Contig-U04644-1 |
Contig ID |
Contig-U04644-1 |
Contig update |
2001. 8.29 |
Contig sequence |
|
Gap |
no gap |
Contig length |
236 |
Chromosome number (1..6, M) |
6 |
Chromosome length |
3595308 |
Start point |
1265300 |
End point |
1265064 |
Strand (PLUS/MINUS) |
MINUS |
Number of clones |
1 |
Number of EST |
1 |
Link to clone list |
U04644 |
List of clone(s) |
|
Translated Amino Acid sequence |
|
Translated Amino Acid sequence (All Frames) |
|
own update |
2004. 6.10 |
Homology vs CSM-cDNA |
|
dna update |
2009. 6.28 |
Homology vs DNA |
Query= Contig-U04644-1 (Contig-U04644-1Q) /CSM_Contig/Contig-U04644-1Q.Seq.d (236 letters)
Database: ddbj_A 102,105,510 sequences; 101,790,757,118 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value N
(AU071625) Dictyostelium discoideum slug cDNA, clone SSC122. 170 1e-38 1 (AL035475) Plasmodium falciparum MAL4P2. 48 0.14 1 (U66525) Dictyostelium discoideum ORFveg114 mRNA, complete cds. 46 0.57 1 (CX533998) s13dNF0NG02MJ008_321759 Methyl Jasmonate-Elicited... 46 0.57 1 (BP185498) Dugesia japonica cDNA, clone: 03583_HH, expressed... 46 0.57 1 (BE325640) NF089D04ST1F1030 Developing stem Medicago truncat... 46 0.57 1 (AC225451) Medicago truncatula clone mth2-154e9, WORKING DRA... 32 1.2 2 (CG948057) MBEKH17TFB mth2 Medicago truncatula genomic clone... 32 1.5 2 (AM477911) Vitis vinifera, whole genome shotgun sequence, co... 44 2.2 1 (AM443606) Vitis vinifera contig VV78X014117.29, whole genom... 44 2.2 1 (AM432528) Vitis vinifera contig VV78X221342.3, whole genome... 44 2.2 1 (AM423490) Vitis vinifera contig VV78X249587.4, whole genome... 44 2.2 1 (DD307196) NUCLEIC ACID AND POLYPEPTIDE SEQUENCES FROM LAWSO... 44 2.2 1 (DD307081) NUCLEIC ACID AND POLYPEPTIDE SEQUENCES FROM LAWSO... 44 2.2 1 (DD299343) NUCLEIC ACID AND POLYPEPTIDE SEQUENCES FROM LAWSO... 44 2.2 1 (CL052691) CH216-76F18_RM1.1 CH216 Xenopus (Silurana) tropic... 44 2.2 1 (EY502549) CBBP6429.rev CBBP Hirudo medicinalis hermaphrodit... 44 2.2 1 (EY484983) CBBP14303.rev CBBP Hirudo medicinalis hermaphrodi... 44 2.2 1 (AM180255) Lawsonia intracellularis PHE/MN1-00 plasmid 3. 44 2.2 1 (BX141528) Danio rerio genomic clone DKEY-95N10, genomic sur... 32 2.7 3 (AC104838) Homo sapiens chromosome 1 clone RP4-671I22, compl... 30 4.3 2 (AC206585) Homo sapiens chromosome UNK clone ABC12-49025400G... 30 4.7 2 (AC209544) Homo sapiens chromosome UNK clone ABC9-43908500B1... 30 4.7 2 (CQ752188) Sequence 38122 from Patent WO02068579. 30 5.8 2 (CR388187) Zebrafish DNA sequence from clone DKEY-109G19 in ... 42 8.8 1 (BV049902) S212P60195FA7.T0 CZECHII/Ei Mus musculus STS geno... 42 8.8 1 (AC165087) Mus musculus BAC clone RP23-198K7 from chromosome... 42 8.8 1 (CU329671) Schizosaccharomyces pombe chromosome II. 42 8.8 1 (AY063003) Arabidopsis thaliana unknown protein (At3g27640) ... 42 8.8 1 (AY035167) Arabidopsis thaliana unknown protein (At3g27640) ... 42 8.8 1 (AM482762) Vitis vinifera contig VV78X000885.34, whole genom... 42 8.8 1 (AM451364) Vitis vinifera contig VV78X256870.28, whole genom... 42 8.8 1 (AC189313) Brassica rapa subsp. pekinensis clone KBrB034N10,... 42 8.8 1 (AC150372) Medicago truncatula clone mth2-151k24, complete s... 42 8.8 1 (AB018114) Arabidopsis thaliana genomic DNA, chromosome 3, P... 42 8.8 1 (AC116986) Dictyostelium discoideum chromosome 2 map 2234041... 42 8.8 1 (AC151262) Mus musculus chromosome 17 clone RP24-393C12, ***... 42 8.8 1 (AC124082) Mus musculus chromosome 17 clone RP24-393C12 map ... 42 8.8 1 (CU463234) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 42 8.8 1 (AP008001) Lotus japonicus genomic DNA, chromosome 5, clone:... 42 8.8 1 (AP007783) Lotus japonicus genomic DNA, chromosome 3, clone:... 42 8.8 1 (AC180752) Strongylocentrotus purpuratus clone R3-3021P19, W... 42 8.8 1 (ER970365) AF__Bc0039K13r AF__Bc Aquilegia formosa genomic, ... 42 8.8 1 (ED190146) AUAC-aas93f09.b1 Ascaris suum whole genome shotgu... 42 8.8 1 (ED151291) AUAC-aat93c01.g1 Ascaris suum whole genome shotgu... 42 8.8 1 (ED123218) AUAC-aaq82c09.b1 Ascaris suum whole genome shotgu... 42 8.8 1 (ED111659) AUAC-aaz43g03.g1 Ascaris suum whole genome shotgu... 42 8.8 1 (CL466939) SAIL_1263_H12.v1 SAIL Collection Arabidopsis thal... 42 8.8 1 (CL465894) SAIL_1247_F07.v1 SAIL Collection Arabidopsis thal... 42 8.8 1 (BZ771636) mct78g03.b6 HFOSMID004 Homo sapiens genomic, geno... 42 8.8 1 (AV782255) Arabidopsis thaliana cDNA clone:RAFL04-15-K15, 3'... 42 8.8 1 (AU309060) Zinnia elegans cDNA, clone:Z19187. 42 8.8 1 (DC871054) Samia cynthia ricini cDNA, clone: I10A02NGRL0007_... 42 8.8 1 (CK466011) 937176 MARC 4PIG Sus scrofa cDNA 3', mRNA sequence. 42 8.8 1 (BM165866) EST568389 PyBS Plasmodium yoelii yoelii cDNA clon... 42 8.8 1 (BM165358) EST567881 PyBS Plasmodium yoelii yoelii cDNA clon... 42 8.8 1 (BM160796) EST563319 PyBS Plasmodium yoelii yoelii cDNA clon... 42 8.8 1 (BM159312) EST561835 PyBS Plasmodium yoelii yoelii cDNA clon... 42 8.8 1 (BE437729) SFR006.H06F990625 ITEC SFR Barley Leaf Epidermis ... 42 8.8 1 (ES614855) NGPAJ13TR NGPA Nasonia giraulti cDNA, mRNA sequence. 42 8.8 1 (CP000764) Bacillus cereus subsp. cytotoxis NVH 391-98, comp... 42 8.8 1 (AE008384) Methanosarcina mazei strain Goe1, complete genome. 42 8.8 1
>(AU071625) Dictyostelium discoideum slug cDNA, clone SSC122. Length = 237
Score = 170 bits (86), Expect = 1e-38 Identities = 86/86 (100%) Strand = Plus / Plus
Query: 1 gattgggaagtcattgataaaagatcttcttctgaagataatgaagaaaatgatgaatgg 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 gattgggaagtcattgataaaagatcttcttctgaagataatgaagaaaatgatgaatgg 60
Query: 61 ggcgcttgggaataagttttatgttg 86 |||||||||||||||||||||||||| Sbjct: 61 ggcgcttgggaataagttttatgttg 86
Lambda K H 1.37 0.711 1.31
Matrix: blastn matrix:1 -3 Number of Sequences: 102105510 Number of Hits to DB: 126,187,305 Number of extensions: 7833412 Number of successful extensions: 2251987 Number of sequences better than 10.0: 63 Length of query: 236 Length of database: 101,790,757,118 Length adjustment: 23 Effective length of query: 213 Effective length of database: 99,442,330,388 Effective search space: 21181216372644 Effective search space used: 21181216372644 X1: 11 (21.8 bits) S2: 21 (42.1 bits)
|
protein update |
2009. 7.30 |
Homology vs Protein |
|
PSORT |
|
VS (DIR, S) |
0 |
VH (FL, L) |
0 |
VF (FL, S) |
0 |
AH (FL, L) |
0 |
AF (FL, S) |
0 |
SL (DIR, L) |
0 |
SS (DIR, S) |
1 |
SH (FL, L) |
0 |
SF (FL, S) |
0 |
CH (FL, L) |
0 |
CF (FL, S) |
0 |
FCL (DIR, L) |
0 |
FC (DIR, S) |
0 |
FC-IC (SUB) |
0 |