Contig-U04682-1 |
Contig ID |
Contig-U04682-1 |
Contig update |
2001. 8.29 |
Contig sequence |
|
Gap |
no gap |
Contig length |
520 |
Chromosome number (1..6, M) |
4 |
Chromosome length |
5430582 |
Start point |
1231457 |
End point |
1231977 |
Strand (PLUS/MINUS) |
PLUS |
Number of clones |
1 |
Number of EST |
1 |
Link to clone list |
U04682 |
List of clone(s) |
|
Translated Amino Acid sequence |
|
Translated Amino Acid sequence (All Frames) |
|
own update |
2004. 6.10 |
Homology vs CSM-cDNA |
|
dna update |
2009. 6.28 |
Homology vs DNA |
Query= Contig-U04682-1 (Contig-U04682-1Q) /CSM_Contig/Contig-U04682-1Q.Seq.d (520 letters)
Database: ddbj_A 102,105,510 sequences; 101,790,757,118 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value N
(AU071692) Dictyostelium discoideum slug cDNA, clone SSC284. 347 e-107 2 (AC190096) Dasypus novemcinctus clone VMRC5-320B19, WORKING ... 46 0.024 2 (BU573158) PA__Ea0003A12f Almond developing seed Prunus dulc... 32 0.11 3 (CR855180) Oryza sativa genomic DNA, chromosome 4, BAC clone... 42 0.26 2 (AL606441) Oryza sativa genomic DNA, chromosome 4, BAC clone... 42 0.71 3 (AP000740) Arabidopsis thaliana genomic DNA, chromosome 3, P... 44 1.0 3 (AC090685) Homo sapiens chromosome 17, clone RP11-252O24, co... 36 1.1 4 (CU694753) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 38 1.3 3 (AC183477) Dasypus novemcinctus clone VMRC5-135A12, WORKING ... 46 1.3 1 (AE015450) Mycoplasma gallisepticum strain R complete genome. 46 1.3 1 (AC179422) Strongylocentrotus purpuratus clone R3-62K1, WORK... 38 1.9 3 (ER630507) 1093018422794 Global-Ocean-Sampling_GS-36-01-01-2... 38 2.1 2 (AC180363) Strongylocentrotus purpuratus clone R3-3115F21, W... 38 2.4 4 (AC144702) Danio rerio clone CH211-138D14, complete sequence. 32 2.6 2 (AC176652) Strongylocentrotus purpuratus clone R3-3080O09, W... 34 2.6 7 (BX323995) Zebrafish DNA sequence from clone RP71-86K19 in l... 32 2.6 2 (CR936835) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 32 2.6 2 (CR382398) Plasmodium falciparum chromosome 6, complete sequ... 32 3.1 8 (AL928870) Zebrafish DNA sequence from clone CH211-237D5 in ... 42 3.7 3 (AC181632) Strongylocentrotus purpuratus clone R3-1105A22, W... 34 4.0 5 (CU074418) Zebrafish DNA sequence from clone CH73-20D8 in li... 44 4.4 2 (AC230419) Bos taurus clone CH240-509L19, WORKING DRAFT SEQU... 34 4.5 4 (CR735106) Zebrafish DNA sequence from clone CH211-232N15 in... 44 5.2 1 (CR381570) Zebrafish DNA sequence from clone CH211-74M13 in ... 44 5.2 1 (AL928800) Zebrafish DNA sequence from clone CH211-233G21 in... 44 5.2 1 (AL808129) Zebrafish DNA sequence from clone CH211-255F14 in... 44 5.2 1 (BN000872) TPA: Mus musculus immunoglobulin heavy chain vari... 44 5.2 1 (AC162906) Mus musculus BAC clone RP24-282L18 from chromosom... 44 5.2 1 (AC090843) Mus musculus strain C57BL/6J clone RP23-31P8, com... 44 5.2 1 (BS000107) Pan troglodytes chromosome 22 clone:PTB-020H02, m... 44 5.2 1 (AC215930) MACACA MULATTA BAC clone CH250-18A4 from chromoso... 44 5.2 1 (AM477873) Vitis vinifera contig VV78X006995.8, whole genome... 44 5.2 1 (AM453182) Vitis vinifera contig VV78X188437.6, whole genome... 44 5.2 1 (AM444241) Vitis vinifera contig VV78X064266.5, whole genome... 44 5.2 1 (AM428985) Vitis vinifera contig VV78X099007.4, whole genome... 44 5.2 1 (AC198922) Populus trichocarpa clone Pop1-54I9, complete seq... 44 5.2 1 (AC167921) Mycosphaerella graminicola clone JGIBBWB-5J17, co... 44 5.2 1 (AC149808) Medicago truncatula clone mth2-154g23, complete s... 44 5.2 1 (AC023754) Arabidopsis thaliana chromosome I BAC F1B16 genom... 44 5.2 1 (AC006434) Genomic sequence for Arabidopsis thaliana BAC F10... 44 5.2 1 (EA246886) Sequence 69 from patent US 7226911. 44 5.2 1 (CS796911) Sequence 5 from Patent WO2007089334. 44 5.2 1 (BD306945) Novel hair keratin-associated-protein. 44 5.2 1 (GM714537) Sequence 5 from Patent WO2008095126. 44 5.2 1 (DQ141110) Drosophila willistoni Dscam gene, partial sequence. 44 5.2 1 (AF043702) Caenorhabditis elegans cosmid W03D8, complete seq... 44 5.2 1 (AP001709) Homo sapiens genomic DNA, chromosome 21q, section... 44 5.2 1 (AP000243) Homo sapiens genomic DNA, chromosome 21q22.1, D21... 44 5.2 1 (AP000204) Homo sapiens genomic DNA, chromosome 21q22.1, D21... 44 5.2 1 (AL354706) Human DNA sequence from clone RP11-229I7 on chrom... 44 5.2 1 (FP015849) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 44 5.2 1 (CU633257) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 5.2 1 (AC094511) Rattus norvegicus clone CH230-4K12, WORKING DRAFT... 44 5.2 1 (CR376841) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 44 5.2 1 (AC216738) Macaca mulatta chromosome UNKNOWN clone CH250-386... 44 5.2 1 (AC214617) Macaca mulatta clone CH250-236H9, WORKING DRAFT S... 44 5.2 1 (AC205957) Canis lupus familiaris clone XX-224B16, *** SEQUE... 44 5.2 1 (AC006893) Caenorhabditis elegans clone Y71F9, *** SEQUENCIN... 44 5.2 1 (AY198884) AY198884 Arabidopsis thaliana Landsberg erecta DN... 44 5.2 1 (DX435423) BE1093_H18_R IASMA L1 HindIII BAC library Vitis v... 44 5.2 1 (AJ553508) Arabidopsis thaliana T-DNA flanking sequence, lef... 44 5.2 1 (CZ673606) OM__Ba0229P22.f OM__Ba Oryza minuta genomic clone... 44 5.2 1 (CW319073) 104_811_11474291_116_35880_040 Sorghum methylatio... 44 5.2 1 (CW313124) 104_803_11471123_116_35786_044 Sorghum methylatio... 44 5.2 1 (CW038193) 104_270_10504786_115_30386 Sorghum methylation fi... 44 5.2 1 (CW038192) 104_270_10504786_114_30385 Sorghum methylation fi... 44 5.2 1 (CT522164) A BAC library has been constructed from cultivar ... 44 5.2 1 (CT486412) A BAC library has been constructed from cultivar ... 44 5.2 1 (CL979361) OsIFCC033126 Oryza sativa Express Library Oryza s... 44 5.2 1 (CE340230) tigr-gss-dog-17000334079051 Dog Library Canis lup... 44 5.2 1 (CC201751) CH261-30H1_Sp6.1 CH261 Gallus gallus genomic clon... 44 5.2 1 (BZ385341) SALK_137123.45.65.x Arabidopsis thaliana TDNA ins... 44 5.2 1 (BZ359002) SALK_133646.48.55.x Arabidopsis thaliana TDNA ins... 44 5.2 1 (BZ291544) SALK_120897.44.60.x Arabidopsis thaliana TDNA ins... 44 5.2 1 (BZ017963) oeh08f12.b1 B.oleracea002 Brassica oleracea genom... 44 5.2 1 (BH615156) BMBAC324H04T7_BaNG Brugia malayi Genomic Bac Libr... 44 5.2 1 (EL391715) CFFM3273.b1_A04.ab1 CFF(LMS) safflower Carthamus ... 44 5.2 1 (DW068909) CLLY8701.b2_I16.ab1 CLL(XYZ) lettuce saligna Lact... 44 5.2 1 (DW062038) CLLY1676.b1_H11.ab1 CLL(XYZ) lettuce saligna Lact... 44 5.2 1 (AM857022) Crassostrea gigas EST, 5' end sequence, clone cDN... 44 5.2 1 (FK927524) EST_lsal_evj_959860 lsalevj mixed_tissue_mixed_st... 44 5.2 1 (ES449321) ACF01_G12 Onion immature floral cDNA library Alli... 44 5.2 1 (ES449307) ACF01_F09 Onion immature floral cDNA library Alli... 44 5.2 1 (AL111168) Campylobacter jejuni subsp. jejuni NCTC 11168 com... 44 5.2 1 (AP010206) Lotus japonicus genomic DNA, chromosome 5, clone:... 36 5.4 3 (AM054758) Isotricha prostoma EST, clone Ip05_C11. 38 5.7 2 (AC177967) Strongylocentrotus purpuratus clone R3-3049K3, WO... 38 6.2 5 (AC178170) Strongylocentrotus purpuratus clone R3-3081N8, WO... 40 6.5 4 (AC180403) Strongylocentrotus purpuratus clone R3-3111C02, W... 36 6.5 3 (AC179224) Strongylocentrotus purpuratus clone R3-1107A21, W... 34 7.1 4 (AC216596) Populus trichocarpa clone POP019-I06, complete se... 38 7.7 3 (CU234119) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 36 8.1 6 (AQ027615) CIT-HSP-2322P10.TF CIT-HSP Homo sapiens genomic c... 38 8.2 2 (BX248418) Zebrafish DNA sequence from clone DKEY-181I3 in l... 40 8.3 4 (EK326375) 1095467008163 Global-Ocean-Sampling_GS-31-01-01-1... 34 9.5 2 (AC206053) Pan troglodytes BAC clone CH251-169M14 from chrom... 32 9.5 2 (AL109931) Human DNA sequence from clone RP4-719K3 on chromo... 32 9.9 2
>(AU071692) Dictyostelium discoideum slug cDNA, clone SSC284. Length = 240
Score = 347 bits (175), Expect(2) = e-107 Identities = 175/175 (100%) Strand = Plus / Plus
Query: 1 ggtggtaatagtcatcatcaatatcatgttggtggtagcaatgttaatgttggaatgaag 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 ggtggtaatagtcatcatcaatatcatgttggtggtagcaatgttaatgttggaatgaag 60
Query: 61 agaaaatcgacttcatcaaacaatactggaaattatatctcatcatatatgtcgaatagt 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61 agaaaatcgacttcatcaaacaatactggaaattatatctcatcatatatgtcgaatagt 120
Query: 121 aatggtgtggtaaattataatacaatgccaatggtagtaacatctaatcaaactt 175 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 121 aatggtgtggtaaattataatacaatgccaatggtagtaacatctaatcaaactt 175
Score = 75.8 bits (38), Expect(2) = e-107 Identities = 38/38 (100%) Strand = Plus / Plus
Query: 200 tgatgatgacaagtggaggctgtgcaaaatgtggcggt 237 |||||||||||||||||||||||||||||||||||||| Sbjct: 200 tgatgatgacaagtggaggctgtgcaaaatgtggcggt 237
Lambda K H 1.37 0.711 1.31
Matrix: blastn matrix:1 -3 Number of Sequences: 102105510 Number of Hits to DB: 622,563,884 Number of extensions: 38991856 Number of successful extensions: 4412224 Number of sequences better than 10.0: 97 Length of query: 520 Length of database: 101,790,757,118 Length adjustment: 23 Effective length of query: 497 Effective length of database: 99,442,330,388 Effective search space: 49422838202836 Effective search space used: 49422838202836 X1: 11 (21.8 bits) S2: 22 (44.1 bits)
|
protein update |
2009. 7.30 |
Homology vs Protein |
|
PSORT |
|
VS (DIR, S) |
0 |
VH (FL, L) |
0 |
VF (FL, S) |
0 |
AH (FL, L) |
0 |
AF (FL, S) |
0 |
SL (DIR, L) |
0 |
SS (DIR, S) |
1 |
SH (FL, L) |
0 |
SF (FL, S) |
0 |
CH (FL, L) |
0 |
CF (FL, S) |
0 |
FCL (DIR, L) |
0 |
FC (DIR, S) |
0 |
FC-IC (SUB) |
0 |