Homology vs CSM-cDNA |
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Homology vs DNA |
Query= Contig-U04729-1 (Contig-U04729-1Q) /CSM_Contig/Contig-U04729-1Q.Seq.d (251 letters)
Database: ddbj_A 102,105,510 sequences; 101,790,757,118 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value N
(AU071803) Dictyostelium discoideum slug cDNA, clone SSC553. 315 e-119 2 (AQ511741) HS_5119_A1_A03_SP6E RPCI-11 Human Male BAC Librar... 48 0.15 1 (CG673880) trs1612 trs Aegilops tauschii genomic clone trs06... 48 0.15 1 (AC091870) Homo sapiens chromosome 5 clone CTD-2385B5, WORKI... 38 0.20 4 (BX914220) Zebrafish DNA sequence from clone DKEYP-101F3 in ... 44 0.53 3 (BD061520) Genome DNA of symbiotic bacteria of aphid. 46 0.61 1 (AR409405) Sequence 1 from patent US 6632935. 46 0.61 1 (CU326409) Wallaby DNA sequence from clone MEKBa-509L14. 46 0.61 1 (DX542667) GH_MBb0080L06f GH_MBb Gossypium hirsutum genomic ... 46 0.61 1 (B88419) CpG0179B CpIOWAgDNA1 Cryptosporidium parvum genomic... 46 0.61 1 (CP001161) Buchnera aphidicola str. 5A (Acyrthosiphon pisum)... 46 0.61 1 (CP001158) Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisu... 46 0.61 1 (BA000003) Buchnera aphidicola str. APS (Acyrthosiphon pisum... 46 0.61 1 (AE016826) Buchnera aphidicola str. Bp (Baizongia pistaciae)... 46 0.61 1 (AC079184) Homo sapiens chromosome 8 clone RP11-296E5 map 8,... 38 0.69 4 (AC116986) Dictyostelium discoideum chromosome 2 map 2234041... 34 0.80 6 (ET755243) CHO_OF207xg15f1.ab1 CHO_OF Nicotiana tabacum geno... 34 1.7 2 (AL359262) Human DNA sequence from clone RP11-334O13 on chro... 38 2.1 5 (CT962513) Zebrafish DNA sequence from clone CH73-63K18 in l... 44 2.4 1 (BX511305) Zebrafish DNA sequence from clone DKEY-76H4 in li... 44 2.4 1 (AC139934) Mus musculus chromosome 12, clone RP23-39G14, com... 44 2.4 1 (AC115785) Mus musculus chromosome 12, clone RP23-170K17, co... 44 2.4 1 (AM910991) Plasmodium knowlesi strain H chromosome 9, comple... 44 2.4 1 (AM910983) Plasmodium knowlesi strain H chromosome 1, comple... 44 2.4 1 (AC208152) Homo sapiens FOSMID clone ABC9-43938200G13 from c... 44 2.4 1 (AC131951) Homo sapiens BAC clone RP11-452L12 from 4, comple... 44 2.4 1 (AC104513) Homo sapiens 3q BAC RP11-115O24 (Roswell Park Can... 44 2.4 1 (AC079910) Homo sapiens 3 BAC RP11-418B12 (Roswell Park Canc... 44 2.4 1 (AC152489) Dasypus novemcinctus clone VMRC5-84I11, WORKING D... 44 2.4 1 (AC141717) Apis mellifera clone CH224-57G21, WORKING DRAFT S... 44 2.4 1 (CU929561) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 2.4 1 (CU466356) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 2.4 1 (CU407022) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 2.4 1 (AC009922) Homo sapiens clone RP11-115O24, WORKING DRAFT SEQ... 44 2.4 1 (AK162871) Mus musculus adult male hypothalamus cDNA, RIKEN ... 44 2.4 1 (AZ735595) RPCI-24-70I6.TJB RPCI-24 Mus musculus genomic clo... 44 2.4 1 (DX041289) KBrB041F04R KBrB, Brassica rapa BamHI BAC library... 44 2.4 1 (CL433327) ZMMBBb0450G16f ZMMBBb (HindIII) Zea mays subsp. m... 44 2.4 1 (AV226749) Mus musculus 15 days embryo head cDNA, RIKEN full... 44 2.4 1 (CJ195953) Mus musculus mammary gland RCB-0526 Jyg-MC(A) cDN... 44 2.4 1 (CI999255) Marsupenaeus japonicus cDNA, clone:YAQ02A01NGRM00... 44 2.4 1 (BY723999) Mus musculus adult male hypothalamus cDNA, RIKEN ... 44 2.4 1 (BX093614) RZPD Homo sapiens cDNA clone IMAGp998O173999 = IM... 44 2.4 1 (BP858513) Arabidopsis thaliana cDNA clone:RAFL25-37-I18, 5'... 44 2.4 1 (AA934356) op27e09.s1 Soares_NFL_T_GBC_S1 Homo sapiens cDNA ... 44 2.4 1 (BB346959) Mus musculus 10 days neonate cerebellum cDNA, RIK... 44 2.4 1 (AP007836) Lotus japonicus genomic DNA, chromosome 4, clone:... 40 2.5 2 (AC150746) Mus musculus BAC clone RP23-364B18 from 6, comple... 32 2.5 7 (BD453026) Diagnosis of Diseases Associated with tumor suppr... 36 3.1 4 (AX251505) Sequence 473 from Patent WO0168912. 36 3.1 4 (AC069197) Homo sapiens chromosome 15, clone RP11-505I24, co... 36 3.2 4 (AF238380) Homo sapiens chromosome X multiple clones map p11... 38 4.4 3 (AC233512) Solanum tuberosum chromosome 1 clone RH145L13, **... 32 4.7 2 (AM451683) Vitis vinifera contig VV78X250320.5, whole genome... 34 5.5 2 (BJ370390) Dictyostelium discoideum cDNA clone:ddc53o22, 5' ... 38 6.0 2 (AM428720) Vitis vinifera contig VV78X223874.4, whole genome... 36 6.0 2 (AA783796) c8a09a1.f1 Aspergillus nidulans 24hr asexual deve... 34 6.3 2 (EJ337153) 1092963487676 Global-Ocean-Sampling_GS-28-01-01-1... 32 6.6 2 (AC205398) Zea mays chromosome 2 clone CH201-146G2; ZMMBBc01... 38 6.7 3 (BU426247) 603234622F1 CSEQRBN09 Gallus gallus cDNA clone Ch... 40 6.7 2 (AC023852) Homo sapiens chromosome 8 clone RP11-106J22 map 8... 38 6.8 2 (AC171168) Medicago truncatula chromosome 2 BAC clone mth2-9... 40 7.0 6 (EJ612373) 1092962056620 Global-Ocean-Sampling_GS-29-01-01-1... 32 7.0 2 (DN699949) CLJ26-F06.x1d-t SHGC-CLJ Gasterosteus aculeatus c... 30 7.3 3 (AC016462) Homo sapiens clone RP11-10O18, WORKING DRAFT SEQU... 38 7.9 4 (CG107483) PUFYE23TD ZM_0.6_1.0_KB Zea mays genomic clone ZM... 40 8.0 2 (CU062635) Zebrafish DNA sequence from clone DKEY-95B21 in l... 42 8.4 2 (ER333270) 1092344283314 Global-Ocean-Sampling_GS-34-01-01-1... 34 8.4 2 (AC116963) Dictyostelium discoideum chromosome 2 map 4657875... 42 8.6 8 (CR848032) Zebrafish DNA sequence from clone DKEY-62K3 in li... 32 9.0 5 (AF467886) Crioceris duodecimpunctata mitochondrion, complet... 36 9.1 4 (AP005850) Oryza sativa Japonica Group genomic DNA, chromoso... 38 9.1 3 (CU571242) S.lycopersicum DNA sequence from clone LE_HBa-164... 40 9.3 5 (AC194553) Pan troglodytes BAC clone CH251-435P13 from chrom... 42 9.5 1 (AC192480) Pan troglodytes BAC clone CH251-391M20 from chrom... 42 9.5 1 (FM992689) Candida dubliniensis CD36 chromosome 2, complete ... 42 9.5 1 (AP009318) Solanum lycopersicum genomic DNA, chromosome 8, c... 42 9.5 1 (CQ869688) Sequence 109 from Patent WO2004074320. 42 9.5 1 (AX600185) Sequence 30 from Patent WO0240677. 42 9.5 1 (GC698113) Sequence 13358 from patent US 6812339. 42 9.5 1 (Z81080) Caenorhabditis elegans Cosmid F39H2. 42 9.5 1 (U52002) Caenorhabditis elegans cosmid F08B4, complete seque... 42 9.5 1 (AL929355) Plasmodium falciparum strain 3D7, chromosome 9; s... 42 9.5 1 (AC116977) Dictyostelium discoideum chromosome 2 map 5515173... 42 9.5 1 (AC116956) Dictyostelium discoideum chromosome 2 map 1418423... 42 9.5 1 (AC115592) Dictyostelium discoideum chromosome 2 map 1-12595... 42 9.5 1 (AL034369) Human DNA sequence from clone RP6-149D17 on chrom... 42 9.5 1 (AC122620) Rattus norvegicus clone CH230-69G3, WORKING DRAFT... 42 9.5 1 (AC120755) Rattus norvegicus clone CH230-49L18, *** SEQUENCI... 42 9.5 1 (AC113822) Rattus norvegicus clone CH230-80O5, WORKING DRAFT... 42 9.5 1 (AC095171) Rattus norvegicus clone CH230-7K10, WORKING DRAFT... 42 9.5 1 (AC221748) Bos taurus clone CH240-387C13, WORKING DRAFT SEQU... 42 9.5 1 (AC221743) Bos taurus clone CH240-386P8, WORKING DRAFT SEQUE... 42 9.5 1 (AC199234) Pan troglodytes chromosome X clone CH251-681I5, W... 42 9.5 1 (AC192517) Chlorocebus aethiops clone CH252-236K8, WORKING D... 42 9.5 1 (AC190011) Nomascus leucogenys leucogenys clone CH271-466D10... 42 9.5 1 (AC180579) Strongylocentrotus purpuratus clone R3-3093A18, W... 42 9.5 1 (AC179788) Strongylocentrotus purpuratus clone R3-1015E01, W... 42 9.5 1 (AC178783) Strongylocentrotus purpuratus clone R3-21G01, WOR... 42 9.5 1 (AC176496) Strongylocentrotus purpuratus clone R3-3072E7, WO... 42 9.5 1 (AC175372) Colobus guereza clone CH272-391G18, WORKING DRAFT... 42 9.5 1 (AC006887) Caenorhabditis elegans clone Y59H11, *** SEQUENCI... 42 9.5 1 (FH924169) CHO_NF2020xh07f1.ab1 CHO_NF2 Nicotiana tabacum ge... 42 9.5 1 (EK574383) 1095521129074 Global-Ocean-Sampling_GS-32-01-01-1... 42 9.5 1 (EK538242) 1095516041970 Global-Ocean-Sampling_GS-32-01-01-1... 42 9.5 1 (EJ501554) 1095403637638 Global-Ocean-Sampling_GS-28-01-01-1... 42 9.5 1 (EJ350781) 1092963585815 Global-Ocean-Sampling_GS-28-01-01-1... 42 9.5 1 (EJ079995) 1095460014801 Global-Ocean-Sampling_GS-26-01-01-1... 42 9.5 1 (EJ037238) 1095454076812 Global-Ocean-Sampling_GS-26-01-01-1... 42 9.5 1 (DU907211) 421774 Tomato HindIII BAC Library Solanum lycoper... 42 9.5 1 (AL350928) Tetraodon nigroviridis genome survey sequence T3 ... 42 9.5 1 (AL211564) Tetraodon nigroviridis genome survey sequence T7 ... 42 9.5 1 (CW760752) OG_BBa0069K22.f OG_BBa Oryza glaberrima genomic c... 42 9.5 1 (CL861147) OR_CBa0092P19.f OR_CBa Oryza rufipogon genomic cl... 42 9.5 1 (CL857199) OR_CBa0087K05.r OR_CBa Oryza rufipogon genomic cl... 42 9.5 1 (CL803361) OR_CBa0015P13.f OR_CBa Oryza rufipogon genomic cl... 42 9.5 1 (AG310775) Mus musculus molossinus DNA, clone:MSMg01-093E16.... 42 9.5 1 (EH213590) USDA-FP_176381 WHMH (pink hibiscus mealybug) Maco... 42 9.5 1 (DY892690) CeleSEQ11290 Cunninghamella elegans pBluescript (... 42 9.5 1 (DV725411) RVL17574 Wackym-Soares normalized rat vestibular ... 42 9.5 1 (AU071767) Dictyostelium discoideum slug cDNA, clone SSC483. 42 9.5 1 (CK740260) USDA-FP_6402 Ridge pineapple sweet orange entire ... 42 9.5 1 (CF924303) DD017D06.ab1 Codonopsis lanceolata cDNA library C... 42 9.5 1 (CF653199) USDA-FP_003079 Ridge pineapple sweet orange entir... 42 9.5 1 (CA855395) PfESToac39f10.y1 Plasmodium falciparum 3D7 gameto... 42 9.5 1 (BG847606) 1024018B12.y1 C. reinhardtii CC-1690, normalized,... 42 9.5 1 (BE217855) hv30f10.x1 NCI_CGAP_Lu24 Homo sapiens cDNA clone ... 42 9.5 1 (BB391271) Mus musculus 0 day neonate cerebellum cDNA, RIKEN... 42 9.5 1 (BB253548) Mus musculus 7 days neonate cerebellum cDNA, RIKE... 42 9.5 1 (FE123840) LV_HC_RA077N21f Litopenaeus vannamei hemocyte cDN... 42 9.5 1
>(AU071803) Dictyostelium discoideum slug cDNA, clone SSC553. Length = 240
Score = 315 bits (159), Expect(2) = e-119 Identities = 159/159 (100%) Strand = Plus / Plus
Query: 1 tggatttataacagaggttattgtaggtggtaaaacttttagaggaatcgtttttgagga 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 tggatttataacagaggttattgtaggtggtaaaacttttagaggaatcgtttttgagga 60
Query: 61 tttgaagagctcaaatcaaacaaataatcattcccaaaacttttcaccaaatcaatctgg 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61 tttgaagagctcaaatcaaacaaataatcattcccaaaacttttcaccaaatcaatctgg 120
Query: 121 aaccaatttaaataatagtaatagcaatataccttcttc 159 ||||||||||||||||||||||||||||||||||||||| Sbjct: 121 aaccaatttaaataatagtaatagcaatataccttcttc 159
Score = 145 bits (73), Expect(2) = e-119 Identities = 73/73 (100%) Strand = Plus / Plus
Query: 168 ttaaagataaaaatatttctccttcttcttttttaccaacaatagggtcaacaacctcta 227 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 168 ttaaagataaaaatatttctccttcttcttttttaccaacaatagggtcaacaacctcta 227
Query: 228 caagcaatccatt 240 ||||||||||||| Sbjct: 228 caagcaatccatt 240
Lambda K H 1.37 0.711 1.31
Matrix: blastn matrix:1 -3 Number of Sequences: 102105510 Number of Hits to DB: 355,564,112 Number of extensions: 24388203 Number of successful extensions: 7552170 Number of sequences better than 10.0: 134 Length of query: 251 Length of database: 101,790,757,118 Length adjustment: 23 Effective length of query: 228 Effective length of database: 99,442,330,388 Effective search space: 22672851328464 Effective search space used: 22672851328464 X1: 11 (21.8 bits) S2: 21 (42.1 bits)
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Homology vs Protein |
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