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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U04716-1
Contig ID Contig-U04716-1
Contig update 2001. 8.29
Contig sequence 
>Contig-U04716-1 (Contig-U04716-1Q) /CSM_Contig/Contig-U04716-1Q.Seq.d
AAATAAATAAAATAAATAATTTTTGTTGAATTGGATAATGCGATTGTTGG
TTGTATCCTTGAGTGTTGTTATTAATAAAAAAAAAAAAGAAATATAAAAT
AAAATAAAGCATAACAAATTTTTTTTTTTTTTTGTTTAAAAAAAAAAAAA
A
Gap no gap
Contig length 151
Chromosome number (1..6, M) 1
Chromosome length 4919822
Start point 4497664
End point 4497801
Strand (PLUS/MINUS) PLUS
Number of clones 1
Number of EST 1
Link to clone list U04716
List of clone(s) 

est1=SSC484E,1,152
Translated Amino Acid sequence 
nk*nk*FLLNWIMRLLVVSLSVVINKKKKEI*nkikhnkfffffv*kkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
k*ik*iifveldnaivgcileccy**kkkrnik*nka*qiffffclkkkk


Frame B:
nk*nk*FLLNWIMRLLVVSLSVVINKKKKEI*nkikhnkfffffv*kkkk


Frame C:
inkinnfc*ig*cdcwlyp*vlllikkkkkykik*sitnfffflfkkkk
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U04716-1 (Contig-U04716-1Q)
/CSM_Contig/Contig-U04716-1Q.Seq.d
         (151 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U04716-1 (Contig-U04716-1Q) /CSM_Contig/Conti...   163  6e-41
Contig-U11079-1 (Contig-U11079-1Q) /CSM_Contig/Conti...    50  6e-07
Contig-U13839-1 (Contig-U13839-1Q) /CSM_Contig/Conti...    40  6e-04
Contig-U12293-1 (Contig-U12293-1Q) /CSM_Contig/Conti...    40  6e-04
Contig-U12274-1 (Contig-U12274-1Q) /CSM_Contig/Conti...    40  6e-04
Contig-U11803-1 (Contig-U11803-1Q) /CSM_Contig/Conti...    40  6e-04
Contig-U11727-1 (Contig-U11727-1Q) /CSM_Contig/Conti...    40  6e-04
Contig-U06741-1 (Contig-U06741-1Q) /CSM_Contig/Conti...    40  6e-04
Contig-U04560-1 (Contig-U04560-1Q) /CSM_Contig/Conti...    40  6e-04
Contig-U01650-1 (Contig-U01650-1Q) /CSM_Contig/Conti...    40  6e-04

>Contig-U04716-1 (Contig-U04716-1Q) /CSM_Contig/Contig-U04716-1Q.Seq.d
          Length = 151

 Score =  163 bits (82), Expect = 6e-41
 Identities = 106/118 (89%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaataaataaaataaataatttttgttgaattggataatgcgattgttggttgtatcctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   aaataaataaaataaataatttttgttgaattggataatgcgattgttggttgtatcctt 60

                                                                     
Query: 61  gagtgttgttattaatnnnnnnnnnnnngaaatataaaataaaataaagcataacaaa 118
           ||||||||||||||||            ||||||||||||||||||||||||||||||
Sbjct: 61  gagtgttgttattaataaaaaaaaaaaagaaatataaaataaaataaagcataacaaa 118


>Contig-U11079-1 (Contig-U11079-1Q) /CSM_Contig/Contig-U11079-1Q.Seq.d
          Length = 1520

 Score = 50.1 bits (25), Expect = 6e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 15 aataatttttgttgaattggataat 39
          |||||||||||||||||||||||||
Sbjct: 43 aataatttttgttgaattggataat 67


>Contig-U13839-1 (Contig-U13839-1Q) /CSM_Contig/Contig-U13839-1Q.Seq.d
          Length = 1974

 Score = 40.1 bits (20), Expect = 6e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 1    aaataaataaaataaataat 20
            ||||||||||||||||||||
Sbjct: 1884 aaataaataaaataaataat 1903


 Score = 26.3 bits (13), Expect = 9.4
 Identities = 13/13 (100%)
 Strand = Plus / Minus

                         
Query: 25   gttgaattggata 37
            |||||||||||||
Sbjct: 1063 gttgaattggata 1051


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 13,049
Number of Sequences: 6905
Number of extensions: 13049
Number of successful extensions: 6484
Number of sequences better than 10.0: 1548
length of query: 151
length of database: 5,674,871
effective HSP length: 15
effective length of query: 136
effective length of database: 5,571,296
effective search space: 757696256
effective search space used: 757696256
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 13 (26.3 bits)
dna update 2009. 6.28
Homology vs DNA 
Query= Contig-U04716-1 (Contig-U04716-1Q) /CSM_Contig/Contig-U04716-1Q.Seq.d
         (151 letters)

Database: ddbj_A
           102,105,510 sequences; 101,790,757,118 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(C84201) Dictyostelium discoideum slug cDNA, clone SSC484.        151   9e-45  2
(AC133571) Medicago truncatula clone mth2-10h12, complete se...    56   4e-07  2
(CU019603) M.truncatula DNA sequence from clone MTH2-139F11 ...    56   5e-07  2
(FP089537) Zebrafish DNA sequence from clone CH73-205E12 in ...    42   4e-04  2
(BV429027) S237P6215FG6.T0 PortugueseWaterDog Canis familiar...    38   6e-04  2
(CE020668) tigr-gss-dog-17000321997063 Dog Library Canis lup...    38   6e-04  2
(CE453403) tigr-gss-dog-17000319378253 Dog Library Canis lup...    38   7e-04  2
(CE195316) tigr-gss-dog-17000371496646 Dog Library Canis lup...    38   7e-04  2
(BX649363) Zebrafish DNA sequence from clone CH211-13C3 in l...    42   7e-04  2
(EI797730) CHORI518027P16TR BAC library from the breast cell...    40   7e-04  2
(BV666791) S217P62074FF6.T0 Noemie Pan troglodytes troglodyt...    38   8e-04  2
(FI300446) AdH1032-CPY2-J17TF AdH1 Arachis duranensis genomi...    40   9e-04  2
(BV462201) qcm72h10.b1 Clint Pan troglodytes verus STS genom...    38   9e-04  2
(BV498117) S217P6053RB4.T0 Noemie Pan troglodytes troglodyte...    38   0.001  2
(DU877707) 278932 Tomato HindIII BAC Library Solanum lycoper...    42   0.001  2
(AX345890) Sequence 961 from Patent WO0200928.                     54   0.001  1
(CE793076) tigr-gss-dog-17000317481565 Dog Library Canis lup...    38   0.002  2
(BF247118) 601854573F1 NIH_MGC_57 Homo sapiens cDNA clone IM...    38   0.003  2
(CE002543) tigr-gss-dog-17000320891746 Dog Library Canis lup...    38   0.003  2
(AM630657) Entamoeba dispar GSS, clone dispar57f01.p1k.            40   0.003  2
(AC115682) Dictyostelium discoideum chromosome 2 map 4101105...    36   0.004  3
(BX908747) Zebrafish DNA sequence from clone DKEY-58J15 in l...    52   0.006  1
(BX569778) Zebrafish DNA sequence from clone DKEY-21J8 in li...    52   0.006  1
(AC162582) Bos taurus clone CH240-116K13, WORKING DRAFT SEQU...    52   0.006  1
(CU914181) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    52   0.006  1
(CU862073) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    52   0.006  1
(CT573424) Zebrafish DNA sequence *** SEQUENCING CANCELLED *...    52   0.006  1
(BX553581) Glossina morsitans morsitans (Tseatse fly) EST fr...    42   0.006  2
(CU856612) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    38   0.007  3
(FJ357803) Apis mellifera anatoliaca haplotype C1f tRNA-Leu ...    40   0.008  2
(DE175786) Bombyx mori genomic DNA, Fosmid clone:RO0326-M08_F.     38   0.009  2
(CU856058) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    42   0.009  2
(AC190219) Pan troglodytes BAC clone CH251-377C16 from chrom...    48   0.009  2
(CR457458) Zebrafish DNA sequence from clone BUSM1-85A12 in ...    44   0.009  2
(FM977834) Glossina morsitans morsitans EST, clone GMsg107b0...    42   0.009  2
(AC197206) Pan troglodytes BAC clone CH251-322I3 from chromo...    48   0.010  2
(CE568327) tigr-gss-dog-17000327548497 Dog Library Canis lup...    38   0.010  2
(BG777499) 602664838F1 NIH_MGC_60 Homo sapiens cDNA clone IM...    38   0.011  2
(AF027390) Homo sapiens 7q telomere, complete sequence.            48   0.011  2
(BX230802) Danio rerio genomic clone DKEY-53M1, genomic surv...    42   0.011  2
(ES189745) 233396_2144_3878 Arabidopsis ovule high throughpu...    38   0.012  2
(BV246690) S234P6113FA10.T0 EnglishShepherd Canis familiaris...    38   0.012  2
(AZ550845) ENTFF51TF Entamoeba histolytica Sheared DNA Entam...    36   0.013  2
(BM163502) EST566025 PyBS Plasmodium yoelii yoelii cDNA clon...    38   0.013  2
(AC146333) Medicago truncatula clone mth2-8d3, complete sequ...    40   0.014  4
(AI110338) TENU3308 T. cruzi epimastigote normalized cDNA Li...    38   0.015  2
(AC180525) Strongylocentrotus purpuratus clone R3-3099D24, W...    38   0.015  3
(AM441678) Vitis vinifera contig VV78X062252.3, whole genome...    40   0.015  2
(EL981603) 015977_0289_1739 Arabidopsis ovule high throughpu...    38   0.016  2
(BH152479) ENTQJ78TR Entamoeba histolytica Sheared DNA Entam...    38   0.016  3
(CE512955) tigr-gss-dog-17000311573315 Dog Library Canis lup...    38   0.016  2
(AB150450) Homo sapiens DNA, STS on chromosome 1, D1S1400i, ...    38   0.016  2
(DJ447667) Method for analysing genome using microsatellite ...    38   0.016  2
(CE510943) tigr-gss-dog-17000311523427 Dog Library Canis lup...    38   0.017  2
(EL982427) 016878_0252_3426 Arabidopsis ovule high throughpu...    38   0.018  2
(M78031) EST01618 Hippocampus, Stratagene (cat. #936205) Hom...    38   0.018  2
(BQ082580) K-EST0139779 S14K402 Homo sapiens cDNA clone S14K...    38   0.020  2
(AM480093) Vitis vinifera contig VV78X117694.6, whole genome...    38   0.021  2
(EL155625) EB3RODY01E644S 8-day Arabidopsis seedlings, aeria...    38   0.022  2
(AC116956) Dictyostelium discoideum chromosome 2 map 1418423...    50   0.022  1
(AC202322) Medicago truncatula clone mth2-160j6, WORKING DRA...    50   0.022  1
(AC171747) Atelerix albiventris clone LB4-11E15, WORKING DRA...    50   0.022  1
(BJ332970) Dictyostelium discoideum cDNA clone:dda41c04, 5' ...    50   0.022  1
(BJ328964) Dictyostelium discoideum cDNA clone:dda30d08, 5' ...    50   0.022  1
(DX975082) CHORI105-22F22.TJ CHORI105.pTARBAC1.3 Trypanosoma...    38   0.022  2
(AB150001) Homo sapiens DNA, STS on chromosome 11, D11S0784i...    38   0.023  2
(DJ465155) Method for analysing genome using microsatellite ...    38   0.023  2
(AA135806) zn93b08.s1 Stratagene lung carcinoma 937218 Homo ...    38   0.023  2
(AB146162) Homo sapiens DNA, STS on chromosome 10, D10S0583i...    38   0.024  2
(DJ464358) Method for analysing genome using microsatellite ...    38   0.024  2
(CE466606) tigr-gss-dog-17000363550588 Dog Library Canis lup...    38   0.024  2
(ES193206) 241468_2081_2419 Arabidopsis ovule high throughpu...    38   0.024  2
(CE431026) tigr-gss-dog-17000362958777 Dog Library Canis lup...    38   0.024  2
(CE227005) tigr-gss-dog-17000333238635 Dog Library Canis lup...    38   0.025  2
(CL350296) RPCI44_310F7.r RPCI-44 Sus scrofa genomic clone R...    38   0.025  2
(AC192479) Pan troglodytes BAC clone CH251-428P15 from chrom...    38   0.026  4
(CE213272) tigr-gss-dog-17000372782889 Dog Library Canis lup...    38   0.027  2
(BV253704) S234P62FG6.T0 EnglishShepherd Canis familiaris ST...    38   0.027  2
(CE664081) tigr-gss-dog-17000329144411 Dog Library Canis lup...    40   0.029  2
(CE528165) tigr-gss-dog-17000365806552 Dog Library Canis lup...    38   0.029  2
(CE483677) tigr-gss-dog-17000365123779 Dog Library Canis lup...    38   0.029  2
(AC170724) Atelerix albiventris clone LB4-441C4, WORKING DRA...    40   0.030  2
(CE807491) tigr-gss-dog-17000331496308 Dog Library Canis lup...    38   0.031  2
(CB833117) USDA-FP_100667 Adult Alate Brown Citrus Aphid Tox...    36   0.031  2
(BV287491) S232P6528FG7.T0 Beagle Canis familiaris STS genom...    38   0.031  2
(CE477821) tigr-gss-dog-17000364648389 Dog Library Canis lup...    38   0.031  2
(AM641431) Entamoeba dispar GSS, clone dispar82e02.q1k.            36   0.031  2
(DT540642) DR010021B10C03 Canine normalized retinal cDNA lib...    38   0.032  2
(CE368557) tigr-gss-dog-17000362035363 Dog Library Canis lup...    40   0.032  2
(BV314064) S236P6389FH7.T0 AlaskanMalamute Canis familiaris ...    38   0.032  2
(BM160488) EST563011 PyBS Plasmodium yoelii yoelii cDNA clon...    38   0.033  2
(FJ477997) Apis mellifera syriaca haplotype O3 COI-COII inte...    40   0.033  2
(CW344705) 104_847_11488096_116_36200_056 Sorghum methylatio...    40   0.033  2
(AL953682) Arabidopsis thaliana T-DNA flanking sequence GK-3...    38   0.033  2
(CE284875) tigr-gss-dog-17000333793531 Dog Library Canis lup...    38   0.033  2
(CE205087) tigr-gss-dog-17000372596111 Dog Library Canis lup...    38   0.034  2
(AC197887) Macaca mulatta clone CH250-337A10, WORKING DRAFT ...    48   0.034  2
(CE733596) tigr-gss-dog-17000315432205 Dog Library Canis lup...    38   0.034  2
(BV431612) S237P656RA1.T0 PortugueseWaterDog Canis familiari...    38   0.035  2
(CE739677) tigr-gss-dog-17000315736459 Dog Library Canis lup...    38   0.035  2
(BV226276) S233P6102FD9.T0 LabradorRetriever Canis familiari...    38   0.035  2
(BV333322) S230P6512FE5.T0 Rottweiler Canis familiaris STS g...    38   0.035  2
(CE051769) tigr-gss-dog-17000358181109 Dog Library Canis lup...    38   0.035  2
(AC005507) Plasmodium falciparum chromosome 12 clone PFYACB8...    40   0.035  5
(BV346896) S230P6454FD1.T0 Rottweiler Canis familiaris STS g...    38   0.035  2
(CE577834) tigr-gss-dog-17000366215269 Dog Library Canis lup...    38   0.035  2
(DX560317) GH_MBb0030P17f GH_MBb Gossypium hirsutum genomic ...    38   0.035  3
(AZ978082) 2M0254P09F Mouse 10kb plasmid UUGC2M library Mus ...    38   0.036  2
(CE027798) tigr-gss-dog-17000344816044 Dog Library Canis lup...    38   0.036  2
(CE217850) tigr-gss-dog-17000326875759 Dog Library Canis lup...    38   0.036  2
(BJ444315) Dictyostelium discoideum cDNA clone:ddv56a01, 3' ...    38   0.036  2
(CE137757) tigr-gss-dog-17000371209865 Dog Library Canis lup...    40   0.037  2
(CW344706) 104_847_11488096_148_36199_056 Sorghum methylatio...    40   0.038  2
(CE697410) tigr-gss-dog-17000368688989 Dog Library Canis lup...    38   0.038  2
(AC151184) Bos taurus clone CH240-159A21, WORKING DRAFT SEQU...    40   0.038  2
(BV627435) S216P62227FF5.T0 Masuku Pan troglodytes troglodyt...    38   0.039  2
(ER573213) 1093015801368 Global-Ocean-Sampling_GS-36-01-01-2...    38   0.039  2
(AC122036) Mus musculus BAC clone RP24-420C18 from chromosom...    40   0.039  2
(CE251710) tigr-gss-dog-17000335912123 Dog Library Canis lup...    40   0.039  2
(CE078893) tigr-gss-dog-17000324481460 Dog Library Canis lup...    38   0.039  2
(BH964546) odh57d05.b1 B.oleracea002 Brassica oleracea genom...    40   0.039  2
(CZ894915) 204_1_12063636_3_37681_074 Pine methylation filte...    40   0.040  2
(CE757776) tigr-gss-dog-17000369684325 Dog Library Canis lup...    38   0.040  2
(CE274429) tigr-gss-dog-17000333596356 Dog Library Canis lup...    38   0.040  2
(CO394691) AGENCOURT_27272477 NIH_ZGC_4 Danio rerio cDNA clo...    38   0.040  2
(FH857048) OSB_176004xh20f1.ab1 OSB_176 Nicotiana tabacum ge...    36   0.041  2
(CT573216) Medicago truncatula chromosome 5 clone mte1-79f1,...    38   0.042  4
(AQ742688) HS_5386_B1_E10_SP6 RPCI-11 Human Male BAC Library...    38   0.042  2
(BV737754) pRRL2:Newb:20080411:105544 USMARC Pig Breed SNP D...    38   0.042  2
(AL928603) Human DNA sequence from clone RP13-253K9 on chrom...    38   0.044  2
(FJ477996) Apis mellifera syriaca haplotype O2 COI-COII inte...    40   0.044  2
(FG087549) CMRC-FF-IH0-ach-b-17-0-CMRC.r1 Ceratitis capitata...    38   0.044  2
(CT172378) Sus scrofa genomic clone PigE-134G11, genomic sur...    38   0.044  2
(FH857264) OSB_176006xe21f1.ab1 OSB_176 Nicotiana tabacum ge...    36   0.044  2
(FH857292) OSB_176006xo13f1.ab1 OSB_176 Nicotiana tabacum ge...    36   0.045  2
(CR759965) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    38   0.045  2
(AM633068) Entamoeba dispar GSS, clone dispar97f01.q1k.            36   0.045  2
(CE605318) tigr-gss-dog-17000313129828 Dog Library Canis lup...    36   0.045  2
(DU980177) KBrH066N02R KBrH (HindIII) BAC library Brassica r...    40   0.046  2
(FH857392) OSB_176006xb08f1.ab1 OSB_176 Nicotiana tabacum ge...    36   0.046  2
(EJ573415) 1092960072697 Global-Ocean-Sampling_GS-29-01-01-1...    40   0.046  2
(CK361976) AGENCOURT_17176928 NIH_ZGC_4 Danio rerio cDNA clo...    38   0.047  2
(CE502703) tigr-gss-dog-17000310734256 Dog Library Canis lup...    38   0.047  2
(CU856470) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    40   0.048  4
(FH857548) OSB_176007xk16f1.ab1 OSB_176 Nicotiana tabacum ge...    36   0.048  2
(CE714016) tigr-gss-dog-17000369497481 Dog Library Canis lup...    38   0.049  2
(CL457184) ZMMBBb0481H18f ZMMBBb (HindIII) Zea mays subsp. m...    38   0.050  2
(EI967112) SB_BBc72-F10.R SB_BBc Sorghum bicolor genomic 3',...    40   0.050  2
(CE003242) tigr-gss-dog-17000320740364 Dog Library Canis lup...    38   0.051  2
(AU072242) Dictyostelium discoideum slug cDNA, clone SSD817.       38   0.052  2
(AU072241) Dictyostelium discoideum slug cDNA, clone SSD816.       38   0.052  2
(AU073005) Dictyostelium discoideum slug cDNA, clone SSF693.       36   0.052  2
(DX452646) MAMA507TR MA4 Musa acuminata genomic clone MA4-2A...    32   0.054  3
(EY709546) CS00-C3-701-003-E02-CT.F Sweet orange fruit, deve...    38   0.057  2
(CE282865) tigr-gss-dog-17000333773133 Dog Library Canis lup...    38   0.060  2
(AM430094) Vitis vinifera contig VV78X208744.7, whole genome...    40   0.061  2
(AC073594) Homo sapiens 12 BAC RP11-972K6 (Roswell Park Canc...    46   0.061  2
(CE619926) tigr-gss-dog-17000327786735 Dog Library Canis lup...    38   0.068  2
(DX525731) GH_MBb0085C05r GH_MBb Gossypium hirsutum genomic ...    38   0.069  2
(DE424579) Bombyx mori genomic DNA, Fosmid clone:GBMFno6_n23...    40   0.069  2
(CE513481) tigr-gss-dog-17000327411702 Dog Library Canis lup...    38   0.069  2
(DE588716) Bombyx mori genomic DNA, Fosmid clone:GBMFno241_m...    40   0.069  2
(DE600717) Bombyx mori genomic DNA, Fosmid clone:GBMFno260_d...    40   0.070  2
(AC016856) Homo sapiens clone RP11-12J3, WORKING DRAFT SEQUE...    48   0.074  3
(AC026251) Homo sapiens chromosome 14 clone RP11-333K19 map ...    40   0.077  5
(CE475306) tigr-gss-dog-17000364181288 Dog Library Canis lup...    38   0.078  2
(AL732577) Zebrafish DNA sequence from clone RP71-1M10 in li...    44   0.078  2
(CE651646) tigr-gss-dog-17000367909130 Dog Library Canis lup...    38   0.079  2
(AB073996) Apis mellifera Atk mRNA for preprotachykinin, com...    46   0.079  2
(BX649347) Zebrafish DNA sequence from clone DKEY-14K9 in li...    38   0.080  2
(AC116986) Dictyostelium discoideum chromosome 2 map 2234041...    38   0.082  3
(CU280645) Zebrafish DNA sequence from clone DKEY-172H23.          38   0.083  4
(CE652871) tigr-gss-dog-17000367955751 Dog Library Canis lup...    38   0.083  2
(CE406958) tigr-gss-dog-17000335644879 Dog Library Canis lup...    38   0.083  2
(CE106352) tigr-gss-dog-17000371164081 Dog Library Canis lup...    38   0.083  2
(AM425377) Vitis vinifera contig VV78X032994.14, whole genom...    34   0.083  3
(BV889714) pRRL2:Newb:20080411:269283 USMARC Pig Breed SNP D...    36   0.083  2
(CT170244) Sus scrofa genomic clone CH242-84G16, genomic sur...    38   0.086  2
(AC232963) Tupaia belangeri clone CH275-308J10, WORKING DRAF...    38   0.086  3
(AA865508) oh30a12.s1 NCI_CGAP_Kid6 Homo sapiens cDNA clone ...    38   0.087  2
(CU467620) Zebrafish DNA sequence from clone CH211-174E12.         48   0.087  1
(BX322606) Zebrafish DNA sequence from clone DKEY-40F12.           48   0.087  1
(BX005055) Zebrafish DNA sequence from clone CH211-188N23 in...    48   0.087  1
(BX005178) Mouse DNA sequence from clone RP23-413G6 on chrom...    48   0.087  1
(AL672228) Mouse DNA sequence from clone RP24-133C15 on chro...    48   0.087  1
(AC154882) Mus musculus chromosome 3, clone RP24-187P10, com...    48   0.087  1
(AC137583) Mus musculus chromosome 13, clone RP23-140F24, co...    48   0.087  1
(AC124980) Mus musculus chromosome 13, clone RP24-133J11, co...    48   0.087  1
(AC204737) Pan troglodytes BAC clone CH251-387E2 from chromo...    48   0.087  1
(CU915820) Medicago truncatula chromosome 5 clone mth2-108e1...    48   0.087  1
(AP008217) Oryza sativa (japonica cultivar-group) genomic DN...    48   0.087  1
(AC137064) Oryza sativa Japonica Group chromosome 11 clone O...    48   0.087  1
(EA701407) Sequence 80286 from patent US 7365185.                  48   0.087  1
(EA333142) Sequence 5634 from patent US 7306913.                   48   0.087  1
(DL469765) Oncofetal Fibronectin as a Marker for Disease and...    48   0.087  1
(CS489786) Sequence 37 from Patent WO2006026020.                   48   0.087  1
(CP000208) Drosophila melanogaster genomic scaffold 21100002...    48   0.087  1
(AP003484) Homo sapiens genomic DNA, chromosome 11q, clone:R...    48   0.087  1
(AC012462) Homo sapiens BAC clone RP11-566P21 from 2, comple...    48   0.087  1
(AC006476) Homo sapiens PAC clone RP4-764O12 from 7, complet...    48   0.087  1
(AC162577) Bos taurus clone CH240-119O8, WORKING DRAFT SEQUE...    48   0.087  1
(AC146818) Medicago truncatula clone mth2-172p22, WORKING DR...    48   0.087  1
(AC118512) Rattus norvegicus clone CH230-298H24, *** SEQUENC...    48   0.087  1
(AC116270) Rattus norvegicus clone CH230-355F16, *** SEQUENC...    48   0.087  1
(AC111503) Rattus norvegicus clone CH230-131F15, *** SEQUENC...    48   0.087  1
(AC099166) Rattus norvegicus clone CH230-53P1, WORKING DRAFT...    48   0.087  1
(AC096017) Rattus norvegicus clone CH230-32A7, WORKING DRAFT...    48   0.087  1
(FP102219) Medicago truncatula chromosome 5 clone mte1-46g2,...    48   0.087  1
(FP017206) Medicago truncatula chromosome 5 clone mth4-64j13...    48   0.087  1
(EU500866) Cucumis sativus clone CS_SBa_194J07, *** SEQUENCI...    48   0.087  1
(CU914767) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    48   0.087  1
(AC040925) Homo sapiens chromosome 11 clone RP11-734C14 map ...    48   0.087  1
(AC217752) Tupaia belangeri clone CH275-20A13, WORKING DRAFT...    48   0.087  1
(AQ156623) nbxb0008M19f CUGI Rice BAC Library Oryza sativa J...    48   0.087  1
(DX561879) GH_MBb0043K02r GH_MBb Gossypium hirsutum genomic ...    48   0.087  1
(CG957625) MBEHJ88TF mth2 Medicago truncatula genomic clone ...    48   0.087  1
(CE583254) tigr-gss-dog-17000366296582 Dog Library Canis lup...    48   0.087  1
(BX982653) Forward strand read from insert in 5'HPRT inserti...    48   0.087  1
(BX972806) Forward strand read from insert in 5'HPRT inserti...    48   0.087  1
(BM998831) UI-H-DI0-avm-l-20-0-UI.s1 NCI_CGAP_DI0 Homo sapie...    48   0.087  1
(BB131515) Mus musculus 16 days neonate cerebellum cDNA, RIK...    48   0.087  1
(CZ478369) e00486-5prime Exelixis piggyBac RB insertions Dro...    38   0.088  2
(AC157016) Mus musculus 10 BAC RP24-505M19 (Roswell Park Can...    42   0.088  3
(AA253997) va10e01.r1 Soares mouse lymph node NbMLN Mus musc...    38   0.091  2
(CE377347) tigr-gss-dog-17000362242057 Dog Library Canis lup...    38   0.093  2
(AB147013) Homo sapiens DNA, STS on chromosome 2, D2S1418i, ...    38   0.093  2
(DJ451832) Method for analysing genome using microsatellite ...    38   0.093  2
(AM453666) Vitis vinifera contig VV78X181238.4, whole genome...    36   0.094  2
(AC159164) Atelerix albiventris clone LB4-453G7, WORKING DRA...    36   0.095  3
(AC124381) Mus musculus BAC clone RP24-406E24 from chromosom...    44   0.095  3
(CE207220) tigr-gss-dog-17000372666608 Dog Library Canis lup...    38   0.096  2
(AM779832) Piratuba scaffi mitochondrial partial 12S rRNA ge...    36   0.097  2
(DH187500) Oryzias latipes Fosmid clone:GOLWFno471_c24, forw...    38   0.097  2
(CE577575) tigr-gss-dog-17000366213487 Dog Library Canis lup...    38   0.097  2
(BI895609) EtESTea86h07.y1 Eimeria M5-6 Merozoite stage subt...    38   0.097  2
(FB509320) Sequence 915 from Patent EP1961827.                     32   0.098  3
(FB509084) Sequence 679 from Patent EP1961827.                     32   0.098  3
(DL200064) EPIGENETIC METHODS AND NUCLEIC ACIDS FOR THE DETE...    32   0.098  3
(DL199828) EPIGENETIC METHODS AND NUCLEIC ACIDS FOR THE DETE...    32   0.098  3
(CS250618) Sequence 162 from Patent WO2005123945.                  32   0.098  3
(CS250536) Sequence 80 from Patent WO2005123945.                   32   0.098  3
(AM779831) Piratuba scaffi mitochondrial partial 12S rRNA ge...    36   0.100  2
(AB136558) Homo sapiens DNA, STS on chromosome 4, D4S0147i, ...    38   0.10   2
(DJ454166) Method for analysing genome using microsatellite ...    38   0.10   2
(CU861537) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    40   0.10   3
(CE108764) tigr-gss-dog-17000371186014 Dog Library Canis lup...    36   0.10   2
(DE466818) Bombyx mori genomic DNA, Fosmid clone:GBMFno65_j1...    38   0.10   2
(CT633294) Danio rerio EST, clone ZF_mu_61h22 3'.                  38   0.10   2
(DC228005) Plasmodium berghei strain ANKA cDNA clone:SG01082...    38   0.11   2
(AU086857) Plasmodium falciparum 3D7 cDNA clone from Sugano ...    38   0.11   2
(BP485933) Rattus norvegicus mRNA, clone:RI02704, 3' end, ex...    38   0.11   2
(AC159443) Trypanosoma brucei chromosome 5 clone RPCI93-30H1...    44   0.11   2
(AC170713) Atelerix albiventris clone LB4-267F15, WORKING DR...    40   0.11   2
(CE748292) tigr-gss-dog-17000369578252 Dog Library Canis lup...    38   0.11   2
(CT633295) Danio rerio EST, clone ZF_mu_61h22 3'.                  38   0.11   2
(BE925761) RC3-BN0034-250800-112-a12 BN0034 Homo sapiens cDN...    36   0.11   2
(CT717336) Danio rerio EST, clone ZF_mu_240n17 3'.                 38   0.11   2
(AC196345) Atelerix albiventris clone LB4-320O7, WORKING DRA...    38   0.11   2
(AC130236) Rattus norvegicus clone CH230-77G7, *** SEQUENCIN...    42   0.11   4
(AC166762) Bos taurus clone CH240-68P12, WORKING DRAFT SEQUE...    38   0.11   3
(CE542343) tigr-gss-dog-17000366046034 Dog Library Canis lup...    38   0.11   2
(CE180847) tigr-gss-dog-17000326773822 Dog Library Canis lup...    38   0.11   2
(CL363850) RPCI44_392O20.f RPCI-44 Sus scrofa genomic clone ...    38   0.11   2
(CE223628) tigr-gss-dog-17000326864335 Dog Library Canis lup...    38   0.11   2
(AC197289) Myotis lucifugus clone CH235-176D16, WORKING DRAF...    38   0.11   2
(AC191752) Pan troglodytes BAC clone CH251-435I2 from chromo...    46   0.11   2
(CE430908) tigr-gss-dog-17000362954891 Dog Library Canis lup...    38   0.11   2
(CE038952) tigr-gss-dog-17000349744589 Dog Library Canis lup...    38   0.11   2
(AC154206) Mus musculus BAC clone RP24-104P20 from 14, compl...    38   0.12   2
(AC149376) Phakopsora pachyrhizi clone JGIAFNA-5A2, complete...    40   0.12   2
(DD010736) Diagnosis of known genetic Parameters within the ...    40   0.12   3
(BV385081) S244P6369FB11.T0 AlaskaGrayWolf Canis lupus STS g...    38   0.12   2
(CU076061) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    38   0.12   2
(AM438293) Vitis vinifera contig VV78X126803.3, whole genome...    38   0.12   2
(CE819657) tigr-gss-dog-17000318537595 Dog Library Canis lup...    38   0.12   2
(CT179007) Sus scrofa genomic clone CH242-54K23, genomic sur...    38   0.12   2
(CE834137) tigr-gss-dog-17000332327738 Dog Library Canis lup...    38   0.12   2
(CE602189) tigr-gss-dog-17000366679683 Dog Library Canis lup...    38   0.12   2
(CE529175) tigr-gss-dog-17000365856161 Dog Library Canis lup...    38   0.12   2
(BV414065) S229P6495RC5.T0 GermanShepherd Canis familiaris S...    38   0.12   2
(CE644429) tigr-gss-dog-17000366896160 Dog Library Canis lup...    38   0.12   2
(AC196672) Macaca mulatta clone CH250-309H6, WORKING DRAFT S...    38   0.12   2
(AC217863) Gorilla gorilla gorilla clone CH255-536K17, WORKI...    38   0.12   2
(CE059010) tigr-gss-dog-17000322529578 Dog Library Canis lup...    38   0.12   2
(CE560991) tigr-gss-dog-17000327490645 Dog Library Canis lup...    38   0.12   2
(FI569156) G18969-5prime GenExel P-element insertion flankin...    38   0.12   2
(CE749157) tigr-gss-dog-17000369586935 Dog Library Canis lup...    38   0.12   2
(CE342672) tigr-gss-dog-17000334101494 Dog Library Canis lup...    38   0.12   2
(BV373623) S231P6406RC11.T0 BedlingtonTerrier Canis familiar...    38   0.12   2
(CL373586) RPCI44_457D12.f RPCI-44 Sus scrofa genomic clone ...    38   0.12   2
(CE634104) tigr-gss-dog-17000366734506 Dog Library Canis lup...    38   0.12   2
(CE780816) tigr-gss-dog-17000317082424 Dog Library Canis lup...    38   0.13   2
(CE113602) tigr-gss-dog-17000324912985 Dog Library Canis lup...    38   0.13   2
(CE353825) tigr-gss-dog-17000361459143 Dog Library Canis lup...    38   0.13   2
(CE461540) tigr-gss-dog-17000326993754 Dog Library Canis lup...    38   0.13   2
(BV192360) sqnm174258 Human DNA (Sequenom) Homo sapiens STS ...    38   0.13   2
(BV186375) sqnm150891 Human DNA (Sequenom) Homo sapiens STS ...    38   0.13   2
(GC866976) Sequence 182221 from patent US 6812339.                 38   0.13   2
(GC837757) Sequence 153002 from patent US 6812339.                 38   0.13   2
(AC146055) Pan troglodytes BAC clone RP43-80G9 from chromoso...    38   0.13   2
(AC160409) Mus musculus 10 BAC RP23-184O11 (Roswell Park Can...    42   0.13   3
(BV267742) S235P6159RA6.T0 ItalianGreyhound Canis familiaris...    38   0.13   2
(CE785540) tigr-gss-dog-17000330842524 Dog Library Canis lup...    38   0.13   2
(AC020999) Homo sapiens clone RP11-29K14, WORKING DRAFT SEQU...    38   0.13   4
(BV330724) S241P632FG4.T0 IndiaGrayWolf Canis lupus STS geno...    38   0.13   2
(AC201609) Strongylocentrotus purpuratus clone R3-5N23, WORK...    38   0.13   2
(DC202225) Plasmodium berghei strain ANKA cDNA clone:MG00116...    38   0.13   2
(BV379130) S245P644FD8.T0 SpanishGrayWolf Canis lupus STS ge...    38   0.13   2
(CE328423) tigr-gss-dog-17000333958259 Dog Library Canis lup...    38   0.13   2
(CE213827) tigr-gss-dog-17000372792908 Dog Library Canis lup...    38   0.13   2
(CE097113) tigr-gss-dog-17000371075803 Dog Library Canis lup...    38   0.13   2
(AC011759) Drosophila melanogaster strain y chromosome X clo...    40   0.13   2
(AL483305) T. brucei sheared genomic DNA clone 257h02, forwa...    44   0.13   2
(BJ381279) Dictyostelium discoideum cDNA clone:ddc41c01, 3' ...    42   0.13   2
(AZ971516) 2M0245J05F Mouse 10kb plasmid UUGC2M library Mus ...    38   0.13   2
(BV431707) S237P6458FA8.T0 PortugueseWaterDog Canis familiar...    38   0.13   2
(BV253230) S234P6369FC10.T0 EnglishShepherd Canis familiaris...    38   0.13   2
(DX461099) Cpl02788 Papaya Genomic DNA BAC Library Carica pa...    38   0.13   2
(CE616440) tigr-gss-dog-17000313564381 Dog Library Canis lup...    36   0.13   2
(CE437757) tigr-gss-dog-17000335889118 Dog Library Canis lup...    38   0.13   2
(BV437326) S237P6229FG2.T0 PortugueseWaterDog Canis familiar...    38   0.13   2
(CE358139) tigr-gss-dog-17000361435483 Dog Library Canis lup...    38   0.13   2
(C94528) Dictyostelium discoideum slug cDNA, clone SSL165.         38   0.13   2
(CE741237) tigr-gss-dog-17000330337108 Dog Library Canis lup...    38   0.13   2
(CE276675) tigr-gss-dog-17000333670399 Dog Library Canis lup...    38   0.13   2
(AZ638742) 1M0498L17R Mouse 10kb plasmid UUGC1M library Mus ...    38   0.13   2
(CE543134) tigr-gss-dog-17000366060641 Dog Library Canis lup...    38   0.13   2
(BV323796) S236P6290FF10.T0 AlaskanMalamute Canis familiaris...    36   0.13   2
(AC159644) Mus musculus BAC clone RP23-358A18 from chromosom...    40   0.13   2
(BV242779) S234P6132RB1.T0 EnglishShepherd Canis familiaris ...    38   0.14   2
(CE598405) tigr-gss-dog-17000366616992 Dog Library Canis lup...    38   0.14   2
(BV330878) S241P6105FH6.T0 IndiaGrayWolf Canis lupus STS gen...    38   0.14   2
(CE032316) tigr-gss-dog-17000347938550 Dog Library Canis lup...    38   0.14   2
(AC160423) Bos taurus clone CH240-88P6, WORKING DRAFT SEQUEN...    46   0.14   2
(CE848940) tigr-gss-dog-17000332977830 Dog Library Canis lup...    38   0.14   2
(CE753929) tigr-gss-dog-17000369640310 Dog Library Canis lup...    38   0.14   2
(BV432826) S237P6430RB9.T0 PortugueseWaterDog Canis familiar...    36   0.14   2
(CE474272) tigr-gss-dog-17000364138701 Dog Library Canis lup...    38   0.14   2
(CE049107) tigr-gss-dog-17000357559473 Dog Library Canis lup...    38   0.14   2
(CE742564) tigr-gss-dog-17000330381292 Dog Library Canis lup...    38   0.14   2
(CE086085) tigr-gss-dog-17000359022977 Dog Library Canis lup...    38   0.14   2
(CT363397) Sus scrofa genomic clone CH242-419B24, genomic su...    38   0.14   2
(AQ115493) RPCI11-57K4.TK.1 RPCI-11 Homo sapiens genomic clo...    38   0.14   2
(CE293593) tigr-gss-dog-17000333882299 Dog Library Canis lup...    38   0.14   2
(BV258521) S235P6441FG5.T0 ItalianGreyhound Canis familiaris...    38   0.14   2
(BH330845) CH230-14J6.TV CHORI-230 Segment 1 Rattus norvegic...    38   0.14   2
(AF357080) Tricholoma pardinum strain KMS278 12S ribosomal R...    38   0.14   2
(DW259184) UI-S-GG1-aaz-f-08-0-UI.s1 UI-S-GG1 Euprymna scolo...    38   0.14   2
(AA550526) 1685m3 gmbPfHB3.1, G. Roman Reddy Plasmodium falc...    38   0.14   2
(DX542288) GH_MBb0079J12r GH_MBb Gossypium hirsutum genomic ...    38   0.14   2
(CE507663) tigr-gss-dog-17000327372349 Dog Library Canis lup...    38   0.14   2
(CE419479) tigr-gss-dog-17000362723891 Dog Library Canis lup...    38   0.14   2
(DU246383) 1098574266917 CHORI-243 Ovis aries genomic clone ...    38   0.14   2
(CE360164) tigr-gss-dog-17000361492261 Dog Library Canis lup...    38   0.14   2
(BX548071) Zebrafish DNA sequence from clone DKEY-25L23 in l...    40   0.14   3
(CU972370) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    40   0.14   4
(CE300528) tigr-gss-dog-17000360041202 Dog Library Canis lup...    38   0.14   2
(CE816348) tigr-gss-dog-17000331877911 Dog Library Canis lup...    38   0.14   2
(CU267526) Equus caballus GSS, BAC clone CH241-421D5, T7 end...    38   0.14   2
(DC228284) Plasmodium berghei strain ANKA cDNA clone:SG01170...    38   0.14   2
(CE159795) tigr-gss-dog-17000371413578 Dog Library Canis lup...    38   0.14   2
(CE012787) tigr-gss-dog-17000321053928 Dog Library Canis lup...    38   0.14   2
(EX811745) CBNA2552.rev CBNA Phycomyces blakesleeanus NRRL15...    38   0.14   2
(CE099766) tigr-gss-dog-17000371100102 Dog Library Canis lup...    38   0.14   2
(CE457347) tigr-gss-dog-17000320481938 Dog Library Canis lup...    38   0.14   2
(CE348882) tigr-gss-dog-17000334157944 Dog Library Canis lup...    38   0.15   2
(CE735321) tigr-gss-dog-17000315451519 Dog Library Canis lup...    38   0.15   2
(AC137537) Canis lupus familiaris clone RP81-347M3, WORKING ...    38   0.15   2
(ER876577) MUGQ_CH252P266A14Sp6_CN550_063 CHORI-252 Vervet M...    38   0.15   2
(CE514177) tigr-gss-dog-17000327399479 Dog Library Canis lup...    38   0.15   2
(CE372068) tigr-gss-dog-17000362169225 Dog Library Canis lup...    38   0.15   2
(BV067221) S212P60364FF11.T0 CZECHII/Ei Mus musculus STS gen...    36   0.15   2
(ET173462) MUGQ_CH252P376J13Sp6_CP709_055 CHORI-252 Vervet M...    36   0.15   2
(AG075421) Pan troglodytes DNA, clone: PTB-068F03.F.               38   0.15   2
(FP236457) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    38   0.15   3
(CE354251) tigr-gss-dog-17000361473887 Dog Library Canis lup...    38   0.15   2
(BV322296) S236P6451FE12.T0 AlaskanMalamute Canis familiaris...    38   0.15   2
(CE121435) tigr-gss-dog-17000325913137 Dog Library Canis lup...    38   0.15   2
(BX571719) Zebrafish DNA sequence from clone DKEY-183C2 in l...    38   0.15   3
(CE842878) tigr-gss-dog-17000332688681 Dog Library Canis lup...    36   0.15   2
(CE775183) tigr-gss-dog-17000330628674 Dog Library Canis lup...    38   0.15   2
(BV626239) S217P60907RF2.T0 Noemie Pan troglodytes troglodyt...    38   0.15   2
(CE561889) tigr-gss-dog-17000327499458 Dog Library Canis lup...    38   0.15   2
(CE722204) tigr-gss-dog-17000329674723 Dog Library Canis lup...    38   0.15   2
(CT710157) Danio rerio EST, clone ZF_mu_206k02 5'.                 38   0.15   2
(CT474491) Sus scrofa genomic clone CH242-472B8, genomic sur...    38   0.15   2
(CE845524) tigr-gss-dog-17000332730725 Dog Library Canis lup...    38   0.15   2
(BH461493) BOHAR27TR BOHA Brassica oleracea genomic clone BO...    38   0.15   2
(EB598508) AGENCOURT_55024315 D. mojavensis EST Drosophila m...    38   0.15   2
(CE524751) tigr-gss-dog-17000365740413 Dog Library Canis lup...    40   0.15   2
(CE423942) tigr-gss-dog-17000362780020 Dog Library Canis lup...    40   0.16   2
(BV022874) S212P60120FH12.T0 CZECHII/Ei Mus musculus STS gen...    38   0.16   2
(FI210212) CccaBa053-L8TR CccABa Cajanus cajan genomic clone...    36   0.16   2
(AM445243) Vitis vinifera contig VV78X260659.9, whole genome...    42   0.16   3
(CE700475) tigr-gss-dog-17000368876352 Dog Library Canis lup...    36   0.16   2
(BV374827) S231P6454FF11.T0 BedlingtonTerrier Canis familiar...    38   0.16   2
(AC131139) Rattus norvegicus clone CH230-75F12, WORKING DRAF...    42   0.16   2
(AZ909880) RPCI-24-163D6.TJ RPCI-24 Mus musculus genomic clo...    38   0.16   2
(CE283955) tigr-gss-dog-17000333782968 Dog Library Canis lup...    38   0.16   2
(CT445702) Sus scrofa genomic clone CH242-503L16, genomic su...    38   0.16   2
(BH319205) CH230-31A7.TV CHORI-230 Segment 1 Rattus norvegic...    38   0.16   2
(BV541750) G591P55937FF4.T0 Clint Pan troglodytes verus STS ...    38   0.16   2
(ED265758) AUAC-aay66f11.b1 Ascaris suum whole genome shotgu...    38   0.16   2
(CT528385) A BAC library has been constructed from cultivar ...    38   0.16   2
(ET070412) QM0AAA4AD03FM1 CCL1 Citrus clementina genomic clo...    38   0.16   2
(CT059804) Sus scrofa genomic clone PigE-58E3, genomic surve...    38   0.17   2
(BX193397) Danio rerio genomic clone DKEY-197P22, genomic su...    40   0.17   2
(BV528167) G591P610331RF2.T0 Clint Pan troglodytes verus STS...    38   0.17   2
(DT232209) JGI_CAAT5805.rev CAAT Pimephales promelas brain 7...    38   0.17   2
(BZ432219) BONPO51TF BO_1.6_2_KB_tot Brassica oleracea genom...    38   0.17   2
(CW973768) AIAA-aaa65c11.g1 Ancylostoma caninum whole genome...    38   0.17   2
(CT059825) Sus scrofa genomic clone PigE-58G3, genomic surve...    38   0.17   2
(BV441120) S237P619RD12.T0 PortugueseWaterDog Canis familiar...    38   0.17   2
(CU651599) M.truncatula DNA sequence from clone MTH2-116D19 ...    42   0.17   3
(BJ415840) Dictyostelium discoideum cDNA clone:ddv23m21, 5' ...    36   0.17   2
(ES153917) 182405_2083_1690 Arabidopsis ovule high throughpu...    38   0.17   2
(BH034134) RPCI-24-240E15.TJ RPCI-24 Mus musculus genomic cl...    36   0.18   2
(CE057574) tigr-gss-dog-17000322450731 Dog Library Canis lup...    36   0.18   2
(CZ236858) AIAA-aae65a07.b1 Ancylostoma caninum whole genome...    38   0.18   2
(CZ970815) 170475 Tomato MboI BAC Library Solanum lycopersic...    34   0.18   3
(AM626103) Entamoeba dispar GSS, clone dispar123f01.q1k.           36   0.18   2
(AC127784) Rattus norvegicus clone CH230-131B6, WORKING DRAF...    38   0.18   2
(AU266055) Dictyostelium discoideum vegetative cDNA clone:VS...    38   0.18   2
(EJ407509) 1093012107050 Global-Ocean-Sampling_GS-28-01-01-1...    44   0.18   2
(CT338488) Sus scrofa genomic clone CH242-527A2, genomic sur...    38   0.18   2
(BX677675) Zebrafish DNA sequence from clone DKEYP-90G12 in ...    38   0.18   3
(BX149285) Danio rerio genomic clone DKEY-115L19, genomic su...    34   0.18   3
(CZ224634) AIAA-aad35l02.b1 Ancylostoma caninum whole genome...    36   0.18   2
(CT218875) Sus scrofa genomic clone PigE-234E12, genomic sur...    36   0.18   2
(AM626318) Entamoeba dispar GSS, clone dispar127d03.q1k.           40   0.19   2
(DU438040) 1098421014358 CHORI-243 Ovis aries genomic clone ...    36   0.19   2
(BZ170383) CH230-320F3.TV CHORI-230 Segment 2 Rattus norvegi...    36   0.19   2
(AM486265) Vitis vinifera contig VV78X190327.7, whole genome...    38   0.19   2
(AM643048) Entamoeba dispar GSS, clone dispar9h06.p1k.             38   0.19   2
(EI934315) VUH2-76G16TR VUUBBa (VUH2) Vigna unguiculata geno...    38   0.19   3
(CF469124) P16B3 Plasmodium yoelli 17X axenic hepatic stages...    38   0.19   2
(BX088695) Zebrafish DNA sequence from clone DKEY-18E5 in li...    38   0.20   2
(BX927334) Zebrafish DNA sequence from clone CH211-112H5 in ...    38   0.20   2
(BX511147) Zebrafish DNA sequence from clone DKEYP-36E3 in l...    38   0.20   2
(BX493748) Homo sapiens mRNA; EST DKFZp781O205_r1  (from clo...    38   0.20   2
(BV550190) S215P60386FD7.T0 Clara Pan troglodytes troglodyte...    38   0.20   2
(CU138544) Zebrafish DNA sequence from clone CH211-180P3 in ...    38   0.20   2
(BX548007) Zebrafish DNA sequence from clone CH211-93A2 in l...    38   0.20   2
(AL844506) Plasmodium falciparum chromosome  7.                    40   0.21   2
(CR457454) Zebrafish DNA sequence from clone DKEY-61N11 in l...    38   0.21   2
(CL101048) ISB1-36O4_Sp6.1 ISB1 Xenopus (Silurana) tropicali...    38   0.21   2
(BJ371201) Dictyostelium discoideum cDNA clone:ddc57f05, 5' ...    38   0.22   2
(DX558994) GH_MBb0039I17f GH_MBb Gossypium hirsutum genomic ...    36   0.22   2
(AU074461) Dictyostelium discoideum slug cDNA, clone SSK790.       32   0.22   3
(CE379159) tigr-gss-dog-17000334189327 Dog Library Canis lup...    36   0.22   2
(EF847989) Mus musculus C57BL/6N IST11600D12HMF1 gene trap e...    38   0.23   2
(AC185386) Atelerix albiventris clone LB4-41C11, WORKING DRA...    40   0.23   3
(EW779751) OoSal178 Asian rice gall midge salivary gland cDN...    34   0.23   2
(BQ595960) PfESToab27d03.y1 Plasmodium falciparum 3D7 asexua...    36   0.23   2
(BF527252) 602039490F2 NCI_CGAP_Brn67 Homo sapiens cDNA clon...    36   0.23   2
(DV962399) GC00370 Gracilaria changii cDNA library Gracilari...    38   0.23   2
(AG396050) Mus musculus molossinus DNA, clone:MSMg01-216A02....    38   0.24   2
(GD850284) 454GmaGlobSeed592933 Soybean Seeds Containing Glo...    32   0.24   2
(AG365683) Mus musculus molossinus DNA, clone:MSMg01-168I11....    34   0.24   2
(DW629357) CLJ355-H01.x1d-t SHGC-CLJ2 Gasterosteus aculeatus...    38   0.24   2
(AC208735) Populus trichocarpa clone JGIACSB1077-D05, comple...    36   0.24   3
(AM425707) Vitis vinifera contig VV79X002698.4, whole genome...    38   0.25   3
(CL027076) CH216-25A11_RM1.1 CH216 Xenopus (Silurana) tropic...    38   0.25   2
(AG310714) Mus musculus molossinus DNA, clone:MSMg01-093D09....    38   0.25   2
(AC192313) Atelerix albiventris clone LB4-505D4, WORKING DRA...    40   0.25   3
(AM441700) Vitis vinifera contig VV78X158800.13, whole genom...    40   0.25   2
(EE204619) b5p11z1.f1 Danio rerio 10am (morning) eye/brain c...    38   0.25   2
(BX203585) Danio rerio genomic clone DKEY-228B12, genomic su...    38   0.26   2
(AG396942) Mus musculus molossinus DNA, clone:MSMg01-217G11....    36   0.26   2
(BV217113) S233P6483RC2.T0 LabradorRetriever Canis familiari...    38   0.26   2
(DV789967) HW_LIVER_53_B03 Bos taurus CF-24-HW liver cDNA li...    36   0.26   2
(BD428842) Method and nucleic acids for pharmacogenomic meth...    38   0.26   2
(AX356370) Sequence 4 from Patent WO0181622.                       38   0.26   2
(AX348321) Sequence 16 from Patent WO0202806.                      38   0.26   2
(DX546103) GH_MBb0090M03f GH_MBb Gossypium hirsutum genomic ...    34   0.26   2
(AM638389) Entamoeba dispar GSS, clone dispar52b02.q1k.            40   0.27   2
(CE059093) tigr-gss-dog-17000322530579 Dog Library Canis lup...    34   0.27   2
(CT573356) Zebrafish DNA sequence from clone CH211-276F18 in...    46   0.27   3
(AG288357) Mus musculus molossinus DNA, clone:MSMg01-062F20....    38   0.27   2
(CE643166) tigr-gss-dog-17000366873883 Dog Library Canis lup...    36   0.27   2
(AC109574) Rattus norvegicus clone CH230-121A11, WORKING DRA...    38   0.27   2
(BJ409293) Dictyostelium discoideum cDNA clone:dds40k17, 3' ...    38   0.28   2
(CG757503) P052-4-C08.za Ppa EcoRI BAC Library Pristionchus ...    40   0.28   2
(AM456182) Vitis vinifera contig VV78X245481.12, whole genom...    38   0.28   2
(EC474108) 271102_0995_0249 LNCAP + R1881 synthetic Androgen...    34   0.28   2
(DJ386640) Diagnosis of Diseases Associated with Metastasis.       40   0.29   2
(BD452679) Diagnosis of Diseases Associated with tumor suppr...    40   0.29   2
(AX281436) Sequence 100 from Patent WO0177376.                     40   0.29   2
(AX251158) Sequence 126 from Patent WO0168912.                     40   0.29   2
(BH395440) AG-ND-138N12.TR.1 ND-TAM Anopheles gambiae genomi...    36   0.29   2
(AC151744) Medicago truncatula chromosome 8 clone mth2-32k10...    44   0.30   2
(CE404932) tigr-gss-dog-17000334760620 Dog Library Canis lup...    36   0.30   2
(AC115891) Mus musculus chromosome 10, clone RP24-421G4, com...    40   0.30   3
(AQ479840) RPCI-11-258L7.TJ RPCI-11 Homo sapiens genomic clo...    38   0.30   2
(BV423154) S237P6210RA1.T0 PortugueseWaterDog Canis familiar...    36   0.31   2
(BH381667) AG-ND-138N12.TR ND-TAM Anopheles gambiae genomic ...    36   0.31   2
(CT030039) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    46   0.31   3
(AG386981) Mus musculus molossinus DNA, clone:MSMg01-201G10....    42   0.31   2
(AL590632) Human DNA sequence from clone RP11-52I18 on chrom...    40   0.31   3
(BJ402936) Dictyostelium discoideum cDNA clone:dds18b21, 3' ...    34   0.31   2

>(C84201) Dictyostelium discoideum slug cDNA, clone SSC484.
          Length = 152

 Score =  151 bits (76), Expect(2) = 9e-45
 Identities = 76/76 (100%)
 Strand = Plus / Plus


Query: 1  aaataaataaaataaataatttttgttgaattggataatgcgattgttggttgtatcctt 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  aaataaataaaataaataatttttgttgaattggataatgcgattgttggttgtatcctt 60


Query: 61 gagtgttgttattaat 76
          ||||||||||||||||
Sbjct: 61 gagtgttgttattaat 76

 Score = 60.0 bits (30), Expect(2) = 9e-45
 Identities = 30/30 (100%)
 Strand = Plus / Plus


Query: 89  gaaatataaaataaaataaagcataacaaa 118
           ||||||||||||||||||||||||||||||
Sbjct: 89  gaaatataaaataaaataaagcataacaaa 118

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 102105510
Number of Hits to DB: 244,143,253
Number of extensions: 30707948
Number of successful extensions: 11541272
Number of sequences better than 10.0: 6200
Length of query: 151
Length of database: 101,790,757,118
Length adjustment: 22
Effective length of query: 129
Effective length of database: 99,544,435,898
Effective search space: 12841232230842
Effective search space used: 12841232230842
X1: 11 (21.8 bits)
S2: 21 (42.1 bits)
protein update 2009. 7.31
Homology vs Protein 
Query= Contig-U04716-1 (Contig-U04716-1Q) /CSM_Contig/Contig-U04716-1Q.Seq.d
         (151 letters)

Database: nrp_A
           3,268,448 sequences; 1,061,185,681 total letters

Searching..................................................done

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3268448
Number of Hits to DB: 129,856,679
Number of extensions: 1003570
Number of successful extensions: 1695
Number of sequences better than 10.0: 0
Number of HSP's gapped: 1695
Number of HSP's successfully gapped: 0
Length of query: 50
Length of database: 1,061,185,681
Length adjustment: 23
Effective length of query: 27
Effective length of database: 986,011,377
Effective search space: 26622307179
Effective search space used: 26622307179
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 25 (14.2 bits)
PSORT 

 psg: 0.94  gvh: 0.49  alm: 0.27  top: 0.60  tms: 0.07  mit: 0.40  mip: 0.00
 nuc: 0.04  erl: 0.00  erm: 1.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.42  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 1.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 32.0 %: cytoplasmic
	 24.0 %: mitochondrial
	 20.0 %: nuclear
	  8.0 %: plasma membrane
	  8.0 %: endoplasmic reticulum
	  4.0 %: vesicles of secretory system
	  4.0 %: peroxisomal

>> prediction for Contig-U04716-1 is cyt
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 1
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0