Contig-U04725-1
Contig ID Contig-U04725-1
Contig update 2001. 8.29
Contig sequence
>Contig-U04725-1 (Contig-U04725-1Q) /CSM_Contig/Contig-U04725-1Q.Seq.d
AAATTGAATTATTCATTGATTAGAAATAATACATTTAAAATTTTAAAAAG
AAGAATGACAACAGCAACTACAGCAACAATTAAAATTAATGGTAATGATA
CTCCATTAACAATTATTCCAAATGAAATTAGTTTAGAAACAGTTATGTCT
GCACCAAATTTTAATAAATGGATAAAGAAAATGGAATTAGAGAAAGAATT
AAAAGTAAATAGTATTTCAGTTCAATCAGTTGATATGTTTGGTAAAAATG
TTGGATTTCTTAAATTTAAAGCAGATGTCGTCACAGTGAAAGAGGGTAGA
GTCGTGCCAGGTATCATTTTCTGTCGTGGTGGTTCCGTTGCAATTTTAGT
GATTTTAAAATCAAAAGAAACCGGTAAAGAATATTCAGTATTAACTGTTC
AAACTCGTGTACCAGTTGCATCTTTCCAATATTCTGAAATTCCTGCTGGT
ATGTTAGATGGTTCTGGTCATTTCGTTGGTGTTGCTGCAAAAGAATTAAA
AGAAGAAACAGGATTAGAAGTATCTGAAGATAAATTAATAGATTTAACAA
AATTAGCATATGGAACAGAAGTTGATGGTGTTTATCCAAGTCCAGGTGGT
TGTGATGAGTTTATTAGATTATT

Gap no gap
Contig length 623
Chromosome number (1..6, M) 2
Chromosome length 8467578
Start point 131015
End point 131638
Strand (PLUS/MINUS) PLUS
Number of clones 1
Number of EST 1
Link to clone list U04725
List of clone(s)

est1=SSC543F,1,624
Translated Amino Acid sequence
KLNYSLIRNNTFKILKRRMTTATTATIKINGNDTPLTIIPNEISLETVMSAPNFNKWIKK
MELEKELKVNSISVQSVDMFGKNVGFLKFKADVVTVKEGRVVPGIIFCRGGSVAILVILK
SKETGKEYSVLTVQTRVPVASFQYSEIPAGMLDGSGHFVGVAAKELKEETGLEVSEDKLI
DLTKLAYGTEVDGVYPSPGGCDEFIRL


Translated Amino Acid sequence (All Frames)
Frame A:
KLNYSLIRNNTFKILKRRMTTATTATIKINGNDTPLTIIPNEISLETVMSAPNFNKWIKK
MELEKELKVNSISVQSVDMFGKNVGFLKFKADVVTVKEGRVVPGIIFCRGGSVAILVILK
SKETGKEYSVLTVQTRVPVASFQYSEIPAGMLDGSGHFVGVAAKELKEETGLEVSEDKLI
DLTKLAYGTEVDGVYPSPGGCDEFIRL


Frame B:
n*iih*leiihlkf*kee*qqqlqqqlklmvmilh*qlfqmklv*kqlclhqiling*rk
wn*rkn*k*ivfqfnqliclvkmldflnlkqmssq*krvescqvsfsvvvvplqf**f*n
qkkpvkniqy*lfklvyqlhlsnilkfllvc*mvlvislvllqkn*kkkqd*kylkin**
i*qn*hmeqklmvfiqvqvvvmslldy


Frame C:
ielfid*k*yi*nfkkkndnsnysnn*n*w**ysinnysk*n*frnsyvctkf**mdken
gireriksk*yfssis*yvw*kcwis*i*srcrhserg*sraryhflswwfrcnfsdfki
krnr*rifsincsnsctscifpif*nscwyvrwfwsfrwccckrikrrnrirsi*r*inr
fnkisiwnrs*wclsksrwl**vy*ii


own update 2004. 6.10
Homology vs CSM-cDNA
Query= Contig-U04725-1 (Contig-U04725-1Q)
/CSM_Contig/Contig-U04725-1Q.Seq.d
(623 letters)

Database: CSM
6905 sequences; 5,674,871 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U04725-1 (Contig-U04725-1Q) /CSM_Contig/Conti... 1235 0.0
Contig-U14578-1 (Contig-U14578-1Q) /CSM_Contig/Conti... 40 0.003
Contig-U12757-1 (Contig-U12757-1Q) /CSM_Contig/Conti... 40 0.003
Contig-U11683-1 (Contig-U11683-1Q) /CSM_Contig/Conti... 40 0.003
Contig-U14435-1 (Contig-U14435-1Q) /CSM_Contig/Conti... 38 0.011
Contig-U04099-1 (Contig-U04099-1Q) /CSM_Contig/Conti... 38 0.011
Contig-U13852-1 (Contig-U13852-1Q) /CSM_Contig/Conti... 36 0.044
Contig-U12811-1 (Contig-U12811-1Q) /CSM_Contig/Conti... 36 0.044
Contig-U12391-1 (Contig-U12391-1Q) /CSM_Contig/Conti... 36 0.044
Contig-U12363-1 (Contig-U12363-1Q) /CSM_Contig/Conti... 36 0.044

>Contig-U04725-1 (Contig-U04725-1Q) /CSM_Contig/Contig-U04725-1Q.Seq.d
Length = 623

Score = 1235 bits (623), Expect = 0.0
Identities = 623/623 (100%)
Strand = Plus / Plus


Query: 1 aaattgaattattcattgattagaaataatacatttaaaattttaaaaagaagaatgaca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aaattgaattattcattgattagaaataatacatttaaaattttaaaaagaagaatgaca 60


Query: 61 acagcaactacagcaacaattaaaattaatggtaatgatactccattaacaattattcca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 acagcaactacagcaacaattaaaattaatggtaatgatactccattaacaattattcca 120


Query: 121 aatgaaattagtttagaaacagttatgtctgcaccaaattttaataaatggataaagaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 aatgaaattagtttagaaacagttatgtctgcaccaaattttaataaatggataaagaaa 180


Query: 181 atggaattagagaaagaattaaaagtaaatagtatttcagttcaatcagttgatatgttt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 atggaattagagaaagaattaaaagtaaatagtatttcagttcaatcagttgatatgttt 240


Query: 241 ggtaaaaatgttggatttcttaaatttaaagcagatgtcgtcacagtgaaagagggtaga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 ggtaaaaatgttggatttcttaaatttaaagcagatgtcgtcacagtgaaagagggtaga 300


Query: 301 gtcgtgccaggtatcattttctgtcgtggtggttccgttgcaattttagtgattttaaaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 gtcgtgccaggtatcattttctgtcgtggtggttccgttgcaattttagtgattttaaaa 360


Query: 361 tcaaaagaaaccggtaaagaatattcagtattaactgttcaaactcgtgtaccagttgca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 tcaaaagaaaccggtaaagaatattcagtattaactgttcaaactcgtgtaccagttgca 420


Query: 421 tctttccaatattctgaaattcctgctggtatgttagatggttctggtcatttcgttggt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tctttccaatattctgaaattcctgctggtatgttagatggttctggtcatttcgttggt 480


Query: 481 gttgctgcaaaagaattaaaagaagaaacaggattagaagtatctgaagataaattaata 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 gttgctgcaaaagaattaaaagaagaaacaggattagaagtatctgaagataaattaata 540


Query: 541 gatttaacaaaattagcatatggaacagaagttgatggtgtttatccaagtccaggtggt 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gatttaacaaaattagcatatggaacagaagttgatggtgtttatccaagtccaggtggt 600


Query: 601 tgtgatgagtttattagattatt 623
|||||||||||||||||||||||
Sbjct: 601 tgtgatgagtttattagattatt 623


>Contig-U14578-1 (Contig-U14578-1Q) /CSM_Contig/Contig-U14578-1Q.Seq.d
Length = 395

Score = 40.1 bits (20), Expect = 0.003
Identities = 20/20 (100%)
Strand = Plus / Minus


Query: 33 atttaaaattttaaaaagaa 52
||||||||||||||||||||
Sbjct: 137 atttaaaattttaaaaagaa 118


>Contig-U12757-1 (Contig-U12757-1Q) /CSM_Contig/Contig-U12757-1Q.Seq.d
Length = 561

Score = 40.1 bits (20), Expect = 0.003
Identities = 20/20 (100%)
Strand = Plus / Minus


Query: 33 atttaaaattttaaaaagaa 52
||||||||||||||||||||
Sbjct: 96 atttaaaattttaaaaagaa 77


Database: CSM
Posted date: Jun 9, 2004 7:35 PM
Number of letters in database: 5,674,871
Number of sequences in database: 6905

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 14,128
Number of Sequences: 6905
Number of extensions: 14128
Number of successful extensions: 1826
Number of sequences better than 10.0: 228
length of query: 623
length of database: 5,674,871
effective HSP length: 16
effective length of query: 607
effective length of database: 5,564,391
effective search space: 3377585337
effective search space used: 3377585337
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2009. 6.28
Homology vs DNA
Query= Contig-U04725-1 (Contig-U04725-1Q) /CSM_Contig/Contig-U04725-1Q.Seq.d
(623 letters)

Database: ddbj_A
102,105,510 sequences; 101,790,757,118 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(AU071797) Dictyostelium discoideum slug cDNA, clone SSC543. 476 e-130 1
(AC216943) Populus trichocarpa clone POP051-N24, complete se... 38 0.001 2
(AC116957) Dictyostelium discoideum chromosome 2 map 1685067... 40 0.002 12
(AC212926) Populus trichocarpa clone POP014-K13, complete se... 36 0.005 2
(AC217032) Populus trichocarpa clone POP013-C12, complete se... 36 0.005 2
(AC213923) Populus trichocarpa clone POP039-M01, complete se... 36 0.005 2
(AC217036) Populus trichocarpa clone POP039-B10, complete se... 36 0.005 2
(AC184091) Populus trichocarpa clone Pop1-64B3, complete seq... 36 0.005 2
(AC184065) Populus trichocarpa clone Pop1-110C20, complete s... 36 0.005 2
(AC182711) Populus trichocarpa clone Pop1-85E23, complete se... 36 0.005 2
(AC213427) Populus trichocarpa clone POP088-F15, complete se... 36 0.005 2
(AC216687) Populus trichocarpa clone POP097-P17, complete se... 36 0.005 2
(AC183428) Populus trichocarpa clone Pop1-48N3, complete seq... 36 0.005 2
(AC210133) Populus trichocarpa clone POP090-D14, complete se... 36 0.005 2
(AC214101) Populus trichocarpa clone POP114-A12, complete se... 36 0.005 2
(AC213018) Populus trichocarpa clone POP062-M13, complete se... 36 0.005 2
(AC210549) Populus trichocarpa clone POP037-L01, complete se... 36 0.005 2
(AC183422) Populus trichocarpa clone Pop1-24A3, WORKING DRAF... 36 0.005 2
(AC182697) Populus trichocarpa clone Pop1-6M9, complete sequ... 36 0.005 2
(AC184100) Populus trichocarpa clone Pop1-99O7, complete seq... 36 0.005 2
(AC216461) Populus trichocarpa clone ACSB1069-M17, complete ... 36 0.005 2
(EL469199) CHTS7810.b2_D09.ab1 CHT(LMS) Jerusalem artichoke ... 54 0.007 1
(EL466040) CHTS4901.b1_J02.ab1 CHT(LMS) Jerusalem artichoke ... 54 0.007 1
(EL460957) CHTS15580.b1_G08.ab1 CHT(LMS) Jerusalem artichoke... 54 0.007 1
(EE650143) CHEM9993.b1_A03.ab1 CHE(LMS) serpentine sunflower... 54 0.007 1
(EE649868) CHEM9744.b1_P11.ab1 CHE(LMS) serpentine sunflower... 54 0.007 1
(EE645884) CHEM6200.b1_O13.ab1 CHE(LMS) serpentine sunflower... 54 0.007 1
(EE624387) CHWS2407.b1_N01.ab1 CHW(LMS) silverleaf sunflower... 54 0.007 1
(EE614795) CHWM2234.b1_D08.ab1 CHW(LMS) silverleaf sunflower... 54 0.007 1
(DY943874) CHPY11774.b1_K16.ab1 CHP(XYZ) plains sunflower He... 54 0.007 1
(DY943261) CHPY11132.b1_H24.ab1 CHP(XYZ) plains sunflower He... 54 0.007 1
(AJ412612) Helianthus annuus EST clone HaDplR202B11. 54 0.007 1
(CF811564) NA775 cDNA non acclimated Bluecrop library Vaccin... 54 0.007 1
(GE517607) CCFU2449.b1_B13.ab1 CCF(STU) sunflower Helianthus... 54 0.007 1
(GE517032) CCFU2141.b1_I08.ab1 CCF(STU) sunflower Helianthus... 54 0.007 1
(AC161749) Medicago truncatula chromosome 7 clone mth2-182g1... 40 0.007 5
(AC018721) Arabidopsis thaliana chromosome II section 217 of... 36 0.012 4
(AC068983) Homo sapiens chromosome 3 clone RP11-236B20, WORK... 36 0.015 7
(DL005698) NUCLEIC ACID PROBES AND NUCLEIC ACID ANALOG PROBES. 36 0.017 2
(CS459623) Sequence 104 from Patent WO2006117596. 36 0.017 2
(AC021473) Homo sapiens clone RP11-705H21, WORKING DRAFT SEQ... 36 0.017 2
(AC212923) Populus trichocarpa clone POP006-H09, complete se... 36 0.017 2
(AC097526) Homo sapiens BAC clone RP11-627H22 from 4, comple... 36 0.017 2
(AC109634) Homo sapiens chromosome 17 clone RP11-1008L6 map ... 36 0.018 2
(AC157618) Atelerix albiventris clone LB4-417P13, WORKING DR... 48 0.029 3
(AC168086) Bos taurus clone CH240-184I13, WORKING DRAFT SEQU... 40 0.033 9
(AE009951) Fusobacterium nucleatum subsp. nucleatum ATCC 255... 34 0.039 14
(CP000123) Mycoplasma capricolum subsp. capricolum ATCC 2734... 34 0.043 16
(AF085279) Arabidopsis thaliana ABA-regulated gene cluster, ... 36 0.044 4
(ER572373) 1093015797002 Global-Ocean-Sampling_GS-36-01-01-2... 46 0.049 2
(AC116984) Dictyostelium discoideum chromosome 2 map 2567470... 34 0.050 14
(CU611058) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 46 0.052 3
(ER524943) 1093015624730 Global-Ocean-Sampling_GS-35-01-01-1... 46 0.055 2
(AC099117) Rattus norvegicus clone CH230-186B24, WORKING DRA... 36 0.056 6
(AX344559) Sequence 10 from Patent WO0200932. 34 0.063 9
(AC216452) Populus trichocarpa clone POP018-D02, complete se... 36 0.063 2
(AC213416) Populus trichocarpa clone POP016-O23, complete se... 36 0.064 2
(AC213087) Populus trichocarpa clone POP084-F17, complete se... 36 0.065 2
(AZ688625) ENTKH40TR Entamoeba histolytica Sheared DNA Entam... 46 0.066 2
(AC213160) Populus trichocarpa clone POP105-D13, complete se... 36 0.066 2
(AZ674169) ENTHA11TF Entamoeba histolytica Sheared DNA Entam... 46 0.066 2
(AZ691335) ENTMB94TF Entamoeba histolytica Sheared DNA Entam... 46 0.068 2
(AC189894) Cavia porcellus clone CH234-272E6, WORKING DRAFT ... 40 0.068 4
(CP000728) Clostridium botulinum F str. Langeland, complete ... 36 0.069 17
(AC098070) Rattus norvegicus clone CH230-118K19, *** SEQUENC... 44 0.084 6
(AC087496) Homo sapiens chromosome 17, clone RP11-213B3, com... 40 0.090 2
(DY944537) CHPY12836.b1_H17.ab1 CHP(XYZ) plains sunflower He... 50 0.10 1
(DR401976) TKN077F03_631474 Taraxacum kok-saghyz root cDNA l... 50 0.10 1
(CP001056) Clostridium botulinum B str. Eklund 17B, complete... 50 0.10 1
(AC112082) Rattus norvegicus clone CH230-183C2, *** SEQUENCI... 40 0.12 5
(AC023513) Homo sapiens 12 BAC RP11-440G2 (Roswell Park Canc... 32 0.15 7
(AC011627) Homo sapiens chromosome 8 clone RP11-125A17 map 8... 40 0.17 5
(AC069070) Homo sapiens 3 BAC RP11-575H20 (Roswell Park Canc... 38 0.17 7
(AC210138) Populus trichocarpa clone POP112-C17, complete se... 38 0.18 4
(CP000903) Bacillus weihenstephanensis KBAB4, complete genome. 36 0.19 2
(AP002801) Homo sapiens genomic DNA, chromosome 11q, clone:R... 34 0.19 10
(AM643428) Entamoeba dispar GSS, clone dispar61d05.p1k. 34 0.19 3
(DH739645) Rattus norvegicus DNA, BAC clone: RNB1-313H11, 5'... 36 0.21 2
(AE014820) Plasmodium falciparum 3D7 chromosome 14 section 5... 38 0.21 8
(BX293980) Mycoplasma mycoides subsp. mycoides SC str. PG1, ... 38 0.27 16
(CL078164) CH216-148D22_RM1.1 CH216 Xenopus (Silurana) tropi... 42 0.28 2
(CU570830) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 0.28 4
(AC074239) Homo sapiens BAC clone CTD-2011N5 from 2, complet... 40 0.30 3
(AC079409) Homo sapiens 12q BAC RP11-423L22 (Roswell Park Ca... 48 0.37 2
(BX548174) Prochlorococcus marinus MED4 complete genome. 34 0.37 16
(AC128871) Rattus norvegicus clone CH230-502F22, *** SEQUENC... 34 0.37 5
(Z84481) Human DNA sequence from clone RP3-440O21 on chromos... 40 0.39 2
(CT573193) Zebrafish DNA sequence from clone DKEY-105D16 in ... 48 0.40 1
(BX548160) Zebrafish DNA sequence from clone DKEY-25G11 in l... 48 0.40 1
(BX511229) Zebrafish DNA sequence from clone CH211-194H2 in ... 48 0.40 1
(AC197613) MACACA MULATTA BAC clone CH250-336J8 from chromos... 48 0.40 1
(AM441428) Vitis vinifera contig VV78X148810.13, whole genom... 48 0.40 1
(AC162008) Bos taurus clone CH240-108B20, WORKING DRAFT SEQU... 48 0.40 1
(AC161855) Bos taurus clone CH240-95F11, WORKING DRAFT SEQUE... 48 0.40 1
(AC160736) Bos taurus clone CH240-85H10, WORKING DRAFT SEQUE... 48 0.40 1
(AC128936) Rattus norvegicus clone CH230-431N14, WORKING DRA... 48 0.40 1
(AC122597) Rattus norvegicus clone CH230-56A14, WORKING DRAF... 48 0.40 1
(AC115413) Rattus norvegicus clone CH230-127L4, WORKING DRAF... 48 0.40 1
(CR931727) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 48 0.40 1
(AC224610) Bos taurus clone CH240-480H8, WORKING DRAFT SEQUE... 48 0.40 1
(AC185739) Bos taurus clone RP42-281J14, WORKING DRAFT SEQUE... 48 0.40 1
(AC182293) Bos taurus clone CH240-488B5, WORKING DRAFT SEQUE... 48 0.40 1
(AC025316) Homo sapiens clone RP11-263K4, WORKING DRAFT SEQU... 48 0.40 1
(DX432730) BE1067_P01_F IASMA L1 HindIII BAC library Vitis v... 48 0.40 1
(BG523629) 33-81 Stevia field grown leaf cDNA Stevia rebaudi... 48 0.40 1
(CP000806) Cyanothece sp. ATCC 51142 circular chromosome, co... 48 0.40 1
(AC192971) Pan troglodytes chromosome X clone CH251-661A14, ... 32 0.40 6
(AC015958) Homo sapiens chromosome 18 clone RP11-55N14 map 1... 44 0.42 5
(EF568108) Glossina pallidipes salivary gland hypertrophy vi... 40 0.45 7
(AC084277) Homo sapiens BAC clone RP11-68O1 from 4, complete... 34 0.45 4
(AC027157) Homo sapiens chromosome 11, clone RP11-64I17, com... 40 0.51 4
(EY898627) RR1DL80TF RR1(CS) Raphanus raphanistrum subsp. ma... 42 0.53 2
(BX511269) Zebrafish DNA sequence from clone CH211-207N9 in ... 42 0.53 4
(AC217132) MACACA MULATTA BAC clone CH250-369H16 from chromo... 34 0.54 6
(AY418141) Pan troglodytes PPFIBP1 gene, VIRTUAL TRANSCRIPT,... 34 0.54 3
(AC127243) Mus musculus chromosome 7 clone RP24-411A24, WORK... 40 0.55 4
(AC015566) Homo sapiens chromosome 18 clone RP11-356P1 map 1... 44 0.55 5
(CU606983) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 40 0.56 2
(EJ857427) 1093017951860 Global-Ocean-Sampling_GS-30-02-01-1... 32 0.56 4
(CU984570) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 42 0.57 4
(EJ955722) 1093018971930 Global-Ocean-Sampling_GS-30-02-01-1... 32 0.58 4
(AC213343) Pongo abelii chromosome 12 clone CH276-497G5, WOR... 40 0.58 6
(AC202056) Pan troglodytes chromosome X clone CH251-483K13, ... 40 0.59 6
(AC172408) Strongylocentrotus purpuratus clone R3-14B15, WOR... 42 0.59 7
(CR376791) Mouse DNA sequence *** SEQUENCING IN PROGRESS ***... 34 0.61 7
(AC021387) Homo sapiens clone RP11-27G22, WORKING DRAFT SEQU... 40 0.63 3
(AY418140) Homo sapiens PPFIBP1 gene, VIRTUAL TRANSCRIPT, pa... 34 0.64 3
(CU928064) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 38 0.65 3
(AC191916) Spermophilus tridecemlineatus clone VMRC20-378G1,... 40 0.70 6
(AC116963) Dictyostelium discoideum chromosome 2 map 4657875... 32 0.71 8
(CU329672) Schizosaccharomyces pombe chromosome III. 36 0.72 2
(CU846021) A BAC library has been constructed from PN40024 g... 36 0.74 3
(AL121873) Human DNA sequence from clone RP13-362E11 on chro... 42 0.74 7
(AG177189) Pan troglodytes DNA, clone: RP43-048M13.TJ. 36 0.76 2
(EI722950) 2B421018K12TR BAC library from breast tumor sampl... 42 0.77 2
(AL121872) Human DNA sequence from clone RP13-348B13 on chro... 30 0.82 8
(EJ663492) 1092955033211 Global-Ocean-Sampling_GS-30-02-01-1... 40 0.83 2
(AC230685) Bos taurus clone CH240-501M5, WORKING DRAFT SEQUE... 34 0.85 2
(AC161686) Bos taurus clone CH240-101K11, WORKING DRAFT SEQU... 34 0.86 2
(AC216593) Populus trichocarpa clone POP016-L16, complete se... 36 0.86 2
(AC206446) Pongo abelii BAC clone CH276-210E15 from chromoso... 40 0.87 5
(CU896540) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 36 0.87 2
(AC216676) Populus trichocarpa clone POP046-B08, complete se... 36 0.88 2
(AC182657) Populus trichocarpa clone Pop1-122I6, complete se... 36 0.88 2
(AC118299) Rattus norvegicus clone CH230-15I1, WORKING DRAFT... 38 0.89 5
(AC174304) Medicago truncatula clone mth2-108f8, complete se... 32 0.91 8
(CD107680) AGENCOURT_14019665 NIH_MGC_179 Homo sapiens cDNA ... 40 0.92 2
(AC208087) Populus trichocarpa clone JGIACSB05-D20, complete... 36 0.92 2
(ER334097) 1092344291539 Global-Ocean-Sampling_GS-34-01-01-1... 42 0.93 2
(AY077834) Sheeppox virus NISKHI, complete genome. 38 0.94 5
(AY077832) Sheeppox virus 10700-99 strain TU-V02127, complet... 38 0.95 5
(AY077833) Sheeppox virus A, complete genome. 38 0.95 5
(AM412317) Clostridium botulinum A str. ATCC 3502 complete g... 34 0.95 16
(AL806515) Mouse DNA sequence from clone RP23-434M18 on chro... 36 0.98 3
(AC023630) Homo sapiens clone RP11-10N13, WORKING DRAFT SEQU... 36 1.0 7
(AC215775) Pongo abelii chromosome UNKNOWN clone CH276-68A24... 46 1.0 4
(Y14993) Schizosaccharomyces pombe gut2 gene. 36 1.0 2
(CU457446) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 34 1.0 7
(AC164199) Bos taurus clone CH240-151E24, *** SEQUENCING IN ... 40 1.1 4
(EA397622) Sequence 46446 from patent US 7314974. 36 1.1 2
(AC191473) Saimiri boliviensis boliviensis clone CH254-368B1... 40 1.1 4
(AC104637) Homo sapiens 3 BAC RP11-387L24 (Roswell Park Canc... 30 1.1 8
(AZ691895) ENTHB54TR Entamoeba histolytica Sheared DNA Entam... 38 1.1 2
(GC695163) Sequence 4536 from patent US 6812339. 34 1.2 3
(AL391666) Human DNA sequence from clone RP13-130D24 on chro... 32 1.2 6
(AC099143) Rattus norvegicus clone CH230-52G8, *** SEQUENCIN... 42 1.2 5
(AE017308) Mycoplasma mobile 163K complete genome. 38 1.2 14
(AL732540) Mouse DNA sequence from clone RP23-170L19 on chro... 36 1.3 8
(CU311197) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 42 1.3 4
(AC093185) Papio anubis clone RP41-232M9, WORKING DRAFT SEQU... 40 1.3 5
(AC230273) Bos taurus clone CH240-514J4, WORKING DRAFT SEQUE... 38 1.3 6
(CU862035) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 36 1.3 8
(AC206927) Pongo abelii BAC clone CH276-213D20 from chromoso... 42 1.3 6
(GC691147) Sequence 520 from patent US 6812339. 34 1.3 3
(AF034802) Homo sapiens liprin-beta1 mRNA, complete cds. 34 1.3 3
(AC010238) Homo sapiens chromosome 5 clone CTC-349C3, comple... 42 1.3 5
(AC112988) Mus musculus chromosome 5, clone RP24-294H5, comp... 46 1.4 3
(AC006195) Homo sapiens clone RP11-350H1 from 7p14-15, compl... 32 1.4 7
(AC115680) Dictyostelium discoideum chromosome 2 map 4915084... 38 1.4 4
(FC596559) CAXP9924.fwd CAXP Lottia gigantea from head, foot... 36 1.4 2
(AC093913) Homo sapiens BAC clone RP11-768G3 from 4, complet... 34 1.4 7
(AC116538) Drosophila melanogaster clone RP98-3F23, WORKING ... 38 1.5 5
(AC094358) Rattus norvegicus clone CH230-3C15, *** SEQUENCIN... 34 1.5 5
(AC200021) Spermophilus tridecemlineatus clone VMRC20-534B20... 44 1.5 3
(AC073923) Homo sapiens chromosome 1 clone RP11-147F14 map 1... 40 1.5 4
(FP085380) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 42 1.5 5
(AE017263) Mesoplasma florum L1 complete genome. 34 1.5 14
(AC171765) Atelerix albiventris clone LB4-501D9, WORKING DRA... 36 1.5 4
(AC013697) Homo sapiens clone RP11-22A8, WORKING DRAFT SEQUE... 32 1.5 8
(AC182051) Bos taurus clone CH240-341M2, WORKING DRAFT SEQUE... 34 1.6 5
(AC024726) Homo sapiens chromosome 21 clone RP11-313P5, WORK... 36 1.6 7
(CU463182) Zebrafish DNA sequence from clone CH73-369I17 in ... 46 1.6 1
(CR385057) Zebrafish DNA sequence from clone DKEY-189E2 in l... 46 1.6 1
(BX511074) Zebrafish DNA sequence from clone CH211-123D3 in ... 46 1.6 1
(AB129072) Homo sapiens DNA, STS on chromosome 6, D6S0141i, ... 46 1.6 1
(AC163990) Mus musculus chromosome 5, clone RP24-166G8, comp... 46 1.6 1
(AM427820) Vitis vinifera contig VV78X055578.7, whole genome... 46 1.6 1
(DJ458020) Method for analysing genome using microsatellite ... 46 1.6 1
(CS790011) Sequence 1267 from Patent WO2005031001. 46 1.6 1
(CQ600836) Sequence 28594 from Patent WO0171042. 46 1.6 1
(GC870520) Sequence 185765 from patent US 6812339. 46 1.6 1
(GC701811) Sequence 17056 from patent US 6812339. 46 1.6 1
(GC696764) Sequence 12008 from patent US 6812339. 46 1.6 1
(AE014134) Drosophila melanogaster chromosome 2L, complete s... 46 1.6 1
(AC092216) Drosophila melanogaster, chromosome 2L, region 25... 46 1.6 1
(AC004758) Drosophila melanogaster DNA sequence (P1s DS06106... 46 1.6 1
(AL359500) Human DNA sequence from clone RP11-394J19 on chro... 46 1.6 1
(AL355580) Human DNA sequence from clone RP11-76K10 on chrom... 46 1.6 1
(AL158839) Human DNA sequence from clone RP11-180O5 on chrom... 46 1.6 1
(AL118519) Human DNA sequence from clone RP1-215J18 on chrom... 46 1.6 1
(AC096669) Homo sapiens BAC clone RP11-380G16 from 2, comple... 46 1.6 1
(AC068725) Homo sapiens chromosome 2 clone RP11-737H13, comp... 46 1.6 1
(AC150452) Callithrix jacchus clone CH259-229E12, WORKING DR... 46 1.6 1
(AC140180) Homo sapiens chromosome 5 clone RP11-943M15, WORK... 46 1.6 1
(AC128176) Rattus norvegicus clone CH230-315F1, *** SEQUENCI... 46 1.6 1
(AC125552) Rattus norvegicus clone CH230-6P23, *** SEQUENCIN... 46 1.6 1
(AC109865) Rattus norvegicus clone CH230-291L18, *** SEQUENC... 46 1.6 1
(AC109067) Rattus norvegicus clone CH230-76E16, *** SEQUENCI... 46 1.6 1
(FP103068) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 1.6 1
(FP017278) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 46 1.6 1
(CU695181) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 1.6 1
(CU694781) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 1.6 1
(CU682767) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 46 1.6 1
(CT737382) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 1.6 1
(AC224185) Bos taurus clone CH240-447F11, WORKING DRAFT SEQU... 46 1.6 1
(AC217881) Solanum tuberosum chromosome 6 clone RHPOTKEY093D... 46 1.6 1
(AC208768) Saimiri boliviensis boliviensis clone CH254-418M2... 46 1.6 1
(AC206066) Pongo abelii chromosome UNKNOWN clone CH276-241B3... 46 1.6 1
(AC190353) Aotus nancymaae clone CH258-516H7, WORKING DRAFT ... 46 1.6 1
(AC188491) Aotus nancymaae clone CH258-338C4, WORKING DRAFT ... 46 1.6 1
(AC017377) Drosophila melanogaster, *** SEQUENCING IN PROGRE... 46 1.6 1
(AZ531208) ENTBD84TR Entamoeba histolytica Sheared DNA Entam... 46 1.6 1
(FI356088) CH321-53O16.y CHORI-321 Drosophila melanogaster g... 46 1.6 1
(AQ047213) RPCI11-35P12.TJ RPCI-11 Homo sapiens genomic clon... 46 1.6 1
(AQ007011) CIT-HSP-2282P8.TRB CIT-HSP Homo sapiens genomic c... 46 1.6 1
(AQ000320) CIT-HSP-2282P8.TR CIT-HSP Homo sapiens genomic cl... 46 1.6 1
(DY677045) TT1AQ89TH Tetrahymena thermophila EST library str... 46 1.6 1
(CX585150) TTE00030169 Amplicon Express - Conjugative Form T... 46 1.6 1
(CN516517) 4850.1 Tuber Skin Solanum tuberosum cDNA clone 48... 46 1.6 1
(BW413284) Ciona intestinalis cDNA, clone:cima817c24, 3'end,... 46 1.6 1
(R97826) yq60g02.s1 Soares fetal liver spleen 1NFLS Homo sap... 46 1.6 1
(FK223168) XABT225492.g1 Gateway compatible cien cDNA librar... 46 1.6 1
(FF576910) TTEEH26THB Tetrahymena thermophila conjugation cD... 46 1.6 1
(EV829434) TT1D283TV Tetrahymena thermophila SB210 cDNA libr... 46 1.6 1
(EV829433) TT1D283TH Tetrahymena thermophila SB210 cDNA libr... 46 1.6 1
(AM455567) Vitis vinifera, whole genome shotgun sequence, co... 42 1.6 2
(AC234252) Felis catus BAC clone FCAB-44H12 from chromosome ... 42 1.7 3
(AC012446) Homo sapiens BAC clone RP11-101A12 from 2, comple... 36 1.7 3
(AE014847) Plasmodium falciparum 3D7 chromosome 12, section ... 32 1.8 9
(AL928637) Zebrafish DNA sequence from clone CH211-227I6. 38 1.8 6
(AY232273) Dictyostelium discoideum putative protein Roco11 ... 36 1.9 3
(BA000018) Staphylococcus aureus subsp. aureus N315 DNA, com... 36 1.9 18
(AL355311) Human DNA sequence *** SEQUENCING CANCELLED *** f... 40 1.9 4
(AC174140) Bos taurus clone CH240-88G14, WORKING DRAFT SEQUE... 40 2.0 5
(AC019190) Homo sapiens chromosome 5 clone RP11-309K8, WORKI... 34 2.1 5
(CU407001) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 38 2.1 2
(CU207410) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 36 2.1 5
(EX751327) RR1BV72JQ RR1(CS) Raphanus raphanistrum subsp. ma... 40 2.1 2
(EX747037) RR1BV72TF RR1(CS) Raphanus raphanistrum subsp. ma... 40 2.1 2
(AC060821) Homo sapiens chromosome 4 clone RP11-771E3 map 4,... 34 2.1 4
(AC152694) Bos taurus clone CH240-8A10, WORKING DRAFT SEQUEN... 34 2.2 5
(CU469464) Candidatus Phytoplasma mali strain AT complete ch... 38 2.2 10
(FD548834) RR3EO25TF RR3(NY) Raphanus raphanistrum subsp. ra... 40 2.2 2
(EY898368) RR1DJ01TF RR1(CS) Raphanus raphanistrum subsp. ma... 40 2.2 2
(U10927) Staphylococcus aureus M type 1 capsular polysacchar... 32 2.2 5
(AC139112) Chlorocebus aethiops clone CH252-467C20, complete... 34 2.3 6
(AC140876) Homo sapiens chromosome 5 clone RP11-1282G5, WORK... 36 2.3 8
(AC146106) Pan troglodytes BAC clone RP43-5I17 from chromoso... 32 2.3 9
(AC096924) Rattus norvegicus clone CH230-3K7, *** SEQUENCING... 36 2.3 6
(CU459093) Zebrafish DNA sequence from clone CH73-100L22 in ... 38 2.3 4
(CR548612) Paramecium tetraurelia macronuclear largest chrom... 34 2.4 12
(AM433670) Vitis vinifera contig VV78X009704.3, whole genome... 36 2.4 3
(BX571856) Staphylococcus aureus subsp. aureus strain MRSA25... 34 2.4 20
(BA000017) Staphylococcus aureus subsp. aureus Mu50 DNA, com... 36 2.5 18
(AP009324) Staphylococcus aureus subsp. aureus Mu3 DNA, comp... 36 2.5 18
(AC185972) Pan troglodytes BAC clone CH251-639D5 from chromo... 42 2.6 5
(AC109957) Rattus norvegicus clone CH230-311O19, WORKING DRA... 38 2.6 3
(CP000033) Lactobacillus acidophilus NCFM, complete genome. 32 2.6 2
(AC144373) Felis catus clone RP86-72M21, WORKING DRAFT SEQUE... 34 2.7 5
(CS040416) Sequence 970 from Patent WO2005019258. 34 2.7 3
(CS031464) Sequence 970 from Patent WO2005016962. 34 2.7 3
(GN001775) Sequence 970 from Patent EP2014675. 34 2.7 3
(AC096129) Rattus norvegicus clone CH230-11D1, *** SEQUENCIN... 36 2.8 3
(AC150955) Bos taurus clone CH240-274J9, WORKING DRAFT SEQUE... 36 2.8 4
(CR450772) Zebrafish DNA sequence *** SEQUENCING CANCELLED *... 38 2.8 6
(DJ358581) METHODS AND NUCLEIC ACIDS FOR THE ANALYSIS OF GEN... 34 2.9 3
(CS114300) Sequence 1058 from Patent WO2005054517. 34 2.9 3
(AC104232) Homo sapiens chromosome 8, clone RP11-1D12, compl... 42 2.9 5
(CT827855) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 42 3.1 4
(EU514468) Drosophila ananassae kl-3 gamma dynein heavy chai... 36 3.1 2
(AL136978) Human DNA sequence *** SEQUENCING CANCELLED *** f... 38 3.1 5
(AC020693) Homo sapiens chromosome 6 clone RP11-574H19 map 6... 32 3.1 2
(AC161091) Saimiri boliviensis boliviensis clone CH254-21A5,... 32 3.1 7
(AL445433) Human DNA sequence from clone RP11-234N17 on chro... 32 3.1 2
(CR925677) Ehrlichia ruminantium str. Gardel, complete genome. 36 3.2 14
(BA000021) Wigglesworthia glossinidia endosymbiont of Glossi... 32 3.2 14
(CR522871) Desulfotalea psychrophila LSv54, large plasmid. 42 3.2 3
(AP006082) Lotus japonicus genomic DNA, chromosome 4, clone:... 34 3.2 2
(AL355359) Human DNA sequence *** SEQUENCING CANCELLED *** f... 40 3.2 5
(BX927371) Zebrafish DNA sequence from clone DKEY-1C17 in li... 38 3.2 5
(EK371813) 1095469419774 Global-Ocean-Sampling_GS-31-01-01-1... 38 3.2 2
(AC023376) Homo sapiens chromosome 8 clone RP11-687M23 map 8... 38 3.3 6
(DQ021446) Daktulosphaira vitifoliae mitochondrion, partial ... 32 3.3 5
(AC117176) Dictyostelium discoideum chromosome 2 map 5018074... 34 3.3 7
(AC225500) Medicago truncatula clone mth2-52p14, WORKING DRA... 36 3.3 6
(AZ692808) ENTLJ68TR Entamoeba histolytica Sheared DNA Entam... 42 3.3 2
(ER685446) SB_BBc163-D22.R SB_BBc Sorghum bicolor genomic 3'... 34 3.4 2
(AC169395) Macaca mulatta clone CH250-10M4, WORKING DRAFT SE... 34 3.4 5
(AM659513) Entamoeba moshkovskii FIC GSS, clone mosh090e10.q1k. 38 3.4 2
(EJ853626) 1093017905318 Global-Ocean-Sampling_GS-30-02-01-1... 42 3.4 2
(EK319649) 1095462424943 Global-Ocean-Sampling_GS-31-01-01-1... 36 3.4 2
(AE017245) Mycoplasma synoviae 53, complete genome. 36 3.5 12
(AP008934) Staphylococcus saprophyticus subsp. saprophyticus... 34 3.5 18
(AC128775) Rattus norvegicus clone CH230-429N19, WORKING DRA... 40 3.6 4
(AC079856) Homo sapiens BAC clone RP11-521B4 from 4, complet... 32 3.6 8
(AE002154) Ureaplasma parvum serovar 3 str. ATCC 700970 sect... 32 3.7 4
(ER486694) 1093015302806 Global-Ocean-Sampling_GS-35-01-01-1... 40 3.7 2
(AC161509) Mus musculus chromosome 7, clone RP23-53O17, comp... 34 3.7 6
(AC210563) Chlorocebus aethiops clone CH252-16N18, WORKING D... 34 3.8 5
(EK149342) 1095456041401 Global-Ocean-Sampling_GS-31-01-01-1... 38 3.8 2
(ER367274) 1093022069914 Global-Ocean-Sampling_GS-34-01-01-1... 40 3.8 2
(AP006442) Homo sapiens genomic DNA, chromosome 11 clone:CMB... 40 3.8 3
(AL109814) Plasmodium falciparum DNA *** SEQUENCING IN PROGR... 38 3.8 6
(AC026486) Homo sapiens clone RP11-24K7, WORKING DRAFT SEQUE... 32 3.8 6
(AC200266) Pongo abelii BAC clone CH276-335L13 from chromoso... 40 3.8 7
(FB571360) Sequence 227 from Patent EP1865317. 44 3.8 6
(FB571304) Sequence 171 from Patent EP1865317. 44 3.8 6
(AZ543963) ENTGG22TF Entamoeba histolytica Sheared DNA Entam... 30 3.9 3
(AC004744) Homo sapiens BAC clone GS1-465N13 from 7, complet... 36 3.9 4
(AZ681233) ENTLD45TF Entamoeba histolytica Sheared DNA Entam... 30 3.9 3
(AC023904) Homo sapiens chromosome 10 clone RP11-369L1, comp... 40 3.9 7
(AC097060) Homo sapiens chromosome 1 clone RP11-412H9, compl... 40 4.0 3
(CT956043) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 36 4.1 5
(CP000736) Staphylococcus aureus subsp. aureus JH1, complete... 36 4.1 17
(CP000703) Staphylococcus aureus subsp. aureus JH9, complete... 36 4.1 17
(AL354742) Human DNA sequence *** SEQUENCING CANCELLED *** f... 40 4.1 3
(AL137180) Human DNA sequence *** SEQUENCING CANCELLED *** f... 40 4.2 4
(AC171596) Bos taurus clone CH240-280A14, WORKING DRAFT SEQU... 36 4.2 7
(AC079078) Homo sapiens chromosome UNK clone RP11-44P12, ***... 40 4.2 3
(AI023665) ow67g05.x1 Soares_fetal_liver_spleen_1NFLS_S1 Hom... 34 4.3 2
(AC162082) Bos taurus clone CH240-110L19, WORKING DRAFT SEQU... 42 4.3 6
(AC190426) Pan troglodytes chromosome X clone CH251-156N9 ma... 40 4.3 4
(AC139831) Homo sapiens chromosome 5 clone RP11-770A9, WORKI... 40 4.3 4
(AC117391) Homo sapiens 3 BAC RP11-3J15 (Roswell Park Cancer... 38 4.4 5
(AC068330) Homo sapiens chromosome 8 clone RP11-347O13 map 8... 34 4.4 4
(AC214632) Populus trichocarpa clone POP076-H19, complete se... 34 4.4 4
(AC013262) Homo sapiens BAC clone RP11-89C12 from 2, complet... 36 4.4 4
(AC138710) Homo sapiens chromosome 17, clone RP11-822E23, co... 36 4.4 4
(AC073218) Homo sapiens BAC clone RP11-529E15 from 2, comple... 40 4.6 3
(AC079234) Homo sapiens chromosome 4 clone RP11-448I16, WORK... 34 4.6 5
(CP001205) Borrelia burgdorferi ZS7, complete genome. 34 4.6 14
(AC224840) Bos taurus clone CH240-475B20, WORKING DRAFT SEQU... 38 4.7 6
(AC027797) Homo sapiens chromosome 15 clone RP11-241D17 map ... 32 4.7 5
(CP000727) Clostridium botulinum A str. Hall, complete genome. 34 4.7 15
(CT797457) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 32 4.7 8
(AC224789) Bos taurus clone CH240-476H1, WORKING DRAFT SEQUE... 44 4.8 3
(AC026831) Homo sapiens clone RP11-73B8, WORKING DRAFT SEQUE... 34 4.9 5
(AC171747) Atelerix albiventris clone LB4-11E15, WORKING DRA... 40 4.9 4
(AC116977) Dictyostelium discoideum chromosome 2 map 5515173... 36 4.9 9
(AC098323) Rattus norvegicus clone CH230-1M4, *** SEQUENCING... 38 5.0 6
(AE014825) Plasmodium falciparum 3D7 chromosome 14 section 1... 36 5.1 8
(AC142546) Homo sapiens chromosome 5 clone RP13-620E14, WORK... 36 5.1 7
(AC222123) Bos taurus clone CH240-370J7, WORKING DRAFT SEQUE... 44 5.1 3
(AC136927) Homo sapiens chromosome 16 clone CTB-54H16, WORKI... 40 5.1 3
(AC199663) Nomascus leucogenys leucogenys clone CH271-10L1, ... 40 5.2 6
(AC012339) Homo sapiens chromosome 8, clone RP11-31K23, comp... 38 5.2 5
(AP004985) Lotus japonicus genomic DNA, chromosome 1, clone:... 44 5.3 4
(BX248110) Zebrafish DNA sequence from clone DKEY-122I21 in ... 40 5.3 3
(AC016415) Homo sapiens chromosome 14 clone RP11-10I10 map 1... 36 5.3 5
(FP016003) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 36 5.3 4
(AC185728) Bos taurus clone RP42-149C20, WORKING DRAFT SEQUE... 36 5.4 5
(AY945934) Homo sapiens solute carrier organic anion transpo... 38 5.4 2
(AC141590) Homo sapiens chromosome 5 clone RP11-1068D20, WOR... 36 5.5 8
(AB141092) Homo sapiens DNA, STS on chromosome 3, D3S0743i, ... 40 5.7 2
(FP236657) Brassica rapa subsp. pekinensis clone KBrB045C11,... 34 5.8 4
(CU062542) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 36 5.8 5
(CS741903) Sequence 9899 from Patent WO2005083127. 42 5.9 5
(AC130995) Rattus norvegicus clone CH230-165J24, *** SEQUENC... 38 5.9 5
(AC222959) Bos taurus clone CH240-434B16, WORKING DRAFT SEQU... 38 5.9 5
(AC186069) Canis familiaris chromosome 14, clone XX-134K3, c... 34 5.9 7
(BH139797) ENTNI78TF Entamoeba histolytica Sheared DNA Entam... 28 6.0 4
(AC007514) Homo sapiens chromosome 14 clone BACs 209A20 and ... 44 6.0 3
(CP000726) Clostridium botulinum A str. ATCC 19397, complete... 34 6.0 15
(AL162573) Human DNA sequence from clone RP11-275J18 on chro... 40 6.1 4
(AK130597) Homo sapiens cDNA FLJ27087 fis, clone SPL04043. 32 6.1 3
(AC157198) Bos taurus clone CH240-63J9, WORKING DRAFT SEQUEN... 42 6.1 5
(AC139370) Homo sapiens chromosome 17 clone RP13-637H8 map 1... 36 6.2 4
(AC012022) Homo sapiens 3 BAC RP11-117L15 (Roswell Park Canc... 36 6.2 4
(AC009936) Homo sapiens clone RP11-115A15, WORKING DRAFT SEQ... 42 6.2 4
(AC018680) Homo sapiens BAC clone RP11-384E2 from 4, complet... 40 6.3 3
(CT573492) Zebrafish DNA sequence from clone DKEY-176M14 in ... 44 6.3 1
(BX936420) Zebrafish DNA sequence from clone DKEY-7F16 in li... 44 6.3 1
(BX890597) Zebrafish DNA sequence from clone DKEY-65F8. 44 6.3 1
(BX088703) Zebrafish DNA sequence from clone CH211-241D14 in... 44 6.3 1
(BX005473) Zebrafish DNA sequence from clone DKEY-148P7 in l... 44 6.3 1
(BX000443) Zebrafish DNA sequence from clone DKEY-5K18 in li... 44 6.3 1
(AL935304) Zebrafish DNA sequence from clone DKEY-29F22 in l... 44 6.3 1
(AB370894) Odontesthes sp. Odsp-001 mitochondrial DNA, compl... 44 6.3 1
(BV538475) G591P637601RG9.T0 Clint Pan troglodytes verus STS... 44 6.3 1
(BV534044) G591P624379RG8.T0 Clint Pan troglodytes verus STS... 44 6.3 1
(BV526163) G591P605824RC12.T0 Clint Pan troglodytes verus ST... 44 6.3 1
(BV508800) qie47c12.g1 Clint Pan troglodytes verus STS genom... 44 6.3 1
(BV504939) qpr31b03.g1 Clint Pan troglodytes verus STS genom... 44 6.3 1
(AL691430) Mouse DNA sequence from clone RP23-206C1 on chrom... 44 6.3 1
(AC161538) Mus musculus 6 BAC RP23-1D15 (Roswell Park Cancer... 44 6.3 1
(AC153632) Mus musculus 6 BAC RP23-450O1 (Roswell Park Cance... 44 6.3 1
(AC129162) Rattus norvegicus 9 BAC CH230-108L13 (Children's ... 44 6.3 1
(BS000225) Pan troglodytes chromosome 22 clone:PTB-062A13, m... 44 6.3 1
(AC200676) Pongo abelii BAC clone CH276-308O15 from chromoso... 44 6.3 1
(AC160021) Pan troglodytes BAC clone CH251-564M21 from chrom... 44 6.3 1
(AP009641) Lotus japonicus genomic DNA, chromosome 1, clone:... 44 6.3 1
(AP004920) Lotus japonicus genomic DNA, chromosome 2, clone:... 44 6.3 1
(AM459992) Vitis vinifera contig VV78X036999.6, whole genome... 44 6.3 1
(AM441773) Vitis vinifera contig VV78X257662.3, whole genome... 44 6.3 1
(AM430072) Vitis vinifera contig VV78X101644.2, whole genome... 44 6.3 1
(AM426522) Vitis vinifera contig VV78X152111.7, whole genome... 44 6.3 1
(AC137703) Medicago truncatula chromosome 8 clone mth2-11d24... 44 6.3 1
(DI098382) XYLANASES, NUCLEIC ACIDS ENCODING THEM AND METHOD... 44 6.3 1
(DD391379) Method and nucleic acids for the improved treatme... 44 6.3 1
(DD147301) A method for examining secondary hyperparathyroid... 44 6.3 1
(CQ806635) Sequence 85 from Patent WO2004035803. 44 6.3 1
(EU212524) Armigeres subalbatus ASAP ID ACN-0183631 unknown ... 44 6.3 1
(AY601819) Homo sapiens fibroblast growth factor 1 (acidic) ... 44 6.3 1
(AP001011) Homo sapiens genomic DNA, chromosome 18 clone:RP1... 44 6.3 1
(AL589943) Human DNA sequence from clone RP11-44D23 on chrom... 44 6.3 1
(AL139148) Human DNA sequence from clone RP4-630J13 on chrom... 44 6.3 1
(AC110614) Homo sapiens BAC clone RP11-453D22 from 2, comple... 44 6.3 1
(AC108035) Homo sapiens BAC clone RP11-140P5 from 4, complet... 44 6.3 1
(AC064846) Homo sapiens BAC clone RP11-59C11 from 2, complet... 44 6.3 1
(AC011995) Homo sapiens BAC clone RP11-163G21 from 2, comple... 44 6.3 1
(AC010489) Homo sapiens chromosome 5 clone CTD-2332G20, comp... 44 6.3 1
(AC005370) Homo sapiens chromosome 5, BAC clone 193n11 (LBNL... 44 6.3 1
(AC139641) Rattus norvegicus clone CH230-195F7, *** SEQUENCI... 44 6.3 1
(AC132698) Rattus norvegicus clone CH230-53M7, *** SEQUENCIN... 44 6.3 1
(AC130111) Rattus norvegicus clone CH230-215N2, WORKING DRAF... 44 6.3 1
(AC128130) Rattus norvegicus clone CH230-268F21, *** SEQUENC... 44 6.3 1
(AC121739) Rattus norvegicus clone CH230-90O17, *** SEQUENCI... 44 6.3 1
(AC115390) Rattus norvegicus clone CH230-195M21, WORKING DRA... 44 6.3 1
(AC111205) Rattus norvegicus clone CH230-122D2, *** SEQUENCI... 44 6.3 1
(AC098604) Rattus norvegicus clone CH230-139G21, *** SEQUENC... 44 6.3 1
(AC097902) Rattus norvegicus clone CH230-153J10, *** SEQUENC... 44 6.3 1
(AC096247) Rattus norvegicus clone CH230-30J6, *** SEQUENCIN... 44 6.3 1
(AC094725) Rattus norvegicus clone CH230-5K4, *** SEQUENCING... 44 6.3 1
(FP085547) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 6.3 1
(AC083916) Mus musculus strain C57BL6/J chromosome 6 clone R... 44 6.3 1
(AC079932) Homo sapiens chromosome 3 clone RP11-527D19, WORK... 44 6.3 1
(CU468429) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 6.3 1
(CU462876) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 44 6.3 1
(AP010211) Lotus japonicus genomic DNA, clone: LjT28K11, TM1... 44 6.3 1
(AP010059) Lotus japonicus genomic DNA, clone: LjT05A08, TM0... 44 6.3 1
(AP010047) Lotus japonicus genomic DNA, clone: LjT04N09, TM0... 44 6.3 1
(AP007947) Lotus japonicus genomic DNA, chromosome 1, clone:... 44 6.3 1
(AP000898) Homo sapiens genomic DNA, chromosome 18p11.3 clon... 44 6.3 1
(AC223595) Bos taurus clone CH240-464P16, WORKING DRAFT SEQU... 44 6.3 1
(AC222655) Bos taurus clone CH240-443E24, WORKING DRAFT SEQU... 44 6.3 1
(AC216314) Tupaia belangeri clone CH275-489A12, WORKING DRAF... 44 6.3 1
(AC200378) Nomascus leucogenys leucogenys clone CH271-352K2,... 44 6.3 1
(AC197961) Cavia porcellus clone CH234-143O17, WORKING DRAFT... 44 6.3 1
(AC194665) Pan troglodytes chromosome 2 clone CH251-321I20, ... 44 6.3 1
(AC193289) Colobus guereza clone CH272-414L7, WORKING DRAFT ... 44 6.3 1
(AC189896) Cavia porcellus clone CH234-455M11, WORKING DRAFT... 44 6.3 1
(AC189838) Colobus guereza clone CH272-402F1, WORKING DRAFT ... 44 6.3 1
(AC183477) Dasypus novemcinctus clone VMRC5-135A12, WORKING ... 44 6.3 1
(AC182219) Bos taurus clone CH240-515C3, WORKING DRAFT SEQUE... 44 6.3 1
(AC179498) Strongylocentrotus purpuratus clone R3-1035J3, WO... 44 6.3 1
(AC176744) Strongylocentrotus purpuratus clone R3-3097F16, W... 44 6.3 1
(AC173917) Atelerix albiventris clone LB4-121F16, WORKING DR... 44 6.3 1
(AC170845) Bos taurus clone CH240-199A16, WORKING DRAFT SEQU... 44 6.3 1
(AC170269) Bos taurus clone CH240-306I18, WORKING DRAFT SEQU... 44 6.3 1
(AC168935) Bos taurus clone CH240-188M10, WORKING DRAFT SEQU... 44 6.3 1
(AC165751) Bos taurus clone CH240-159L1, WORKING DRAFT SEQUE... 44 6.3 1
(AC024683) Homo sapiens chromosome 14 clone RP11-177E17 map ... 44 6.3 1
(AC024557) Homo sapiens chromosome 18 clone RP11-152G13 map ... 44 6.3 1
(AC017056) Homo sapiens chromosome 2 clone RP11-341M11, WORK... 44 6.3 1
(AC016560) Homo sapiens chromosome 5 clone CTC-463E16, WORKI... 44 6.3 1
(AC007941) Homo sapiens chromosome 18 clone RP11-356L1 map 1... 44 6.3 1
(BH526951) BOGSX70TF BOGS Brassica oleracea genomic clone BO... 44 6.3 1
(BH497651) BOGYP31TR BOGY Brassica oleracea genomic clone BO... 44 6.3 1
(BH495613) BOGXW52TR BOGX Brassica oleracea genomic clone BO... 44 6.3 1
(BH481114) BOGYF71TF BOGY Brassica oleracea genomic clone BO... 44 6.3 1
(FH517823) CHO_OF4154xo10f1.ab1 CHO_OF4 Nicotiana tabacum ge... 44 6.3 1
(FH016135) CHO_OF446xo08r1.ab1 CHO_OF Nicotiana tabacum geno... 44 6.3 1
(FH016053) CHO_OF446xo08f2.ab1 CHO_OF Nicotiana tabacum geno... 44 6.3 1
(ER388232) 1094428735239 Global-Ocean-Sampling_GS-34-01-01-1... 44 6.3 1
(ER322099) 1092344184751 Global-Ocean-Sampling_GS-34-01-01-1... 44 6.3 1
(EK209577) 1095460093844 Global-Ocean-Sampling_GS-31-01-01-1... 44 6.3 1
(EJ748976) 1092963022123 Global-Ocean-Sampling_GS-30-02-01-1... 44 6.3 1
(EJ732861) 1092960194363 Global-Ocean-Sampling_GS-30-02-01-1... 44 6.3 1
(EJ562956) 1092959676714 Global-Ocean-Sampling_GS-29-01-01-1... 44 6.3 1
(EJ505024) 1095403680429 Global-Ocean-Sampling_GS-28-01-01-1... 44 6.3 1
(EJ398313) 1093012017911 Global-Ocean-Sampling_GS-28-01-01-1... 44 6.3 1
(EJ354790) 1092963626374 Global-Ocean-Sampling_GS-28-01-01-1... 44 6.3 1
(EJ344547) 1092963538562 Global-Ocean-Sampling_GS-28-01-01-1... 44 6.3 1
(EJ082031) 1095460050177 Global-Ocean-Sampling_GS-26-01-01-1... 44 6.3 1
(ED721069) GM_WBb0073I14.r GM_WBb Glycine max genomic clone ... 44 6.3 1
(ED699511) GM_WBb0040G13.f GM_WBb Glycine max genomic clone ... 44 6.3 1
(DX433381) BE1075_G24_R IASMA L1 HindIII BAC library Vitis v... 44 6.3 1
(CZ904971) gy39d06.x1.b.screen Bread wheat methylation filte... 44 6.3 1
(CZ519207) GMW2-40G13a.b1 GMW2 Glycine max genomic, genomic ... 44 6.3 1
(CZ175664) MIAA-15K14b.g1 Meloidogyne incognita BAC end sequ... 44 6.3 1

>(AU071797) Dictyostelium discoideum slug cDNA, clone SSC543.
Length = 240

Score = 476 bits (240), Expect = e-130
Identities = 240/240 (100%)
Strand = Plus / Plus


Query: 1 aaattgaattattcattgattagaaataatacatttaaaattttaaaaagaagaatgaca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aaattgaattattcattgattagaaataatacatttaaaattttaaaaagaagaatgaca 60


Query: 61 acagcaactacagcaacaattaaaattaatggtaatgatactccattaacaattattcca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 acagcaactacagcaacaattaaaattaatggtaatgatactccattaacaattattcca 120


Query: 121 aatgaaattagtttagaaacagttatgtctgcaccaaattttaataaatggataaagaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 aatgaaattagtttagaaacagttatgtctgcaccaaattttaataaatggataaagaaa 180


Query: 181 atggaattagagaaagaattaaaagtaaatagtatttcagttcaatcagttgatatgttt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 atggaattagagaaagaattaaaagtaaatagtatttcagttcaatcagttgatatgttt 240

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 102105510
Number of Hits to DB: 966,095,991
Number of extensions: 67101070
Number of successful extensions: 6778238
Number of sequences better than 10.0: 633
Length of query: 623
Length of database: 101,790,757,118
Length adjustment: 24
Effective length of query: 599
Effective length of database: 99,340,224,878
Effective search space: 59504794701922
Effective search space used: 59504794701922
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)

protein update 2009. 7.31
Homology vs Protein
Query= Contig-U04725-1 (Contig-U04725-1Q) /CSM_Contig/Contig-U04725-1Q.Seq.d
(623 letters)

Database: nrp_A
3,268,448 sequences; 1,061,185,681 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

AP008212_158(AP008212|pid:none) Oryza sativa (japonica cultivar-... 143 5e-33
AP000391_20(AP000391|pid:none) Oryza sativa Japonica Group genom... 143 5e-33
AM435789_2(AM435789|pid:none) Vitis vinifera contig VV78X050972.... 135 1e-30
AL049638_5(AL049638|pid:none) Arabidopsis thaliana DNA chromosom... 130 2e-29
BT065164_1(BT065164|pid:none) Zea mays full-length cDNA clone ZM... 130 3e-29
BT065604_1(BT065604|pid:none) Zea mays full-length cDNA clone ZM... 130 3e-29
AP007164_647(AP007164|pid:none) Aspergillus oryzae RIB40 genomic... 125 1e-27
AM889285_2517(AM889285|pid:none) Gluconacetobacter diazotrophicu... 98 2e-19
CP001189_748(CP001189|pid:none) Gluconacetobacter diazotrophicus... 94 4e-18
AC137510_11(AC137510|pid:none) Medicago truncatula clone mth2-8m... 77 3e-13
CP001656_2301(CP001656|pid:none) Paenibacillus sp. JDR-2, comple... 51 3e-05
CR954253_1634(CR954253|pid:none) Lactobacillus delbrueckii subsp... 48 3e-04
CP001010_708(CP001010|pid:none) Polynucleobacter necessarius sub... 48 3e-04
CP000655_1031(CP000655|pid:none) Polynucleobacter necessarius su... 46 0.001
AJ938182_1360(AJ938182|pid:none) Staphylococcus aureus RF122 com... 45 0.001
BX571856_1543(BX571856|pid:none) Staphylococcus aureus subsp. au... 45 0.002
AE009441_373(AE009441|pid:none) Pyrobaculum aerophilum str. IM2,... 45 0.002
AL939110_78(AL939110|pid:none) Streptomyces coelicolor A3(2) com... 44 0.003
AM180355_1821(AM180355|pid:none) Clostridium difficile 630 compl... 44 0.003
A97342(A97342) nudix (MutT) family hydrolase [imported] - Clostr... 44 0.005
CP001146_881(CP001146|pid:none) Dictyoglomus thermophilum H-6-12... 43 0.008
CP000716_540(CP000716|pid:none) Thermosipho melanesiensis BI429,... 43 0.008
BA000028_1851(BA000028|pid:none) Oceanobacillus iheyensis HTE831... 42 0.011
CP000010_1558(CP000010|pid:none) Burkholderia mallei ATCC 23344 ... 42 0.014
CP001078_1191(CP001078|pid:none) Clostridium botulinum E3 str. A... 42 0.014
CP000472_728(CP000472|pid:none) Shewanella piezotolerans WP3, co... 42 0.014
CP000086_1069(CP000086|pid:none) Burkholderia thailandensis E264... 42 0.019
AP009385_2169(AP009385|pid:none) Burkholderia multivorans ATCC 1... 41 0.024
AM167904_2425(AM167904|pid:none) Bordetella avium 197N complete ... 41 0.024
CP000127_2411(CP000127|pid:none) Nitrosococcus oceani ATCC 19707... 41 0.024
BX640428_179(BX640428|pid:none) Bordetella parapertussis strain ... 41 0.024
CP000614_2290(CP000614|pid:none) Burkholderia vietnamiensis G4 c... 41 0.024
CP000958_2238(CP000958|pid:none) Burkholderia cenocepacia MC0-3 ... 41 0.024
CP001251_987(CP001251|pid:none) Dictyoglomus turgidum DSM 6724, ... 41 0.024
(Q01976) RecName: Full=ADP-ribose pyrophosphatase; EC=3... 41 0.032
AP009493_5722(AP009493|pid:none) Streptomyces griseus subsp. gri... 41 0.032
AP011115_663(AP011115|pid:none) Rhodococcus opacus B4 DNA, compl... 41 0.032
CP000682_722(CP000682|pid:none) Metallosphaera sedula DSM 5348, ... 41 0.032
(O61902) RecName: Full=Putative nudix hydrolase 2; EC=3... 40 0.041
CP000721_2512(CP000721|pid:none) Clostridium beijerinckii NCIMB ... 40 0.054
CP000910_800(CP000910|pid:none) Renibacterium salmoninarum ATCC ... 40 0.054
BA000030_6511(BA000030|pid:none) Streptomyces avermitilis MA-468... 40 0.054
CP001185_791(CP001185|pid:none) Thermosipho africanus TCF52B, co... 40 0.054
CP001104_1409(CP001104|pid:none) Eubacterium eligens ATCC 27750,... 40 0.054
CP001056_1247(CP001056|pid:none) Clostridium botulinum B str. Ek... 40 0.054
CP000386_2726(CP000386|pid:none) Rubrobacter xylanophilus DSM 99... 40 0.071
CP000561_1318(CP000561|pid:none) Pyrobaculum calidifontis JCM 11... 40 0.071
AM747720_2325(AM747720|pid:none) Burkholderia cenocepacia J2315 ... 40 0.071
AM180355_1260(AM180355|pid:none) Clostridium difficile 630 compl... 40 0.071
CP000151_2373(CP000151|pid:none) Burkholderia sp. 383 chromosome... 40 0.071
CP000562_2199(CP000562|pid:none) Methanoculleus marisnigri JR1, ... 39 0.092
CU928175_687(CU928175|pid:none) Zygosaccharomyces rouxii strain ... 39 0.092
CP001185_1359(CP001185|pid:none) Thermosipho africanus TCF52B, c... 39 0.12
AY128667_1(AY128667|pid:none) Bacillus methanolicus methanol deh... 39 0.16
CP000267_1478(CP000267|pid:none) Rhodoferax ferrireducens T118, ... 38 0.21
CP001052_1320(CP001052|pid:none) Burkholderia phytofirmans PsJN ... 38 0.21
AM270054_8(AM270054|pid:none) Aspergillus niger contig An03c0130... 38 0.21
CP001322_2989(CP001322|pid:none) Desulfatibacillum alkenivorans ... 38 0.21
CP000386_2720(CP000386|pid:none) Rubrobacter xylanophilus DSM 99... 38 0.21
BA000037_584(BA000037|pid:none) Vibrio vulnificus YJ016 DNA, chr... 38 0.27
AE016795_580(AE016795|pid:none) Vibrio vulnificus CMCP6 chromoso... 38 0.27
AE015451_4852(AE015451|pid:none) Pseudomonas putida KT2440 compl... 38 0.27
CP000529_1426(CP000529|pid:none) Polaromonas naphthalenivorans C... 38 0.27
CP000660_799(CP000660|pid:none) Pyrobaculum arsenaticum DSM 1351... 38 0.27
CR382132_1083(CR382132|pid:none) Yarrowia lipolytica strain CLIB... 38 0.27
CP001329_543(CP001329|pid:none) Micromonas sp. RCC299 chromosome... 38 0.27
AP008957_3261(AP008957|pid:none) Rhodococcus erythropolis PR4 DN... 37 0.35
CT005272_379(CT005272|pid:none) Leishmania major strain Friedlin... 37 0.35
AE005673_3356(AE005673|pid:none) Caulobacter crescentus CB15, co... 37 0.35
CP001503_2444(CP001503|pid:none) Burkholderia glumae BGR1 chromo... 37 0.46
AY221025_2(AY221025|pid:none) Vibrio vulnificus outer membrane p... 37 0.60
CP000868_1903(CP000868|pid:none) Burkholderia multivorans ATCC 1... 37 0.60
AP009049_1135(AP009049|pid:none) Clostridium kluyveri NBRC 12016... 37 0.60
CP000850_1861(CP000850|pid:none) Salinispora arenicola CNS-205, ... 37 0.60
CR382122_375(CR382122|pid:none) Kluyveromyces lactis strain NRRL... 37 0.60
CP000633_1155(CP000633|pid:none) Agrobacterium vitis S4 chromoso... 37 0.60
CP000560_2087(CP000560|pid:none) Bacillus amyloliquefaciens FZB4... 37 0.60
CP000246_2019(CP000246|pid:none) Clostridium perfringens ATCC 13... 36 0.78
CP000474_1586(CP000474|pid:none) Arthrobacter aurescens TC1, com... 36 0.78
CP000312_1743(CP000312|pid:none) Clostridium perfringens SM101, ... 36 0.78
BA000016_1810(BA000016|pid:none) Clostridium perfringens str. 13... 36 0.78
AE014184_98(AE014184|pid:none) Tropheryma whipplei str. Twist, c... 36 0.78
AP007164_648(AP007164|pid:none) Aspergillus oryzae RIB40 genomic... 36 0.78
CP000250_4107(CP000250|pid:none) Rhodopseudomonas palustris HaA2... 36 0.78
CR954210_78(CR954210|pid:none) Ostreococcus tauri strain OTTH059... 36 0.78
CP001600_1626(CP001600|pid:none) Edwardsiella ictaluri 93-146, c... 36 1.0
CP000116_232(CP000116|pid:none) Thiobacillus denitrificans ATCC ... 36 1.0
CP000422_1120(CP000422|pid:none) Pediococcus pentosaceus ATCC 25... 36 1.0
CP000312_1825(CP000312|pid:none) Clostridium perfringens SM101, ... 36 1.0
CP000713_982(CP000713|pid:none) Psychrobacter sp. PRwf-1, comple... 36 1.0
CP000285_2538(CP000285|pid:none) Chromohalobacter salexigens DSM... 35 1.3
CP000246_2103(CP000246|pid:none) Clostridium perfringens ATCC 13... 35 1.3
CP000812_1973(CP000812|pid:none) Thermotoga lettingae TMO, compl... 35 1.3
AB3081(AB3081) conserved hypothetical protein Atu4270 [imported]... 35 1.3
AY596297_1911(AY596297|pid:none) Haloarcula marismortui ATCC 430... 35 1.3
AM920437_1611(AM920437|pid:none) Penicillium chrysogenum Wiscons... 35 1.3
BA000016_1898(BA000016|pid:none) Clostridium perfringens str. 13... 35 1.3
CP000903_3824(CP000903|pid:none) Bacillus weihenstephanensis KBA... 35 1.3
AE008257_11(AE008257|pid:none) Agrobacterium tumefaciens str. C5... 35 1.3
CP000359_1794(CP000359|pid:none) Deinococcus geothermalis DSM 11... 35 1.3
CP000724_2431(CP000724|pid:none) Alkaliphilus metalliredigens QY... 35 1.7
CP000284_2042(CP000284|pid:none) Methylobacillus flagellatus KT,... 35 1.7
CP000614_1349(CP000614|pid:none) Burkholderia vietnamiensis G4 c... 35 1.7
CP001025_1302(CP001025|pid:none) Burkholderia ambifaria MC40-6 c... 35 1.7
AE016879_3977(AE016879|pid:none) Bacillus anthracis str. Ames, c... 35 1.7
AM263198_1991(AM263198|pid:none) Listeria welshimeri serovar 6b ... 35 1.7
CP000089_960(CP000089|pid:none) Dechloromonas aromatica RCB, com... 35 1.7
AM711867_2002(AM711867|pid:none) Clavibacter michiganensis subsp... 35 2.3
CU633900_138(CU633900|pid:none) Podospora anserina genomic DNA c... 35 2.3
CP000923_1515(CP000923|pid:none) Thermoanaerobacter sp. X514, co... 35 2.3
CP000859_1899(CP000859|pid:none) Desulfococcus oleovorans Hxd3, ... 35 2.3
(P54570) RecName: Full=ADP-ribose pyrophosphatase; EC=3... 35 2.3
CP001365_92(CP001365|pid:none) Halorubrum lacusprofundi ATCC 492... 35 2.3
CP000821_773(CP000821|pid:none) Shewanella sediminis HAW-EB3, co... 35 2.3
CP000462_3024(CP000462|pid:none) Aeromonas hydrophila subsp. hyd... 35 2.3
CR555306_2753(CR555306|pid:none) Azoarcus sp. EbN1 complete geno... 35 2.3
CP001472_1548(CP001472|pid:none) Acidobacterium capsulatum ATCC ... 35 2.3
BT057146_1(BT057146|pid:none) Salmo salar clone ssal-evd-521-345... 34 3.0
AP009044_1510(AP009044|pid:none) Corynebacterium glutamicum R DN... 34 3.0
AL646052_2046(AL646052|pid:none) Ralstonia solanacearum GMI1000 ... 34 3.0
AM920437_273(AM920437|pid:none) Penicillium chrysogenum Wisconsi... 34 3.0
AE1320(AE1320) hypothetical protein lmo1965 [imported] - Listeri... 34 3.0
CP001114_1948(CP001114|pid:none) Deinococcus deserti VCD115, com... 34 3.0
CP000817_1656(CP000817|pid:none) Lysinibacillus sphaericus C3-41... 34 3.0
CP000702_1549(CP000702|pid:none) Thermotoga petrophila RKU-1, co... 34 3.0
CP001644_1844(CP001644|pid:none) Ralstonia pickettii 12D chromos... 34 3.0
AM849034_1240(AM849034|pid:none) Clavibacter michiganensis subsp... 34 3.0
CP001114_810(CP001114|pid:none) Deinococcus deserti VCD115, comp... 34 3.0
CP001124_3517(CP001124|pid:none) Geobacter bemidjiensis Bem, com... 34 3.0
BA000036_1418(BA000036|pid:none) Corynebacterium glutamicum ATCC... 34 3.0
(Q9P791) RecName: Full=Uncharacterized Nudix hydrolase P35G2.12;... 34 3.0
AX064847_1(AX064847|pid:none) Sequence 1129 from Patent WO0100843. 34 3.0
AM494972_389(AM494972|pid:none) Leishmania braziliensis chromoso... 34 3.9
(Q8K9C1) RecName: Full=Putative metalloprotease BUsg_427; ... 34 3.9
CP000949_4682(CP000949|pid:none) Pseudomonas putida W619, comple... 34 3.9
BA000031_426(BA000031|pid:none) Vibrio parahaemolyticus RIMD 221... 34 3.9
CU207211_1713(CU207211|pid:none) Herminiimonas arsenicoxydans ch... 34 3.9
AP008230_2325(AP008230|pid:none) Desulfitobacterium hafniense Y5... 34 3.9
CP000151_1361(CP000151|pid:none) Burkholderia sp. 383 chromosome... 34 3.9
AE016853_4850(AE016853|pid:none) Pseudomonas syringae pv. tomato... 34 3.9
CU694416_4(CU694416|pid:none) Ralstonia solanacearum strain MolK... 34 3.9
(Q4A7W9) RecName: Full=Asparaginyl-tRNA synthetase; EC=... 34 3.9
CP001616_1367(CP001616|pid:none) Tolumonas auensis DSM 9187, com... 33 5.1
(Q600N9) RecName: Full=Asparaginyl-tRNA synthetase; EC=... 33 5.1
AM920428_1460(AM920428|pid:none) Penicillium chrysogenum Wiscons... 33 5.1
CP001618_2332(CP001618|pid:none) Beutenbergia cavernae DSM 12333... 33 5.1
AE017283_1375(AE017283|pid:none) Propionibacterium acnes KPA1712... 33 5.1
AM286415_1385(AM286415|pid:none) Yersinia enterocolitica subsp. ... 33 5.1
AE1692(AE1692) hypothetical protein homolog lin2079 [imported] -... 33 5.1
(Q44600) RecName: Full=Probable protease sohB; EC=3.4.2... 33 5.1
AM181176_483(AM181176|pid:none) Pseudomonas fluorescens SBW25 co... 33 5.1
AE016877_4843(AE016877|pid:none) Bacillus cereus ATCC 14579, com... 33 5.1
CP000568_667(CP000568|pid:none) Clostridium thermocellum ATCC 27... 33 5.1
BA000004_1524(BA000004|pid:none) Bacillus halodurans C-125 DNA, ... 33 5.1
CR382132_651(CR382132|pid:none) Yarrowia lipolytica strain CLIB1... 33 5.1
CP001029_814(CP001029|pid:none) Methylobacterium populi BJ001, c... 33 6.6
CP000472_1777(CP000472|pid:none) Shewanella piezotolerans WP3, c... 33 6.6
AP007255_1066(AP007255|pid:none) Magnetospirillum magneticum AMB... 33 6.6
CP000612_1870(CP000612|pid:none) Desulfotomaculum reducens MI-1,... 33 6.6
CP001337_778(CP001337|pid:none) Chloroflexus aggregans DSM 9485,... 33 6.6
CP000667_1898(CP000667|pid:none) Salinispora tropica CNB-440, co... 33 6.6
CP001001_672(CP001001|pid:none) Methylobacterium radiotolerans J... 33 6.6
CP000555_1418(CP000555|pid:none) Methylibium petroleiphilum PM1,... 33 8.6
CP001638_2029(CP001638|pid:none) Geobacillus sp. WCH70, complete... 33 8.6
AE015929_2316(AE015929|pid:none) Staphylococcus epidermidis ATCC... 33 8.6
CP000594_104(CP000594|pid:none) Ostreococcus lucimarinus CCE9901... 33 8.6
CP000958_1376(CP000958|pid:none) Burkholderia cenocepacia MC0-3 ... 33 8.6
CP000511_1490(CP000511|pid:none) Mycobacterium vanbaalenii PYR-1... 33 8.6
AM910994_47(AM910994|pid:none) Plasmodium knowlesi strain H chro... 33 8.6
CU633895_580(CU633895|pid:none) Podospora anserina genomic DNA c... 33 8.6
AM270224_12(AM270224|pid:none) Aspergillus niger contig An11c007... 33 8.6
BA000035_2116(BA000035|pid:none) Corynebacterium efficiens YS-31... 33 8.6
CP000458_1402(CP000458|pid:none) Burkholderia cenocepacia HI2424... 33 8.6
CR380952_366(CR380952|pid:none) Candida glabrata strain CBS138 c... 33 8.6
AM439876_1(AM439876|pid:none) Vitis vinifera contig VV78X229579.... 33 8.6

>AP008212_158(AP008212|pid:none) Oryza sativa (japonica
cultivar-group) genomic DNA, chromosome 6.
Length = 285

Score = 143 bits (360), Expect = 5e-33
Identities = 80/195 (41%), Positives = 119/195 (61%), Gaps = 11/195 (5%)
Frame = +1

Query: 70 TATIKINGNDTPLTIIP----NEISLETVMSAPNFNKWIKKMELEK------ELKVNSIS 219
+ + + G P+ ++ E + + + F +W+K ++ EK L + I
Sbjct: 12 STAVAVPGAGAPVRVVAAPGLTEADFTSAVESSLFRQWLKNLQEEKGVLTYGRLNLRQIL 71

Query: 220 VQSVDMFGKNVGFLKFKADVVTVKEGRVVPGIIFCRGGSVAILVILKSKETGKEYSVLTV 399
+Q VDMFGK VGF+KFKAD++ + +PGI+F RG +VA+L++L+SK G+ Y+VLT
Sbjct: 72 IQGVDMFGKRVGFVKFKADIIDEETKAKIPGIVFARGPAVAVLILLESK--GQTYAVLTE 129

Query: 400 QTRVPVASFQYSEIPAGMLDG-SGHFVGVAAKELKEETGLEVSEDKLIDLTKLAYGTEVD 576
Q RVPV F E+PAGMLD G FVG A +E++EETG++++ + +IDLT L
Sbjct: 130 QVRVPVGKF-ILELPAGMLDDEKGDFVGTAVREVEEETGIKLNLEDMIDLTALLNPDTGC 188

Query: 577 GVYPSPGGCDEFIRL 621
+ PSPGGCDE I L
Sbjct: 189 RMLPSPGGCDEEIGL 203

Lambda K H
0.316 0.135 0.377

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3268448
Number of Hits to DB: 790,249,433
Number of extensions: 13448932
Number of successful extensions: 51321
Number of sequences better than 10.0: 175
Number of HSP's gapped: 51240
Number of HSP's successfully gapped: 175
Length of query: 207
Length of database: 1,061,185,681
Length adjustment: 123
Effective length of query: 84
Effective length of database: 659,166,577
Effective search space: 55369992468
Effective search space used: 55369992468
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 31 (16.5 bits)

PSORT

psg: 0.58 gvh: 0.37 alm: 0.30 top: 0.47 tms: 0.07 mit: 0.49 mip: 0.04
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 1.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

28.0 %: mitochondrial
16.0 %: nuclear
16.0 %: endoplasmic reticulum
16.0 %: cytoplasmic
8.0 %: Golgi
4.0 %: peroxisomal
4.0 %: vacuolar
4.0 %: plasma membrane
4.0 %: vesicles of secretory system

>> prediction for Contig-U04725-1 is mit

VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 1
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0