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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U01015-1
Contig ID Contig-U01015-1
Contig update 2001. 8.29
Contig sequence 
>Contig-U01015-1 (Contig-U01015-1Q) /CSM_Contig/Contig-U01015-1Q.Seq.d
TAATTTGAGGAATATTTGAATTTGGGTCNCNTTCATCAATGATTGTATTT
AATAGTTCAGCAGCTTCCCATAATCCCATTTTTANACTTGNATCCAATTG
AGAATATTGTTTNTTCTTTTCAGTTGCATAATCATATGTTTGATAAGTAT
GACTATTCCTATAAGCTTCTGATACTCTATCTTCNCTATTTTCATAATTT
NTAAATTCTTCAACCTCTTTAGTAATTTCAAATCCAGTTTTTAATGAATT
ATCATGTTTAATTTCNCNTGTTGATGNTGTTGTTCTAGTTTCTATCNTTT
TTTTTTTAAGATTTAGTTTTTTAGTTTTTTAGTTTTTTTAGTTTTTTAGT
TTTTTTAGTTTTTTAGTTTTTTAGTTTTTCAGTTTTTCAGTTTTTTTTTT
AATTTGTATGATATAAATTATAGTAATACTAAAAAATGTAATTTTAAAAA
TAAAAAAAAGAGATAAT----------TTTCATTTAACTGGTTTCATTCA
TGATCTTGGTAAAGTTTTATTATCTAAAAAATTTAAAGAACAACCACAAT
GGGCAACTGTTGGTGACACTTTTCCATTAGGTTGTAAATTTGATGAAAGT
AATATTTTTTATGAATTTTTTAAAATGAATCCAGATTATAATGATAGCAA
ATATAATAGTGAATGTGGTATATATAAAAAGAATATTGGATTGGAAAATG
TTACAATGAGTTGGGGACATGATGAATACTTTTATTTGGTTTGTGTTGGA
AATAAATGTTTATTACCTAAAGAATCGCTTTATATGATTAGATTCCATTC
TTTTTATCCATGGCATAGACATAATAAATATACTCATTTAACAAATGAAG
AAGATGAAAAAATGCTAAATTGGGTAAAGGAATTTAATAAATTTGATTTA
TATTCAAAAGACAGTGAGCCAGTGGATGTTGAATCTTTAAAACCATATTA
TCAATCTTTAATTTCAAAATATTTCCCAAACGAACTTCATTGGTGATTAA
AATTTTCACTCTCCCCAATTAATGCACAACTTTGTGTAAATTCAAAGAAA
AAAAATAAAATAAAAAAAATAAAAAAAAAAGAAAAGAAAAATTAATGAAA
AAAAAAAATAAAAAAACAAAAAATAAAAAAAATAATAAAAAAAGATATAT
AATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Gap gap included
Contig length 1186
Chromosome number (1..6, M) 5
Chromosome length 5062330
Start point 3683444
End point 3682966
Strand (PLUS/MINUS) MINUS
Number of clones 3
Number of EST 4
Link to clone list U01015
List of clone(s) 

est1=SFD227Z,-2,100
est2=SFJ548F,28,467
est3=SFJ548Z,468,1079
est4=SSE539E,758,1187
Translated Amino Acid sequence 
i*gifefgsxssmivfnssaashnpifxlxsn*eycxffsva*syv**v*lfl*asdtls
slfs*fxnsstslvisnpvfnelsclisxvdxvvlvsixfflrfsflvf*ff*ffsffsf
lvf*ffsfsvfflicmi*IIVILKNVILKIKKRDN---

---FHLTGFIHDLGKVLLSKKFKEQPQWATVGDTFPLGCKFDESNIFYEFFKMNPDYNDS
KYNSECGIYKKNIGLENVTMSWGHDEYFYLVCVGNKCLLPKESLYMIRFHSFYPWHRHNK
YTHLTNEEDEKMLNWVKEFNKFDLYSKDSEPVDVESLKPYYQSLISKYFPNELHW*lkfs
lspinaqlcvnskkknkikkikkkekkn**kkkikkqkikkiikkdi**kkkkkkkkkkk
kk
Translated Amino Acid sequence (All Frames) 
Frame A:
*feeylnlgxxhq*lylivqqlpiipflxlxpienivxsfqlhnhmfdkydysykllily
lxyfhnx*ilqpl**fqiqflmnyhv*fxxlmxlf*flsfff*dlvf*ffsffsflvflv
f*ffsfsvfqfff*fv*ykl**y*km*f*k*kkei---

---FHLTGFIHDLGKVLLSKKFKEQPQWATVGDTFPLGCKFDESNIFYEFFKMNPDYNDS
KYNSECGIYKKNIGLENVTMSWGHDEYFYLVCVGNKCLLPKESLYMIRFHSFYPWHRHNK
YTHLTNEEDEKMLNWVKEFNKFDLYSKDSEPVDVESLKPYYQSLISKYFPNELHW*lkfs
lspinaqlcvnskkknkikkikkkekkn**kkkikkqkikkiikkdi**kkkkkkkkkkk
kk

Frame B:
nlrni*iwvxfindci**fssfp*shfxtxiqlrilfxlfsciiiclismtipisf*ysi
fxifiixkffnlfsnfkssf**iimfnfxc*xccssfyxfffki*ffsflvflvf*ff*f
fsflvfqffsfffnlydinysntkkcnfknkkkr*---

---fi*lvsfmilvkfyylknlknnhngqllvtlfh*vvnlmkviffmnflk*iqiimia
niivnvvyikrildwkmlq*vgdmmntfiwfvleinvyylknrfi*ldsilfihgidiin
ili*qmkkmkkc*ig*rnlinliyiqktvsqwmlnl*nhiinl*fqnisqtnfigd*nfh
spqlmhnfv*iqrkkik*kk*kkkkrkinekkk*knkk*kk**kkiynkkkkkkkkkkkk
kk

Frame C:
i*gifefgsxssmivfnssaashnpifxlxsn*eycxffsva*syv**v*lfl*asdtls
slfs*fxnsstslvisnpvfnelsclisxvdxvvlvsixfflrfsflvf*ff*ffsffsf
lvf*ffsfsvfflicmi*IIVILKNVILKIKKRDN---

---sfnwfhs*sw*sfii*ki*rtttmgncw*hfsirl*i**k*yfl*if*nesrl***q
i***mwyi*keywigkcynelgt**illfglcwk*mfit*rialyd*ipfflsma*t**i
ysfnk*rr*knaklgkgi**i*fifkrq*asgc*ifktilsifnfkifpkrtslvikift
lpn*cttlckfkekk*nkknkkkrkeklmkkknkktknkknnkkryiikkkkkkkkkkkk
kk
own update 2004. 6. 7
Homology vs CSM-cDNA 
Query= Contig-U01015-1 (Contig-U01015-1Q)
/CSM_Contig/Contig-U01015-1Q.Seq.d
         (1196 letters)

Database: CSM
           8361 sequences; 7,895,291 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U01015-1 (Contig-U01015-1Q) /CSM_Contig/Conti...  1122  0.0
Contig-U11414-1 (Contig-U11414-1Q) /CSM_Contig/Conti...    38  0.030
Contig-U05162-1 (Contig-U05162-1Q) /CSM_Contig/Conti...    38  0.030
Contig-U12575-1 (Contig-U12575-1Q) /CSM_Contig/Conti...    36  0.12
Contig-U10328-1 (Contig-U10328-1Q) /CSM_Contig/Conti...    36  0.12
Contig-U09547-1 (Contig-U09547-1Q) /CSM_Contig/Conti...    36  0.12
Contig-U05936-1 (Contig-U05936-1Q) /CSM_Contig/Conti...    36  0.12
Contig-U00749-1 (Contig-U00749-1Q) /CSM_Contig/Conti...    36  0.12
Contig-U00609-1 (Contig-U00609-1Q) /CSM_Contig/Conti...    36  0.12
Contig-U14473-1 (Contig-U14473-1Q) /CSM_Contig/Conti...    34  0.47

>Contig-U01015-1 (Contig-U01015-1Q) /CSM_Contig/Contig-U01015-1Q.Seq.d
          Length = 1196

 Score = 1122 bits (566), Expect = 0.0
 Identities = 566/566 (100%)
 Strand = Plus / Plus

                                                                        
Query: 478  tttcatttaactggtttcattcatgatcttggtaaagttttattatctaaaaaatttaaa 537
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478  tttcatttaactggtttcattcatgatcttggtaaagttttattatctaaaaaatttaaa 537

                                                                        
Query: 538  gaacaaccacaatgggcaactgttggtgacacttttccattaggttgtaaatttgatgaa 597
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538  gaacaaccacaatgggcaactgttggtgacacttttccattaggttgtaaatttgatgaa 597

                                                                        
Query: 598  agtaatattttttatgaattttttaaaatgaatccagattataatgatagcaaatataat 657
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598  agtaatattttttatgaattttttaaaatgaatccagattataatgatagcaaatataat 657

                                                                        
Query: 658  agtgaatgtggtatatataaaaagaatattggattggaaaatgttacaatgagttgggga 717
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658  agtgaatgtggtatatataaaaagaatattggattggaaaatgttacaatgagttgggga 717

                                                                        
Query: 718  catgatgaatacttttatttggtttgtgttggaaataaatgtttattacctaaagaatcg 777
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718  catgatgaatacttttatttggtttgtgttggaaataaatgtttattacctaaagaatcg 777

                                                                        
Query: 778  ctttatatgattagattccattctttttatccatggcatagacataataaatatactcat 837
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 778  ctttatatgattagattccattctttttatccatggcatagacataataaatatactcat 837

                                                                        
Query: 838  ttaacaaatgaagaagatgaaaaaatgctaaattgggtaaaggaatttaataaatttgat 897
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 838  ttaacaaatgaagaagatgaaaaaatgctaaattgggtaaaggaatttaataaatttgat 897

                                                                        
Query: 898  ttatattcaaaagacagtgagccagtggatgttgaatctttaaaaccatattatcaatct 957
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 898  ttatattcaaaagacagtgagccagtggatgttgaatctttaaaaccatattatcaatct 957

                                                                        
Query: 958  ttaatttcaaaatatttcccaaacgaacttcattggtgattaaaattttcactctcccca 1017
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 958  ttaatttcaaaatatttcccaaacgaacttcattggtgattaaaattttcactctcccca 1017

                                      
Query: 1018 attaatgcacaactttgtgtaaattc 1043
            ||||||||||||||||||||||||||
Sbjct: 1018 attaatgcacaactttgtgtaaattc 1043


 Score =  527 bits (266), Expect = e-149
 Identities = 296/296 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   taatttgaggaatatttgaatttgggtcncnttcatcaatgattgtatttaatagttcag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   taatttgaggaatatttgaatttgggtcncnttcatcaatgattgtatttaatagttcag 60

                                                                       
Query: 61  cagcttcccataatcccatttttanacttgnatccaattgagaatattgtttnttctttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  cagcttcccataatcccatttttanacttgnatccaattgagaatattgtttnttctttt 120

                                                                       
Query: 121 cagttgcataatcatatgtttgataagtatgactattcctataagcttctgatactctat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 cagttgcataatcatatgtttgataagtatgactattcctataagcttctgatactctat 180

                                                                       
Query: 181 cttcnctattttcataatttntaaattcttcaacctctttagtaatttcaaatccagttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 cttcnctattttcataatttntaaattcttcaacctctttagtaatttcaaatccagttt 240

                                                                   
Query: 241 ttaatgaattatcatgtttaatttcncntgttgatgntgttgttctagtttctatc 296
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 ttaatgaattatcatgtttaatttcncntgttgatgntgttgttctagtttctatc 296


 Score = 58.0 bits (29), Expect = 3e-08
 Identities = 29/29 (100%)
 Strand = Plus / Plus

                                        
Query: 401 aatttgtatgatataaattatagtaatac 429
           |||||||||||||||||||||||||||||
Sbjct: 401 aatttgtatgatataaattatagtaatac 429


>Contig-U11414-1 (Contig-U11414-1Q) /CSM_Contig/Contig-U11414-1Q.Seq.d
          Length = 1931

 Score = 38.2 bits (19), Expect = 0.030
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 840  aacaaatgaagaagatgaa 858
            |||||||||||||||||||
Sbjct: 1769 aacaaatgaagaagatgaa 1751


>Contig-U05162-1 (Contig-U05162-1Q) /CSM_Contig/Contig-U05162-1Q.Seq.d
          Length = 808

 Score = 38.2 bits (19), Expect = 0.030
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                  
Query: 882 atttaataaatttgatttatatt 904
           ||||| |||||||||||||||||
Sbjct: 305 atttactaaatttgatttatatt 283


  Database: CSM
    Posted date:  Jun 7, 2004  8:33 AM
  Number of letters in database: 7,895,291
  Number of sequences in database:  8361
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 21,946
Number of Sequences: 8361
Number of extensions: 21946
Number of successful extensions: 2421
Number of sequences better than 10.0: 267
length of query: 1196
length of database: 7,895,291
effective HSP length: 16
effective length of query: 1180
effective length of database: 7,761,515
effective search space: 9158587700
effective search space used: 9158587700
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2009. 4.21
Homology vs DNA 
Query= Contig-U01015-1 (Contig-U01015-1Q) /CSM_Contig/Contig-U01015-1Q.Seq.d
         (1196 letters)

Database: ddbj_A
           102,105,510 sequences; 101,790,757,118 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ402089) Dictyostelium discoideum cDNA clone:dds20o11, 3' ...  1098   0.0    1
(C92432) Dictyostelium discoideum slug cDNA, clone SSE539.        547   e-151  1
(BJ389886) Dictyostelium discoideum cDNA clone:dds20o11, 5' ...   478   e-139  2
(BJ399744) Dictyostelium discoideum cDNA clone:dds7e08, 3' e...   149   3e-31  1
(EX643853) 256653707 Pea aphid whole body normalized full le...    52   2e-12  3
(FF318913) 280399686 Pea aphid whole body normalized full le...    52   2e-12  3
(EX623354) 255423970 Pea aphid whole body normalized full le...    52   2e-12  3
(FF294976) 279303664 Pea aphid whole body normalized full le...    52   2e-12  3
(DW010276) w10d18_M13F Myzus persicae, tobacco lineage, whol...    48   3e-11  3
(EJ379797) 1092963757056 Global-Ocean-Sampling_GS-28-01-01-1...    46   5e-07  3
(ER573899) 1093015804640 Global-Ocean-Sampling_GS-36-01-01-2...    60   2e-04  1
(ER578556) 1093015823845 Global-Ocean-Sampling_GS-36-01-01-2...    56   0.001  2
(DX447082) BE2003_J19_F IASMA L2 HindIII BAC library Vitis v...    50   0.002  2
(EJ097237) 1095462232829 Global-Ocean-Sampling_GS-26-01-01-1...    40   0.004  2
(AM464720) Vitis vinifera contig VV78X049148.12, whole genom...    50   0.031  2
(EX900629) RS2CA15JQ RS2(RS) Raphanus sativus cDNA 3', mRNA ...    42   0.040  2
(EX761688) RR2CY56JQ RR2(MS) Raphanus raphanistrum subsp. ra...    42   0.041  2
(EY928398) RS1E080JQ RS1(AR) Raphanus sativus var. oleiformi...    42   0.041  2
(EY932739) RS1E080TF RS1(AR) Raphanus sativus var. oleiformi...    42   0.041  2
(AM471072) Vitis vinifera contig VV78X049148.8, whole genome...    48   0.048  2
(AY066705) Schmidtea mediterranea clone HB.21.10g unknown mR...    52   0.050  1
(AC117075) Dictyostelium discoideum chromosome 2 map 5201047...    38   0.067  11
(CP000263) Buchnera aphidicola str. Cc (Cinara cedri), compl...    32   0.068  13
(AM438419) Vitis vinifera contig VV78X195966.6, whole genome...    50   0.074  3
(AC004157) Plasmodium falciparum chromosome 12 clone PFYAC29...    34   0.089  9
(CR940305) M.truncatula DNA sequence from clone MTH2-28N4 on...    44   0.098  4
(AE014825) Plasmodium falciparum 3D7 chromosome 14 section 1...    36   0.11   9
(AE014841) Plasmodium falciparum 3D7 chromosome 11 section 6...    36   0.15   10
(AM910989) Plasmodium knowlesi strain H chromosome 7, comple...    50   0.20   1
(AC230346) Bos taurus clone CH240-511E20, WORKING DRAFT SEQU...    50   0.20   1
(AC169571) Bos taurus clone CH240-199J4, WORKING DRAFT SEQUE...    50   0.20   1
(CR820994) GR0AAA50AE11RM1 INRA BAC Bos taurus genomic clone...    50   0.20   1
(AC097758) Rattus norvegicus clone CH230-77D2, *** SEQUENCIN...    38   0.43   2
(GH636062) EG-S31_002_F06 suspSSHS3, proliferation library (...    42   0.44   2
(AC144644) Medicago truncatula clone mth2-14l3, complete seq...    44   0.45   3
(AE013218) Buchnera aphidicola str. Sg (Schizaphis graminum)...    34   0.52   14
(CZ540826) SRAA-aad34d07.b1 Strongyloides ratti whole genome...    36   0.58   3
(EF107106) Uncultured marine bacterium HF130_81H07 genomic s...    34   0.59   5
(AL034559) Plasmodium falciparum MAL3P7.                           32   0.60   8
(CT817542) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    48   0.62   5
(DY366485) ZO__Ee0006D13.f ZO__Ee Zingiber officinale cDNA c...    36   0.63   2
(CT757472) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    48   0.79   1
(AC210258) Zea mays chromosome 10 clone CH201-69B18; ZMMBBc0...    48   0.79   1
(AC208101) Canis lupus familiaris clone XX-435E7, *** SEQUEN...    48   0.79   1
(AC200863) Zea mays chromosome 10 clone CH201-547E16; ZMMBBc...    48   0.79   1
(AC196193) Zea mays chromosome 10 clone ZMMBBb-379F17; ZMMBB...    48   0.79   1
(FH459313) CHO_OF4930xa19f1.ab1 CHO_OF4 Nicotiana tabacum ge...    48   0.79   1
(FH094589) CHO_OF3004xn17f1.ab1 CHO_OF3 Nicotiana tabacum ge...    48   0.79   1
(EJ205713) 1092344344344 Global-Ocean-Sampling_GS-27-01-01-1...    48   0.79   1
(CL403857) ZMMBBb0417H18r ZMMBBb (HindIII) Zea mays subsp. m...    48   0.79   1
(ES397347) MUT02-B10.y1d-s SHGC-MUT Mytilus californianus cD...    48   0.79   1
(DN313915) PL06016B2G03 cDNA from juvenile hermaphodites Sch...    48   0.79   1
(DN292918) PL030012A20B10 cDNA from sexually mature hermapho...    48   0.79   1
(CT767486) Paramecium tetraurelia 5-PRIME EST from clone LK0...    48   0.79   1
(EX162471) MW_DP0457 Dermatophagoides pteronyssinus cDNA lib...    48   0.79   1
(AC158498) Medicago truncatula chromosome 2 BAC clone mth2-6...    44   0.87   4
(AL844509) Plasmodium falciparum chromosome 13.                    34   0.88   15
(AE014838) Plasmodium falciparum 3D7 chromosome 11 section 3...    34   0.88   9
(AE014845) Plasmodium falciparum 3D7 chromosome 12, section ...    34   1.2    10
(AY653733) Acanthamoeba polyphaga mimivirus, complete genome.      32   1.5    19
(AC198000) Spermophilus tridecemlineatus clone VMRC20-573A12...    46   1.5    6
(AC116924) Dictyostelium discoideum chromosome 2 map 6357117...    36   1.5    8
(AP007780) Lotus japonicus genomic DNA, chromosome 3, clone:...    40   1.8    2
(AM427031) Vitis vinifera contig VV78X185549.22, whole genom...    38   2.1    3
(DU176024) 1098553249257 CHORI-243 Ovis aries genomic clone ...    34   2.1    2
(CL918922) OA_ABa0022L01.f OA_ABa Oryza australiensis genomi...    36   2.1    2
(ED848557) OA_CBa0016J24.f OA_CBa Oryza australiensis genomi...    36   2.1    2
(CR919796) Sus scrofa BES.                                         38   2.2    2
(AX652317) Sequence 2187 from Patent WO03000898.                   36   2.5    3
(AX509000) Sequence 3695 from Patent WO0216655.                    36   2.5    3
(CR385065) Zebrafish DNA sequence from clone CH211-232F6 in ...    46   3.1    1
(BX119907) Zebrafish DNA sequence from clone CH211-208D14 in...    46   3.1    1
(CU207209) Medicago truncatula chromosome 5 clone mte1-84c7,...    46   3.1    1
(AM488868) Vitis vinifera contig VV78X231760.5, whole genome...    46   3.1    1
(AM446272) Vitis vinifera contig VV78X037617.11, whole genom...    46   3.1    1
(AL138771) Human DNA sequence from clone RP4-542G16 on chrom...    46   3.1    1
(AC141221) Rattus norvegicus clone CH230-12D4, WORKING DRAFT...    46   3.1    1
(AC139640) Rattus norvegicus clone CH230-190N14, WORKING DRA...    46   3.1    1
(AC118521) Rattus norvegicus clone CH230-351P20, *** SEQUENC...    46   3.1    1
(CU693434) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    46   3.1    1
(AC073378) Homo sapiens clone RP11-440L22, WORKING DRAFT SEQ...    46   3.1    1
(AY967555) Schmidtea mediterranea clone NBE.1.11B mRNA seque...    46   3.1    1
(ET096654) QM0AAA24BH10FM1 CCL1 Citrus clementina genomic cl...    46   3.1    1
(EK399097) 1095469533500 Global-Ocean-Sampling_GS-31-01-01-1...    46   3.1    1
(EK239925) 1095460217992 Global-Ocean-Sampling_GS-31-01-01-1...    46   3.1    1
(EK020489) 1092955315479 Global-Ocean-Sampling_GS-31-01-01-1...    46   3.1    1
(CZ648514) OM__Ba0196I09.r OM__Ba Oryza minuta genomic clone...    46   3.1    1
(CU002176) Equus caballus GSS, BAC clone CH241-63A14, T7 end...    46   3.1    1
(CR970947) mth4-18L1FM1 BAC end, cultivar Jemalong A17 of Me...    46   3.1    1
(CR963702) mth4-11D21FM1 BAC end, cultivar Jemalong A17 of M...    46   3.1    1
(CG947492) MBEDG58TFC mth2 Medicago truncatula genomic clone...    46   3.1    1
(BI502438) kt49h02.y4 Strongyloides ratti L1 pAMP1 v3 Chiape...    46   3.1    1
(BB981022) Plasmodium berghei str. ANKA cDNA clone: OK011240...    46   3.1    1
(FC815784) Sr_pAMT7_04c10_T7 S. ratti mixed stage pAMP Stron...    46   3.1    1
(EV479368) Fc_nor_58C07_M13F Folsomia candida normalized cDN...    46   3.1    1
(CP001016) Beijerinckia indica subsp. indica ATCC 9039, comp...    46   3.1    1
(CP000095) Prochlorococcus marinus str. NATL2A, complete gen...    46   3.1    1
(ER599256) 1093016235854 Global-Ocean-Sampling_GS-36-01-01-2...    36   3.2    2
(CW029681) 104_257_10499813_114_30401 Sorghum methylation fi...    44   3.3    2
(EH043535) AS1RN35P1G02.ab1 Healthy Roots (RN) Arachis steno...    42   3.4    2
(EJ542124) 1092955392044 Global-Ocean-Sampling_GS-29-01-01-1...    44   3.4    2
(ER359326) 1092385400502 Global-Ocean-Sampling_GS-34-01-01-1...    36   3.5    2
(EK301349) 1095462365726 Global-Ocean-Sampling_GS-31-01-01-1...    38   3.7    2
(AC215625) Populus trichocarpa clone POP011-A24, complete se...    40   3.8    6
(AC158737) Medicago truncatula clone mth2-154f20, complete s...    44   4.0    6
(DX531951) GH_MBb0042I24r GH_MBb Gossypium hirsutum genomic ...    36   4.7    2
(AC177189) Strongylocentrotus purpuratus clone R3-4018H23, W...    40   4.9    6
(AX344564) Sequence 15 from Patent WO0200932.                      34   5.3    14
(AP000460) Homo sapiens genomic DNA, chromosome 21q21.2, clo...    38   5.5    5
(AC212608) Solanum lycopersicum chromosome 7 clone C07HBa002...    34   5.6    6
(BH665793) BOHWT62TR BO_2_3_KB Brassica oleracea genomic clo...    34   5.8    2
(AC096774) Homo sapiens BAC clone RP11-286D5 from 4, complet...    32   5.8    2
(AC012657) Homo sapiens chromosome 8 clone RP11-353O9 map 8,...    44   5.8    5
(AC226273) Macaca mulatta clone CH250-528N4, WORKING DRAFT S...    34   6.0    2
(GC700962) Sequence 16207 from patent US 6812339.                  32   6.0    2
(GC696591) Sequence 11835 from patent US 6812339.                  32   6.0    2
(AC151619) Medicago truncatula clone mth2-35n12, complete se...    44   6.1    4
(AL591592) Human DNA sequence from clone RP4-612P1 on chromo...    32   6.3    2
(CU682350) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    34   6.6    6
(AC231673) Solanum tuberosum chromosome 11 clone RH193D01, c...    42   6.9    5
(AE014848) Plasmodium falciparum 3D7 chromosome 12, section ...    40   7.0    9
(AC124235) Mus musculus chromosome 13, clone RP23-273G24, co...    38   7.6    6
(BX682232) Mouse DNA sequence *** SEQUENCING CANCELLED *** f...    44   7.7    2
(DY967947) CLSM19035.b1_E08.ab1 CLS(LMS) lettuce sativa Lact...    34   7.8    2
(DY978164) CLSS11916.b1_G03.ab1 CLS(LMS) lettuce sativa Lact...    34   7.8    2
(DW114416) CLRY2531.b1_E10.ab1 CLR(XYZ) lettuce serriola Lac...    34   7.8    2
(DY979790) CLSS1367.b1_M06.ab1 CLS(LMS) lettuce sativa Lactu...    34   7.8    2
(DW135699) CLSY3237.b1_J17.ab1 CLS(XYZ) lettuce sativa Lactu...    34   7.8    2
(DY980333) CLSS2307.b1_E01.ab1 CLS(LMS) lettuce sativa Lactu...    34   7.9    2
(EY048179) CATB950.rev CATB Artemisia annua, Tanzanian, from...    32   7.9    2
(BQ875674) QGI8M11.yg.ab1 QG_ABCDI lettuce salinas Lactuca s...    34   7.9    2
(DX429433) BE1085_P23_F IASMA L1 HindIII BAC library Vitis v...    34   7.9    2
(BQ993784) QGF5H10.yg.ab1 QG_EFGHJ lettuce serriola Lactuca ...    34   7.9    2
(GC844571) Sequence 159816 from patent US 6812339.                 32   7.9    2
(CT277519) Sus scrofa genomic clone PigE-78K16, genomic surv...    38   8.2    2
(AC005505) Plasmodium falciparum chromosome 12 clone PFYAC18...    32   8.4    12
(AC097797) Rattus norvegicus clone CH230-44P21, *** SEQUENCI...    38   8.5    8
(BH457580) BOHMM14TR BOHM Brassica oleracea genomic clone BO...    34   8.6    2
(FC799641) CBGC3085.rev CBGC Lottia gigantea 15h 18h embryos...    36   10.0   2

>(BJ402089) Dictyostelium discoideum cDNA clone:dds20o11, 3' end,
            single read.
          Length = 611

 Score = 1098 bits (554), Expect = 0.0
 Identities = 562/566 (99%)
 Strand = Plus / Minus


Query: 478  tttcatttaactggtttcattcatgatcttggtaaagttttattatctaaaaaatttaaa 537
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611  tttcatttaactggtttcattcatgatcttggtaaagttttattatctaaaaaatttaaa 552


Query: 538  gaacaaccacaatgggcaactgttggtgacacttttccattaggttgtaaatttgatgaa 597
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551  gaacaaccacaatgggcaactgttggtgacacttttccattaggttgtaaatttgatgaa 492


Query: 598  agtaatattttttatgaattttttaaaatgaatccagattataatgatagcaaatataat 657
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491  agtaatattttttatgaattttttaaaatgaatccagattataatgatagcaaatataat 432


Query: 658  agtgaatgtggtatatataaaaagaatattggattggaaaatgttacaatgagttgggga 717
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431  agtgaatgtggtatatataaaaagaatattggattggaaaatgttacaatgagttgggga 372


Query: 718  catgatgaatacttttatttggtttgtgttggaaataaatgtttattacctaaagaatcg 777
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371  catgatgaatacttttatttggtttgtgttggaaataaatgtttattacctaaagaatcg 312


Query: 778  ctttatatgattagattccattctttttatccatggcatagacataataaatatactcat 837
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311  ctttatatgattagattccattctttttatccatggcatagacataataaatatactcat 252


Query: 838  ttaacaaatgaagaagatgaaaaaatgctaaattgggtaaaggaatttaataaatttgat 897
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251  ttaacaaatgaagaagatgaaaaaatgctaaattgggtaaaggaatttaataaatttgat 192


Query: 898  ttatattcaaaagacagtgagccagtggatgttgaatctttaaaaccatattatcaatct 957
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 191  ttatattcaaaagacagtgagccagtggatgttgaatctttaaaaccatattatcaatct 132


Query: 958  ttaatttcaaaatatttcccaaacgaacttcattggtgattaaaattttcactctcccca 1017
            |||||||||||||||||||||||||||||||||||| ||||||||||||| | |||||||
Sbjct: 131  ttaatttcaaaatatttcccaaacgaacttcattggngattaaaattttcncnctcccca 72


Query: 1018 attaatgcacaactttgtgtaaattc 1043
            ||||||||||||| ||||||||||||
Sbjct: 71   attaatgcacaacnttgtgtaaattc 46

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 102105510
Number of Hits to DB: 1,334,537,985
Number of extensions: 87266530
Number of successful extensions: 7629976
Number of sequences better than 10.0: 140
Length of query: 1196
Length of database: 101,790,757,118
Length adjustment: 24
Effective length of query: 1172
Effective length of database: 99,340,224,878
Effective search space: 116426743557016
Effective search space used: 116426743557016
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7.14
Homology vs Protein 
Query= Contig-U01015-1 (Contig-U01015-1Q) /CSM_Contig/Contig-U01015-1Q.Seq.d
         (1196 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54GH4) RecName: Full=Inositol oxygenase;          EC=1.13.99.1...   379   e-103
AF049069_1(AF049069|pid:none) Pinus radiata PRE87 mRNA, complete...   237   5e-61
BT033948_1(BT033948|pid:none) Zea mays full-length cDNA clone ZM...   235   2e-60
EU961889_1(EU961889|pid:none) Zea mays clone 238907 unknown mRNA.     232   2e-59
(Q9FJU4) RecName: Full=Inositol oxygenase 5;          EC=1.13.99...   228   4e-58
GQ150167_1(GQ150167|pid:none) Solanum lycopersicum myo-inositol ...   225   2e-57
AK118307_1(AK118307|pid:none) Arabidopsis thaliana At1g14520 mRN...   224   6e-57
AM429949_2(AM429949|pid:none) Vitis vinifera contig VV78X048137....   223   1e-56
BT051610_1(BT051610|pid:none) Medicago truncatula clone MTYF5_F6...   222   2e-56
AC144766_18(AC144766|pid:none) Medicago truncatula clone mth2-17...   222   2e-56
AL049171_7(AL049171|pid:none) Arabidopsis thaliana DNA chromosom...   219   2e-55
AY086497_1(AY086497|pid:none) Arabidopsis thaliana clone 254633 ...   218   4e-55
(O82200) RecName: Full=Inositol oxygenase 2;          EC=1.13.99...   218   4e-55
AY232552_1(AY232552|pid:none) Arabidopsis thaliana myo-inositol ...   217   6e-55
BC077443_1(BC077443|pid:none) Xenopus laevis MGC82300 protein, m...   216   1e-54
BC087797_1(BC087797|pid:none) Xenopus tropicalis myo-inositol ox...   214   4e-54
BC082405_1(BC082405|pid:none) Xenopus laevis MGC82014 protein, m...   214   6e-54
AC012188_30(AC012188|pid:none) Sequence of BAC F14L17 from Arabi...   210   9e-53
DQ443335_1(DQ443335|pid:none) Bombyx mori myo-inositol oxygenase...   209   1e-52
BT082516_1(BT082516|pid:none) Anoplopoma fimbria clone afim-evh-...   207   5e-52
AE017346_389(AE017346|pid:none) Cryptococcus neoformans var. neo...   206   2e-51
EF677641_1(EF677641|pid:none) Picea sitchensis clone WS02772_E09...   205   3e-51
(A7MBE4) RecName: Full=Inositol oxygenase;          EC=1.13.99.1...   202   1e-50
AF197127_1(AF197127|pid:none) Mus musculus unknown mRNA.              202   2e-50
CP000685_3098(CP000685|pid:none) Flavobacterium johnsoniae UW101...   202   2e-50
AY738259_1(AY738259|pid:none) Rattus norvegicus myo-inositol oxy...   199   1e-49
AF197128_1(AF197128|pid:none) Rattus norvegicus unknown mRNA.         199   1e-49
(Q9QXN4) RecName: Full=Inositol oxygenase;          EC=1.13.99.1...   199   2e-49
AF197129_1(AF197129|pid:none) Homo sapiens unknown mRNA.              198   3e-49
(Q9UGB7) RecName: Full=Inositol oxygenase;          EC=1.13.99.1...   197   5e-49
(Q5REY9) RecName: Full=Inositol oxygenase;          EC=1.13.99.1...   197   5e-49
AC010657_2(AC010657|pid:none) Genomic sequence for Arabidopsis t...   194   4e-48
FM992692_378(FM992692|pid:none) Candida dubliniensis CD36 chromo...   189   1e-46
FN392320_52(FN392320|pid:none) Pichia pastoris GS115 chromosome ...   189   2e-46
CU928179_395(CU928179|pid:none) Zygosaccharomyces rouxii strain ...   187   6e-46
CR382137_952(CR382137|pid:none) Debaryomyces hansenii strain CBS...   185   2e-45
CR382137_1049(CR382137|pid:none) Debaryomyces hansenii chromosom...   184   7e-45
AE016819_715(AE016819|pid:none) Ashbya gossypii (= Eremothecium ...   183   1e-44
CU928169_301(CU928169|pid:none) Kluyveromyces thermotolerans str...   182   2e-44
AE017348_73(AE017348|pid:none) Cryptococcus neoformans var. neof...   181   6e-44
AE014296_2236(AE014296|pid:none) Drosophila melanogaster chromos...   181   6e-44
AM270369_20(AM270369|pid:none) Aspergillus niger contig An16c017...   176   1e-42
CU633446_62(CU633446|pid:none) Podospora anserina genomic DNA ch...   175   2e-42
AP007171_523(AP007171|pid:none) Aspergillus oryzae RIB40 genomic...   174   6e-42
AM920437_2033(AM920437|pid:none) Penicillium chrysogenum Wiscons...   169   2e-40
AL096767_13(AL096767|pid:none) Human DNA sequence from clone RP4...   166   2e-39
AM270095_7(AM270095|pid:none) Aspergillus niger contig An04c0350...   158   3e-37
AL096767_12(AL096767|pid:none) Human DNA sequence from clone RP4...   147   6e-34
DQ843604_1(DQ843604|pid:none) Vitis vinifera myo-inositol oxidas...   106   2e-21
AM424402_3(AM424402|pid:none) Vitis vinifera contig VV78X079762....   103   1e-20
E88642(E88642)protein C54E4.5 [imported] - Caenorhabditis elegans      80   2e-13
AF038609_3(AF038609|pid:none) Caenorhabditis elegans cosmid C54E...    80   2e-13
AY232034_1(AY232034|pid:none) Drosophila yakuba clone yak-ad_CG6...    57   1e-06
DQ889587_1(DQ889587|pid:none) Arachis hypogaea clone B5 myo-inis...    57   2e-06
AL096767_11(AL096767|pid:none) Human DNA sequence from clone RP4...    45   0.004
AY735184_1(AY735184|pid:none) Fundulus heteroclitus inositol oxy...    39   0.28
AJ249470_1(AJ249470|pid:none) Spodoptera litura mRNA for methion...    35   5.3
CU633749_1635(CU633749|pid:none) Cupriavidus taiwanensis str. LM...    35   5.3

>(Q54GH4) RecName: Full=Inositol oxygenase;          EC=1.13.99.1;
           AltName: Full=Myo-inositol oxygenase;          Short=MI
           oxygenase;
          Length = 292

 Score =  379 bits (973), Expect = e-103
 Identities = 172/172 (100%), Positives = 172/172 (100%)
 Frame = +1

Query: 478 FHLTGFIHDLGKVLLSKKFKEQPQWATVGDTFPLGCKFDESNIFYEFFKMNPDYNDSKYN 657
           FHLTGFIHDLGKVLLSKKFKEQPQWATVGDTFPLGCKFDESNIFYEFFKMNPDYNDSKYN
Sbjct: 121 FHLTGFIHDLGKVLLSKKFKEQPQWATVGDTFPLGCKFDESNIFYEFFKMNPDYNDSKYN 180

Query: 658 SECGIYKKNIGLENVTMSWGHDEYFYLVCVGNKCLLPKESLYMIRFHSFYPWHRHNKYTH 837
           SECGIYKKNIGLENVTMSWGHDEYFYLVCVGNKCLLPKESLYMIRFHSFYPWHRHNKYTH
Sbjct: 181 SECGIYKKNIGLENVTMSWGHDEYFYLVCVGNKCLLPKESLYMIRFHSFYPWHRHNKYTH 240

Query: 838 LTNEEDEKMLNWVKEFNKFDLYSKDSEPVDVESLKPYYQSLISKYFPNELHW 993
           LTNEEDEKMLNWVKEFNKFDLYSKDSEPVDVESLKPYYQSLISKYFPNELHW
Sbjct: 241 LTNEEDEKMLNWVKEFNKFDLYSKDSEPVDVESLKPYYQSLISKYFPNELHW 292

 Score =  142 bits (358), Expect = 2e-32
 Identities = 74/98 (75%), Positives = 75/98 (76%)
 Frame = -2

Query: 295 IEXXXXXXXXEIKHDNSLKTGFEITKXXXXXXXXXXXEDRVSEAYRNSHTYQTYDYATEK 116
           IE        EIKHDNSLKTGFEITK           EDRVSEAYRNSHTYQTYDYATEK
Sbjct: 2   IETRTTTSTSEIKHDNSLKTGFEITKEVEEFRNYENSEDRVSEAYRNSHTYQTYDYATEK 61

Query: 115 XKQYSQLDXSXKMGLWEAAELLNTIIDEXDPNSNIPQI 2
            KQYSQLD S KMGLWEAAELLNTIIDE DP+SNIPQI
Sbjct: 62  KKQYSQLDTSIKMGLWEAAELLNTIIDESDPDSNIPQI 99

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 1,109,229,533
Number of extensions: 17652770
Number of successful extensions: 48570
Number of sequences better than 10.0: 58
Number of HSP's gapped: 48455
Number of HSP's successfully gapped: 106
Length of query: 398
Length of database: 1,051,180,864
Length adjustment: 131
Effective length of query: 267
Effective length of database: 627,191,635
Effective search space: 167460166545
Effective search space used: 167460166545
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
PSORT 

 psg: 0.34  gvh: 0.37  alm: 0.49  top: 0.53  tms: 0.00  mit: 0.33  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: nuclear
	 36.0 %: cytoplasmic
	  8.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: vesicles of secretory system

>> prediction for Contig-U01015-1 is nuc
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 1
SH (FL, L) 0
SF (FL, S) 2
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0