Contig-U04729-1
Contig ID Contig-U04729-1
Contig update 2001. 8.29
Contig sequence
>Contig-U04729-1 (Contig-U04729-1Q) /CSM_Contig/Contig-U04729-1Q.Seq.d
TGGATTTATAACAGAGGTTATTGTAGGTGGTAAAACTTTTAGAGGAATCG
TTTTTGAGGATTTGAAGAGCTCAAATCAAACAAATAATCATTCCCAAAAC
TTTTCACCAAATCAATCTGGAACCAATTTAAATAATAGTAATAGCAATAT
ACCTTCTTCAAAAAAAATTAAAGATAAAAATATTTCTCCTTCTTCTTTTT
TACCAACAATAGGGTCAACAACCTCTACAAGCAATCCATTATCTAATGGG
T

Gap no gap
Contig length 251
Chromosome number (1..6, M) 5
Chromosome length 5062330
Start point 1037629
End point 1037880
Strand (PLUS/MINUS) PLUS
Number of clones 1
Number of EST 1
Link to clone list U04729
List of clone(s)

est1=SSC553F,1,252
Translated Amino Acid sequence
GFITEVIVGGKTFRGIVFEDLKSSNQTNNHSQNFSPNQSGTNLNNSNSNIPSSKKIKDKN
ISPSSFLPTIGSTTSTSNPLSNG


Translated Amino Acid sequence (All Frames)
Frame A:
wiynrgycrw*nf*rnrf*gfeelksnk*sfpklftksiwnqfk****qytffkkn*r*k
yfsfffftnnrvnnlykqsii*w


Frame B:
GFITEVIVGGKTFRGIVFEDLKSSNQTNNHSQNFSPNQSGTNLNNSNSNIPSSKKIKDKN
ISPSSFLPTIGSTTSTSNPLSNG


Frame C:
dl*qrll*vvklleesflri*raqikqiiipktfhqinlepi*iiviaiyllqkklkiki
fllllfyqq*gqqplqaihylmg


own update 2004. 6.10
Homology vs CSM-cDNA
Query= Contig-U04729-1 (Contig-U04729-1Q)
/CSM_Contig/Contig-U04729-1Q.Seq.d
(251 letters)

Database: CSM
6905 sequences; 5,674,871 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U04729-1 (Contig-U04729-1Q) /CSM_Contig/Conti... 450 e-127
Contig-U01609-1 (Contig-U01609-1Q) /CSM_Contig/Conti... 42 3e-04
Contig-U14014-1 (Contig-U14014-1Q) /CSM_Contig/Conti... 38 0.004
Contig-U13711-1 (Contig-U13711-1Q) /CSM_Contig/Conti... 38 0.004
Contig-U12625-1 (Contig-U12625-1Q) /CSM_Contig/Conti... 38 0.004
Contig-U13543-1 (Contig-U13543-1Q) /CSM_Contig/Conti... 34 0.067
Contig-U12492-1 (Contig-U12492-1Q) /CSM_Contig/Conti... 34 0.067
Contig-U11815-1 (Contig-U11815-1Q) /CSM_Contig/Conti... 34 0.067
Contig-U11682-1 (Contig-U11682-1Q) /CSM_Contig/Conti... 34 0.067

>Contig-U04729-1 (Contig-U04729-1Q) /CSM_Contig/Contig-U04729-1Q.Seq.d
Length = 251

Score = 450 bits (227), Expect = e-127
Identities = 243/251 (96%)
Strand = Plus / Plus


Query: 1 tggatttataacagaggttattgtaggtggtaaaacttttagaggaatcgtttttgagga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tggatttataacagaggttattgtaggtggtaaaacttttagaggaatcgtttttgagga 60


Query: 61 tttgaagagctcaaatcaaacaaataatcattcccaaaacttttcaccaaatcaatctgg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tttgaagagctcaaatcaaacaaataatcattcccaaaacttttcaccaaatcaatctgg 120


Query: 121 aaccaatttaaataatagtaatagcaatataccttcttcnnnnnnnnttaaagataaaaa 180
||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 121 aaccaatttaaataatagtaatagcaatataccttcttcaaaaaaaattaaagataaaaa 180


Query: 181 tatttctccttcttcttttttaccaacaatagggtcaacaacctctacaagcaatccatt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tatttctccttcttcttttttaccaacaatagggtcaacaacctctacaagcaatccatt 240


Query: 241 atctaatgggt 251
|||||||||||
Sbjct: 241 atctaatgggt 251


>Contig-U01609-1 (Contig-U01609-1Q) /CSM_Contig/Contig-U01609-1Q.Seq.d
Length = 1245

Score = 42.1 bits (21), Expect = 3e-04
Identities = 21/21 (100%)
Strand = Plus / Plus


Query: 131 aataatagtaatagcaatata 151
|||||||||||||||||||||
Sbjct: 143 aataatagtaatagcaatata 163


Score = 34.2 bits (17), Expect = 0.067
Identities = 20/21 (95%)
Strand = Plus / Plus


Query: 131 aataatagtaatagcaatata 151
||||||||||||| |||||||
Sbjct: 210 aataatagtaataacaatata 230


Score = 32.2 bits (16), Expect = 0.26
Identities = 18/19 (94%)
Strand = Plus / Plus


Query: 133 taatagtaatagcaatata 151
||||||||||||||| |||
Sbjct: 39 taatagtaatagcaanata 57


Score = 30.2 bits (15), Expect = 1.0
Identities = 18/19 (94%)
Strand = Plus / Plus


Query: 131 aataatagtaatagcaata 149
||||| |||||||||||||
Sbjct: 105 aataacagtaatagcaata 123


>Contig-U14014-1 (Contig-U14014-1Q) /CSM_Contig/Contig-U14014-1Q.Seq.d
Length = 152

Score = 38.2 bits (19), Expect = 0.004
Identities = 19/19 (100%)
Strand = Plus / Minus


Query: 125 aatttaaataatagtaata 143
|||||||||||||||||||
Sbjct: 19 aatttaaataatagtaata 1


Database: CSM
Posted date: Jun 9, 2004 7:35 PM
Number of letters in database: 5,674,871
Number of sequences in database: 6905

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4984
Number of Sequences: 6905
Number of extensions: 4984
Number of successful extensions: 2040
Number of sequences better than 10.0: 319
length of query: 251
length of database: 5,674,871
effective HSP length: 15
effective length of query: 236
effective length of database: 5,571,296
effective search space: 1314825856
effective search space used: 1314825856
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)
dna update 2009. 6.28
Homology vs DNA
Query= Contig-U04729-1 (Contig-U04729-1Q) /CSM_Contig/Contig-U04729-1Q.Seq.d
(251 letters)

Database: ddbj_A
102,105,510 sequences; 101,790,757,118 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(AU071803) Dictyostelium discoideum slug cDNA, clone SSC553. 315 e-119 2
(AQ511741) HS_5119_A1_A03_SP6E RPCI-11 Human Male BAC Librar... 48 0.15 1
(CG673880) trs1612 trs Aegilops tauschii genomic clone trs06... 48 0.15 1
(AC091870) Homo sapiens chromosome 5 clone CTD-2385B5, WORKI... 38 0.20 4
(BX914220) Zebrafish DNA sequence from clone DKEYP-101F3 in ... 44 0.53 3
(BD061520) Genome DNA of symbiotic bacteria of aphid. 46 0.61 1
(AR409405) Sequence 1 from patent US 6632935. 46 0.61 1
(CU326409) Wallaby DNA sequence from clone MEKBa-509L14. 46 0.61 1
(DX542667) GH_MBb0080L06f GH_MBb Gossypium hirsutum genomic ... 46 0.61 1
(B88419) CpG0179B CpIOWAgDNA1 Cryptosporidium parvum genomic... 46 0.61 1
(CP001161) Buchnera aphidicola str. 5A (Acyrthosiphon pisum)... 46 0.61 1
(CP001158) Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisu... 46 0.61 1
(BA000003) Buchnera aphidicola str. APS (Acyrthosiphon pisum... 46 0.61 1
(AE016826) Buchnera aphidicola str. Bp (Baizongia pistaciae)... 46 0.61 1
(AC079184) Homo sapiens chromosome 8 clone RP11-296E5 map 8,... 38 0.69 4
(AC116986) Dictyostelium discoideum chromosome 2 map 2234041... 34 0.80 6
(ET755243) CHO_OF207xg15f1.ab1 CHO_OF Nicotiana tabacum geno... 34 1.7 2
(AL359262) Human DNA sequence from clone RP11-334O13 on chro... 38 2.1 5
(CT962513) Zebrafish DNA sequence from clone CH73-63K18 in l... 44 2.4 1
(BX511305) Zebrafish DNA sequence from clone DKEY-76H4 in li... 44 2.4 1
(AC139934) Mus musculus chromosome 12, clone RP23-39G14, com... 44 2.4 1
(AC115785) Mus musculus chromosome 12, clone RP23-170K17, co... 44 2.4 1
(AM910991) Plasmodium knowlesi strain H chromosome 9, comple... 44 2.4 1
(AM910983) Plasmodium knowlesi strain H chromosome 1, comple... 44 2.4 1
(AC208152) Homo sapiens FOSMID clone ABC9-43938200G13 from c... 44 2.4 1
(AC131951) Homo sapiens BAC clone RP11-452L12 from 4, comple... 44 2.4 1
(AC104513) Homo sapiens 3q BAC RP11-115O24 (Roswell Park Can... 44 2.4 1
(AC079910) Homo sapiens 3 BAC RP11-418B12 (Roswell Park Canc... 44 2.4 1
(AC152489) Dasypus novemcinctus clone VMRC5-84I11, WORKING D... 44 2.4 1
(AC141717) Apis mellifera clone CH224-57G21, WORKING DRAFT S... 44 2.4 1
(CU929561) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 2.4 1
(CU466356) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 2.4 1
(CU407022) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 2.4 1
(AC009922) Homo sapiens clone RP11-115O24, WORKING DRAFT SEQ... 44 2.4 1
(AK162871) Mus musculus adult male hypothalamus cDNA, RIKEN ... 44 2.4 1
(AZ735595) RPCI-24-70I6.TJB RPCI-24 Mus musculus genomic clo... 44 2.4 1
(DX041289) KBrB041F04R KBrB, Brassica rapa BamHI BAC library... 44 2.4 1
(CL433327) ZMMBBb0450G16f ZMMBBb (HindIII) Zea mays subsp. m... 44 2.4 1
(AV226749) Mus musculus 15 days embryo head cDNA, RIKEN full... 44 2.4 1
(CJ195953) Mus musculus mammary gland RCB-0526 Jyg-MC(A) cDN... 44 2.4 1
(CI999255) Marsupenaeus japonicus cDNA, clone:YAQ02A01NGRM00... 44 2.4 1
(BY723999) Mus musculus adult male hypothalamus cDNA, RIKEN ... 44 2.4 1
(BX093614) RZPD Homo sapiens cDNA clone IMAGp998O173999 = IM... 44 2.4 1
(BP858513) Arabidopsis thaliana cDNA clone:RAFL25-37-I18, 5'... 44 2.4 1
(AA934356) op27e09.s1 Soares_NFL_T_GBC_S1 Homo sapiens cDNA ... 44 2.4 1
(BB346959) Mus musculus 10 days neonate cerebellum cDNA, RIK... 44 2.4 1
(AP007836) Lotus japonicus genomic DNA, chromosome 4, clone:... 40 2.5 2
(AC150746) Mus musculus BAC clone RP23-364B18 from 6, comple... 32 2.5 7
(BD453026) Diagnosis of Diseases Associated with tumor suppr... 36 3.1 4
(AX251505) Sequence 473 from Patent WO0168912. 36 3.1 4
(AC069197) Homo sapiens chromosome 15, clone RP11-505I24, co... 36 3.2 4
(AF238380) Homo sapiens chromosome X multiple clones map p11... 38 4.4 3
(AC233512) Solanum tuberosum chromosome 1 clone RH145L13, **... 32 4.7 2
(AM451683) Vitis vinifera contig VV78X250320.5, whole genome... 34 5.5 2
(BJ370390) Dictyostelium discoideum cDNA clone:ddc53o22, 5' ... 38 6.0 2
(AM428720) Vitis vinifera contig VV78X223874.4, whole genome... 36 6.0 2
(AA783796) c8a09a1.f1 Aspergillus nidulans 24hr asexual deve... 34 6.3 2
(EJ337153) 1092963487676 Global-Ocean-Sampling_GS-28-01-01-1... 32 6.6 2
(AC205398) Zea mays chromosome 2 clone CH201-146G2; ZMMBBc01... 38 6.7 3
(BU426247) 603234622F1 CSEQRBN09 Gallus gallus cDNA clone Ch... 40 6.7 2
(AC023852) Homo sapiens chromosome 8 clone RP11-106J22 map 8... 38 6.8 2
(AC171168) Medicago truncatula chromosome 2 BAC clone mth2-9... 40 7.0 6
(EJ612373) 1092962056620 Global-Ocean-Sampling_GS-29-01-01-1... 32 7.0 2
(DN699949) CLJ26-F06.x1d-t SHGC-CLJ Gasterosteus aculeatus c... 30 7.3 3
(AC016462) Homo sapiens clone RP11-10O18, WORKING DRAFT SEQU... 38 7.9 4
(CG107483) PUFYE23TD ZM_0.6_1.0_KB Zea mays genomic clone ZM... 40 8.0 2
(CU062635) Zebrafish DNA sequence from clone DKEY-95B21 in l... 42 8.4 2
(ER333270) 1092344283314 Global-Ocean-Sampling_GS-34-01-01-1... 34 8.4 2
(AC116963) Dictyostelium discoideum chromosome 2 map 4657875... 42 8.6 8
(CR848032) Zebrafish DNA sequence from clone DKEY-62K3 in li... 32 9.0 5
(AF467886) Crioceris duodecimpunctata mitochondrion, complet... 36 9.1 4
(AP005850) Oryza sativa Japonica Group genomic DNA, chromoso... 38 9.1 3
(CU571242) S.lycopersicum DNA sequence from clone LE_HBa-164... 40 9.3 5
(AC194553) Pan troglodytes BAC clone CH251-435P13 from chrom... 42 9.5 1
(AC192480) Pan troglodytes BAC clone CH251-391M20 from chrom... 42 9.5 1
(FM992689) Candida dubliniensis CD36 chromosome 2, complete ... 42 9.5 1
(AP009318) Solanum lycopersicum genomic DNA, chromosome 8, c... 42 9.5 1
(CQ869688) Sequence 109 from Patent WO2004074320. 42 9.5 1
(AX600185) Sequence 30 from Patent WO0240677. 42 9.5 1
(GC698113) Sequence 13358 from patent US 6812339. 42 9.5 1
(Z81080) Caenorhabditis elegans Cosmid F39H2. 42 9.5 1
(U52002) Caenorhabditis elegans cosmid F08B4, complete seque... 42 9.5 1
(AL929355) Plasmodium falciparum strain 3D7, chromosome 9; s... 42 9.5 1
(AC116977) Dictyostelium discoideum chromosome 2 map 5515173... 42 9.5 1
(AC116956) Dictyostelium discoideum chromosome 2 map 1418423... 42 9.5 1
(AC115592) Dictyostelium discoideum chromosome 2 map 1-12595... 42 9.5 1
(AL034369) Human DNA sequence from clone RP6-149D17 on chrom... 42 9.5 1
(AC122620) Rattus norvegicus clone CH230-69G3, WORKING DRAFT... 42 9.5 1
(AC120755) Rattus norvegicus clone CH230-49L18, *** SEQUENCI... 42 9.5 1
(AC113822) Rattus norvegicus clone CH230-80O5, WORKING DRAFT... 42 9.5 1
(AC095171) Rattus norvegicus clone CH230-7K10, WORKING DRAFT... 42 9.5 1
(AC221748) Bos taurus clone CH240-387C13, WORKING DRAFT SEQU... 42 9.5 1
(AC221743) Bos taurus clone CH240-386P8, WORKING DRAFT SEQUE... 42 9.5 1
(AC199234) Pan troglodytes chromosome X clone CH251-681I5, W... 42 9.5 1
(AC192517) Chlorocebus aethiops clone CH252-236K8, WORKING D... 42 9.5 1
(AC190011) Nomascus leucogenys leucogenys clone CH271-466D10... 42 9.5 1
(AC180579) Strongylocentrotus purpuratus clone R3-3093A18, W... 42 9.5 1
(AC179788) Strongylocentrotus purpuratus clone R3-1015E01, W... 42 9.5 1
(AC178783) Strongylocentrotus purpuratus clone R3-21G01, WOR... 42 9.5 1
(AC176496) Strongylocentrotus purpuratus clone R3-3072E7, WO... 42 9.5 1
(AC175372) Colobus guereza clone CH272-391G18, WORKING DRAFT... 42 9.5 1
(AC006887) Caenorhabditis elegans clone Y59H11, *** SEQUENCI... 42 9.5 1
(FH924169) CHO_NF2020xh07f1.ab1 CHO_NF2 Nicotiana tabacum ge... 42 9.5 1
(EK574383) 1095521129074 Global-Ocean-Sampling_GS-32-01-01-1... 42 9.5 1
(EK538242) 1095516041970 Global-Ocean-Sampling_GS-32-01-01-1... 42 9.5 1
(EJ501554) 1095403637638 Global-Ocean-Sampling_GS-28-01-01-1... 42 9.5 1
(EJ350781) 1092963585815 Global-Ocean-Sampling_GS-28-01-01-1... 42 9.5 1
(EJ079995) 1095460014801 Global-Ocean-Sampling_GS-26-01-01-1... 42 9.5 1
(EJ037238) 1095454076812 Global-Ocean-Sampling_GS-26-01-01-1... 42 9.5 1
(DU907211) 421774 Tomato HindIII BAC Library Solanum lycoper... 42 9.5 1
(AL350928) Tetraodon nigroviridis genome survey sequence T3 ... 42 9.5 1
(AL211564) Tetraodon nigroviridis genome survey sequence T7 ... 42 9.5 1
(CW760752) OG_BBa0069K22.f OG_BBa Oryza glaberrima genomic c... 42 9.5 1
(CL861147) OR_CBa0092P19.f OR_CBa Oryza rufipogon genomic cl... 42 9.5 1
(CL857199) OR_CBa0087K05.r OR_CBa Oryza rufipogon genomic cl... 42 9.5 1
(CL803361) OR_CBa0015P13.f OR_CBa Oryza rufipogon genomic cl... 42 9.5 1
(AG310775) Mus musculus molossinus DNA, clone:MSMg01-093E16.... 42 9.5 1
(EH213590) USDA-FP_176381 WHMH (pink hibiscus mealybug) Maco... 42 9.5 1
(DY892690) CeleSEQ11290 Cunninghamella elegans pBluescript (... 42 9.5 1
(DV725411) RVL17574 Wackym-Soares normalized rat vestibular ... 42 9.5 1
(AU071767) Dictyostelium discoideum slug cDNA, clone SSC483. 42 9.5 1
(CK740260) USDA-FP_6402 Ridge pineapple sweet orange entire ... 42 9.5 1
(CF924303) DD017D06.ab1 Codonopsis lanceolata cDNA library C... 42 9.5 1
(CF653199) USDA-FP_003079 Ridge pineapple sweet orange entir... 42 9.5 1
(CA855395) PfESToac39f10.y1 Plasmodium falciparum 3D7 gameto... 42 9.5 1
(BG847606) 1024018B12.y1 C. reinhardtii CC-1690, normalized,... 42 9.5 1
(BE217855) hv30f10.x1 NCI_CGAP_Lu24 Homo sapiens cDNA clone ... 42 9.5 1
(BB391271) Mus musculus 0 day neonate cerebellum cDNA, RIKEN... 42 9.5 1
(BB253548) Mus musculus 7 days neonate cerebellum cDNA, RIKE... 42 9.5 1
(FE123840) LV_HC_RA077N21f Litopenaeus vannamei hemocyte cDN... 42 9.5 1

>(AU071803) Dictyostelium discoideum slug cDNA, clone SSC553.
Length = 240

Score = 315 bits (159), Expect(2) = e-119
Identities = 159/159 (100%)
Strand = Plus / Plus


Query: 1 tggatttataacagaggttattgtaggtggtaaaacttttagaggaatcgtttttgagga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tggatttataacagaggttattgtaggtggtaaaacttttagaggaatcgtttttgagga 60


Query: 61 tttgaagagctcaaatcaaacaaataatcattcccaaaacttttcaccaaatcaatctgg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tttgaagagctcaaatcaaacaaataatcattcccaaaacttttcaccaaatcaatctgg 120


Query: 121 aaccaatttaaataatagtaatagcaatataccttcttc 159
|||||||||||||||||||||||||||||||||||||||
Sbjct: 121 aaccaatttaaataatagtaatagcaatataccttcttc 159

Score = 145 bits (73), Expect(2) = e-119
Identities = 73/73 (100%)
Strand = Plus / Plus


Query: 168 ttaaagataaaaatatttctccttcttcttttttaccaacaatagggtcaacaacctcta 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 168 ttaaagataaaaatatttctccttcttcttttttaccaacaatagggtcaacaacctcta 227


Query: 228 caagcaatccatt 240
|||||||||||||
Sbjct: 228 caagcaatccatt 240

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 102105510
Number of Hits to DB: 355,564,112
Number of extensions: 24388203
Number of successful extensions: 7552170
Number of sequences better than 10.0: 134
Length of query: 251
Length of database: 101,790,757,118
Length adjustment: 23
Effective length of query: 228
Effective length of database: 99,442,330,388
Effective search space: 22672851328464
Effective search space used: 22672851328464
X1: 11 (21.8 bits)
S2: 21 (42.1 bits)

protein update 2009. 7.31
Homology vs Protein
Query= Contig-U04729-1 (Contig-U04729-1Q) /CSM_Contig/Contig-U04729-1Q.Seq.d
(251 letters)

Database: nrp_A
3,268,448 sequences; 1,061,185,681 total letters

Searching..................................................done

***** No hits found ******

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3268448
Number of Hits to DB: 258,333,147
Number of extensions: 3139861
Number of successful extensions: 5256
Number of sequences better than 10.0: 0
Number of HSP's gapped: 5256
Number of HSP's successfully gapped: 0
Length of query: 83
Length of database: 1,061,185,681
Length adjustment: 53
Effective length of query: 30
Effective length of database: 887,957,937
Effective search space: 26638738110
Effective search space used: 26638738110
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 27 (15.0 bits)

PSORT

psg: 0.70 gvh: 0.19 alm: 0.42 top: 0.53 tms: 0.00 mit: 0.19 mip: 0.04
nuc: 0.03 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

52.0 %: nuclear
36.0 %: cytoplasmic
4.0 %: cytoskeletal
4.0 %: vacuolar
4.0 %: Golgi

>> prediction for Contig-U04729-1 is nuc

VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 1
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0