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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U04742-1
Contig ID Contig-U04742-1
Contig update 2001. 8.29
Contig sequence 
>Contig-U04742-1 (Contig-U04742-1Q) /CSM_Contig/Contig-U04742-1Q.Seq.d
ATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATTAATAATAATAAATAAA
TAATTTTGGTTGATGTGATTCAAGGTCTCCTTCAAAATGATAATAGTACC
AATTTTAGTGATCAAGATAAACATTATAGTTCAAATATAAATGAAGAATA
TTATTATTATGATGAAAATACACCACTAAAACAAGATGGCTTTTGGGGTA
AACCAAAAGTTAAAGTTTTTGTTTATCATTTTTTATTCGTTTTCTTATCA
ATAGTTTATTTATCTATATCAGTAGGTTTACCATACTTAAACAAAGCAAT
TTTAAGTTCAGAGTATCAATTTCCACTTACATCAAGTTTATTTCAAACAA
TGGGTGCAATAGTTATATTATTAATTTTTAATTTAGCTCAATATCGTTAT
CAAAGTGGTGATTTGGTTCAAAAGAGTTATTTCTTTGATAAGAATTTTAT
TAAAAAAAGTTATATTATGATACCAGTTTCAATTTGTTTTGCAGCTGTTA
TGATATTGACAAATGTTGGTATTCAAAAAATTCCAGTTGATTACCATGTT
GTTTTTAAATCAACAAATATTATATGGGTG
Gap no gap
Contig length 580
Chromosome number (1..6, M) 1
Chromosome length 4919822
Start point 1958152
End point 1958732
Strand (PLUS/MINUS) PLUS
Number of clones 2
Number of EST 2
Link to clone list U04742
List of clone(s) 

est1=SSC603F,1,581
est2=SSM609E,59,581
Translated Amino Acid sequence 
*kkkkkkkkkinnnk*IILVDVIQGLLQNDNSTNFSDQDKHYSSNINEEYYYYDENTPLK
QDGFWGKPKVKVFVYHFLFVFLSIVYLSISVGLPYLNKAILSSEYQFPLTSSLFQTMGAI
VILLIFNLAQYRYQSGDLVQKSYFFDKNFIKKSYIMIPVSICFAAVMILTNVGIQKIPVD
YHVVFKSTNIIWV
Translated Amino Acid sequence (All Frames) 
Frame A:
ikkkkkkkkkn****innfg*cdsrspsk***yqf**sr*tl*fkyk*rilll**kyttk
trwllg*tks*sfclsffirflinslfiyisrftilkqsnfkfrvsistyikfisnngcn
syiinf*fssislskw*fgskelfl**efy*kklyydtsfnlfcscydidkcwysknss*
lpccf*inkyymg


Frame B:
*kkkkkkkkkinnnk*IILVDVIQGLLQNDNSTNFSDQDKHYSSNINEEYYYYDENTPLK
QDGFWGKPKVKVFVYHFLFVFLSIVYLSISVGLPYLNKAILSSEYQFPLTSSLFQTMGAI
VILLIFNLAQYRYQSGDLVQKSYFFDKNFIKKSYIMIPVSICFAAVMILTNVGIQKIPVD
YHVVFKSTNIIWV


Frame C:
kkkkkkkkkkliiink*fwlm*fkvsfkmiivpilvikiniivqi*mkniiimmkihh*n
kmafgvnqklkflfiifysfsyq*fiylyq*vyht*tkqf*vqsinfhlhqvyfkqwvq*
lyy*fli*lnivikvviwfkrvislirillkkvil*yqfqfvlqll*y*qmlvfkkfqli
tmlflnqqilyg
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U04742-1 (Contig-U04742-1Q)
/CSM_Contig/Contig-U04742-1Q.Seq.d
         (580 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U04742-1 (Contig-U04742-1Q) /CSM_Contig/Conti...   587  e-168
Contig-U10294-1 (Contig-U10294-1Q) /CSM_Contig/Conti...    50  3e-06
Contig-U03273-1 (Contig-U03273-1Q) /CSM_Contig/Conti...    42  7e-04
Contig-U11440-1 (Contig-U11440-1Q) /CSM_Contig/Conti...    40  0.003
Contig-U09780-1 (Contig-U09780-1Q) /CSM_Contig/Conti...    38  0.010
Contig-U05876-1 (Contig-U05876-1Q) /CSM_Contig/Conti...    38  0.010
Contig-U09496-1 (Contig-U09496-1Q) /CSM_Contig/Conti...    36  0.040
Contig-U03776-1 (Contig-U03776-1Q) /CSM_Contig/Conti...    36  0.040
Contig-U14087-1 (Contig-U14087-1Q) /CSM_Contig/Conti...    34  0.16
Contig-U13758-1 (Contig-U13758-1Q) /CSM_Contig/Conti...    34  0.16

>Contig-U04742-1 (Contig-U04742-1Q) /CSM_Contig/Contig-U04742-1Q.Seq.d
          Length = 580

 Score =  587 bits (296), Expect = e-168
 Identities = 310/317 (97%)
 Strand = Plus / Plus

                                                                       
Query: 264 ctatatcagtaggtttaccatacttaaacaaagcaattttaagttcagagtatcaatttc 323
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ctatatcagtaggtttaccatacttaaacaaagcaattttaagttcagagtatcaatttc 323

                                                                       
Query: 324 cacttacatcaagtttatttcaaacaatgggtgcaatagttatattattaatttttaatt 383
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 cacttacatcaagtttatttcaaacaatgggtgcaatagttatattattaatttttaatt 383

                                                                       
Query: 384 tagctcaatatcgttatcaaagtggtgatttggttcaaaagagttatttctttgataaga 443
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tagctcaatatcgttatcaaagtggtgatttggttcaaaagagttatttctttgataaga 443

                                                                       
Query: 444 attttattnnnnnnngttatattatgataccagtttcaatttgttttgcagctgttatga 503
           ||||||||       |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 attttattaaaaaaagttatattatgataccagtttcaatttgttttgcagctgttatga 503

                                                                       
Query: 504 tattgacaaatgttggtattcaaaaaattccagttgattaccatgttgtttttaaatcaa 563
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tattgacaaatgttggtattcaaaaaattccagttgattaccatgttgtttttaaatcaa 563

                            
Query: 564 caaatattatatgggtg 580
           |||||||||||||||||
Sbjct: 564 caaatattatatgggtg 580


 Score =  315 bits (159), Expect = 3e-86
 Identities = 159/159 (100%)
 Strand = Plus / Plus

                                                                       
Query: 55  tttggttgatgtgattcaaggtctccttcaaaatgataatagtaccaattttagtgatca 114
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55  tttggttgatgtgattcaaggtctccttcaaaatgataatagtaccaattttagtgatca 114

                                                                       
Query: 115 agataaacattatagttcaaatataaatgaagaatattattattatgatgaaaatacacc 174
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 115 agataaacattatagttcaaatataaatgaagaatattattattatgatgaaaatacacc 174

                                                  
Query: 175 actaaaacaagatggcttttggggtaaaccaaaagttaa 213
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 175 actaaaacaagatggcttttggggtaaaccaaaagttaa 213


 Score = 28.2 bits (14), Expect = 9.9
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                         
Query: 366 tattattaattttt 379
           ||||||||||||||
Sbjct: 41  tattattaattttt 28


>Contig-U10294-1 (Contig-U10294-1Q) /CSM_Contig/Contig-U10294-1Q.Seq.d
          Length = 720

 Score = 50.1 bits (25), Expect = 3e-06
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                       
Query: 553 ttttaaatcaacaaatattatatgggtg 580
           |||||||||| |||||||||||||||||
Sbjct: 1   ttttaaatcancaaatattatatgggtg 28


>Contig-U03273-1 (Contig-U03273-1Q) /CSM_Contig/Contig-U03273-1Q.Seq.d
          Length = 573

 Score = 42.1 bits (21), Expect = 7e-04
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 141 atgaagaatattattattatgatga 165
           ||||||||||||||||| |||||||
Sbjct: 87  atgaagaatattattatgatgatga 111


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 20,078
Number of Sequences: 6905
Number of extensions: 20078
Number of successful extensions: 1690
Number of sequences better than 10.0: 588
length of query: 580
length of database: 5,674,871
effective HSP length: 16
effective length of query: 564
effective length of database: 5,564,391
effective search space: 3138316524
effective search space used: 3138316524
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)
dna update 2009. 6.29
Homology vs DNA 
Query= Contig-U04742-1 (Contig-U04742-1Q) /CSM_Contig/Contig-U04742-1Q.Seq.d
         (580 letters)

Database: ddbj_A
           102,105,510 sequences; 101,790,757,118 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU071830) Dictyostelium discoideum slug cDNA, clone SSC603.      317   3e-82  1
(AU074967) Dictyostelium discoideum slug cDNA, clone SSM609.      287   7e-77  2
(C93310) Dictyostelium discoideum slug cDNA, clone SSM609.        125   2e-24  1
(AB211538) Hemicentrotus pulcherrimus mRNA for delta protein...    54   0.006  1
(AC131451) Strongylocentrotus purpuratus clone Sp46A16, *** ...    54   0.006  1
(AC201216) Strongylocentrotus purpuratus clone R3-15E5, WORK...    54   0.006  1
(AC177973) Strongylocentrotus purpuratus clone R3-3050A3, WO...    54   0.006  1
(AC175876) Strongylocentrotus purpuratus clone R3-15E06, WOR...    54   0.006  1
(DN786044) 90189103 Sea Urchin primary mesenchyme cell cDNA ...    54   0.006  1
(DN580252) 93815102 Sea Urchin primary mesenchyme cell cDNA ...    54   0.006  1
(BJ433532) Dictyostelium discoideum cDNA clone:ddv22m05, 3' ...    50   0.095  1
(AM476997) Vitis vinifera, whole genome shotgun sequence, co...    40   0.26   2
(CP000084) Candidatus Pelagibacter ubique HTCC1062, complete...    36   0.58   12
(AC021177) Homo sapiens chromosome 9 clone RP11-698K16, WORK...    46   0.62   4
(CU151845) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    40   0.64   4
(Z69792) Caenorhabditis elegans Cosmid F40E10.                     42   0.70   3
(EH573365) FDR202-P00044-DEPE-R_P21 FDR202 Danio rerio cDNA ...    32   0.87   3
(AM440559) Vitis vinifera contig VV78X178245.2, whole genome...    40   1.0    2
(AC006278) Plasmodium falciparum chromosome 12 clone PFYAC34...    40   1.2    4
(BZ604687) WHADE80TF Human MCF7 breast cancer cell line libr...    38   1.2    3
(AC220699) Bos taurus clone CH240-349F6, WORKING DRAFT SEQUE...    38   1.2    3
(AL807377) Zebrafish DNA sequence from clone CH211-229G3.          46   1.5    1
(EU978890) Culicoides nubeculosus clone CNSG23 putative sali...    46   1.5    1
(DQ536193) Paracentrotus lividus Delta mRNA, complete cds.         46   1.5    1
(AY553901) Arhopala kinabala 16S large subunit ribosomal RNA...    46   1.5    1
(AY553900) Arhopala antimuta 16S large subunit ribosomal RNA...    46   1.5    1
(AY553892) Arhopala democritus 16S large subunit ribosomal R...    46   1.5    1
(AY553886) Arhopala centaurus 16S large subunit ribosomal RN...    46   1.5    1
(AY553885) Arhopala pseudocentaurus 16S large subunit riboso...    46   1.5    1
(AY553884) Arhopala madytus 16S large subunit ribosomal RNA ...    46   1.5    1
(AY553880) Arhopala amphimuta 16S large subunit ribosomal RN...    46   1.5    1
(AY553879) Arhopala major 16S large subunit ribosomal RNA ge...    46   1.5    1
(AY074791) Lytechinus variegatus delta protein (Delta) mRNA,...    46   1.5    1
(AL513124) Human DNA sequence from clone RP11-401G5 on chrom...    46   1.5    1
(AC097378) Homo sapiens BAC clone RP11-123G5 from 4, complet...    46   1.5    1
(AC146987) Lytechinus variegatus clone BLV-129M22, *** SEQUE...    46   1.5    1
(AC131564) Lytechinus variegatus clone Lv71J9, *** SEQUENCIN...    46   1.5    1
(CT797467) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    46   1.5    1
(ER354710) 1092351028741 Global-Ocean-Sampling_GS-34-01-01-1...    46   1.5    1
(EJ803663) 1093017444970 Global-Ocean-Sampling_GS-30-02-01-1...    46   1.5    1
(EJ791348) 1093017379289 Global-Ocean-Sampling_GS-30-02-01-1...    46   1.5    1
(DY330421) OB_MEa0005I08.r OB_MEa Ocimum basilicum cDNA clon...    46   1.5    1
(EF556372) Gazania jurineifolia subsp. jurineifolia voucher ...    36   1.7    2
(BQ597269) PfESToab37a10.y1 Plasmodium falciparum 3D7 asexua...    36   1.9    2
(AC117176) Dictyostelium discoideum chromosome 2 map 5018074...    36   2.0    6
(BU496827) PfESToab59d07.y1 Plasmodium falciparum 3D7 asexua...    36   2.1    2
(AM479925) Vitis vinifera contig VV78X277253.1, whole genome...    38   2.4    2
(CU914808) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   2.4    4
(EG367892) USDA-FP_168525 Homalodisca vitripennis (syn. H. c...    34   2.9    3
(AZ533496) ENTBR32TR Entamoeba histolytica Sheared DNA Entam...    38   3.0    2
(FB571370) Sequence 237 from Patent EP1865317.                     38   3.1    4
(FB571314) Sequence 181 from Patent EP1865317.                     38   3.1    4
(AZ679202) ENTGU74TF Entamoeba histolytica Sheared DNA Entam...    38   3.2    2
(AE014842) Plasmodium falciparum 3D7 chromosome 11 section 7...    34   3.2    7
(BH150159) ENTPO10TF Entamoeba histolytica Sheared DNA Entam...    38   3.2    2
(AF488831) Lactobacillus salivarius UCC118 plasmid pSF118-20...    42   3.8    2
(EL895503) CGF2002907_H06 WLO-02:  Walnut leaf Juglans hinds...    34   3.9    2
(CT027755) Zebrafish DNA sequence from clone DKEY-234C9 in l...    30   4.4    6
(AC214548) MACACA MULATTA BAC clone CH250-397G21 from chromo...    42   4.6    4
(CU914424) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   4.7    3
(AC225940) Zea mays chromosome 4 clone ZMMBBb-106M8; ZMMBBb0...    40   4.7    3
(CV583679) L_AI-aaa15f05.b1 Hc7B_Y Ajellomyces capsulatus cD...    38   4.7    2
(AC116984) Dictyostelium discoideum chromosome 2 map 2567470...    32   4.9    12
(AC194364) Gossypium hirsutum chromosome UNKNOWN clone ZMMBB...    38   5.1    4
(CV590787) L_AI-aaa32b10.b1 Hc7B_Y Ajellomyces capsulatus cD...    38   5.7    2
(CR387927) Zebrafish DNA sequence from clone CH211-260P11 in...    44   5.9    1
(BX072538) Zebrafish DNA sequence from clone DKEY-217K21 in ...    44   5.9    1
(BV370183) S231P6262FH4.T0 BedlingtonTerrier Canis familiari...    44   5.9    1
(CU227767) Populus EST from severe drought-stressed leaves.        44   5.9    1
(AC137701) Medicago truncatula clone mth2-35h1, complete seq...    44   5.9    1
(AC135461) Medicago truncatula clone mth2-34f24, complete se...    44   5.9    1
(DD111110) GONOCOCCAL PROTEINS AND NUCLEIC ACIDS.                  44   5.9    1
(CS556645) Sequence 7157 from Patent EP1777233.                    44   5.9    1
(U87145) Toxoplasma gondii chloroplast, complete genome.           44   5.9    1
(AY553899) Arhopala aurea 16S large subunit ribosomal RNA ge...    44   5.9    1
(AY553898) Arhopala anthelus 16S large subunit ribosomal RNA...    44   5.9    1
(AY553891) Arhopala paraganesa 16S large subunit ribosomal R...    44   5.9    1
(AY553889) Arhopala epimuta 16S large subunit ribosomal RNA ...    44   5.9    1
(AY553887) Arhopala labuana 16S large subunit ribosomal RNA ...    44   5.9    1
(AY553882) Arhopala wildei 16S large subunit ribosomal RNA g...    44   5.9    1
(AK116378) Ciona intestinalis cDNA, clone:citb036o16, full i...    44   5.9    1
(AE014841) Plasmodium falciparum 3D7 chromosome 11 section 6...    44   5.9    1
(AC116979) Dictyostelium discoideum chromosome 2 map 6445720...    44   5.9    1
(CU633280) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   5.9    1
(CU468414) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   5.9    1
(AC225312) Zea mays chromosome 9 clone CH201-283I12; ZMMBBc0...    44   5.9    1
(AC207317) Zea mays chromosome 9 clone CH201-340N6; ZMMBBc03...    44   5.9    1
(AC184575) Strongylocentrotus purpuratus clone R3-3059I11, W...    44   5.9    1
(AC179659) Strongylocentrotus purpuratus clone R3-1024F02, W...    44   5.9    1
(AC178764) Strongylocentrotus purpuratus clone R3-3001P07, W...    44   5.9    1
(AC177052) Strongylocentrotus purpuratus clone R3-4004B23, W...    44   5.9    1
(AC174105) Strongylocentrotus purpuratus clone R3-1020C5, WO...    44   5.9    1
(AZ524953) 238PbD07 Pb MBN #21 Plasmodium berghei genomic 3'...    44   5.9    1
(AZ524952) 238PbD06 Pb MBN #21 Plasmodium berghei genomic 3'...    44   5.9    1
(AZ522215) 204PbA02 Pb MBN #21 Plasmodium berghei genomic 3'...    44   5.9    1
(EJ881052) 1093018396674 Global-Ocean-Sampling_GS-30-02-01-1...    44   5.9    1
(EJ765041) 1092963193928 Global-Ocean-Sampling_GS-30-02-01-1...    44   5.9    1
(EJ757908) 1092963097323 Global-Ocean-Sampling_GS-30-02-01-1...    44   5.9    1
(EJ633901) 1092970302256 Global-Ocean-Sampling_GS-29-01-01-1...    44   5.9    1
(EJ607948) 1092962021931 Global-Ocean-Sampling_GS-29-01-01-1...    44   5.9    1
(EJ342061) 1092963521532 Global-Ocean-Sampling_GS-28-01-01-1...    44   5.9    1
(ED704395) GM_WBb0048I11.f GM_WBb Glycine max genomic clone ...    44   5.9    1
(ED520869) KBrB108C08F KBrB, Brassica rapa BamHI BAC library...    44   5.9    1
(ED520865) KBrB108C06F KBrB, Brassica rapa BamHI BAC library...    44   5.9    1
(DU894498) 405452 Tomato HindIII BAC Library Solanum lycoper...    44   5.9    1
(CZ388624) ZMMBF0165M06f ZMMBF Zea mays genomic clone ZMMBF0...    44   5.9    1
(CG944704) MBELF36TR mth2 Medicago truncatula genomic clone ...    44   5.9    1
(AG346310) Mus musculus molossinus DNA, clone:MSMg01-141G24....    44   5.9    1
(EC819327) SME00006459 esmbsro2 Sawyeria marylandensis cDNA,...    44   5.9    1
(CK734647) TgESTzyk77f06.y1 TgRH Tachyzoite FL cDNA Toxoplas...    44   5.9    1
(BW365323) Ciona intestinalis cDNA, clone:cima835f16, 5'end,...    44   5.9    1
(BW364228) Ciona intestinalis cDNA, clone:cima832d20, 5'end,...    44   5.9    1
(BW352555) Ciona intestinalis cDNA, clone:ciem851o18, 5'end,...    44   5.9    1
(BM167741) EST570264 PyBS Plasmodium yoelii yoelii cDNA clon...    44   5.9    1
(FK924116) EST_lsal_evj_940442 lsalevj mixed_tissue_mixed_st...    44   5.9    1
(FK196173) XABT208505.b1 Gateway compatible cien cDNA librar...    44   5.9    1
(FK188490) XABT203720.b1 Gateway compatible cien cDNA librar...    44   5.9    1
(FK124579) XABT164580.b1 Gateway compatible cien cDNA librar...    44   5.9    1
(FK093026) XABT144180.b1 Gateway compatible cien cDNA librar...    44   5.9    1
(FF984730) CBWU97777.b1 Yutaka Satou unpublished cDNA librar...    44   5.9    1
(FF937525) CBWU72788.b1 Yutaka Satou unpublished cDNA librar...    44   5.9    1
(FF925840) CBWU64791.b1 Yutaka Satou unpublished cDNA librar...    44   5.9    1
(FF751145) XABT59682.fwd Gateway compatible cien cDNA librar...    44   5.9    1
(FF745961) XABT56036.fwd Gateway compatible cien cDNA librar...    44   5.9    1
(FF731311) XABT45775.fwd Gateway compatible cien cDNA librar...    44   5.9    1
(FF714827) XABT34047.fwd Gateway compatible cien cDNA librar...    44   5.9    1
(EY344809) CAWZ13498.fwd CAWZ Helobdella robusta Primary Lat...    44   5.9    1
(AV994213) Ciona intestinalis cDNA, clone:citb36o16, 5' end,...    44   5.9    1
(AV983816) Ciona intestinalis cDNA, clone:cieg28e01, 5' end,...    44   5.9    1
(U65219) Neisseria gonorrhoeae strain FA1090 transferrin-bin...    44   5.9    1
(FM178379) Aliivibrio salmonicida LFI1238 chromosome 1 compl...    44   5.9    1
(CU469464) Candidatus Phytoplasma mali strain AT complete ch...    44   5.9    1
(AM849584) Neisseria gonorrhoeae partial tbpB gene for trans...    44   5.9    1
(AM849580) Neisseria gonorrhoeae partial tbpB gene for trans...    44   5.9    1
(AM849579) Neisseria gonorrhoeae partial tbpB gene for trans...    44   5.9    1
(AM849575) Neisseria gonorrhoeae partial tbpB gene for trans...    44   5.9    1
(AM849573) Neisseria gonorrhoeae partial tbpB gene for trans...    44   5.9    1
(AE004969) Neisseria gonorrhoeae FA 1090, complete genome.         44   5.9    1
(AF410153) Swinepox virus isolate 17077-99, complete genome.       36   6.3    5
(CP001056) Clostridium botulinum B str. Eklund 17B, complete...    34   6.5    14
(AC183102) Pan troglodytes BAC clone CH251-717M1 from chromo...    40   6.9    2
(AC005505) Plasmodium falciparum chromosome 12 clone PFYAC18...    36   7.1    8
(EJ051114) 1095454147723 Global-Ocean-Sampling_GS-26-01-01-1...    30   7.8    3
(CT737166) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    32   8.0    6
(CV583513) mdv96e09.g2 Hc7B_Y Ajellomyces capsulatus cDNA 5'...    38   8.2    2
(AC177358) Strongylocentrotus purpuratus clone R3-1032F3, WO...    40   8.4    6
(AE017332) Mycoplasma hyopneumoniae 232, complete genome.          36   8.4    11
(CV606356) L_AI-aaa13d09.g1 Hc7B_Y Ajellomyces capsulatus cD...    38   8.5    2
(AC116330) Dictyostelium discoideum chromosome 2 map 3191214...    38   8.8    4
(CV606238) L_AI-aaa13d09.b1 Hc7B_Y Ajellomyces capsulatus cD...    38   8.8    2
(AM446552) Vitis vinifera contig VV78X098223.18, whole genom...    42   9.0    2
(GE724298) CBUP8289.g1 B.anynana_wing.4-6d_2-10kb Bicyclus a...    40   9.1    2
(AE014825) Plasmodium falciparum 3D7 chromosome 14 section 1...    34   9.2    8
(EJ673440) 1092955067324 Global-Ocean-Sampling_GS-30-02-01-1...    34   9.6    2
(CU695008) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    30   9.9    2

>(AU071830) Dictyostelium discoideum slug cDNA, clone SSC603.
          Length = 240

 Score =  317 bits (160), Expect = 3e-82
 Identities = 160/160 (100%)
 Strand = Plus / Plus


Query: 55  tttggttgatgtgattcaaggtctccttcaaaatgataatagtaccaattttagtgatca 114
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55  tttggttgatgtgattcaaggtctccttcaaaatgataatagtaccaattttagtgatca 114


Query: 115 agataaacattatagttcaaatataaatgaagaatattattattatgatgaaaatacacc 174
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 115 agataaacattatagttcaaatataaatgaagaatattattattatgatgaaaatacacc 174


Query: 175 actaaaacaagatggcttttggggtaaaccaaaagttaaa 214
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 175 actaaaacaagatggcttttggggtaaaccaaaagttaaa 214

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 102105510
Number of Hits to DB: 704,786,798
Number of extensions: 48403559
Number of successful extensions: 3921466
Number of sequences better than 10.0: 157
Length of query: 580
Length of database: 101,790,757,118
Length adjustment: 23
Effective length of query: 557
Effective length of database: 99,442,330,388
Effective search space: 55389378026116
Effective search space used: 55389378026116
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7.31
Homology vs Protein 
Query= Contig-U04742-1 (Contig-U04742-1Q) /CSM_Contig/Contig-U04742-1Q.Seq.d
         (580 letters)

Database: nrp_A
           3,268,448 sequences; 1,061,185,681 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(A7S1L6) RecName: Full=GDP-fucose transporter 1; AltName: Full=S...    37   0.51
BC046896_1(BC046896|pid:none) Danio rerio solute carrier family ...    36   0.66
T20120(T20120)hypothetical protein C50F4.14 - Caenorhabditis ele...    36   0.87
(Q968A5) RecName: Full=GDP-fucose transporter;  &AF323969_1(AF32...    36   0.87
AF335993_2(AF335993|pid:none) Thrips imaginis mitochondrion, com...    35   1.1
CP001078_1248(CP001078|pid:none) Clostridium botulinum E3 str. A...    35   1.1
BC170897_1(BC170897|pid:none) Xenopus tropicalis solute carrier ...    35   1.9
CP000903_856(CP000903|pid:none) Bacillus weihenstephanensis KBAB...    35   1.9
BX950851_157(BX950851|pid:none) Erwinia carotovora subsp. atrose...    34   3.3
BT077986_1(BT077986|pid:none) Lepeophtheirus salmonis Pacific fo...    34   3.3
CP001348_2083(CP001348|pid:none) Clostridium cellulolyticum H10,...    34   3.3
FJ362381_2(FJ362381|pid:none) Caenorhabditis sp. PS1010 contig J...    34   3.3
AM910996_261(AM910996|pid:none) Plasmodium knowlesi strain H chr...    33   4.3
CP000885_2564(CP000885|pid:none) Clostridium phytofermentans ISD...    33   4.3
CP000975_2411(CP000975|pid:none) Methylacidiphilum infernorum V4...    33   5.6
CP000383_1711(CP000383|pid:none) Cytophaga hutchinsonii ATCC 334...    33   5.6
BC095107_1(BC095107|pid:none) Danio rerio zgc:109986, mRNA (cDNA...    33   5.6
CP001581_276(CP001581|pid:none) Clostridium botulinum A2 str. Ky...    33   7.3
U26175_1(U26175|pid:none) Leishmania donovani lipophosphoglycan ...    33   7.3
CP000728_274(CP000728|pid:none) Clostridium botulinum F str. Lan...    33   7.3
CP000962_274(CP000962|pid:none) Clostridium botulinum A3 str. Lo...    33   7.3
BA000045_753(BA000045|pid:none) Gloeobacter violaceus PCC 7421 D...    33   7.3
CP000939_299(CP000939|pid:none) Clostridium botulinum B1 str. Ok...    33   7.3
CP000726_266(CP000726|pid:none) Clostridium botulinum A str. ATC...    33   7.3
AJ278970_1(AJ278970|pid:none) Leishmania mexicana lpg2 gene.           32   9.6

>(A7S1L6) RecName: Full=GDP-fucose transporter 1; AltName:
           Full=Solute carrier family 35 member C1 homolog;
          Length = 339

 Score = 36.6 bits (83), Expect = 0.51
 Identities = 28/110 (25%), Positives = 54/110 (49%), Gaps = 3/110 (2%)
 Frame = +2

Query: 257 YLSISVGLPYLNKAILSS---EYQFPLTSSLFQTMGAIVILLIFNLAQYRYQSGDLVQKS 427
           Y +IS+ L +LNK +LSS   +   PL  + +Q +  ++ L   +L   RY   D
Sbjct: 19  YWTISISLVFLNKYLLSSPDIKLDAPLFVTWYQCVVTVICLFFLSLLGDRYPWIDTFPA- 77

Query: 428 YFFDKNFIKKSYIMIPVSICFAAVMILTNVGIQKIPVDYHVVFKSTNIIW 577
            F  K  + K   ++P+S  F  ++   N+ ++ + V ++ V +S   ++
Sbjct: 78  -FHIKLSVAKQ--VLPLSAVFVGMITFNNLCLKNLGVSFYNVGRSLTTVF 124

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3268448
Number of Hits to DB: 661,525,529
Number of extensions: 10115392
Number of successful extensions: 26886
Number of sequences better than 10.0: 25
Number of HSP's gapped: 26867
Number of HSP's successfully gapped: 25
Length of query: 193
Length of database: 1,061,185,681
Length adjustment: 122
Effective length of query: 71
Effective length of database: 662,435,025
Effective search space: 47032886775
Effective search space used: 47032886775
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 30 (16.2 bits)
PSORT 

 psg: 0.75  gvh: 0.31  alm: 0.22  top: 0.37  tms: 0.20  mit: 0.18  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 1.00  m3b: 0.00  m_ : 0.00 

	 32.0 %: endoplasmic reticulum
	 28.0 %: plasma membrane
	 16.0 %: mitochondrial
	  8.0 %: nuclear
	  8.0 %: extracellular, including cell wall
	  4.0 %: Golgi
	  4.0 %: vesicles of secretory system

>> prediction for Contig-U04742-1 is end
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 2
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0