Contig-U04682-1
Contig ID Contig-U04682-1
Contig update 2001. 8.29
Contig sequence
>Contig-U04682-1 (Contig-U04682-1Q) /CSM_Contig/Contig-U04682-1Q.Seq.d
GGTGGTAATAGTCATCATCAATATCATGTTGGTGGTAGCAATGTTAATGT
TGGAATGAAGAGAAAATCGACTTCATCAAACAATACTGGAAATTATATCT
CATCATATATGTCGAATAGTAATGGTGTGGTAAATTATAATACAATGCCA
ATGGTAGTAACATCTAATCAAACTTCAACAACAACAACAACAGCAACAAT
GATGATGACAAGTGGAGGCTGTGCAAAATGTGGCGGTAAAAAAAGACATT
CTAAAACATGTATATATAGAAGAAATGATGATGATGATGCAATTGTACNA
NNAAAAGATGTAATACAAAGATTGGATGTCGCAGCTTTGAAAAGATATAA
AAAACATTATAGATTAAAAACTAAACACAACTCATCAAAAGCGGAACTTG
CAAGTATTGTAAGATCACATTTTGACGGACTTCCAGTAAATGAAGGTGAA
ATCATCGAAAATTTTATGGTTAAAGTTAAAAAAATGGTTTAATTTTTTTT
TTTTTTCTCTTTTAAAAAAA

Gap no gap
Contig length 520
Chromosome number (1..6, M) 4
Chromosome length 5430582
Start point 1231457
End point 1231977
Strand (PLUS/MINUS) PLUS
Number of clones 1
Number of EST 1
Link to clone list U04682
List of clone(s)

est1=SSC284F,1,521
Translated Amino Acid sequence
GGNSHHQYHVGGSNVNVGMKRKSTSSNNTGNYISSYMSNSNGVVNYNTMPMVVTSNQTST
TTTTATMMMTSGGCAKCGGKKRHSKTCIYRRNDDDDAIVXXKDVIQRLDVAALKRYKKHY
RLKTKHNSSKAELASIVRSHFDGLPVNEGEIIENFMVKVKKMV*fffffsfkk


Translated Amino Acid sequence (All Frames)
Frame A:
GGNSHHQYHVGGSNVNVGMKRKSTSSNNTGNYISSYMSNSNGVVNYNTMPMVVTSNQTST
TTTTATMMMTSGGCAKCGGKKRHSKTCIYRRNDDDDAIVXXKDVIQRLDVAALKRYKKHY
RLKTKHNSSKAELASIVRSHFDGLPVNEGEIIENFMVKVKKMV*fffffsfkk


Frame B:
vviviinimlvvamlmle*renrlhqtileiishhicrivmvw*iiiqcqw**hliklqq
qqqqqq***qveavqnvavkkdilkhvyieemmmmmqlyxxkm*ykdwmsql*kdiknii
d*klntthqkrnlqvl*dhiltdfq*mkvksskilwlklkkwfnffffsllkk


Frame C:
w**sssiscww*qc*cwneekidfikqywklyliiyve**wcgkl*ynangsni*snfnn
nnnsnndddkwrlckmwr*kktf*nmyi*kk****cnctxkrcntkigcrsfeki*ktl*
ikn*tqliksgtckyckitf*rtssk*r*nhrkfyg*s*knglifffflf*k


own update 2004. 6.10
Homology vs CSM-cDNA
Query= Contig-U04682-1 (Contig-U04682-1Q)
/CSM_Contig/Contig-U04682-1Q.Seq.d
(520 letters)

Database: CSM
6905 sequences; 5,674,871 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U04682-1 (Contig-U04682-1Q) /CSM_Contig/Conti... 492 e-139
Contig-U00143-1 (Contig-U00143-1Q) /CSM_Contig/Conti... 38 0.009
Contig-U13794-1 (Contig-U13794-1Q) /CSM_Contig/Conti... 36 0.036
Contig-U13062-1 (Contig-U13062-1Q) /CSM_Contig/Conti... 36 0.036
Contig-U12706-1 (Contig-U12706-1Q) /CSM_Contig/Conti... 36 0.036
Contig-U11697-1 (Contig-U11697-1Q) /CSM_Contig/Conti... 36 0.036
Contig-U07916-1 (Contig-U07916-1Q) /CSM_Contig/Conti... 36 0.036
Contig-U01809-1 (Contig-U01809-1Q) /CSM_Contig/Conti... 36 0.036
Contig-U01251-1 (Contig-U01251-1Q) /CSM_Contig/Conti... 36 0.036
Contig-U14385-1 (Contig-U14385-1Q) /CSM_Contig/Conti... 34 0.14

>Contig-U04682-1 (Contig-U04682-1Q) /CSM_Contig/Contig-U04682-1Q.Seq.d
Length = 520

Score = 492 bits (248), Expect = e-139
Identities = 271/278 (97%)
Strand = Plus / Plus


Query: 200 tgatgatgacaagtggaggctgtgcaaaatgtggcggtnnnnnnngacattctaaaacat 259
|||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 200 tgatgatgacaagtggaggctgtgcaaaatgtggcggtaaaaaaagacattctaaaacat 259


Query: 260 gtatatatagaagaaatgatgatgatgatgcaattgtacnannaaaagatgtaatacaaa 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 gtatatatagaagaaatgatgatgatgatgcaattgtacnannaaaagatgtaatacaaa 319


Query: 320 gattggatgtcgcagctttgaaaagatataaaaaacattatagattaaaaactaaacaca 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 gattggatgtcgcagctttgaaaagatataaaaaacattatagattaaaaactaaacaca 379


Query: 380 actcatcaaaagcggaacttgcaagtattgtaagatcacattttgacggacttccagtaa 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 actcatcaaaagcggaacttgcaagtattgtaagatcacattttgacggacttccagtaa 439


Query: 440 atgaaggtgaaatcatcgaaaattttatggttaaagtt 477
||||||||||||||||||||||||||||||||||||||
Sbjct: 440 atgaaggtgaaatcatcgaaaattttatggttaaagtt 477


Score = 347 bits (175), Expect = 7e-96
Identities = 175/175 (100%)
Strand = Plus / Plus


Query: 1 ggtggtaatagtcatcatcaatatcatgttggtggtagcaatgttaatgttggaatgaag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggtggtaatagtcatcatcaatatcatgttggtggtagcaatgttaatgttggaatgaag 60


Query: 61 agaaaatcgacttcatcaaacaatactggaaattatatctcatcatatatgtcgaatagt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 agaaaatcgacttcatcaaacaatactggaaattatatctcatcatatatgtcgaatagt 120


Query: 121 aatggtgtggtaaattataatacaatgccaatggtagtaacatctaatcaaactt 175
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 aatggtgtggtaaattataatacaatgccaatggtagtaacatctaatcaaactt 175


>Contig-U00143-1 (Contig-U00143-1Q) /CSM_Contig/Contig-U00143-1Q.Seq.d
Length = 1358

Score = 38.2 bits (19), Expect = 0.009
Identities = 22/23 (95%)
Strand = Plus / Plus


Query: 275 atgatgatgatgatgcaattgta 297
||||||||||||||| |||||||
Sbjct: 838 atgatgatgatgatgaaattgta 860


Score = 34.2 bits (17), Expect = 0.14
Identities = 17/17 (100%)
Strand = Plus / Plus


Query: 273 aaatgatgatgatgatg 289
|||||||||||||||||
Sbjct: 830 aaatgatgatgatgatg 846


Score = 30.2 bits (15), Expect = 2.2
Identities = 15/15 (100%)
Strand = Plus / Plus


Query: 275 atgatgatgatgatg 289
|||||||||||||||
Sbjct: 835 atgatgatgatgatg 849


>Contig-U13794-1 (Contig-U13794-1Q) /CSM_Contig/Contig-U13794-1Q.Seq.d
Length = 990

Score = 36.2 bits (18), Expect = 0.036
Identities = 18/18 (100%)
Strand = Plus / Plus


Query: 268 agaagaaatgatgatgat 285
||||||||||||||||||
Sbjct: 905 agaagaaatgatgatgat 922


Database: CSM
Posted date: Jun 9, 2004 7:35 PM
Number of letters in database: 5,674,871
Number of sequences in database: 6905

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7354
Number of Sequences: 6905
Number of extensions: 7354
Number of successful extensions: 1932
Number of sequences better than 10.0: 494
length of query: 520
length of database: 5,674,871
effective HSP length: 16
effective length of query: 504
effective length of database: 5,564,391
effective search space: 2804453064
effective search space used: 2804453064
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)
dna update 2009. 6.28
Homology vs DNA
Query= Contig-U04682-1 (Contig-U04682-1Q) /CSM_Contig/Contig-U04682-1Q.Seq.d
(520 letters)

Database: ddbj_A
102,105,510 sequences; 101,790,757,118 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(AU071692) Dictyostelium discoideum slug cDNA, clone SSC284. 347 e-107 2
(AC190096) Dasypus novemcinctus clone VMRC5-320B19, WORKING ... 46 0.024 2
(BU573158) PA__Ea0003A12f Almond developing seed Prunus dulc... 32 0.11 3
(CR855180) Oryza sativa genomic DNA, chromosome 4, BAC clone... 42 0.26 2
(AL606441) Oryza sativa genomic DNA, chromosome 4, BAC clone... 42 0.71 3
(AP000740) Arabidopsis thaliana genomic DNA, chromosome 3, P... 44 1.0 3
(AC090685) Homo sapiens chromosome 17, clone RP11-252O24, co... 36 1.1 4
(CU694753) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 38 1.3 3
(AC183477) Dasypus novemcinctus clone VMRC5-135A12, WORKING ... 46 1.3 1
(AE015450) Mycoplasma gallisepticum strain R complete genome. 46 1.3 1
(AC179422) Strongylocentrotus purpuratus clone R3-62K1, WORK... 38 1.9 3
(ER630507) 1093018422794 Global-Ocean-Sampling_GS-36-01-01-2... 38 2.1 2
(AC180363) Strongylocentrotus purpuratus clone R3-3115F21, W... 38 2.4 4
(AC144702) Danio rerio clone CH211-138D14, complete sequence. 32 2.6 2
(AC176652) Strongylocentrotus purpuratus clone R3-3080O09, W... 34 2.6 7
(BX323995) Zebrafish DNA sequence from clone RP71-86K19 in l... 32 2.6 2
(CR936835) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 32 2.6 2
(CR382398) Plasmodium falciparum chromosome 6, complete sequ... 32 3.1 8
(AL928870) Zebrafish DNA sequence from clone CH211-237D5 in ... 42 3.7 3
(AC181632) Strongylocentrotus purpuratus clone R3-1105A22, W... 34 4.0 5
(CU074418) Zebrafish DNA sequence from clone CH73-20D8 in li... 44 4.4 2
(AC230419) Bos taurus clone CH240-509L19, WORKING DRAFT SEQU... 34 4.5 4
(CR735106) Zebrafish DNA sequence from clone CH211-232N15 in... 44 5.2 1
(CR381570) Zebrafish DNA sequence from clone CH211-74M13 in ... 44 5.2 1
(AL928800) Zebrafish DNA sequence from clone CH211-233G21 in... 44 5.2 1
(AL808129) Zebrafish DNA sequence from clone CH211-255F14 in... 44 5.2 1
(BN000872) TPA: Mus musculus immunoglobulin heavy chain vari... 44 5.2 1
(AC162906) Mus musculus BAC clone RP24-282L18 from chromosom... 44 5.2 1
(AC090843) Mus musculus strain C57BL/6J clone RP23-31P8, com... 44 5.2 1
(BS000107) Pan troglodytes chromosome 22 clone:PTB-020H02, m... 44 5.2 1
(AC215930) MACACA MULATTA BAC clone CH250-18A4 from chromoso... 44 5.2 1
(AM477873) Vitis vinifera contig VV78X006995.8, whole genome... 44 5.2 1
(AM453182) Vitis vinifera contig VV78X188437.6, whole genome... 44 5.2 1
(AM444241) Vitis vinifera contig VV78X064266.5, whole genome... 44 5.2 1
(AM428985) Vitis vinifera contig VV78X099007.4, whole genome... 44 5.2 1
(AC198922) Populus trichocarpa clone Pop1-54I9, complete seq... 44 5.2 1
(AC167921) Mycosphaerella graminicola clone JGIBBWB-5J17, co... 44 5.2 1
(AC149808) Medicago truncatula clone mth2-154g23, complete s... 44 5.2 1
(AC023754) Arabidopsis thaliana chromosome I BAC F1B16 genom... 44 5.2 1
(AC006434) Genomic sequence for Arabidopsis thaliana BAC F10... 44 5.2 1
(EA246886) Sequence 69 from patent US 7226911. 44 5.2 1
(CS796911) Sequence 5 from Patent WO2007089334. 44 5.2 1
(BD306945) Novel hair keratin-associated-protein. 44 5.2 1
(GM714537) Sequence 5 from Patent WO2008095126. 44 5.2 1
(DQ141110) Drosophila willistoni Dscam gene, partial sequence. 44 5.2 1
(AF043702) Caenorhabditis elegans cosmid W03D8, complete seq... 44 5.2 1
(AP001709) Homo sapiens genomic DNA, chromosome 21q, section... 44 5.2 1
(AP000243) Homo sapiens genomic DNA, chromosome 21q22.1, D21... 44 5.2 1
(AP000204) Homo sapiens genomic DNA, chromosome 21q22.1, D21... 44 5.2 1
(AL354706) Human DNA sequence from clone RP11-229I7 on chrom... 44 5.2 1
(FP015849) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 44 5.2 1
(CU633257) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 5.2 1
(AC094511) Rattus norvegicus clone CH230-4K12, WORKING DRAFT... 44 5.2 1
(CR376841) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 44 5.2 1
(AC216738) Macaca mulatta chromosome UNKNOWN clone CH250-386... 44 5.2 1
(AC214617) Macaca mulatta clone CH250-236H9, WORKING DRAFT S... 44 5.2 1
(AC205957) Canis lupus familiaris clone XX-224B16, *** SEQUE... 44 5.2 1
(AC006893) Caenorhabditis elegans clone Y71F9, *** SEQUENCIN... 44 5.2 1
(AY198884) AY198884 Arabidopsis thaliana Landsberg erecta DN... 44 5.2 1
(DX435423) BE1093_H18_R IASMA L1 HindIII BAC library Vitis v... 44 5.2 1
(AJ553508) Arabidopsis thaliana T-DNA flanking sequence, lef... 44 5.2 1
(CZ673606) OM__Ba0229P22.f OM__Ba Oryza minuta genomic clone... 44 5.2 1
(CW319073) 104_811_11474291_116_35880_040 Sorghum methylatio... 44 5.2 1
(CW313124) 104_803_11471123_116_35786_044 Sorghum methylatio... 44 5.2 1
(CW038193) 104_270_10504786_115_30386 Sorghum methylation fi... 44 5.2 1
(CW038192) 104_270_10504786_114_30385 Sorghum methylation fi... 44 5.2 1
(CT522164) A BAC library has been constructed from cultivar ... 44 5.2 1
(CT486412) A BAC library has been constructed from cultivar ... 44 5.2 1
(CL979361) OsIFCC033126 Oryza sativa Express Library Oryza s... 44 5.2 1
(CE340230) tigr-gss-dog-17000334079051 Dog Library Canis lup... 44 5.2 1
(CC201751) CH261-30H1_Sp6.1 CH261 Gallus gallus genomic clon... 44 5.2 1
(BZ385341) SALK_137123.45.65.x Arabidopsis thaliana TDNA ins... 44 5.2 1
(BZ359002) SALK_133646.48.55.x Arabidopsis thaliana TDNA ins... 44 5.2 1
(BZ291544) SALK_120897.44.60.x Arabidopsis thaliana TDNA ins... 44 5.2 1
(BZ017963) oeh08f12.b1 B.oleracea002 Brassica oleracea genom... 44 5.2 1
(BH615156) BMBAC324H04T7_BaNG Brugia malayi Genomic Bac Libr... 44 5.2 1
(EL391715) CFFM3273.b1_A04.ab1 CFF(LMS) safflower Carthamus ... 44 5.2 1
(DW068909) CLLY8701.b2_I16.ab1 CLL(XYZ) lettuce saligna Lact... 44 5.2 1
(DW062038) CLLY1676.b1_H11.ab1 CLL(XYZ) lettuce saligna Lact... 44 5.2 1
(AM857022) Crassostrea gigas EST, 5' end sequence, clone cDN... 44 5.2 1
(FK927524) EST_lsal_evj_959860 lsalevj mixed_tissue_mixed_st... 44 5.2 1
(ES449321) ACF01_G12 Onion immature floral cDNA library Alli... 44 5.2 1
(ES449307) ACF01_F09 Onion immature floral cDNA library Alli... 44 5.2 1
(AL111168) Campylobacter jejuni subsp. jejuni NCTC 11168 com... 44 5.2 1
(AP010206) Lotus japonicus genomic DNA, chromosome 5, clone:... 36 5.4 3
(AM054758) Isotricha prostoma EST, clone Ip05_C11. 38 5.7 2
(AC177967) Strongylocentrotus purpuratus clone R3-3049K3, WO... 38 6.2 5
(AC178170) Strongylocentrotus purpuratus clone R3-3081N8, WO... 40 6.5 4
(AC180403) Strongylocentrotus purpuratus clone R3-3111C02, W... 36 6.5 3
(AC179224) Strongylocentrotus purpuratus clone R3-1107A21, W... 34 7.1 4
(AC216596) Populus trichocarpa clone POP019-I06, complete se... 38 7.7 3
(CU234119) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 36 8.1 6
(AQ027615) CIT-HSP-2322P10.TF CIT-HSP Homo sapiens genomic c... 38 8.2 2
(BX248418) Zebrafish DNA sequence from clone DKEY-181I3 in l... 40 8.3 4
(EK326375) 1095467008163 Global-Ocean-Sampling_GS-31-01-01-1... 34 9.5 2
(AC206053) Pan troglodytes BAC clone CH251-169M14 from chrom... 32 9.5 2
(AL109931) Human DNA sequence from clone RP4-719K3 on chromo... 32 9.9 2

>(AU071692) Dictyostelium discoideum slug cDNA, clone SSC284.
Length = 240

Score = 347 bits (175), Expect(2) = e-107
Identities = 175/175 (100%)
Strand = Plus / Plus


Query: 1 ggtggtaatagtcatcatcaatatcatgttggtggtagcaatgttaatgttggaatgaag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggtggtaatagtcatcatcaatatcatgttggtggtagcaatgttaatgttggaatgaag 60


Query: 61 agaaaatcgacttcatcaaacaatactggaaattatatctcatcatatatgtcgaatagt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 agaaaatcgacttcatcaaacaatactggaaattatatctcatcatatatgtcgaatagt 120


Query: 121 aatggtgtggtaaattataatacaatgccaatggtagtaacatctaatcaaactt 175
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 aatggtgtggtaaattataatacaatgccaatggtagtaacatctaatcaaactt 175

Score = 75.8 bits (38), Expect(2) = e-107
Identities = 38/38 (100%)
Strand = Plus / Plus


Query: 200 tgatgatgacaagtggaggctgtgcaaaatgtggcggt 237
||||||||||||||||||||||||||||||||||||||
Sbjct: 200 tgatgatgacaagtggaggctgtgcaaaatgtggcggt 237

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 102105510
Number of Hits to DB: 622,563,884
Number of extensions: 38991856
Number of successful extensions: 4412224
Number of sequences better than 10.0: 97
Length of query: 520
Length of database: 101,790,757,118
Length adjustment: 23
Effective length of query: 497
Effective length of database: 99,442,330,388
Effective search space: 49422838202836
Effective search space used: 49422838202836
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)

protein update 2009. 7.30
Homology vs Protein
Query= Contig-U04682-1 (Contig-U04682-1Q) /CSM_Contig/Contig-U04682-1Q.Seq.d
(520 letters)

Database: nrp_A
3,268,448 sequences; 1,061,185,681 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

BC094930_1(BC094930|pid:none) Mus musculus SAP30-like, mRNA (cDN... 50 3e-05
BT059775_1(BT059775|pid:none) Salmo salar clone ssal-rgf-505-012... 50 3e-05
(Q9HAJ7) RecName: Full=Histone deacetylase complex subunit SAP30... 50 3e-05
BC161510_1(BC161510|pid:none) Xenopus tropicalis hypothetical pr... 47 2e-04
(O88574) RecName: Full=Histone deacetylase complex subunit SAP30... 47 3e-04
(O75446) RecName: Full=Histone deacetylase complex subunit SAP30... 47 4e-04
(Q7PXY4) RecName: Full=Histone deacetylase complex subunit SAP30... 45 8e-04
CR760505_1(CR760505|pid:none) Xenopus tropicalis finished cDNA, ... 45 0.001
BC082206_1(BC082206|pid:none) Xenopus laevis MGC99111 protein, m... 45 0.001
BC170580_1(BC170580|pid:none) Xenopus tropicalis sin3-associated... 45 0.001
AK340849_1(AK340849|pid:none) Acyrthosiphon pisum ACYPI009823 mR... 43 0.005
(Q17Q39) RecName: Full=Histone deacetylase complex subunit SAP30... 43 0.005
BT083759_1(BT083759|pid:none) Zea mays full-length cDNA clone ZM... 34 2.5
AP008216_420(AP008216|pid:none) Oryza sativa (japonica cultivar-... 34 2.5
BT062755_1(BT062755|pid:none) Zea mays full-length cDNA clone ZM... 34 2.5
BT040282_1(BT040282|pid:none) Zea mays full-length cDNA clone ZM... 34 2.5
AL844509_431(AL844509|pid:none) Plasmodium falciparum 3D7 chromo... 34 2.5
BC044334_1(BC044334|pid:none) Xenopus laevis Histone deacetylase... 33 3.2
FB801940_1(FB801940|pid:none) Sequence 21213 from Patent WO20080... 33 5.5
AB210490_1(AB210490|pid:none) Ciona intestinalis mRNA for transc... 32 7.2
AE014187_535(AE014187|pid:none) Plasmodium falciparum 3D7 chromo... 32 7.2
(Q54PB4) RecName: Full=Probable myosin light chain kinase DDB_G0... 32 7.2
CR382127_91(CR382127|pid:none) Yarrowia lipolytica strain CLIB12... 32 9.4
(Q54R73) RecName: Full=Uncharacterized protein DDB_G0283357; 32 9.4

>BC094930_1(BC094930|pid:none) Mus musculus SAP30-like, mRNA (cDNA
clone IMAGE:6436029), partial cds.
Length = 240

Score = 50.1 bits (118), Expect = 3e-05
Identities = 22/46 (47%), Positives = 32/46 (69%)
Frame = +1

Query: 319 RLDVAALKRYKKHYRLKTKHNSSKAELASIVRSHFDGLPVNEGEII 456
+L V L+RYK+HY+L+T+ +KA+LA V HF +PVNE E +
Sbjct: 170 QLQVNTLRRYKRHYKLQTRPGFNKAQLAETVSRHFRNIPVNEKETL 215

Lambda K H
0.313 0.128 0.377

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3268448
Number of Hits to DB: 583,417,879
Number of extensions: 8330345
Number of successful extensions: 29076
Number of sequences better than 10.0: 24
Number of HSP's gapped: 28502
Number of HSP's successfully gapped: 24
Length of query: 173
Length of database: 1,061,185,681
Length adjustment: 120
Effective length of query: 53
Effective length of database: 668,971,921
Effective search space: 35455511813
Effective search space used: 35455511813
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 30 (16.2 bits)

PSORT

psg: 0.77 gvh: 0.37 alm: 0.47 top: 0.53 tms: 0.00 mit: 0.51 mip: 0.15
nuc: 0.02 erl: 0.00 erm: 0.40 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

72.0 %: mitochondrial
16.0 %: cytoplasmic
8.0 %: nuclear
4.0 %: cytoskeletal

>> prediction for Contig-U04682-1 is mit

VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 1
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0