Contig-U04715-1
Contig ID Contig-U04715-1
Contig update 2001. 8.29
Contig sequence
>Contig-U04715-1 (Contig-U04715-1Q) /CSM_Contig/Contig-U04715-1Q.Seq.d
ACCGATTGATAGTTCTCCGATTGCAAAGNTGGTNATTGNANTGTTTTCTG
GTGTNCCCGATTTAGTTGCCCCNGTTGNAGNGAAATTNGCAAGGANTGAN
CNAATTNTAANTNCAANNCATANAAAAGNGAATGCATTNGANGAATTNCA
CTATTTTNNCAATANGAATTTCNCAAATGATAAATGTAAAATNCATTATC
TATTGGTTGCTTCAAATGATATCTCTGGCNCAATAACAGATGTTGCAAAT
AAATATGGAATAAATTGTGTTGTATTAGGTTCAACTGGTACAAGTTTAGA
AAAATTATTAATTGGTTCCGTTAGTTCAAAAGTTCNCCGTNCCTCACATT
GTTCAGTTTTAATATCNCCCTAATCTTTTTTTTTTTAATACAAATTGTTA
AAAAAAAAATAAAAAATAAAAAATAAATAAAATAAGATTGTGCATATAAA
AAAAAAAAAAAAAAAAA

Gap no gap
Contig length 467
Chromosome number (1..6, M) 2
Chromosome length 8467578
Start point 7588592
End point 7588125
Strand (PLUS/MINUS) MINUS
Number of clones 1
Number of EST 1
Link to clone list U04715
List of clone(s)

est1=SSC465E,1,468
Translated Amino Acid sequence
PIDSSPIAKXVIXXFSGVPDLVAPVXXKXARXXXIXXXXHXKXNAXXEXHYFXNXNFXND
KCKXHYLLVASNDISGXITDVANKYGINCVVLGSTGTSLEKLLIGSVSSKVXRXSHCSVL
ISP*sfff*ykllkkk*kiknk*nkivhikkkkkk


Translated Amino Acid sequence (All Frames)
Frame A:
td**fsdckxgxxxvfwcxrfscpxxxeixkx*xnxxxxxxkxecixxixlfxqxefxk*
*m*nxlsigcfk*ylwxnnrcck*iwnklccirfnwykfrkiinwfr*fksspxltlfsf
nixlifffliqivkkkiknkk*ik*dcaykkkkkk


Frame B:
PIDSSPIAKXVIXXFSGVPDLVAPVXXKXARXXXIXXXXHXKXNAXXEXHYFXNXNFXND
KCKXHYLLVASNDISGXITDVANKYGINCVVLGSTGTSLEKLLIGSVSSKVXRXSHCSVL
ISP*sfff*ykllkkk*kiknk*nkivhikkkkkk


Frame C:
rlivlrlqxwxlxcflvxpi*lpxlxxnxqgxxxx*xqxixkxmhxxnxtixxixisqmi
nvkxiiywllqmislaq*qmlqinme*ivly*vqlvqv*kny*lvplvqkfxvphivqf*
yxpnlfffntnc*kknkk*kinkirlci*kkkkkk


own update 2004. 6.10
Homology vs CSM-cDNA
Query= Contig-U04715-1 (Contig-U04715-1Q)
/CSM_Contig/Contig-U04715-1Q.Seq.d
(467 letters)

Database: CSM
6905 sequences; 5,674,871 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U04715-1 (Contig-U04715-1Q) /CSM_Contig/Conti... 559 e-160
Contig-U00949-1 (Contig-U00949-1Q) /CSM_Contig/Conti... 38 0.008
Contig-U12548-1 (Contig-U12548-1Q) /CSM_Contig/Conti... 32 0.50
Contig-U11372-1 (Contig-U11372-1Q) /CSM_Contig/Conti... 32 0.50
Contig-U08350-1 (Contig-U08350-1Q) /CSM_Contig/Conti... 32 0.50
Contig-U08199-1 (Contig-U08199-1Q) /CSM_Contig/Conti... 32 0.50
Contig-U06848-1 (Contig-U06848-1Q) /CSM_Contig/Conti... 32 0.50
Contig-U06540-1 (Contig-U06540-1Q) /CSM_Contig/Conti... 32 0.50
Contig-U04971-1 (Contig-U04971-1Q) /CSM_Contig/Conti... 32 0.50
Contig-U09392-1 (Contig-U09392-1Q) /CSM_Contig/Conti... 30 2.0

>Contig-U04715-1 (Contig-U04715-1Q) /CSM_Contig/Contig-U04715-1Q.Seq.d
Length = 467

Score = 559 bits (282), Expect = e-160
Identities = 375/375 (100%)
Strand = Plus / Plus


Query: 1 accgattgatagttctccgattgcaaagntggtnattgnantgttttctggtgtncccga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 accgattgatagttctccgattgcaaagntggtnattgnantgttttctggtgtncccga 60


Query: 61 tttagttgccccngttgnagngaaattngcaaggantgancnaattntaantncaannca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tttagttgccccngttgnagngaaattngcaaggantgancnaattntaantncaannca 120


Query: 121 tanaaaagngaatgcattngangaattncactattttnncaatangaatttcncaaatga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tanaaaagngaatgcattngangaattncactattttnncaatangaatttcncaaatga 180


Query: 181 taaatgtaaaatncattatctattggttgcttcaaatgatatctctggcncaataacaga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 taaatgtaaaatncattatctattggttgcttcaaatgatatctctggcncaataacaga 240


Query: 241 tgttgcaaataaatatggaataaattgtgttgtattaggttcaactggtacaagtttaga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tgttgcaaataaatatggaataaattgtgttgtattaggttcaactggtacaagtttaga 300


Query: 301 aaaattattaattggttccgttagttcaaaagttcnccgtncctcacattgttcagtttt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 aaaattattaattggttccgttagttcaaaagttcnccgtncctcacattgttcagtttt 360


Query: 361 aatatcnccctaatc 375
|||||||||||||||
Sbjct: 361 aatatcnccctaatc 375


Score = 30.2 bits (15), Expect = 2.0
Identities = 15/15 (100%)
Strand = Plus / Plus


Query: 433 taagattgtgcatat 447
|||||||||||||||
Sbjct: 433 taagattgtgcatat 447


>Contig-U00949-1 (Contig-U00949-1Q) /CSM_Contig/Contig-U00949-1Q.Seq.d
Length = 1300

Score = 38.2 bits (19), Expect = 0.008
Identities = 28/31 (90%)
Strand = Plus / Plus


Query: 284 actggtacaagtttagaaaaattattaattg 314
|||| ||||| |||||| |||||||||||||
Sbjct: 543 actgttacaattttagataaattattaattg 573


>Contig-U12548-1 (Contig-U12548-1Q) /CSM_Contig/Contig-U12548-1Q.Seq.d
Length = 1214

Score = 32.2 bits (16), Expect = 0.50
Identities = 16/16 (100%)
Strand = Plus / Minus


Query: 194 cattatctattggttg 209
||||||||||||||||
Sbjct: 190 cattatctattggttg 175


Database: CSM
Posted date: Jun 9, 2004 7:35 PM
Number of letters in database: 5,674,871
Number of sequences in database: 6905

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3174
Number of Sequences: 6905
Number of extensions: 3174
Number of successful extensions: 304
Number of sequences better than 10.0: 90
length of query: 467
length of database: 5,674,871
effective HSP length: 16
effective length of query: 451
effective length of database: 5,564,391
effective search space: 2509540341
effective search space used: 2509540341
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)
dna update 2009. 6.28
Homology vs DNA
Query= Contig-U04715-1 (Contig-U04715-1Q) /CSM_Contig/Contig-U04715-1Q.Seq.d
(467 letters)

Database: ddbj_A
102,105,510 sequences; 101,790,757,118 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(C84190) Dictyostelium discoideum slug cDNA, clone SSC465. 559 e-155 2
(AC115588) Dictyostelium discoideum chromosome 2 map complem... 519 e-143 1
(EW965373) BRHL_03_N23_T7 Headlice composite library with al... 52 0.019 1
(EK176254) 1095458099097 Global-Ocean-Sampling_GS-31-01-01-1... 48 0.30 1
(EW965972) BRHL_05_O18_T7 Headlice composite library with al... 48 0.30 1
(EW965952) BRHL_05_N17_T7 Headlice composite library with al... 48 0.30 1
(BX470238) Zebrafish DNA sequence from clone DKEY-11F14 in l... 46 1.2 1
(BX640405) Zebrafish DNA sequence *** SEQUENCING CANCELLED *... 46 1.2 1
(EK545624) 1095516081613 Global-Ocean-Sampling_GS-32-01-01-1... 46 1.2 1
(EK258893) 1095462067612 Global-Ocean-Sampling_GS-31-01-01-1... 46 1.2 1
(ER967676) AF__Bc0011I24r AF__Bc Aquilegia formosa genomic, ... 44 4.7 1
(EJ641477) 1093011940810 Global-Ocean-Sampling_GS-29-01-01-1... 44 4.7 1
(EJ495996) 1095403574351 Global-Ocean-Sampling_GS-28-01-01-1... 44 4.7 1

>(C84190) Dictyostelium discoideum slug cDNA, clone SSC465.
Length = 468

Score = 559 bits (282), Expect(2) = e-155
Identities = 375/375 (100%)
Strand = Plus / Plus


Query: 1 accgattgatagttctccgattgcaaagntggtnattgnantgttttctggtgtncccga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 accgattgatagttctccgattgcaaagntggtnattgnantgttttctggtgtncccga 60


Query: 61 tttagttgccccngttgnagngaaattngcaaggantgancnaattntaantncaannca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tttagttgccccngttgnagngaaattngcaaggantgancnaattntaantncaannca 120


Query: 121 tanaaaagngaatgcattngangaattncactattttnncaatangaatttcncaaatga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tanaaaagngaatgcattngangaattncactattttnncaatangaatttcncaaatga 180


Query: 181 taaatgtaaaatncattatctattggttgcttcaaatgatatctctggcncaataacaga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 taaatgtaaaatncattatctattggttgcttcaaatgatatctctggcncaataacaga 240


Query: 241 tgttgcaaataaatatggaataaattgtgttgtattaggttcaactggtacaagtttaga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tgttgcaaataaatatggaataaattgtgttgtattaggttcaactggtacaagtttaga 300


Query: 301 aaaattattaattggttccgttagttcaaaagttcnccgtncctcacattgttcagtttt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 aaaattattaattggttccgttagttcaaaagttcnccgtncctcacattgttcagtttt 360


Query: 361 aatatcnccctaatc 375
|||||||||||||||
Sbjct: 361 aatatcnccctaatc 375

Score = 26.3 bits (13), Expect(2) = e-155
Identities = 13/13 (100%)
Strand = Plus / Plus


Query: 387 aatacaaattgtt 399
|||||||||||||
Sbjct: 387 aatacaaattgtt 399

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 102105510
Number of Hits to DB: 278,661,213
Number of extensions: 16233016
Number of successful extensions: 1135118
Number of sequences better than 10.0: 13
Length of query: 467
Length of database: 101,790,757,118
Length adjustment: 23
Effective length of query: 444
Effective length of database: 99,442,330,388
Effective search space: 44152394692272
Effective search space used: 44152394692272
X1: 11 (21.8 bits)
S2: 21 (42.1 bits)

protein update 2009. 7.31
Homology vs Protein
Query= Contig-U04715-1 (Contig-U04715-1Q) /CSM_Contig/Contig-U04715-1Q.Seq.d
(467 letters)

Database: nrp_A
3,268,448 sequences; 1,061,185,681 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

AC115588_1(AC115588|pid:none) Dictyostelium discoideum chromosom... 177 1e-43
CR522870_382(CR522870|pid:none) Desulfotalea psychrophila LSv54 ... 47 2e-04
CP001291_1626(CP001291|pid:none) Cyanothece sp. PCC 7424, comple... 46 4e-04
CP001197_798(CP001197|pid:none) Desulfovibrio vulgaris str. 'Miy... 45 0.001
AE017285_2088(AE017285|pid:none) Desulfovibrio vulgaris subsp. v... 44 0.001
CP000527_1127(CP000527|pid:none) Desulfovibrio vulgaris subsp. v... 44 0.001
AM114193_2863(AM114193|pid:none) Uncultured methanogenic archaeo... 44 0.002
AE017285_540(AE017285|pid:none) Desulfovibrio vulgaris subsp. vu... 43 0.003
CP001638_2451(CP001638|pid:none) Geobacillus sp. WCH70, complete... 42 0.005
CP000817_3812(CP000817|pid:none) Lysinibacillus sphaericus C3-41... 42 0.007
CP000609_1011(CP000609|pid:none) Methanococcus maripaludis C5, c... 42 0.009
CP000867_303(CP000867|pid:none) Methanococcus maripaludis C6, co... 42 0.009
AP010904_3733(AP010904|pid:none) Desulfovibrio magneticus RS-1 D... 41 0.012
AM114193_217(AM114193|pid:none) Uncultured methanogenic archaeon... 41 0.012
CP001344_3659(CP001344|pid:none) Cyanothece sp. PCC 7425, comple... 40 0.020
CP000557_2638(CP000557|pid:none) Geobacillus thermodenitrificans... 40 0.020
CP000077_1521(CP000077|pid:none) Sulfolobus acidocaldarius DSM 6... 40 0.020
CP000922_484(CP000922|pid:none) Anoxybacillus flavithermus WK1, ... 40 0.034
CP000816_455(CP000816|pid:none) Ignicoccus hospitalis KIN4/I, co... 40 0.034
CP000828_6178(CP000828|pid:none) Acaryochloris marina MBIC11017,... 40 0.034
CP001147_1321(CP001147|pid:none) Thermodesulfovibrio yellowstoni... 40 0.034
CP000386_2547(CP000386|pid:none) Rubrobacter xylanophilus DSM 99... 39 0.044
AE006469_602(AE006469|pid:none) Sinorhizobium meliloti 1021 plas... 39 0.044
CP000411_1060(CP000411|pid:none) Oenococcus oeni PSU-1, complete... 39 0.044
CP000517_655(CP000517|pid:none) Lactobacillus helveticus DPC 457... 39 0.044
(P42297) RecName: Full=Uncharacterized protein yxiE; Flags: Prec... 39 0.058
AP006840_924(AP006840|pid:none) Symbiobacterium thermophilum IAM... 39 0.076
CP000141_2053(CP000141|pid:none) Carboxydothermus hydrogenoforma... 39 0.076
AL935258_237(AL935258|pid:none) Lactobacillus plantarum strain W... 39 0.076
CP001656_5431(CP001656|pid:none) Paenibacillus sp. JDR-2, comple... 38 0.099
CP000830_2200(CP000830|pid:none) Dinoroseobacter shibae DFL 12, ... 38 0.099
CP000141_82(CP000141|pid:none) Carboxydothermus hydrogenoformans... 38 0.099
CP000682_253(CP000682|pid:none) Metallosphaera sedula DSM 5348, ... 38 0.099
CP000386_166(CP000386|pid:none) Rubrobacter xylanophilus DSM 994... 38 0.13
CP001339_852(CP001339|pid:none) Thioalkalivibrio sp. HL-EbGR7, c... 38 0.13
CP000096_54(CP000096|pid:none) Pelodictyon luteolum DSM 273, com... 38 0.13
CP001013_907(CP001013|pid:none) Leptothrix cholodnii SP-6, compl... 38 0.13
BA000023_2531(BA000023|pid:none) Sulfolobus tokodaii str. 7 DNA,... 37 0.17
AE006641_2933(AE006641|pid:none) Sulfolobus solfataricus P2, com... 37 0.17
CP000712_2117(CP000712|pid:none) Pseudomonas putida F1, complete... 37 0.17
CP000682_1971(CP000682|pid:none) Metallosphaera sedula DSM 5348,... 37 0.17
CP000477_15(CP000477|pid:none) Methanosaeta thermophila PT, comp... 37 0.17
AE017333_4175(AE017333|pid:none) Bacillus licheniformis DSM 13, ... 37 0.17
AE017355_2166(AE017355|pid:none) Bacillus thuringiensis serovar ... 37 0.22
CP000233_1066(CP000233|pid:none) Lactobacillus salivarius UCC118... 37 0.22
CP000254_819(CP000254|pid:none) Methanospirillum hungatei JF-1, ... 37 0.22
AM942759_1594(AM942759|pid:none) Proteus mirabilis strain HI4320... 37 0.22
CP000117_4176(CP000117|pid:none) Anabaena variabilis ATCC 29413,... 37 0.22
CP001124_1496(CP001124|pid:none) Geobacter bemidjiensis Bem, com... 37 0.29
CP000386_102(CP000386|pid:none) Rubrobacter xylanophilus DSM 994... 37 0.29
AE017198_788(AE017198|pid:none) Lactobacillus johnsonii NCC 533,... 37 0.29
CP000852_1814(CP000852|pid:none) Caldivirga maquilingensis IC-16... 37 0.29
CP000560_3515(CP000560|pid:none) Bacillus amyloliquefaciens FZB4... 37 0.29
CP000860_263(CP000860|pid:none) Candidatus Desulforudis audaxvia... 37 0.29
AP009552_5866(AP009552|pid:none) Microcystis aeruginosa NIES-843... 36 0.38
AE015451_2622(AE015451|pid:none) Pseudomonas putida KT2440 compl... 36 0.38
AE016877_4422(AE016877|pid:none) Bacillus cereus ATCC 14579, com... 36 0.38
AP008230_4707(AP008230|pid:none) Desulfitobacterium hafniense Y5... 36 0.38
AE008691_1766(AE008691|pid:none) Thermoanaerobacter tengcongensi... 36 0.38
CP000493_669(CP000493|pid:none) Hyperthermus butylicus DSM 5456,... 36 0.38
AE017180_512(AE017180|pid:none) Geobacter sulfurreducens PCA, co... 36 0.38
CP000903_4344(CP000903|pid:none) Bacillus weihenstephanensis KBA... 36 0.38
CP000362_3545(CP000362|pid:none) Roseobacter denitrificans OCh 1... 36 0.38
CP000485_3991(CP000485|pid:none) Bacillus thuringiensis str. Al ... 36 0.38
AE006470_106(AE006470|pid:none) Chlorobium tepidum TLS, complete... 36 0.38
CP000001_4329(CP000001|pid:none) Bacillus cereus E33L, complete ... 36 0.38
CR936503_836(CR936503|pid:none) Lactobacillus sakei strain 23K c... 36 0.38
CP000678_485(CP000678|pid:none) Methanobrevibacter smithii ATCC ... 36 0.38
AE016830_2833(AE016830|pid:none) Enterococcus faecalis V583, com... 36 0.49
CP001504_52(CP001504|pid:none) Burkholderia glumae BGR1 chromoso... 36 0.49
DQ520130_3(DQ520130|pid:none) Bacillus pseudofirmus strain OF4 e... 36 0.49
CP000416_161(CP000416|pid:none) Lactobacillus brevis ATCC 367, c... 36 0.49
CP000379_2114(CP000379|pid:none) Burkholderia cenocepacia AU 105... 35 0.64
AP008231_251(AP008231|pid:none) Synechococcus elongatus PCC 6301... 35 0.64
CP001037_4522(CP001037|pid:none) Nostoc punctiforme PCC 73102, c... 35 0.64
CP000478_800(CP000478|pid:none) Syntrophobacter fumaroxidans MPO... 35 0.64
CP001097_2229(CP001097|pid:none) Chlorobium limicola DSM 245, co... 35 0.64
CP000386_2990(CP000386|pid:none) Rubrobacter xylanophilus DSM 99... 35 0.64
CR936257_2556(CR936257|pid:none) Natronomonas pharaonis DSM 2160... 35 0.64
CR936503_37(CR936503|pid:none) Lactobacillus sakei strain 23K co... 35 0.64
CP000360_2937(CP000360|pid:none) Acidobacteria bacterium Ellin34... 35 0.64
AM747721_52(AM747721|pid:none) Burkholderia cenocepacia J2315 ch... 35 0.64
CP000423_1112(CP000423|pid:none) Lactobacillus casei ATCC 334, c... 35 0.64
AE000782_1908(AE000782|pid:none) Archaeoglobus fulgidus DSM 4304... 35 0.84
BA000045_2689(BA000045|pid:none) Gloeobacter violaceus PCC 7421 ... 35 0.84
CP001147_699(CP001147|pid:none) Thermodesulfovibrio yellowstonii... 35 0.84
A69220(A69220) conserved hypothetical protein MTH898 - Methanoba... 35 0.84
AC161032_19(AC161032|pid:none) Medicago truncatula clone mth2-21... 35 0.84
CP000450_175(CP000450|pid:none) Nitrosomonas eutropha C91, compl... 35 0.84
CP001100_2484(CP001100|pid:none) Chloroherpeton thalassium ATCC ... 35 0.84
CP001291_3703(CP001291|pid:none) Cyanothece sp. PCC 7424, comple... 35 0.84
AC161032_16(AC161032|pid:none) Medicago truncatula clone mth2-21... 35 0.84
BA000011_716(BA000011|pid:none) Thermoplasma volcanium GSS1 DNA,... 35 0.84
CP000828_4804(CP000828|pid:none) Acaryochloris marina MBIC11017,... 35 0.84
AP007281_474(AP007281|pid:none) Lactobacillus reuteri JCM 1112 D... 35 0.84
CP000414_1753(CP000414|pid:none) Leuconostoc mesenteroides subsp... 35 0.84
AE017262_1587(AE017262|pid:none) Listeria monocytogenes str. 4b ... 35 0.84
AD1272(AD1272) hypothetical protein lmo1580 [imported] - Listeri... 35 0.84
AM263198_1593(AM263198|pid:none) Listeria welshimeri serovar 6b ... 35 0.84
CP000653_1138(CP000653|pid:none) Enterobacter sp. 638, complete ... 35 0.84
CP001615_678(CP001615|pid:none) Exiguobacterium sp. AT1b, comple... 35 0.84
AM114193_2772(AM114193|pid:none) Uncultured methanogenic archaeo... 35 1.1
CP001026_47(CP001026|pid:none) Burkholderia ambifaria MC40-6 chr... 35 1.1
AM406671_91(AM406671|pid:none) Lactococcus lactis subsp. cremori... 35 1.1
CP000607_203(CP000607|pid:none) Chlorobium phaeovibrioides DSM 2... 35 1.1
EU186344_1(EU186344|pid:none) Brassica rapa clone S28 universal ... 35 1.1
AE005176_75(AE005176|pid:none) Lactococcus lactis subsp. lactis ... 35 1.1
CP001504_1853(CP001504|pid:none) Burkholderia glumae BGR1 chromo... 35 1.1
CP000112_98(CP000112|pid:none) Desulfovibrio desulfuricans G20, ... 35 1.1
CP000441_1784(CP000441|pid:none) Burkholderia ambifaria AMMD chr... 35 1.1
CP000077_822(CP000077|pid:none) Sulfolobus acidocaldarius DSM 63... 35 1.1
CP001287_3819(CP001287|pid:none) Cyanothece sp. PCC 8801, comple... 35 1.1
AL954747_91(AL954747|pid:none) Nitrosomonas europaea ATCC 19718,... 35 1.1
BA000004_415(BA000004|pid:none) Bacillus halodurans C-125 DNA, c... 35 1.1
CP000607_1026(CP000607|pid:none) Chlorobium phaeovibrioides DSM ... 34 1.4
AM114193_1531(AM114193|pid:none) Uncultured methanogenic archaeo... 34 1.4
AC1497(AC1497) conserved hypothetical protein lin0515 [imported]... 34 1.4
AM747721_298(AM747721|pid:none) Burkholderia cenocepacia J2315 c... 34 1.4
BX571966_857(BX571966|pid:none) Burkholderia pseudomallei strain... 34 1.4
CP000477_908(CP000477|pid:none) Methanosaeta thermophila PT, com... 34 1.4
CP001110_1081(CP001110|pid:none) Pelodictyon phaeoclathratiforme... 34 1.4
AM263198_472(AM263198|pid:none) Listeria welshimeri serovar 6b s... 34 1.4
CP000116_2614(CP000116|pid:none) Thiobacillus denitrificans ATCC... 34 1.4
CP000686_879(CP000686|pid:none) Roseiflexus sp. RS-1, complete g... 34 1.4
AD1139(AD1139) conserved hypothetical protein lmo0515 [imported]... 34 1.4
CP000968_772(CP000968|pid:none) Candidatus Korarchaeum cryptofil... 34 1.4
CP000411_1491(CP000411|pid:none) Oenococcus oeni PSU-1, complete... 34 1.9
AE005176_1858(AE005176|pid:none) Lactococcus lactis subsp. lacti... 34 1.9
CP000159_1696(CP000159|pid:none) Salinibacter ruber DSM 13855, c... 34 1.9
CP000109_1713(CP000109|pid:none) Thiomicrospira crunogena XCL-2,... 34 1.9
EU959618_1(EU959618|pid:none) Zea mays clone 218887 ethylene-res... 34 1.9
AM746676_3299(AM746676|pid:none) Sorangium cellulosum 'So ce 56'... 34 1.9
BA000028_2190(BA000028|pid:none) Oceanobacillus iheyensis HTE831... 34 1.9
AC152921_18(AC152921|pid:none) Medicago truncatula clone mth2-10... 34 1.9
(Q4L751) RecName: Full=Putative universal stress protein SH1215;... 34 1.9
CR522870_1340(CR522870|pid:none) Desulfotalea psychrophila LSv54... 34 1.9
CP001399_843(CP001399|pid:none) Sulfolobus islandicus L.S.2.15, ... 34 1.9
CP000510_2573(CP000510|pid:none) Psychromonas ingrahamii 37, com... 34 1.9
CP000393_2043(CP000393|pid:none) Trichodesmium erythraeum IMS101... 34 1.9
CP000251_1443(CP000251|pid:none) Anaeromyxobacter dehalogenans 2... 34 1.9
CP000422_340(CP000422|pid:none) Pediococcus pentosaceus ATCC 257... 34 1.9
CP000828_1576(CP000828|pid:none) Acaryochloris marina MBIC11017,... 34 1.9
CP000764_523(CP000764|pid:none) Bacillus cereus subsp. cytotoxis... 34 1.9
CP001053_1544(CP001053|pid:none) Burkholderia phytofirmans PsJN ... 34 1.9
AP010904_4222(AP010904|pid:none) Desulfovibrio magneticus RS-1 D... 33 2.4
CT971583_2350(CT971583|pid:none) Synechococcus WH7803 complete g... 33 2.4
AP008937_453(AP008937|pid:none) Lactobacillus fermentum IFO 3956... 33 2.4
CP000270_633(CP000270|pid:none) Burkholderia xenovorans LB400 ch... 33 2.4
AP007281_1566(AP007281|pid:none) Lactobacillus reuteri JCM 1112 ... 33 2.4
CP000660_2266(CP000660|pid:none) Pyrobaculum arsenaticum DSM 135... 33 2.4
CP001399_762(CP001399|pid:none) Sulfolobus islandicus L.S.2.15, ... 33 2.4
(P74148) RecName: Full=Uncharacterized protein sll1388; &BA0000... 33 2.4
CP001400_678(CP001400|pid:none) Sulfolobus islandicus M.14.25, c... 33 2.4
AP006840_2394(AP006840|pid:none) Symbiobacterium thermophilum IA... 33 2.4
CP001403_899(CP001403|pid:none) Sulfolobus islandicus Y.G.57.14,... 33 2.4
CP000441_595(CP000441|pid:none) Burkholderia ambifaria AMMD chro... 33 2.4
CP001359_2477(CP001359|pid:none) Anaeromyxobacter dehalogenans 2... 33 2.4
AM398681_909(AM398681|pid:none) Flavobacterium psychrophilum JIP... 33 2.4
CP000159_1281(CP000159|pid:none) Salinibacter ruber DSM 13855, c... 33 3.2
CP000828_4928(CP000828|pid:none) Acaryochloris marina MBIC11017,... 33 3.2
AM114193_780(AM114193|pid:none) Uncultured methanogenic archaeon... 33 3.2
CP001097_837(CP001097|pid:none) Chlorobium limicola DSM 245, com... 33 3.2
AP009386_30(AP009386|pid:none) Burkholderia multivorans ATCC 176... 33 3.2
CP000159_656(CP000159|pid:none) Salinibacter ruber DSM 13855, co... 33 3.2
CP000478_619(CP000478|pid:none) Syntrophobacter fumaroxidans MPO... 33 3.2
AE017261_821(AE017261|pid:none) Picrophilus torridus DSM 9790, c... 33 3.2
CP000504_1847(CP000504|pid:none) Pyrobaculum islandicum DSM 4184... 33 3.2
CP000733_190(CP000733|pid:none) Coxiella burnetii Dugway 5J108-1... 33 3.2
AP010904_3316(AP010904|pid:none) Desulfovibrio magneticus RS-1 D... 33 3.2
BA000039_2371(BA000039|pid:none) Thermosynechococcus elongatus B... 33 3.2
CP000435_2657(CP000435|pid:none) Synechococcus sp. CC9311, compl... 33 3.2
CP001287_4009(CP001287|pid:none) Cyanothece sp. PCC 8801, comple... 33 3.2
AB271195_1(AB271195|pid:none) Potamogeton distinctus mRNA for un... 33 3.2
CP001624_438(CP001624|pid:none) Rhizobium leguminosarum bv. trif... 33 3.2
(P45680) RecName: Full=Universal stress protein A homolog 2; &A... 33 3.2
AL445064_260(AL445064|pid:none) Thermoplasma acidophilum complet... 33 3.2
CP000251_1440(CP000251|pid:none) Anaeromyxobacter dehalogenans 2... 33 3.2
(O27222) RecName: Full=Uncharacterized protein MTH_1154; &AE000... 33 3.2
AL935255_196(AL935255|pid:none) Lactobacillus plantarum strain W... 33 3.2
CP000660_1429(CP000660|pid:none) Pyrobaculum arsenaticum DSM 135... 33 3.2
CP001019_25(CP001019|pid:none) Coxiella burnetii CbuG_Q212, comp... 33 3.2
AP009389_1336(AP009389|pid:none) Pelotomaculum thermopropionicum... 33 3.2
AG1946(AG1946) hypothetical protein all1122 [imported] - Nostoc ... 33 3.2
A86854(A86854) conserved hypothetical protein ytaA [imported] - ... 33 3.2
CP001110_62(CP001110|pid:none) Pelodictyon phaeoclathratiforme B... 33 4.2
CP001407_575(CP001407|pid:none) Bacillus cereus 03BB102, complet... 33 4.2
CR936503_645(CR936503|pid:none) Lactobacillus sakei strain 23K c... 33 4.2
CP001172_757(CP001172|pid:none) Acinetobacter baumannii AB307-02... 33 4.2
AE010300_1211(AE010300|pid:none) Leptospira interrogans serovar ... 33 4.2
CP000227_646(CP000227|pid:none) Bacillus cereus Q1, complete gen... 33 4.2
AP009552_4896(AP009552|pid:none) Microcystis aeruginosa NIES-843... 33 4.2
CP000386_2999(CP000386|pid:none) Rubrobacter xylanophilus DSM 99... 33 4.2
CP000152_3130(CP000152|pid:none) Burkholderia sp. 383 chromosome... 33 4.2
AP006618_3010(AP006618|pid:none) Nocardia farcinica IFM 10152 DN... 33 4.2
AE017355_552(AE017355|pid:none) Bacillus thuringiensis serovar k... 33 4.2
AE009441_1661(AE009441|pid:none) Pyrobaculum aerophilum str. IM2... 33 4.2
AM420293_2359(AM420293|pid:none) Saccharopolyspora erythraea NRR... 33 4.2
CP000937_746(CP000937|pid:none) Francisella philomiragia subsp. ... 33 4.2
AM286690_1011(AM286690|pid:none) Alcanivorax borkumensis SK2, co... 33 4.2
CP000817_3956(CP000817|pid:none) Lysinibacillus sphaericus C3-41... 33 4.2
CP000816_562(CP000816|pid:none) Ignicoccus hospitalis KIN4/I, co... 33 4.2
CP000252_2218(CP000252|pid:none) Syntrophus aciditrophicus SB, c... 33 4.2
CR954253_195(CR954253|pid:none) Lactobacillus delbrueckii subsp.... 32 5.4
CP000038_528(CP000038|pid:none) Shigella sonnei Ss046, complete ... 32 5.4
CP001063_459(CP001063|pid:none) Shigella boydii CDC 3083-94, com... 32 5.4
AC016447_7(AC016447|pid:none) Arabidopsis thaliana chromosome 1 ... 32 5.4
CP001338_746(CP001338|pid:none) Candidatus Methanosphaerula palu... 32 5.4
CP001291_5115(CP001291|pid:none) Cyanothece sp. PCC 7424, comple... 32 5.4
CP000951_2647(CP000951|pid:none) Synechococcus sp. PCC 7002, com... 32 5.4
AM420293_1943(AM420293|pid:none) Saccharopolyspora erythraea NRR... 32 5.4
AE005176_879(AE005176|pid:none) Lactococcus lactis subsp. lactis... 32 5.4
AM295250_1305(AM295250|pid:none) Staphylococcus carnosus subsp. ... 32 5.4
CP000300_1412(CP000300|pid:none) Methanococcoides burtonii DSM 6... 32 5.4
BA000045_4214(BA000045|pid:none) Gloeobacter violaceus PCC 7421 ... 32 5.4
EF085809_1(EF085809|pid:none) Picea sitchensis clone WS0287_N06 ... 32 5.4
CP001014_1199(CP001014|pid:none) Thermoproteus neutrophilus V24S... 32 5.4
BA000011_645(BA000011|pid:none) Thermoplasma volcanium GSS1 DNA,... 32 5.4
CR543861_1841(CR543861|pid:none) Acinetobacter sp. ADP1 complete... 32 7.1
CP000493_588(CP000493|pid:none) Hyperthermus butylicus DSM 5456,... 32 7.1
CP000612_2136(CP000612|pid:none) Desulfotomaculum reducens MI-1,... 32 7.1
CP001037_1774(CP001037|pid:none) Nostoc punctiforme PCC 73102, c... 32 7.1
AF332574_3(AF332574|pid:none) Desulfovibrio gigas putative lytic... 32 7.1
CP000539_1853(CP000539|pid:none) Acidovorax sp. JS42, complete g... 32 7.1
CP000527_2(CP000527|pid:none) Desulfovibrio vulgaris subsp. vulg... 32 7.1
CP001341_589(CP001341|pid:none) Arthrobacter chlorophenolicus A6... 32 7.1
CP000884_549(CP000884|pid:none) Delftia acidovorans SPH-1, compl... 32 7.1
CP001096_1830(CP001096|pid:none) Rhodopseudomonas palustris TIE-... 32 7.1
AP008207_410(AP008207|pid:none) Oryza sativa (japonica cultivar-... 32 7.1
BX572598_101(BX572598|pid:none) Rhodopseudomonas palustris CGA00... 32 7.1
CP000239_2735(CP000239|pid:none) Synechococcus sp. JA-3-3Ab, com... 32 7.1
CP000505_1453(CP000505|pid:none) Thermofilum pendens Hrk 5, comp... 32 7.1
CP000117_4539(CP000117|pid:none) Anabaena variabilis ATCC 29413,... 32 7.1
CP001037_281(CP001037|pid:none) Nostoc punctiforme PCC 73102, co... 32 7.1
CP001147_750(CP001147|pid:none) Thermodesulfovibrio yellowstonii... 32 7.1
CP000806_2688(CP000806|pid:none) Cyanothece sp. ATCC 51142 circu... 32 7.1
EU965711_1(EU965711|pid:none) Zea mays clone 288188 hypothetical... 32 7.1
CP001392_1700(CP001392|pid:none) Diaphorobacter sp. TPSY, comple... 32 7.1
CP000616_194(CP000616|pid:none) Burkholderia vietnamiensis G4 ch... 32 9.3
CP000854_4855(CP000854|pid:none) Mycobacterium marinum M, comple... 32 9.3
BT039738_1(BT039738|pid:none) Zea mays full-length cDNA clone ZM... 32 9.3
CP000559_307(CP000559|pid:none) Methanocorpusculum labreanum Z, ... 32 9.3
CP000113_3860(CP000113|pid:none) Myxococcus xanthus DK 1622, com... 32 9.3
CP000089_3141(CP000089|pid:none) Dechloromonas aromatica RCB, co... 32 9.3
AY814092_1(AY814092|pid:none) Schistosoma japonicum SJCHGC02251 ... 32 9.3
(Q662I6) RecName: Full=tRNA uridine 5-carboxymethylaminomethyl m... 32 9.3
AP009153_3857(AP009153|pid:none) Gemmatimonas aurantiaca T-27 DN... 32 9.3
CT573073_556(CT573073|pid:none) Kuenenia stuttgartiensis genome ... 32 9.3
CP001147_1749(CP001147|pid:none) Thermodesulfovibrio yellowstoni... 32 9.3
CP000492_691(CP000492|pid:none) Chlorobium phaeobacteroides DSM ... 32 9.3
EU965978_1(EU965978|pid:none) Zea mays clone 290518 fiber protei... 32 9.3
CP001576_446(CP001576|pid:none) Micromonas sp. RCC299 chromosome... 32 9.3
CP000099_808(CP000099|pid:none) Methanosarcina barkeri str. Fusa... 32 9.3
CP000425_865(CP000425|pid:none) Lactococcus lactis subsp. cremor... 32 9.3
CP000806_1202(CP000806|pid:none) Cyanothece sp. ATCC 51142 circu... 32 9.3

>AC115588_1(AC115588|pid:none) Dictyostelium discoideum chromosome 2
map complement(5515123-5500836) strain AX4, complete
sequence.
Length = 170

Score = 177 bits (449), Expect = 1e-43
Identities = 93/123 (75%), Positives = 94/123 (76%)
Frame = +2

Query: 2 PIDSSPIAKXVIXXFSGVPDLVAPVXXKXARXXXIXXXXHXKXNAXXEXHYFXNXNFXND 181
PIDSS IAK VI FSGVPDLV P K A+ I H K NA E HYF N N ND
Sbjct: 48 PIDSSTIAKMVIEMFSGVPDLVDPDEEKLAKNEQIINSNHKKVNALEEFHYFNNKNLSND 107

Query: 182 KCKXHYLLVASNDISGXITDVANKYGINCVVLGSTGTSLEKLLIGSVSSKVXRXSHCSVL 361
KCK HYLLVASNDISG ITDVANKYGINCVVLGSTGTSLEKLLIGSVSSKV R SHCSVL
Sbjct: 108 KCKIHYLLVASNDISGSITDVANKYGINCVVLGSTGTSLEKLLIGSVSSKVLRTSHCSVL 167

Query: 362 ISP 370
ISP
Sbjct: 168 ISP 170

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3268448
Number of Hits to DB: 414,449,938
Number of extensions: 6411913
Number of successful extensions: 11331
Number of sequences better than 10.0: 254
Number of HSP's gapped: 11305
Number of HSP's successfully gapped: 255
Length of query: 155
Length of database: 1,061,185,681
Length adjustment: 116
Effective length of query: 39
Effective length of database: 682,045,713
Effective search space: 26599782807
Effective search space used: 26599782807
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 29 (15.8 bits)

PSORT

psg: 0.90 gvh: 0.47 alm: 0.42 top: 0.53 tms: 0.00 mit: 0.18 mip: 0.06
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

56.0 %: cytoplasmic
20.0 %: nuclear
8.0 %: cytoskeletal
4.0 %: mitochondrial
4.0 %: vacuolar
4.0 %: vesicles of secretory system
4.0 %: endoplasmic reticulum

>> prediction for Contig-U04715-1 is cyt

VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 1
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0