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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U04727-1
Contig ID Contig-U04727-1
Contig update 2002. 9.13
Contig sequence 
>Contig-U04727-1 (Contig-U04727-1Q) /CSM_Contig/Contig-U04727-1Q.Seq.d
CTAAAATGGGTTTAGTTAATAAAATCGTTGTTACAAACGCAGATGGTTTT
GATAAAACTTTGCAAGATTCATTAAAATCTAATGAAACTGTTTTTGTTCA
ATTTATTTCAAGTATCGATAAAACCACTTGCTCATTATGGTGCAGAGATT
GTCAAGTTTCTGAACCAATTGTAAATTCAGTTTTCGAGAATTTACCAAAA
AATATCACCTATATTGAATGTCAAATTGAAAGAGAAGGATATAAAGGAAA
CCCAAATCATCCATATAGAACAAATCCAAACATTAAATTAACAGCAATTC
CAACTTTAATGTGCTTTACAAAGGATGGCCCAAAACCAAAAACTTTAGTA
GAAGAAGATTTAGCAAAAGAAGAGAATGTTAAACAATTTGTAAATGAATA
TTTATAAAAAGAAATAAAATAAAAAAAAAATAAAAAAAAAATTGAAAAAA
TAAAATAAAAAAAAAAAATAAAATAAAAAAAATAAAATTTAATATTAATC
AAT
Gap no gap
Contig length 503
Chromosome number (1..6, M) 2
Chromosome length 8467578
Start point 1483391
End point 1482883
Strand (PLUS/MINUS) MINUS
Number of clones 2
Number of EST 2
Link to clone list U04727
List of clone(s) 

est1=SSC547E,0,504
est2=SSH829E,1,504
Translated Amino Acid sequence 
KMGLVNKIVVTNADGFDKTLQDSLKSNETVFVQFISSIDKTTCSLWCRDCQVSEPIVNSV
FENLPKNITYIECQIEREGYKGNPNHPYRTNPNIKLTAIPTLMCFTKDGPKPKTLVEEDL
AKEENVKQFVNEYL*keik*kknkkkiekik*kkkik*kk*nlilin
Translated Amino Acid sequence (All Frames) 
Frame A:
lkwv*liksllqtqmvliklckih*nlmklflfnlfqvsikplahygaeivkflnql*iq
fsriyqkispilnvklkekdiketqiihieqiqtln*qqfql*calqrmaqnqkl**kki
*qkkrmlnnl*mniykkk*nkkkikkklkk*nkkkk*nkknki*y*s


Frame B:
*ngfs**nrcykrrwf**nfarfiki**ncfcsiyfkyr*nhllimvqrlssf*tnckfs
freftkkyhly*msn*krri*rkpkssi*nkskh*insnsnfnvlykgwpktknfsrrrf
skrrec*tick*ifikrnkikkk*kkn*knkikkknkikkikfninq


Frame C:
KMGLVNKIVVTNADGFDKTLQDSLKSNETVFVQFISSIDKTTCSLWCRDCQVSEPIVNSV
FENLPKNITYIECQIEREGYKGNPNHPYRTNPNIKLTAIPTLMCFTKDGPKPKTLVEEDL
AKEENVKQFVNEYL*keik*kknkkkiekik*kkkik*kk*nlilin
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U04727-1 (Contig-U04727-1Q)
/CSM_Contig/Contig-U04727-1Q.Seq.d
         (503 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U04727-1 (Contig-U04727-1Q) /CSM_Contig/Conti...   803  0.0
Contig-U09371-1 (Contig-U09371-1Q) /CSM_Contig/Conti...    40  0.002
Contig-U07878-1 (Contig-U07878-1Q) /CSM_Contig/Conti...    38  0.009
Contig-U07559-1 (Contig-U07559-1Q) /CSM_Contig/Conti...    38  0.009
Contig-U12328-1 (Contig-U12328-1Q) /CSM_Contig/Conti...    34  0.14
Contig-U12097-1 (Contig-U12097-1Q) /CSM_Contig/Conti...    32  0.55
Contig-U11677-1 (Contig-U11677-1Q) /CSM_Contig/Conti...    32  0.55
Contig-U10968-1 (Contig-U10968-1Q) /CSM_Contig/Conti...    32  0.55
Contig-U09422-1 (Contig-U09422-1Q) /CSM_Contig/Conti...    32  0.55
Contig-U06786-1 (Contig-U06786-1Q) /CSM_Contig/Conti...    32  0.55

>Contig-U04727-1 (Contig-U04727-1Q) /CSM_Contig/Contig-U04727-1Q.Seq.d
          Length = 503

 Score =  803 bits (405), Expect = 0.0
 Identities = 405/405 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctaaaatgggtttagttaataaaatcgttgttacaaacgcagatggttttgataaaactt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   ctaaaatgggtttagttaataaaatcgttgttacaaacgcagatggttttgataaaactt 60

                                                                       
Query: 61  tgcaagattcattaaaatctaatgaaactgtttttgttcaatttatttcaagtatcgata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  tgcaagattcattaaaatctaatgaaactgtttttgttcaatttatttcaagtatcgata 120

                                                                       
Query: 121 aaaccacttgctcattatggtgcagagattgtcaagtttctgaaccaattgtaaattcag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 aaaccacttgctcattatggtgcagagattgtcaagtttctgaaccaattgtaaattcag 180

                                                                       
Query: 181 ttttcgagaatttaccaaaaaatatcacctatattgaatgtcaaattgaaagagaaggat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ttttcgagaatttaccaaaaaatatcacctatattgaatgtcaaattgaaagagaaggat 240

                                                                       
Query: 241 ataaaggaaacccaaatcatccatatagaacaaatccaaacattaaattaacagcaattc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 ataaaggaaacccaaatcatccatatagaacaaatccaaacattaaattaacagcaattc 300

                                                                       
Query: 301 caactttaatgtgctttacaaaggatggcccaaaaccaaaaactttagtagaagaagatt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 caactttaatgtgctttacaaaggatggcccaaaaccaaaaactttagtagaagaagatt 360

                                                        
Query: 361 tagcaaaagaagagaatgttaaacaatttgtaaatgaatatttat 405
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 tagcaaaagaagagaatgttaaacaatttgtaaatgaatatttat 405


 Score = 32.2 bits (16), Expect = 0.55
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                           
Query: 488 tttaatattaatcaat 503
           ||||||||||||||||
Sbjct: 488 tttaatattaatcaat 503


>Contig-U09371-1 (Contig-U09371-1Q) /CSM_Contig/Contig-U09371-1Q.Seq.d
          Length = 1174

 Score = 40.1 bits (20), Expect = 0.002
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 277 caaacattaaattaacagca 296
           ||||||||||||||||||||
Sbjct: 399 caaacattaaattaacagca 380


>Contig-U07878-1 (Contig-U07878-1Q) /CSM_Contig/Contig-U07878-1Q.Seq.d
          Length = 812

 Score = 38.2 bits (19), Expect = 0.009
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 153 caagtttctgaaccaattg 171
           |||||||||||||||||||
Sbjct: 392 caagtttctgaaccaattg 410


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6227
Number of Sequences: 6905
Number of extensions: 6227
Number of successful extensions: 591
Number of sequences better than 10.0: 190
length of query: 503
length of database: 5,674,871
effective HSP length: 16
effective length of query: 487
effective length of database: 5,564,391
effective search space: 2709858417
effective search space used: 2709858417
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)
dna update 2009. 6.28
Homology vs DNA 
Query= Contig-U04727-1 (Contig-U04727-1Q) /CSM_Contig/Contig-U04727-1Q.Seq.d
         (503 letters)

Database: ddbj_A
           102,105,510 sequences; 101,790,757,118 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU038527) Dictyostelium discoideum slug cDNA, clone SSH829.      803   0.0    2
(C84048) Dictyostelium discoideum slug cDNA, clone SSC547.        398   0.0    3
(AC116921) Dictyostelium discoideum chromosome 2 map 4624505...   299   e-176  5
(AU071799) Dictyostelium discoideum slug cDNA, clone SSC547.      474   e-129  1
(DH171648) Oryzias latipes Fosmid clone:GOLWFno447_e02, forw...    52   0.021  1
(AE017196) Wolbachia endosymbiont of Drosophila melanogaster...    34   0.17   2
(EJ428563) 1093015240915 Global-Ocean-Sampling_GS-28-01-01-1...    48   0.32   1
(BP240278) Homo sapiens cDNA clone: HEP10791, Sugano cDNA li...    48   0.32   1
(FG346432) EST 1d05 - [Humulus lupulus] Humulus lupulus Seed...    36   0.64   2
(CX526580) s13dNF36D07AT062_513672 Aphid-Infected Shoots Med...    36   0.91   2
(FI099907) MUGQ_CH252P476J09T7_CH0155_039 CHORI-252 Vervet M...    46   1.3    1
(ET197542) MUGQ_CH252P396K06Sp6_CP752_021 CHORI-252 Vervet M...    46   1.3    1
(DU071333) 62216 Tomato HindIII BAC Library Solanum lycopers...    46   1.3    1
(EH233227) JGI_ACAC7335.fwd ACAC Phakopsora pachyrhizi TW72-...    46   1.3    1
(DC545458) Bombyx mori cDNA, clone:E_FL_phe-_03C23_F_0, 5' e...    46   1.3    1
(DC534782) Bombyx mori cDNA, clone:E_ET_J150_25E12_R_0, 3' e...    46   1.3    1
(BY931749) Bombyx mori cDNA, clone:E_EL_ovS0_28G04_R_0, 3' e...    46   1.3    1
(CP000764) Bacillus cereus subsp. cytotoxis NVH 391-98, comp...    46   1.3    1
(ER305843) 1092343748878 Global-Ocean-Sampling_GS-34-01-01-1...    40   1.6    2
(CT806423) Pan troglodytes chromosome X clone CH251-25B01 ma...    32   2.5    2
(CT943669) Pan troglodytes chromosome X clone CH251-484K12 m...    32   2.5    2
(AL356503) Human DNA sequence from clone RP13-159A24 on chro...    32   2.5    2
(CU407159) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    32   2.6    2
(AY741371) Emiliania huxleyi strain CCMP 373 chloroplast, co...    34   2.6    2
(BV471222) G591P614008RC1.T0 Clint Pan troglodytes verus STS...    32   3.4    2
(CT827847) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    36   3.7    3
(AL663026) Mouse DNA sequence from clone RP23-224M19 on chro...    44   5.0    1
(AC160560) Mus musculus BAC clone RP23-357O18 from chromosom...    44   5.0    1
(AM487442) Vitis vinifera contig VV78X143029.7, whole genome...    44   5.0    1
(DD308451) NUCLEIC ACID AND POLYPEPTIDE SEQUENCES FROM LAWSO...    44   5.0    1
(DD307082) NUCLEIC ACID AND POLYPEPTIDE SEQUENCES FROM LAWSO...    44   5.0    1
(DD305476) NUCLEIC ACID AND POLYPEPTIDE SEQUENCES FROM LAWSO...    44   5.0    1
(AC111439) Rattus norvegicus clone CH230-181N11, *** SEQUENC...    44   5.0    1
(AC103147) Rattus norvegicus clone CH230-36D10, *** SEQUENCI...    44   5.0    1
(AC170455) Bos taurus clone CH240-260D19, WORKING DRAFT SEQU...    44   5.0    1
(AZ931621) 474.dhz86g06.s1 Saccharomyces unisporus NRRL Y-15...    44   5.0    1
(EJ707481) 1092956060070 Global-Ocean-Sampling_GS-30-02-01-1...    44   5.0    1
(EJ394938) 1093011992755 Global-Ocean-Sampling_GS-28-01-01-1...    44   5.0    1
(ED939247) OA_CBa0119B08.r OA_CBa Oryza australiensis genomi...    44   5.0    1
(ED848692) OA_CBa0016M13.r OA_CBa Oryza australiensis genomi...    44   5.0    1
(DX890663) KBrH018H16R KBrH, Brassica rapa HindIII BAC libra...    44   5.0    1
(DU122345) KBrH107J19F Brassica rapa BAC library KBrH Brassi...    44   5.0    1
(CW563985) OA_ABa0087M22.r OA_ABa Oryza australiensis genomi...    44   5.0    1
(CT018689) KBrH127O13 genomic clone, KBrH (HindIII) BAC libr...    44   5.0    1
(DV129707) CV03054B2C12.f1 CV03-normalized library Euphorbia...    44   5.0    1
(DV127107) CV03047A1G01.f1 CV03-normalized library Euphorbia...    44   5.0    1
(AU272370) Dictyostelium discoideum gamete cDNA clone:FC-IC1...    44   5.0    1
(CX290869) C03001B03Rv OF1 Citrus clementina cDNA clone C030...    44   5.0    1
(CU494388) Theobroma cacao, mRNA sequence (KZ0AAD4YA14FM1).        44   5.0    1
(GE446407) 294578352 Nasonia vitripennis Adult Female Nasoni...    44   5.0    1
(GE366886) 292293934 Nasonia vitripennis Male Pupae Nasonia ...    44   5.0    1
(EV114785) 0120097 Brassica napus Root library Brassica napu...    44   5.0    1
(EV114702) 0120014 Brassica napus Root library Brassica napu...    44   5.0    1
(CP000487) Campylobacter fetus subsp. fetus 82-40, complete ...    44   5.0    1
(AM180252) Lawsonia intracellularis PHE/MN1-00.                    44   5.0    1
(AF289460) Helicobacter pylori isolate CR56 cytotoxin associ...    44   5.0    1
(AF289437) Helicobacter pylori isolate CR7 cytotoxin associa...    44   5.0    1
(CU582897) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    38   5.2    2
(AC234735) Brassica rapa subsp. pekinensis chromosome Linkag...    32   5.4    6
(ET639593) JBVS214TF JBVS Allium cepa genomic clone JBVS0_S1...    36   8.5    2
(ET640949) JBVS214TR JBVS Allium cepa genomic clone JBVS0_S1...    36   8.6    2
(ET643632) JBVRG44TF JBVR Allium cepa genomic clone JBVRG_RH...    36   8.8    2
(AC168505) Strongylocentrotus purpuratus clone R3-3108P22, W...    30   9.0    2

>(AU038527) Dictyostelium discoideum slug cDNA, clone SSH829.
          Length = 504

 Score =  803 bits (405), Expect(2) = 0.0
 Identities = 405/405 (100%)
 Strand = Plus / Plus


Query: 1   ctaaaatgggtttagttaataaaatcgttgttacaaacgcagatggttttgataaaactt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   ctaaaatgggtttagttaataaaatcgttgttacaaacgcagatggttttgataaaactt 60


Query: 61  tgcaagattcattaaaatctaatgaaactgtttttgttcaatttatttcaagtatcgata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  tgcaagattcattaaaatctaatgaaactgtttttgttcaatttatttcaagtatcgata 120


Query: 121 aaaccacttgctcattatggtgcagagattgtcaagtttctgaaccaattgtaaattcag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 aaaccacttgctcattatggtgcagagattgtcaagtttctgaaccaattgtaaattcag 180


Query: 181 ttttcgagaatttaccaaaaaatatcacctatattgaatgtcaaattgaaagagaaggat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ttttcgagaatttaccaaaaaatatcacctatattgaatgtcaaattgaaagagaaggat 240


Query: 241 ataaaggaaacccaaatcatccatatagaacaaatccaaacattaaattaacagcaattc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 ataaaggaaacccaaatcatccatatagaacaaatccaaacattaaattaacagcaattc 300


Query: 301 caactttaatgtgctttacaaaggatggcccaaaaccaaaaactttagtagaagaagatt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 caactttaatgtgctttacaaaggatggcccaaaaccaaaaactttagtagaagaagatt 360


Query: 361 tagcaaaagaagagaatgttaaacaatttgtaaatgaatatttat 405
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 tagcaaaagaagagaatgttaaacaatttgtaaatgaatatttat 405

 Score = 32.2 bits (16), Expect(2) = 0.0
 Identities = 16/16 (100%)
 Strand = Plus / Plus


Query: 488 tttaatattaatcaat 503
           ||||||||||||||||
Sbjct: 488 tttaatattaatcaat 503

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 102105510
Number of Hits to DB: 616,398,455
Number of extensions: 37799930
Number of successful extensions: 2956203
Number of sequences better than 10.0: 66
Length of query: 503
Length of database: 101,790,757,118
Length adjustment: 23
Effective length of query: 480
Effective length of database: 99,442,330,388
Effective search space: 47732318586240
Effective search space used: 47732318586240
X1: 11 (21.8 bits)
S2: 21 (42.1 bits)
protein update 2009. 7.31
Homology vs Protein 
Query= Contig-U04727-1 (Contig-U04727-1Q) /CSM_Contig/Contig-U04727-1Q.Seq.d
         (503 letters)

Database: nrp_A
           3,268,448 sequences; 1,061,185,681 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116921_17(AC116921|pid:none) Dictyostelium discoideum chromoso...   124   1e-27
AC116921_16(AC116921|pid:none) Dictyostelium discoideum chromoso...   100   3e-20
EF065518_1(EF065518|pid:none) Branchiostoma belcheri tsingtaunes...    65   1e-09
AC146704_10(AC146704|pid:none) Medicago truncatula clone mth2-10...    65   1e-09
AM502238_100(AM502238|pid:none) Leishmania infantum chromosome 20.     65   1e-09
AK004219_1(AK004219|pid:none) Mus musculus 18-day embryo whole b...    63   5e-09
AJ344103_1(AJ344103|pid:none) Mus musculus mRNA for putative 42-...    62   6e-09
AB008264_3(AB008264|pid:none) Arabidopsis thaliana genomic DNA, ...    62   6e-09
AK169882_1(AK169882|pid:none) Mus musculus NOD-derived CD11c +ve...    62   1e-08
BT047961_1(BT047961|pid:none) Salmo salar clone ssal-eve-524-100...    62   1e-08
AJ344102_1(AJ344102|pid:none) Bos taurus partial mRNA for putati...    61   1e-08
AC024860_1(AC024860|pid:none) Caenorhabditis elegans cosmid Y71H...    61   2e-08
AY086278_1(AY086278|pid:none) Arabidopsis thaliana clone 23293 m...    60   2e-08
(Q9BRA2) RecName: Full=Thioredoxin domain-containing protein 17;...    60   2e-08
BT079822_1(BT079822|pid:none) Esox lucius clone eluc-evq-511-009...    60   2e-08
(Q5REA8) RecName: Full=Thioredoxin domain-containing protein 17;...    60   3e-08
BT049443_1(BT049443|pid:none) Salmo salar clone ssal-evd-535-056...    60   4e-08
BT047774_1(BT047774|pid:none) Salmo salar clone ssal-evd-547-109...    59   5e-08
(Q6DBT3) RecName: Full=Thioredoxin domain-containing protein 17;...    59   7e-08
BC106589_1(BC106589|pid:none) Xenopus laevis hypothetical protei...    59   7e-08
BT083140_1(BT083140|pid:none) Anoplopoma fimbria clone afim-evh-...    58   1e-07
BT075123_1(BT075123|pid:none) Osmerus mordax clone omor-eva-510-...    58   1e-07
BT079671_1(BT079671|pid:none) Esox lucius clone eluc-evq-528-098...    58   1e-07
FN357310_1(FN357310|pid:none) Schistosoma mansoni genome sequenc...    57   2e-07
FN357310_2(FN357310|pid:none) Schistosoma mansoni genome sequenc...    56   6e-07
EU551603_1(EU551603|pid:none) Dermacentor variabilis isolate DvM...    52   6e-06
AY814403_1(AY814403|pid:none) Schistosoma japonicum SJCHGC02110 ...    52   1e-05
(Q9P7L1) RecName: Full=Thioredoxin domain-containing protein C21...    49   7e-05
BT071449_1(BT071449|pid:none) Picea sitchensis clone WS02913_G18...    49   9e-05
FN357754_4(FN357754|pid:none) Schistosoma mansoni genome sequenc...    45   0.001
AY814232_1(AY814232|pid:none) Schistosoma japonicum clone SJCHGC...    45   0.001
AY815347_1(AY815347|pid:none) Schistosoma japonicum SJCHGC01827 ...    45   0.001
BT055464_1(BT055464|pid:none) Zea mays full-length cDNA clone ZM...    44   0.002
AE001825_163(AE001825|pid:none) Deinococcus radiodurans R1 chrom...    43   0.004
DQ440348_1(DQ440348|pid:none) Aedes aegypti clone AET-447 thiore...    43   0.005
AY811097_1(AY811097|pid:none) Schistosoma japonicum SJCHGC02111 ...    40   0.024
AM270244_65(AM270244|pid:none) Aspergillus niger contig An11c027...    39   0.092
AM235208_1(AM235208|pid:none) Pisum sativum mitochondrial mRNA f...    38   0.12
CP001083_3575(CP001083|pid:none) Clostridium botulinum Ba4 str. ...    38   0.12
AP006725_130(AP006725|pid:none) Klebsiella pneumoniae NTUH-K2044...    37   0.20
AM412317_3440(AM412317|pid:none) Clostridium botulinum A str. AT...    37   0.27
CP000462_89(CP000462|pid:none) Aeromonas hydrophila subsp. hydro...    37   0.27
NRL(2TIR) Thioredoxin mutant with lys 36 replaced by glu (k36e) -      37   0.27
CP000644_4001(CP000644|pid:none) Aeromonas salmonicida subsp. sa...    37   0.27
A96499(A96499) hypothetical protein T10P12.4 [imported] - Arabid...    37   0.35
CS008397_1(CS008397|pid:none) Sequence 23 from Patent WO20050071...    37   0.35
(P0AA25) RecName: Full=Thioredoxin-1;          Short=Trx-1;  &(P...    37   0.35
CP000822_118(CP000822|pid:none) Citrobacter koseri ATCC BAA-895,...    37   0.35
U16857_2(U16857|pid:none) Fusion cloning vector pTRXFUS, complet...    37   0.35
M54881_1(M54881|pid:none) Escherichia coli thioredoxin (trxA) ge...    37   0.35
GM711552_1(GM711552|pid:none) Sequence 47 from Patent WO20080949...    37   0.35
AE003852_302(AE003852|pid:none) Vibrio cholerae O1 biovar eltor ...    37   0.35
AJ426489_6(AJ426489|pid:none) Buchnera aphidicola (Pemphigus spy...    37   0.35
CP000503_504(CP000503|pid:none) Shewanella sp. W3-18-1, complete...    37   0.35
AY128276_1(AY128276|pid:none) Arabidopsis thaliana At1g43560/T10...    37   0.35
CP000447_459(CP000447|pid:none) Shewanella frigidimarina NCIMB 4...    37   0.35
CS008405_1(CS008405|pid:none) Sequence 31 from Patent WO20050071...    37   0.35
CP001229_115(CP001229|pid:none) Sulfurihydrogenibium azorense Az...    37   0.35
AE005174_4741(AE005174|pid:none) Escherichia coli O157:H7 EDL933...    37   0.35
CP001322_2389(CP001322|pid:none) Desulfatibacillum alkenivorans ...    36   0.46
BX908798_379(BX908798|pid:none) Parachlamydia-related symbiont U...    36   0.46
CP000647_4230(CP000647|pid:none) Klebsiella pneumoniae subsp. pn...    36   0.46
CP000653_3969(CP000653|pid:none) Enterobacter sp. 638, complete ...    36   0.46
CP000087_2(CP000087|pid:none) Rickettsia bellii RML369-C, comple...    36   0.60
CP001087_1222(CP001087|pid:none) Desulfobacterium autotrophicum ...    36   0.60
AP007281_525(AP007281|pid:none) Lactobacillus reuteri JCM 1112 D...    36   0.60
AE000782_1267(AE000782|pid:none) Archaeoglobus fulgidus DSM 4304...    36   0.60
CS673612_1(CS673612|pid:none) Sequence 187 from Patent WO2007060...    36   0.60
AC010718_13(AC010718|pid:none) Arabidopsis thaliana chromosome 1...    35   0.78
AM286415_161(AM286415|pid:none) Yersinia enterocolitica subsp. e...    35   0.78
CP000826_159(CP000826|pid:none) Serratia proteamaculans 568, com...    35   0.78
BA000031_3001(BA000031|pid:none) Vibrio parahaemolyticus RIMD 22...    35   0.78
CP000668_3413(CP000668|pid:none) Yersinia pestis Pestoides F, co...    35   1.0
AC004238_23(AC004238|pid:none) Arabidopsis thaliana chromosome 2...    35   1.0
(P59527) RecName: Full=Thioredoxin;          Short=Trx;  &AE0168...    35   1.0
AP008232_2387(AP008232|pid:none) Sodalis glossinidius str. 'mors...    35   1.0
CP000783_3659(CP000783|pid:none) Enterobacter sakazakii ATCC BAA...    35   1.0
CP001600_86(CP001600|pid:none) Edwardsiella ictaluri 93-146, com...    35   1.0
CP001132_794(CP001132|pid:none) Acidithiobacillus ferrooxidans A...    35   1.0
AE017355_2061(AE017355|pid:none) Bacillus thuringiensis serovar ...    35   1.3
CU468135_195(CU468135|pid:none) Erwinia tasmaniensis strain ET1/...    35   1.3
(O51890) RecName: Full=Thioredoxin;          Short=Trx;  &AE0132...    35   1.3
AY084496_1(AY084496|pid:none) Arabidopsis thaliana clone 10950 m...    35   1.3
AM494475_434(AM494475|pid:none) Orientia tsutsugamushi Boryong c...    35   1.3
BX950851_1253(BX950851|pid:none) Erwinia carotovora subsp. atros...    35   1.3
AY552545_38(AY552545|pid:none) Uncultured marine gamma proteobac...    35   1.3
FM178379_147(FM178379|pid:none) Aliivibrio salmonicida LFI1238 c...    34   1.7
BA000037_3182(BA000037|pid:none) Vibrio vulnificus YJ016 DNA, ch...    34   1.7
AE016795_890(AE016795|pid:none) Vibrio vulnificus CMCP6 chromoso...    34   1.7
CP000140_437(CP000140|pid:none) Parabacteroides distasonis ATCC ...    34   1.7
(Q92JR5) RecName: Full=Thioredoxin;          Short=Trx;  &AE0069...    34   1.7
CP000789_298(CP000789|pid:none) Vibrio harveyi ATCC BAA-1116 chr...    34   1.7
FM954972_2873(FM954972|pid:none) Vibrio splendidus LGP32 chromos...    34   1.7
CP000568_356(CP000568|pid:none) Clostridium thermocellum ATCC 27...    34   1.7
CP000563_3862(CP000563|pid:none) Shewanella baltica OS155, compl...    34   1.7
CP000562_226(CP000562|pid:none) Methanoculleus marisnigri JR1, c...    34   2.3
AE017220_3821(AE017220|pid:none) Salmonella enterica subsp. ente...    34   2.3
(Q4UNK3) RecName: Full=Thioredoxin;          Short=Trx;                34   2.3
CP000507_3206(CP000507|pid:none) Shewanella amazonensis SB2B, co...    34   2.3
CP000453_364(CP000453|pid:none) Alkalilimnicola ehrlichii MLHE-1...    34   2.3
(P57653) RecName: Full=Thioredoxin;          Short=Trx;  &B84999...    34   2.3
CP000053_2(CP000053|pid:none) Rickettsia felis URRWXCal2, comple...    34   2.3
AF095750_1(AF095750|pid:none) Arabidopsis thaliana thioredoxin m...    34   2.3
AE014133_1693(AE014133|pid:none) Streptococcus mutans UA159, com...    34   2.3
AE017333_3005(AE017333|pid:none) Bacillus licheniformis DSM 13, ...    33   3.0
AM406671_772(AM406671|pid:none) Lactococcus lactis subsp. cremor...    33   3.0
AP008207_3754(AP008207|pid:none) Oryza sativa (japonica cultivar...    33   3.0
AP003263_29(AP003263|pid:none) Oryza sativa Japonica Group genom...    33   3.0
CP000425_1663(CP000425|pid:none) Lactococcus lactis subsp. cremo...    33   3.0
AE005176_1644(AE005176|pid:none) Lactococcus lactis subsp. lacti...    33   3.0
CP000409_2(CP000409|pid:none) Rickettsia canadensis str. McKiel,...    33   3.0
(O34357) RecName: Full=Thioredoxin-like protein ytpP;  &AF008220...    33   3.9
AP009608_105(AP009608|pid:none) Mycoplasma fermentans PG18 DNA, ...    33   3.9
CP001655_155(CP001655|pid:none) Dickeya zeae Ech1591, complete g...    33   3.9
CP000302_443(CP000302|pid:none) Shewanella denitrificans OS217, ...    33   3.9
AE017354_2873(AE017354|pid:none) Legionella pneumophila subsp. p...    33   3.9
CP000388_4188(CP000388|pid:none) Pseudoalteromonas atlantica T6c...    33   5.0
CP000251_2488(CP000251|pid:none) Anaeromyxobacter dehalogenans 2...    33   5.0
CP001037_3540(CP001037|pid:none) Nostoc punctiforme PCC 73102, c...    33   5.0
CP000806_3984(CP000806|pid:none) Cyanothece sp. ATCC 51142 circu...    33   5.0
AY838902_1(AY838902|pid:none) Antrodia camphorata thioredoxin mR...    33   5.0
(Q46XB8) RecName: Full=Monofunctional biosynthetic peptidoglycan...    33   5.0
BX569691_13(BX569691|pid:none) Synechococcus sp. WH8102 complete...    33   5.0
AE000657_1324(AE000657|pid:none) Aquifex aeolicus VF5, complete ...    33   5.0
AE017340_2350(AE017340|pid:none) Idiomarina loihiensis L2TR, com...    33   5.0
CP001101_1520(CP001101|pid:none) Chlorobium phaeobacteroides BS1...    32   6.6
CP000439_833(CP000439|pid:none) Francisella tularensis subsp. no...    32   6.6
AE001437_3036(AE001437|pid:none) Clostridium acetobutylicum ATCC...    32   6.6
AP007165_8(AP007165|pid:none) Aspergillus oryzae RIB40 genomic D...    32   6.6
AE017198_1458(AE017198|pid:none) Lactobacillus johnsonii NCC 533...    32   6.6
AM942759_3283(AM942759|pid:none) Proteus mirabilis strain HI4320...    32   6.6
CT978603_738(CT978603|pid:none) Synechococcus sp. RCC307 genomic...    32   6.6
(P45981) RecName: Full=Galactose-1-phosphate uridylyltransferase...    32   6.6
CP000478_1691(CP000478|pid:none) Syntrophobacter fumaroxidans MP...    32   6.6
CP000422_1188(CP000422|pid:none) Pediococcus pentosaceus ATCC 25...    32   6.6
AE017126_1137(AE017126|pid:none) Prochlorococcus marinus subsp. ...    32   8.6
AM167904_2376(AM167904|pid:none) Bordetella avium 197N complete ...    32   8.6
BX548174_1227(BX548174|pid:none) Prochlorococcus marinus MED4 co...    32   8.6
CR940348_912(CR940348|pid:none) Theileria annulata strain Ankara...    32   8.6
AP008981_31(AP008981|pid:none) Orientia tsutsugamushi str. Ikeda...    32   8.6
CP000931_3857(CP000931|pid:none) Shewanella halifaxensis HAW-EB4...    32   8.6
CP001601_2523(CP001601|pid:none) Corynebacterium aurimucosum ATC...    32   8.6
CP000685_3915(CP000685|pid:none) Flavobacterium johnsoniae UW101...    32   8.6

>AC116921_17(AC116921|pid:none) Dictyostelium discoideum chromosome
           2 map 4624505-4657775 strain AX4, complete sequence.
          Length = 62

 Score =  124 bits (312), Expect = 1e-27
 Identities = 60/62 (96%), Positives = 61/62 (98%)
 Frame = +3

Query: 6   MGLVNKIVVTNADGFDKTLQDSLKSNETVFVQFISSIDKTTCSLWCRDCQVSEPIVNSVF 185
           MGLVNKIVVTN +GFDKTLQDSLKSNETVFVQFISSIDKTTCSLWCRDCQVSEPIVNSVF
Sbjct: 1   MGLVNKIVVTNPNGFDKTLQDSLKSNETVFVQFISSIDKTTCSLWCRDCQVSEPIVNSVF 60

Query: 186 EN 191
           EN
Sbjct: 61  EN 62

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3268448
Number of Hits to DB: 586,238,151
Number of extensions: 10579757
Number of successful extensions: 29946
Number of sequences better than 10.0: 143
Number of HSP's gapped: 29910
Number of HSP's successfully gapped: 143
Length of query: 167
Length of database: 1,061,185,681
Length adjustment: 119
Effective length of query: 48
Effective length of database: 672,240,369
Effective search space: 32267537712
Effective search space used: 32267537712
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 30 (16.2 bits)
PSORT 

 psg: 0.73  gvh: 0.44  alm: 0.47  top: 0.53  tms: 0.00  mit: 0.17  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 24.0 %: nuclear
	 12.0 %: cytoskeletal
	 12.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: endoplasmic reticulum

>> prediction for Contig-U04727-1 is cyt
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 2
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0