCL1 Citrus clementina genomic clo...    34   3.9    2
(BX000460) Zebrafish DNA sequence from clone CH211-15E22 in ...    32   4.0    6
(AL591479) Human DNA sequence from clone RP11-154P18 on chro...    36   4.5    3
(AC180764) Strongylocentrotus purpuratus clone R3-3080J22, W...    36   4.7    4
(AC202518) Medicago truncatula clone mth2-6p16, WORKING DRAF...    34   4.7    6
(AM054708) Isotricha prostoma EST, clone Ip03_G07.                 34   4.7    3
(AC024672) Homo sapiens chromosome 4 clone RP11-572L13 map 4...    36   4.8    4
(AM489319) Vitis vinifera contig VV78X002097.2, whole genome...    30   4.9    4
(FP236400) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    36   5.2    4
(AC233575) Medicago truncatula clone mth2-167h13, WORKING DR...    36   5.2    7
(EV420071) 210784390 NGP Nasonia giraulti cDNA clone 134K13 ...    40   5.4    2
(CR936327) Medicago truncatula chromosome 5 clone mte1-68g1,...    40   5.6    4
(BX324215) Zebrafish DNA sequence from clone DKEY-42L16 in l...    44   5.6    1
(AL831726) Zebrafish DNA sequence from clone DKEY-49N23 in l...    44   5.6    1
(GF096484) 61153 Glycine max young leaves DNA Glycine max ST...    44   5.6    1
(AL627079) Mouse DNA sequence from clone RP23-138E16 on chro...    44   5.6    1
(AC186278) Spermophilus tridecemlineatus clone VMRC20-243P12...    44   5.6    1
(AC125109) Mus musculus BAC clone RP24-232H5 from chromosome...    44   5.6    1
(AY125002) Alpinia galanga NADH dehydrogenase subunit F (ndh...    44   5.6    1
(AY125000) Riedelia sp. LMP-2002 NADH dehydrogenase subunit ...    44   5.6    1
(AM456601) Vitis vinifera contig VV78X139261.29, whole genom...    44   5.6    1
(AC021198) Sequence of BAC F14D7 from Arabidopsis thaliana c...    44   5.6    1
(AC005561) Arabidopsis thaliana chromosome 2 clone T9F8 map ...    44   5.6    1
(GC571761) Sequence 9614 from patent US 7420044.                   44   5.6    1
(Z29094) Caenorhabditis elegans Cosmid C07A9.                      44   5.6    1
(AL359378) Human DNA sequence from clone RP11-203H2 on chrom...    44   5.6    1
(AL163281) Homo sapiens chromosome 21 segment HS21C081.            44   5.6    1
(AF064862) Homo sapiens chromosome 21 clone PAC 31P10 map 21...    44   5.6    1
(AC233708) Homo sapiens FOSMID clone ABC10-43623900I17 from ...    44   5.6    1
(AB209136) Homo sapiens mRNA for Down syndrome cell adhesion...    44   5.6    1
(AC157961) Strongylocentrotus purpuratus clone R3-4002E12, W...    44   5.6    1
(AC138086) Homo sapiens clone RP11-222P11, WORKING DRAFT SEQ...    44   5.6    1
(AC128447) Rattus norvegicus clone CH230-205O22, WORKING DRA...    44   5.6    1
(AC125831) Rattus norvegicus clone CH230-282G18, *** SEQUENC...    44   5.6    1
(AC113899) Rattus norvegicus clone CH230-329K9, *** SEQUENCI...    44   5.6    1
(AC102949) Homo sapiens clone RP11-12K13, LOW-PASS SEQUENCE ...    44   5.6    1
(AC095834) Rattus norvegicus clone CH230-10E3, *** SEQUENCIN...    44   5.6    1
(AC091004) Homo sapiens chromosome 8 clone RP11-374E1 map 8,...    44   5.6    1
(AC026821) Homo sapiens chromosome 9 clone RP11-146H11 map 9...    44   5.6    1
(CT009668) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    44   5.6    1
(AL512373) Human DNA sequence *** SEQUENCING CANCELLED *** f...    44   5.6    1
(AC197131) Zea mays chromosome 10 clone ZMMBBb-631H14; ZMMBB...    44   5.6    1
(AC178892) Strongylocentrotus purpuratus clone R3-3114G18, W...    44   5.6    1
(AC176860) Strongylocentrotus purpuratus clone R3-3120P23, W...    44   5.6    1
(AC168412) Strongylocentrotus purpuratus clone R3-4002E12, W...    44   5.6    1
(AC021190) Homo sapiens chromosome 12 clone RP11-762A12, WOR...    44   5.6    1
(AQ958236) LERAW25TR LERA Arabidopsis thaliana genomic clone...    44   5.6    1
(FH684701) CHO_OF5073xi24r1.ab1 CHO_OF5 Nicotiana tabacum ge...    44   5.6    1
(FH240217) CHO_OF3105xk02r1.ab1 CHO_OF3 Nicotiana tabacum ge...    44   5.6    1
(ER567096) 1093015774336 Global-Ocean-Sampling_GS-36-01-01-2...    44   5.6    1
(ER497445) 1093015353974 Global-Ocean-Sampling_GS-35-01-01-1...    44   5.6    1
(EJ687740) 1092955201521 Global-Ocean-Sampling_GS-30-02-01-1...    44   5.6    1
(ED635928) GM_WBa0042I24.r GM_WBa Glycine max genomic clone ...    44   5.6    1
(DU264298) 1098574270849 CHORI-243 Ovis aries genomic clone ...    44   5.6    1
(CZ302310) ZMMBF0078E06r ZMMBF Zea mays genomic clone ZMMBF0...    44   5.6    1
(CR012336) Forward strand read from insert in 3'HPRT inserti...    44   5.6    1
(BZ555016) pacs1-60_4972.y2 pacs1-60 Pseudomonas aeruginosa ...    44   5.6    1
(BX207224) Danio rerio genomic clone DKEY-259N16, genomic su...    44   5.6    1
(BX158068) Danio rerio genomic clone DKEY-126A17, genomic su...    44   5.6    1
(AG392916) Mus musculus molossinus DNA, clone:MSMg01-211A09....    44   5.6    1
(DY678397) TT1AV35TV Tetrahymena thermophila EST library str...    44   5.6    1
(DV611262) EST1214258 Glossina morsitans morsitans Fat body ...    44   5.6    1
(DV604453) EST1207449 Glossina morsitans morsitans Fat body ...    44   5.6    1
(DV602055) EST1205050 Glossina morsitans morsitans Fat body ...    44   5.6    1
(DA355562) Homo sapiens cDNA clone BRSTN2000474, 5' end, mRN...    44   5.6    1
(CR426593) Xenopus tropicalis EST, clone TTbA070d24 3'.            44   5.6    1
(CR426592) Xenopus tropicalis EST, clone TTbA070d24 5'.            44   5.6    1
(BX488668) Homo sapiens mRNA; EST DKFZp686D08273_r1  (from c...    44   5.6    1
(AA932822) oo60h11.s1 NCI_CGAP_Lu5 Homo sapiens cDNA clone I...    44   5.6    1
(BF057993) 7i66d04.y1 NCI_CGAP_Brn20 Homo sapiens cDNA clone...    44   5.6    1
(BF055712) 7i68h08.y1 NCI_CGAP_Brn20 Homo sapiens cDNA clone...    44   5.6    1
(BF054703) 7i70c04.y1 NCI_CGAP_Brn20 Homo sapiens cDNA clone...    44   5.6    1
(BE503065) hz83a09.x1 NCI_CGAP_Lu24 Homo sapiens cDNA clone ...    44   5.6    1
(FM959153) Glossina morsitans morsitans EST, clone GMsg15c10...    44   5.6    1
(FE354440) CBIC674.rev CBIC_Daphnia_pulex_Chosen_One_Library...    44   5.6    1
(CP000084) Candidatus Pelagibacter ubique HTCC1062, complete...    36   5.7    14
(CP000942) Ureaplasma parvum serovar 3 str. ATCC 27815, comp...    32   5.8    13
(AF222894) Ureaplasma parvum serovar 3 str. ATCC 700970, com...    32   5.8    13
(BS000197) Pan troglodytes chromosome 22 clone:PTB-108M20, m...    38   6.0    6
(AE014841) Plasmodium falciparum 3D7 chromosome 11 section 6...    32   6.3    9
(AC145249) Macropus eugenii clone ME_KBa-103M1, complete seq...    34   6.4    7
(AC114263) Dictyostelium discoideum chromosome 2 map 215673-...    32   6.5    7
(BX548174) Prochlorococcus marinus MED4 complete genome.           36   6.5    14
(DB150087) Homo sapiens cDNA clone THYMU3026592, 5' end, mRN...    36   6.8    2
(AC189390) Brassica rapa subsp. pekinensis clone KBrB053L06,...    38   6.9    4
(AL954838) Zebrafish DNA sequence from clone DKEY-12B15 in l...    40   7.0    6
(AL935307) Zebrafish DNA sequence from clone DKEY-63P22.           38   7.4    5
(BQ739414) uis21-1 Pb sgSpz/ooSpz subtraction library Plasmo...    30   7.6    3
(CR354394) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    38   7.6    3
(AC117176) Dictyostelium discoideum chromosome 2 map 5018074...    32   7.7    9
(EI342686) GM_WBc0087C19.r GM_WBc Glycine max genomic clone ...    34   7.8    3
(AF001315) Dictyostelium discoideum MipAp (mipA) gene, parti...    36   7.9    2
(AC096992) Homo sapiens 3 BAC RP11-731C17 (Roswell Park Canc...    34   7.9    4
(AF063866) Melanoplus sanguinipes entomopoxvirus, complete g...    32   7.9    10
(EK426101) 1095516020308 Global-Ocean-Sampling_GS-31-01-01-1...    36   8.0    2
(AC145393) Mus musculus BAC clone RP24-208N6 from Y, complet...    34   8.1    5
(AP009180) Candidatus Carsonella ruddii PV DNA, complete gen...    32   8.1    7
(AC186777) Trichinella spiralis chromosome UNK clone TS195-3...    34   8.2    7
(BA000021) Wigglesworthia glossinidia endosymbiont of Glossi...    32   8.3    13
(AC141039) Rattus norvegicus clone CH230-470E4, WORKING DRAF...    36   8.3    4
(AM660357) Entamoeba moshkovskii FIC GSS, clone mosh098e07.q1k.    34   8.4    2
(CL389985) RPCI44_287P4.f RPCI-44 Sus scrofa genomic clone R...    34   8.5    2
(AC152424) Medicago truncatula chromosome 8 clone mth2-58m16...    34   8.5    5
(ER372299) 1093025101929 Global-Ocean-Sampling_GS-34-01-01-1...    34   8.6    2
(CP000061) Aster yellows witches'-broom phytoplasma AYWB, co...    40   8.7    11
(EJ795270) 1093017397614 Global-Ocean-Sampling_GS-30-02-01-1...    40   9.2    2
(CT556277) A BAC library has been constructed from cultivar ...    30   9.3    3
(AC139801) Homo sapiens chromosome 5 clone RP11-1325E9, WORK...    38   9.3    5
(AF362474) Arabidopsis thaliana Ler glycine-rich protein gen...    42   9.4    3
(AB126004) Periplaneta fuliginosa mitochondrial DNA, complet...    34   9.4    3
(AC181877) Strongylocentrotus purpuratus clone R3-1019A9, WO...    38   9.4    6
(AC108715) Homo sapiens 3 BAC RP11-184F3 (Roswell Park Cance...    34   9.5    5
(EK201819) 1095460058671 Global-Ocean-Sampling_GS-31-01-01-1...    38   9.6    2
(BV651613) S217P6129FB12.T0 Noemie Pan troglodytes troglodyt...    40   9.6    2
(AC024996) Homo sapiens chromosome 8, clone RP11-697C18, com...    36   9.7    5
(AM466940) Vitis vinifera contig VV78X144626.6, whole genome...    36   9.7    4
(AB262484) Schedorhinotermes sp. Au05Sc mitochondrial gene f...    38   9.7    2
(AC112104) Rattus norvegicus clone CH230-298F6, *** SEQUENCI...    40   9.8    2
(EJ228304) 1092402534929 Global-Ocean-Sampling_GS-27-01-01-1...    34   9.9    2
(AL445563) Mycoplasma pulmonis (strain UAB CTIP) complete ge...    36   9.9    9

>(AU071847) Dictyostelium discoideum slug cDNA, clone SSC627.
          Length = 240

 Score =  220 bits (111), Expect(2) = 2e-55
 Identities = 111/111 (100%)
 Strand = Plus / Plus


Query: 1   cacaaaataaaaaatggaatataatgaagaagattttggactttcaaatattggattaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   cacaaaataaaaaatggaatataatgaagaagattttggactttcaaatattggattaat 60


Query: 61  tgatgatattagagttaaagttaataaaatcccaactgtacaatatactcc 111
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  tgatgatattagagttaaagttaataaaatcccaactgtacaatatactcc 111

 Score = 32.2 bits (16), Expect(2) = 2e-55
 Identities = 16/16 (100%)
 Strand = Plus / Plus


Query: 225 gtcaatttaaaattga 240
           ||||||||||||||||
Sbjct: 225 gtcaatttaaaattga 240

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 102105510
Number of Hits to DB: 752,732,216
Number of extensions: 54672026
Number of successful extensions: 4798636
Number of sequences better than 10.0: 213
Length of query: 557
Length of database: 101,790,757,118
Length adjustment: 23
Effective length of query: 534
Effective length of database: 99,442,330,388
Effective search space: 53102204427192
Effective search space used: 53102204427192
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7.31
Homology vs Protein 
Query= Contig-U04747-1 (Contig-U04747-1Q) /CSM_Contig/Contig-U04747-1Q.Seq.d
         (557 letters)

Database: nrp_A
           3,268,448 sequences; 1,061,185,681 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014187_684(AE014187|pid:none) Plasmodium falciparum 3D7 chromo...    37   0.46
AM398681_1788(AM398681|pid:none) Flavobacterium psychrophilum JI...    35   1.8
CR767821_400(CR767821|pid:none) Ehrlichia ruminantium strain Wel...    34   2.3
CP000312_2489(CP000312|pid:none) Clostridium perfringens SM101, ...    34   3.0
CP000393_407(CP000393|pid:none) Trichodesmium erythraeum IMS101,...    33   3.9
AL844504_91(AL844504|pid:none) Plasmodium falciparum 3D7 chromos...    33   3.9
(Q8IE51) RecName: Full=Uncharacterized protein MAL13P1.147;  &AL...    33   5.1
AY501935_1(AY501935|pid:none) Campylobacter jejuni strain TGH 90...    33   5.1
CP001517_30(CP001517|pid:none) Borrelia sp. SV1 plasmid SV1_cp32...    33   6.7
B70190(B70190)conserved hypothetical protein BB0723 - Lyme disea...    33   6.7
CP000728_2965(CP000728|pid:none) Clostridium botulinum F str. La...    32   8.7
AE013599_898(AE013599|pid:none) Drosophila melanogaster chromoso...    32   8.7
(Q58718) RecName: Full=DNA double-strand break repair rad50 ATPa...    32   8.7
AM412317_3065(AM412317|pid:none) Clostridium botulinum A str. AT...    32   8.7
AK341669_1(AK341669|pid:none) Acyrthosiphon pisum ACYPI002804 mR...    32   8.7
CP001638_1002(CP001638|pid:none) Geobacillus sp. WCH70, complete...    32   8.7

>AE014187_684(AE014187|pid:none) Plasmodium falciparum 3D7 chromosome
            14, complete sequence.  &AE014827_42(AE014827|pid:none)
          Length = 1313

 Score = 36.6 bits (83), Expect = 0.46
 Identities = 26/98 (26%), Positives = 48/98 (48%), Gaps = 7/98 (7%)
 Frame = +2

Query: 239  DYLYSRGEYKQCINELNHLKTLVKLK--KKQDYNDDIIDTEIR-----CNFKLNQFDKVI 397
            +Y+    +Y    N LN +KTL+K    KK+ Y ++  D +I       N  ++ ++K
Sbjct: 1212 EYIQIIKQYIHIFNLLNQIKTLIKNVEWKKKKYTNNFQDIQINDIITDQNIFIHLYNKCT 1271

Query: 398  ELIANVENTLQLKNGITYQFKDTNLIFILAQSLHLKNQ 511
             LI N+ + +QL       +KD+  ++ +  +  LK Q
Sbjct: 1272 HLITNIHD-IQLNENYQNIYKDSTQLYDIINNHKLKEQ 1308

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3268448
Number of Hits to DB: 563,748,312
Number of extensions: 8219471
Number of successful extensions: 18946
Number of sequences better than 10.0: 16
Number of HSP's gapped: 18938
Number of HSP's successfully gapped: 16
Length of query: 185
Length of database: 1,061,185,681
Length adjustment: 121
Effective length of query: 64
Effective length of database: 665,703,473
Effective search space: 42605022272
Effective search space used: 42605022272
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 30 (16.2 bits)
PSORT 

 psg: 0.75  gvh: 0.27  alm: 0.52  top: 0.53  tms: 0.00  mit: 0.17  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: nuclear
	 28.0 %: cytoplasmic
	  8.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for Contig-U04747-1 is nuc
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 1
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0