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Dicty_cDB
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U04636-1
Contig ID Contig-U04636-1
Contig update 2001. 8.29
Contig sequence 
>Contig-U04636-1 (Contig-U04636-1Q) /CSM_Contig/Contig-U04636-1Q.Seq.d
AAATGATTATTCATCAACATTTATAAAGGATATTGGGTATGACAAAGCAA
TTGATACCCAAGATGTTTTTTTAATATGTTTAACATGTTCAATAGTATCA
TTATGTTGTAATTTTGTAATATTAATATTACAATTAATAAATTTAAAAGT
TAAAAGTAAACACAATGCATTCTTAATGTGTATTCTATCAAAAGTTGTTG
GTTTCATTTGTTTAGTATTCAATATTGGTTCTGTATTATATCTATTATCA
TTTAGACATNCGATAAAGAACTGTAATTTATTAGGAAACTGTTTAATTAC
NCCTCAAAATAGTTCAAGTAGTAGTAGTAGTAGTAGTAGCACTAGTGTCA
ATGATGATCAAGATAGTATTGGTTATAATGCAAATAGTGCATTGGAATTT
ATTGGTTCAACTGATACAACTTATTATAGACCACATTTAGGTTGGTTATT
AAATGCAATTGCTTTCTTTTTTATAGTTGGTGGTATCTCATTTCTATTTA
TACCAAAAGATAAAAAGAATAAACAAAATAAATATCAACTCATTGTTTAA
CTTTTATCACATTACTAAATAAACAATATTGTTAACTATATATTTGTAAA
Gap no gap
Contig length 600
Chromosome number (1..6, M) 1
Chromosome length 4919822
Start point 3671451
End point 3670847
Strand (PLUS/MINUS) MINUS
Number of clones 1
Number of EST 1
Link to clone list U04636
List of clone(s) 

est1=SSB887E,1,601
Translated Amino Acid sequence 
NDYSSTFIKDIGYDKAIDTQDVFLICLTCSIVSLCCNFVILILQLINLKVKSKHNAFLMC
ILSKVVGFICLVFNIGSVLYLLSFRHXIKNCNLLGNCLITPQNSSSSSSSSSSTSVNDDQ
DSIGYNANSALEFIGSTDTTYYRPHLGWLLNAIAFFFIVGGISFLFIPKDKKNKQNKYQL
IV*llshy*innivnyifv
Translated Amino Acid sequence (All Frames) 
Frame A:
k*lfiniykgywv*qsn*yprcffnmfnmfnsiiml*fcninitinkfks*k*tqcilnv
ysikscwfhlfsiqywfciisiii*txdkel*firklfnyxsk*fk*******h*cq**s
r*ywl*ck*cigiywfn*ynll*ttfrlvikcncflfyswwylisiytkr*ke*tk*ist
hcltfitllnkqyc*lyick


Frame B:
NDYSSTFIKDIGYDKAIDTQDVFLICLTCSIVSLCCNFVILILQLINLKVKSKHNAFLMC
ILSKVVGFICLVFNIGSVLYLLSFRHXIKNCNLLGNCLITPQNSSSSSSSSSSTSVNDDQ
DSIGYNANSALEFIGSTDTTYYRPHLGWLLNAIAFFFIVGGISFLFIPKDKKNKQNKYQL
IV*llshy*innivnyifv


Frame C:
miihqhl*rilgmtkqlipkmff*yv*hvq*yhyvvil*y*yyn**i*klkvntmhs*cv
fyqkllvsfv*ysilvlyyiyyhldxr*rtviy*etv*lxlkivqvvvvvvvalvsmmik
ivlvimqivhwnllvqliqliidhi*vgy*mqllsfl*lvvshfylyqkikrinkinins
lfnfyhitk*tilltiyl*
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U04636-1 (Contig-U04636-1Q)
/CSM_Contig/Contig-U04636-1Q.Seq.d
         (600 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U04636-1 (Contig-U04636-1Q) /CSM_Contig/Conti...   573  e-164
Contig-U13531-1 (Contig-U13531-1Q) /CSM_Contig/Conti...    46  4e-05
Contig-U05580-1 (Contig-U05580-1Q) /CSM_Contig/Conti...    40  0.003
Contig-U11500-1 (Contig-U11500-1Q) /CSM_Contig/Conti...    38  0.011
Contig-U09749-1 (Contig-U09749-1Q) /CSM_Contig/Conti...    38  0.011
Contig-U12084-1 (Contig-U12084-1Q) /CSM_Contig/Conti...    36  0.042
Contig-U11409-1 (Contig-U11409-1Q) /CSM_Contig/Conti...    36  0.042
Contig-U08217-1 (Contig-U08217-1Q) /CSM_Contig/Conti...    36  0.042
Contig-U04574-1 (Contig-U04574-1Q) /CSM_Contig/Conti...    36  0.042
Contig-U14896-1 (Contig-U14896-1Q) /CSM_Contig/Conti...    34  0.17

>Contig-U04636-1 (Contig-U04636-1Q) /CSM_Contig/Contig-U04636-1Q.Seq.d
          Length = 600

 Score =  573 bits (289), Expect = e-164
 Identities = 309/316 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaatgattattcatcaacatttataaaggatattgggtatgacaaagcaattgataccca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   aaatgattattcatcaacatttataaaggatattgggtatgacaaagcaattgataccca 60

                                                                       
Query: 61  agatgnnnnnnnaatatgtttaacatgttcaatagtatcattatgttgtaattttgtaat 120
           |||||       ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  agatgtttttttaatatgtttaacatgttcaatagtatcattatgttgtaattttgtaat 120

                                                                       
Query: 121 attaatattacaattaataaatttaaaagttaaaagtaaacacaatgcattcttaatgtg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 attaatattacaattaataaatttaaaagttaaaagtaaacacaatgcattcttaatgtg 180

                                                                       
Query: 181 tattctatcaaaagttgttggtttcatttgtttagtattcaatattggttctgtattata 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tattctatcaaaagttgttggtttcatttgtttagtattcaatattggttctgtattata 240

                                                                       
Query: 241 tctattatcatttagacatncgataaagaactgtaatttattaggaaactgtttaattac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tctattatcatttagacatncgataaagaactgtaatttattaggaaactgtttaattac 300

                           
Query: 301 ncctcaaaatagttca 316
           ||||||||||||||||
Sbjct: 301 ncctcaaaatagttca 316


 Score =  517 bits (261), Expect = e-147
 Identities = 261/261 (100%)
 Strand = Plus / Plus

                                                                       
Query: 340 cactagtgtcaatgatgatcaagatagtattggttataatgcaaatagtgcattggaatt 399
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 cactagtgtcaatgatgatcaagatagtattggttataatgcaaatagtgcattggaatt 399

                                                                       
Query: 400 tattggttcaactgatacaacttattatagaccacatttaggttggttattaaatgcaat 459
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 tattggttcaactgatacaacttattatagaccacatttaggttggttattaaatgcaat 459

                                                                       
Query: 460 tgctttcttttttatagttggtggtatctcatttctatttataccaaaagataaaaagaa 519
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 tgctttcttttttatagttggtggtatctcatttctatttataccaaaagataaaaagaa 519

                                                                       
Query: 520 taaacaaaataaatatcaactcattgtttaacttttatcacattactaaataaacaatat 579
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 taaacaaaataaatatcaactcattgtttaacttttatcacattactaaataaacaatat 579

                                
Query: 580 tgttaactatatatttgtaaa 600
           |||||||||||||||||||||
Sbjct: 580 tgttaactatatatttgtaaa 600


 Score = 40.1 bits (20), Expect = 0.003
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 114 ttgtaatattaatattacaa 133
           ||||||||||||||||||||
Sbjct: 133 ttgtaatattaatattacaa 114


>Contig-U13531-1 (Contig-U13531-1Q) /CSM_Contig/Contig-U13531-1Q.Seq.d
          Length = 1758

 Score = 46.1 bits (23), Expect = 4e-05
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                      
Query: 117 taatattaatattacaattaataaatt 143
           ||||| |||||||||||||||||||||
Sbjct: 288 taataataatattacaattaataaatt 314


>Contig-U05580-1 (Contig-U05580-1Q) /CSM_Contig/Contig-U05580-1Q.Seq.d
          Length = 735

 Score = 40.1 bits (20), Expect = 0.003
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 496 atttataccaaaagataaaa 515
           ||||||||||||||||||||
Sbjct: 376 atttataccaaaagataaaa 395


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 11,110
Number of Sequences: 6905
Number of extensions: 11110
Number of successful extensions: 1403
Number of sequences better than 10.0: 195
length of query: 600
length of database: 5,674,871
effective HSP length: 16
effective length of query: 584
effective length of database: 5,564,391
effective search space: 3249604344
effective search space used: 3249604344
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2009. 6.27
Homology vs DNA 
Query= Contig-U04636-1 (Contig-U04636-1Q) /CSM_Contig/Contig-U04636-1Q.Seq.d
         (600 letters)

Database: ddbj_A
           102,105,510 sequences; 101,790,757,118 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU036968) Dictyostelium discoideum slug cDNA, clone SSB887.      500   e-162  2
(AU071609) Dictyostelium discoideum slug cDNA, clone SSB887.      333   e-119  2
(AC116305) Dictyostelium discoideum chromosome 2 map 1005175...    40   0.006  11
(AE014845) Plasmodium falciparum 3D7 chromosome 12, section ...    40   0.057  8
(DX549678) GH_MBb0022G19r GH_MBb Gossypium hirsutum genomic ...    38   0.076  2
(AC149038) Medicago truncatula chromosome 7 clone mth2-29a5,...    36   0.080  6
(CR812470) Zebrafish DNA sequence from clone DKEYP-116H7 in ...    50   0.098  1
(AC212847) Populus trichocarpa clone POP041-B02, complete se...    50   0.098  1
(AC182674) Populus trichocarpa clone Pop1-27N13, complete se...    50   0.098  1
(EU494071) Scaptomyza undulata voucher 109452 NADH dehydroge...    50   0.098  1
(CU302359) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    50   0.098  1
(CR790383) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    50   0.098  1
(AI667064) fc37b11.x1 Zebrafish WashU MPIMG EST Danio rerio ...    50   0.098  1
(CP000263) Buchnera aphidicola str. Cc (Cinara cedri), compl...    38   0.14   9
(DL235902) NOVEL COMPOSITIONS AND METHODS FOR CANCER.              32   0.14   7
(DD164601) NOVEL COMPOSITIONS AND METHODS FOR CANCER.              32   0.14   7
(AX695821) Sequence 1448 from Patent WO03008583.                   32   0.14   7
(EE664952) 33486_re1440 R. filosa cDNA library Reticulomyxa ...    46   0.15   2
(FP103057) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    38   0.17   4
(CP001184) Ureaplasma urealyticum serovar 10 str. ATCC 33699...    36   0.26   12
(EU494053) Drosophila micromyia voucher 109454 NADH dehydrog...    46   0.29   2
(AC229722) Medicago truncatula clone mth2-18g18, WORKING DRA...    36   0.29   7
(DX533832) GH_MBb0048O10r GH_MBb Gossypium hirsutum genomic ...    36   0.32   2
(BA000021) Wigglesworthia glossinidia endosymbiont of Glossi...    42   0.34   9
(EU835853) Cicer arietinum voucher ICCV 10 chloroplast, comp...    48   0.39   1
(AM465992) Vitis vinifera contig VV78X190226.7, whole genome...    48   0.39   1
(AC145820) Cicer arietinum strain WR-315, cultivar clone cpc...    48   0.39   1
(AC137667) Medicago truncatula clone mth2-30h5, complete seq...    48   0.39   1
(AC135160) Medicago truncatula clone mth2-20m5, complete seq...    48   0.39   1
(AC097464) Homo sapiens BAC clone RP11-21M10 from 4, complet...    48   0.39   1
(AC225527) Medicago truncatula clone mth2-139k5, WORKING DRA...    48   0.39   1
(AC225474) Medicago truncatula clone mth2-189l10, WORKING DR...    48   0.39   1
(AC201252) Strongylocentrotus purpuratus clone R3-15N2, WORK...    48   0.39   1
(AC181886) Strongylocentrotus purpuratus clone R3-1018E18, W...    48   0.39   1
(ER988492) CAH1-24E19TV CAA1Ba Cicer arietinum genomic clone...    48   0.39   1
(EI889700) CAH1-60O16TV CAA1Ba Cicer arietinum genomic clone...    48   0.39   1
(EI887519) CAH1-52K7TV CAA1Ba Cicer arietinum genomic clone ...    48   0.39   1
(EI887285) CAH1-51M13TR CAA1Ba Cicer arietinum genomic clone...    48   0.39   1
(EI885532) CAH1-71O9TR CAA1Ba Cicer arietinum genomic clone ...    48   0.39   1
(EI885388) CAH1-70O9TR CAA1Ba Cicer arietinum genomic clone ...    48   0.39   1
(EI884926) CAH1-51J5TV CAA1Ba Cicer arietinum genomic clone ...    48   0.39   1
(EI876786) CAH1-44C14TV CAA1Ba Cicer arietinum genomic clone...    48   0.39   1
(EI876467) CAH1-46N16TV CAA1Ba Cicer arietinum genomic clone...    48   0.39   1
(EI875706) CAH1-47G16TR CAA1Ba Cicer arietinum genomic clone...    48   0.39   1
(EI874891) CAH1-43P8TV CAA1Ba Cicer arietinum genomic clone ...    48   0.39   1
(EI873702) CAH1-42A19TV CAA1Ba Cicer arietinum genomic clone...    48   0.39   1
(EI872392) CAH1-40A12TR CAA1Ba Cicer arietinum genomic clone...    48   0.39   1
(EI866701) CAH1-29J6TV CAA1Ba Cicer arietinum genomic clone ...    48   0.39   1
(EI863266) CAH1-27I18TV CAA1Ba Cicer arietinum genomic clone...    48   0.39   1
(EI863133) CAH1-31O15TR CAA1Ba Cicer arietinum genomic clone...    48   0.39   1
(EI862556) CAH1-26M22TV CAA1Ba Cicer arietinum genomic clone...    48   0.39   1
(EI861636) CAH1-25A24TV CAA1Ba Cicer arietinum genomic clone...    48   0.39   1
(EI860140) CAH1-19O10TR CAA1Ba Cicer arietinum genomic clone...    48   0.39   1
(EI859463) CAH1-12B23TR CAA1Ba Cicer arietinum genomic clone...    48   0.39   1
(EI859005) CAH1-7N4TR CAA1Ba Cicer arietinum genomic clone C...    48   0.39   1
(EI855259) CAH1-3N20TV CAA1Ba Cicer arietinum genomic clone ...    48   0.39   1
(EI854994) CAH1-14L1TV CAA1Ba Cicer arietinum genomic clone ...    48   0.39   1
(EI853803) CAH1-19O15TV CAA1Ba Cicer arietinum genomic clone...    48   0.39   1
(EI852324) CAH1-15M14TR CAA1Ba Cicer arietinum genomic clone...    48   0.39   1
(EI851080) CAH1-17K20TR CAA1Ba Cicer arietinum genomic clone...    48   0.39   1
(EI846969) CAH1-1H7TR CAA1Ba Cicer arietinum genomic clone C...    48   0.39   1
(DU800174) lv01_fp005q181 Lenti virus vector integration jun...    48   0.39   1
(CT968804) Equus caballus GSS, BAC clone CH241-49D2, SP6 end...    48   0.39   1
(CT966866) Equus caballus GSS, BAC clone CH241-43G5, SP6 end...    48   0.39   1
(DT795418) 127393962 TL1 Tribolium castaneum cDNA clone 99K1...    48   0.39   1
(DT795211) 127393987 TL1 Tribolium castaneum cDNA clone 99M7...    48   0.39   1
(DN645048) G5920.58 Exelixis Tribolium castaneum cDNA Librar...    48   0.39   1
(GE734248) CBUH3593.b1 B.anynana_wing.LCPP_2-10kb Bicyclus a...    48   0.39   1
(CU694754) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    42   0.48   4
(AE014846) Plasmodium falciparum 3D7 chromosome 12, section ...    34   0.49   9
(AM473275) Vitis vinifera contig VV78X232207.4, whole genome...    44   0.56   2
(AE014837) Plasmodium falciparum 3D7 chromosome 11 section 2...    36   0.57   8
(AC016564) Homo sapiens chromosome 5 clone CTC-538E9, comple...    32   0.62   7
(AC167380) Bos taurus clone CH240-154M19, *** SEQUENCING IN ...    38   0.63   5
(AX392735) Sequence 25 from Patent WO0212526.                      44   0.64   3
(AR707082) Sequence 25 from patent US 6933145.                     44   0.64   3
(FC723368) CBBG15249.rev CBBG Lottia gigantea 12,15,18h embr...    30   0.64   3
(FC754723) CBBI8214.rev CBBI Lottia gigantea 26h,37h,61h Lar...    30   0.66   3
(AM447583) Vitis vinifera, whole genome shotgun sequence, co...    36   0.67   4
(FC760339) CBBN12010.rev CBBN Lottia gigantea 3,4,5,6.5d Lar...    30   0.70   3
(FC580988) CAXP1485.rev CAXP Lottia gigantea from head, foot...    30   0.72   3
(FC735973) CBBH1184.rev CBBH Lottia gigantea 26h,37h,61h Lar...    30   0.72   3
(FC743754) CBBI13891.rev CBBI Lottia gigantea 26h,37h,61h La...    30   0.74   3
(FC754724) CBBI8214.fwd CBBI Lottia gigantea 26h,37h,61h Lar...    30   0.75   3
(FC723369) CBBG15249.fwd CBBG Lottia gigantea 12,15,18h embr...    30   0.78   3
(AF275271) Schizosaccharomyces octosporus mitochondrion, com...    32   0.84   6
(AC142698) Macaca mulatta clone CH250-272L6, *** SEQUENCING ...    36   0.84   2
(AC224987) Bos taurus clone CH240-469P6, WORKING DRAFT SEQUE...    46   0.91   2
(AM472996) Vitis vinifera contig VV78X172906.5, whole genome...    34   0.95   2
(AC115599) Dictyostelium discoideum chromosome 2 map 4229098...    30   0.97   8
(FH094680) CHO_OF3004xp09r1.ab1 CHO_OF3 Nicotiana tabacum ge...    34   1.1    2
(FH614006) CHO_OF4534xf08f1.ab1 CHO_OF4 Nicotiana tabacum ge...    34   1.1    2
(BB990719) Bombyx mori cDNA, clone:E_ET_MSV3_01F01_R_0, 3' e...    32   1.1    2
(CK542637) rswhb0_008284.y1 swh Bombyx mori cDNA, mRNA seque...    32   1.1    2
(CK504175) rswcc0_004813.y1 swc Bombyx mori cDNA, mRNA seque...    32   1.1    2
(AC006281) Plasmodium falciparum chromosome 12 clone PFYACB8...    38   1.1    6
(CK511897) rswdd0_008484.y1 swd Bombyx mori cDNA, mRNA seque...    32   1.1    2
(CK532746) rswga0_012687.y1 swg Bombyx mori cDNA, mRNA seque...    32   1.1    2
(DE567479) Bombyx mori genomic DNA, Fosmid clone:GBMFno211_e...    32   1.1    2
(CK531719) rswga0_009936.y1 swg Bombyx mori cDNA, mRNA seque...    32   1.1    2
(DQ103594) Capsella rubella clone BAC 8F1, complete sequence.      34   1.3    5
(CP000123) Mycoplasma capricolum subsp. capricolum ATCC 2734...    34   1.3    14
(AC090473) Homo sapiens chromosome 15 clone RP11-225A19 map ...    38   1.4    5
(BX322662) Zebrafish DNA sequence from clone CH211-222C18 in...    46   1.5    1
(AL928887) Zebrafish DNA sequence from clone CH211-136O14 in...    46   1.5    1
(AC124354) Mus musculus BAC clone RP24-481K12 from 12, compl...    46   1.5    1
(AC122832) Mus musculus BAC clone RP23-179D3 from 12, comple...    46   1.5    1
(AC117573) Mus musculus chromosome 3, clone RP23-30D1, compl...    46   1.5    1
(AC116459) Mus musculus, clone RP23-35F4, complete sequence.       46   1.5    1
(AM483903) Vitis vinifera contig VV78X216589.14, whole genom...    46   1.5    1
(AM461615) Vitis vinifera contig VV78X141138.3, whole genome...    46   1.5    1
(AM435993) Vitis vinifera contig VV78X146771.12, whole genom...    46   1.5    1
(AM434486) Vitis vinifera contig VV78X019237.3, whole genome...    46   1.5    1
(EU494065) Scaptomyza remota voucher 108519 NADH dehydrogena...    46   1.5    1
(EU494063) Drosophila waddingtoni voucher 105687 NADH dehydr...    46   1.5    1
(EU494062) Drosophila soonae voucher 109458 NADH dehydrogena...    46   1.5    1
(EU494060) Drosophila percnosoma voucher 105685 NADH dehydro...    46   1.5    1
(EU494054) Drosophila mimica voucher 109331 NADH dehydrogena...    46   1.5    1
(EU494049) Drosophila hystricosa voucher 109444 NADH dehydro...    46   1.5    1
(EU494045) Drosophila glabriapex voucher 109446 NADH dehydro...    46   1.5    1
(EU493980) Drosophila hypocausta voucher 103972 NADH dehydro...    46   1.5    1
(EU493978) Drosophila ornatifrons voucher 103966 NADH dehydr...    46   1.5    1
(AF362373) Dictyostelium discoideum histidine kinase DhkL (d...    46   1.5    1
(AC158017) Bos taurus clone CH240-159F2, WORKING DRAFT SEQUE...    46   1.5    1
(AC150796) Bos taurus clone CH240-288H21, WORKING DRAFT SEQU...    46   1.5    1
(CU927910) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    46   1.5    1
(CU468961) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    46   1.5    1
(CU459078) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    46   1.5    1
(BX927383) Mouse DNA sequence *** SEQUENCING IN PROGRESS ***...    46   1.5    1
(AP007777) Lotus japonicus genomic DNA, chromosome 1, clone:...    46   1.5    1
(AC224998) Bos taurus clone CH240-470C4, WORKING DRAFT SEQUE...    46   1.5    1
(AC184638) Strongylocentrotus purpuratus clone R3-4015H3, WO...    46   1.5    1
(AC180518) Strongylocentrotus purpuratus clone R3-3099B16, W...    46   1.5    1
(AC178077) Strongylocentrotus purpuratus clone R3-3059N23, W...    46   1.5    1
(AC174097) Strongylocentrotus purpuratus clone R3-1103L17, W...    46   1.5    1
(FI137523) MUGQ_CH252P509E12T7_CH0233_044 CHORI-252 Vervet M...    46   1.5    1
(FH577532) CHO_OF4679xc07r1.ab1 CHO_OF4 Nicotiana tabacum ge...    46   1.5    1
(FH577449) CHO_OF4679xc07f1.ab1 CHO_OF4 Nicotiana tabacum ge...    46   1.5    1
(ET915793) CHO_OF205xf07r2.ab1 CHO_OF Nicotiana tabacum geno...    46   1.5    1
(ET915763) CHO_OF205xf07r1.ab1 CHO_OF Nicotiana tabacum geno...    46   1.5    1
(EK281759) 1095462298173 Global-Ocean-Sampling_GS-31-01-01-1...    46   1.5    1
(EJ571926) 1092960050079 Global-Ocean-Sampling_GS-29-01-01-1...    46   1.5    1
(EJ551224) 1092959447690 Global-Ocean-Sampling_GS-29-01-01-1...    46   1.5    1
(EJ493649) 1095403558015 Global-Ocean-Sampling_GS-28-01-01-1...    46   1.5    1
(CZ715682) OC__Ba0039E20.f OC__Ba Oryza coarctata genomic cl...    46   1.5    1
(CK348822) hggfha5C08 Gland Cell LD PCR cDNA Library Heterod...    46   1.5    1
(BJ436471) Dictyostelium discoideum cDNA clone:ddv31d10, 3' ...    46   1.5    1
(BJ410646) Dictyostelium discoideum cDNA clone:ddv1g11, 5' e...    46   1.5    1
(BJ039296) Xenopus laevis cDNA clone:XL049a20, 5' end, singl...    46   1.5    1
(EV433611) 211376151 NVP Nasonia vitripennis cDNA clone 237K...    46   1.5    1
(AM285311) Spiroplasma citri GII3-3X chromosome, contig Cont...    36   1.6    4
(AC093215) Homo sapiens chromosome 5 clone CTD-2061A14, WORK...    34   1.6    4
(AC005495) Homo sapiens chromosome 17, clone RP11-293K20, co...    44   1.6    5
(CT573052) Medicago truncatula chromosome 5 clone mth2-60f21...    34   1.7    5
(AC102399) Mus musculus chromosome 3, clone RP24-217J3, comp...    36   1.7    6
(BX323064) Zebrafish DNA sequence from clone DKEYP-13D12 in ...    42   1.7    4
(AC040920) Homo sapiens chromosome 5 clone RP11-509M23 map 5...    38   1.8    4
(AM663947) Entamoeba moshkovskii FIC GSS, clone mosh029g06.q1k.    40   1.8    2
(AC179487) Strongylocentrotus purpuratus clone R3-64B18, WOR...    36   1.9    6
(DQ158858) Bigelowiella natans nucleomorph chromosome 3, com...    36   2.0    6
(BH615352) BMBAC302A05T7_PSU Brugia malayi Genomic Bac Libra...    32   2.0    3
(ER474850) 1092963989765 Global-Ocean-Sampling_GS-35-01-01-1...    32   2.0    3
(AL162492) Human DNA sequence *** SEQUENCING CANCELLED *** f...    36   2.2    5
(AL163051) Human chromosome 14 DNA sequence BAC R-872J21 of ...    38   2.2    4
(DQ870926) Bombus ignitus mitochondrion, complete genome.          30   2.2    5
(AC018517) Homo sapiens, clone RP11-115N12, complete sequence.     36   2.3    6
(CP000743) Methanococcus aeolicus Nankai-3, complete genome.       34   2.4    16
(FC251568) CAGH696.rev CAGH Nematostella vectensis Nemve Lat...    38   2.5    2
(CR812847) Zebrafish DNA sequence from clone DKEY-9I15 in li...    44   2.5    3
(AL929357) Plasmodium falciparum strain 3D7, chromosome 9; s...    36   2.6    10
(AM660319) Entamoeba moshkovskii FIC GSS, clone mosh098b11.q1k.    40   2.6    2
(AC079256) Homo sapiens BAC clone RP11-325I24 from 2, comple...    34   2.9    5
(CD752470) AGENCOURT_14625226 NCI_CGAP_ZEmb2 Danio rerio cDN...    40   2.9    2
(BX908797) Zebrafish DNA sequence from clone DKEY-43P13 in l...    34   3.0    2
(AC134662) Mus musculus chromosome 15, clone RP24-445D14, co...    34   3.0    2
(CU856159) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    40   3.0    4
(CR936337) Zebrafish DNA sequence from clone RP71-78K5 in li...    34   3.0    2
(AC115684) Dictyostelium discoideum chromosome 2 map 3108975...    32   3.0    6
(AL929341) Zebrafish DNA sequence from clone CH211-85N16.          36   3.5    5
(EU401918) Bombus hypocrita sapporoensis mitochondrion, part...    34   3.6    3
(AP010435) Lotus japonicus genomic DNA, chromosome 5, clone:...    36   3.6    3
(AC116925) Dictyostelium discoideum chromosome 2 map 4189423...    32   3.7    5
(AC111402) Rattus norvegicus clone CH230-119P6, *** SEQUENCI...    34   3.7    7
(AL391748) Human chromosome 14 DNA sequence BAC R-630G18 of ...    38   3.8    5
(AC232871) Medicago truncatula clone mth2-79j1, WORKING DRAF...    36   3.9    7
(DT799411) 126433200 TL1 Tribolium castaneum cDNA clone 55C5...    34   4.0    2
(AE014839) Plasmodium falciparum 3D7 chromosome 11 section 4...    34   4.0    8
(AC177116) Strongylocentrotus purpuratus clone R3-4014C8, WO...    40   4.4    3
(DX545809) GH_MBb0032H21r GH_MBb Gossypium hirsutum genomic ...    38   4.5    2
(BX323881) Zebrafish DNA sequence from clone CH211-274G13 in...    38   4.6    4
(BX784026) Zebrafish DNA sequence from clone CH211-66P13 in ...    38   4.6    7
(AC117501) Homo sapiens 12 BAC RP11-252N20 (Roswell Park Can...    36   4.7    3
(AC135505) Medicago truncatula chromosome 8 clone mth2-24j8,...    34   5.0    6
(AC174893) Bos taurus clone CH240-274L14, WORKING DRAFT SEQU...    38   5.0    4
(AC155010) Bos taurus clone CH240-35I17, WORKING DRAFT SEQUE...    40   5.2    4
(AC097485) Homo sapiens BAC clone RP11-163K17 from 4, comple...    36   5.2    3
(CR846098) Zebrafish DNA sequence *** SEQUENCING CANCELLED *...    44   5.6    5
(FP102295) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    34   5.7    7
(AC168460) Strongylocentrotus purpuratus clone R3-35H9, WORK...    42   5.7    3
(AL738416) Danio rerio genomic clone DKEY-5B24, genomic surv...    30   6.0    3
(AX348668) Sequence 126 from Patent WO0202807.                     38   6.0    3
(AX344271) Sequence 118 from Patent WO0200926.                     38   6.0    3
(CU855916) Zebrafish DNA sequence from clone CH73-44O18 in l...    44   6.1    1
(BX005261) Zebrafish DNA sequence from clone DKEY-20I6 in li...    44   6.1    1
(BX005228) Zebrafish DNA sequence from clone CH211-163M17 in...    44   6.1    1
(AF250284) Amsacta moorei entomopoxvirus, complete genome.         44   6.1    1
(BX511205) Rattus norvegicus chromosome 1 BAC RP32-120J22.         44   6.1    1
(AL731789) Mouse DNA sequence from clone RP23-52F6 on chromo...    44   6.1    1
(AC162307) Mus musculus BAC clone RP23-271I2 from chromosome...    44   6.1    1
(AC132333) Mus musculus BAC clone RP24-226I7 from chromosome...    44   6.1    1
(AC115830) Mus musculus chromosome 7, clone RP24-96A19, comp...    44   6.1    1
(AC107773) Mus musculus chromosome 18, clone RP23-102H15, co...    44   6.1    1
(CT573437) Pan troglodytes chromosome X clone PTB-152P08 map...    44   6.1    1
(AC213362) Pongo abelii BAC clone CH276-263A16 from chromoso...    44   6.1    1
(AC193036) Pan troglodytes BAC clone CH251-550E10 from chrom...    44   6.1    1
(AC169705) Rhesus Macaque  BAC CH250-174C17 (Children's Hosp...    44   6.1    1
(CU424435) M.truncatula DNA sequence from clone MTH2-64C24 o...    44   6.1    1
(AP008213) Oryza sativa (japonica cultivar-group) genomic DN...    44   6.1    1
(AP004314) Oryza sativa Japonica Group genomic DNA, chromoso...    44   6.1    1
(AP003829) Oryza sativa Japonica Group genomic DNA, chromoso...    44   6.1    1
(AM463043) Vitis vinifera contig VV78X071521.5, whole genome...    44   6.1    1
(AM443457) Vitis vinifera contig VV78X074791.6, whole genome...    44   6.1    1
(EA703097) Sequence 81976 from patent US 7365185.                  44   6.1    1
(EA676043) Sequence 54922 from patent US 7365185.                  44   6.1    1
(CS366560) Sequence 37 from Patent EP1686175.                      44   6.1    1
(AX921044) Sequence 37 from Patent WO02068652.                     44   6.1    1
(DQ874095) Pseudomops oblongata 12S ribosomal RNA gene, part...    44   6.1    1
(Z94055) Human DNA sequence from clone RP1-24M15 on chromoso...    44   6.1    1
(AP002856) Homo sapiens genomic DNA, chromosome 11 clone:RP1...    44   6.1    1
(AP002806) Homo sapiens genomic DNA, chromosome 11q, clone:R...    44   6.1    1
(AL139112) Human DNA sequence from clone GS1-103B18 on chrom...    44   6.1    1
(AC149254) Papio anubis clone RP41-215L2, WORKING DRAFT SEQU...    44   6.1    1
(AC139591) Rattus norvegicus clone CH230-19A23, WORKING DRAF...    44   6.1    1
(AC135652) Rattus norvegicus clone CH230-179N10, WORKING DRA...    44   6.1    1
(AC120624) Rattus norvegicus clone CH230-25E7, WORKING DRAFT...    44   6.1    1
(AC112310) Rattus norvegicus clone CH230-58E4, *** SEQUENCIN...    44   6.1    1
(AC110604) Homo sapiens chromosome 18 clone CTD-2222I17 map ...    44   6.1    1
(AC106441) Rattus norvegicus clone CH230-195H19, *** SEQUENC...    44   6.1    1
(AC105728) Rattus norvegicus clone CH230-47M22, *** SEQUENCI...    44   6.1    1
(AC097539) Rattus norvegicus clone CH230-9E21, *** SEQUENCIN...    44   6.1    1
(AC094758) Rattus norvegicus clone CH230-5I17, WORKING DRAFT...    44   6.1    1
(FP102180) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   6.1    1
(CU672258) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   6.1    1
(CU570953) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   6.1    1
(CU467952) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   6.1    1
(CU302387) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   6.1    1
(CU019583) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   6.1    1
(CT027642) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    44   6.1    1
(BX530720) Mouse DNA sequence *** SEQUENCING IN PROGRESS ***...    44   6.1    1
(AL607094) Oryza sativa genomic DNA, chromosome 7, BAC clone...    44   6.1    1
(AL356366) Human DNA sequence *** SEQUENCING CANCELLED *** f...    44   6.1    1
(AC221741) Bos taurus clone CH240-386O24, WORKING DRAFT SEQU...    44   6.1    1
(AC184459) Strongylocentrotus purpuratus clone R3-30E18, WOR...    44   6.1    1
(AC165707) Bos taurus clone CH240-166D21, WORKING DRAFT SEQU...    44   6.1    1
(AC023505) Homo sapiens chromosome 3 clone RP11-145N22, WORK...    44   6.1    1
(AY815304) Schistosoma japonicum SJCHGC06429 protein mRNA, c...    44   6.1    1
(FI300446) AdH1032-CPY2-J17TF AdH1 Arachis duranensis genomi...    44   6.1    1
(FH061446) CHO_OF3592xn02r1.ab1 CHO_OF3 Nicotiana tabacum ge...    44   6.1    1
(ER439401) 1092963807940 Global-Ocean-Sampling_GS-35-01-01-1...    44   6.1    1
(EK313854) 1095462406112 Global-Ocean-Sampling_GS-31-01-01-1...    44   6.1    1
(EK165158) 1095458048214 Global-Ocean-Sampling_GS-31-01-01-1...    44   6.1    1
(AL741690) Danio rerio genomic clone DKEY-21H2, genomic surv...    44   6.1    1
(EJ459126) 1093018407833 Global-Ocean-Sampling_GS-28-01-01-1...    44   6.1    1
(EJ337643) 1092963490592 Global-Ocean-Sampling_GS-28-01-01-1...    44   6.1    1
(EI893089) VUH1-79N8TV VUUBBa (VUH1) Vigna unguiculata genom...    44   6.1    1
(DU241824) 1098574193136 CHORI-243 Ovis aries genomic clone ...    44   6.1    1
(CW564964) OA_ABa0089D07.f OA_ABa Oryza australiensis genomi...    44   6.1    1
(CT141685) Sus scrofa genomic clone CH242-108P2, genomic sur...    44   6.1    1
(CR972345) Homo sapiens BAC end sequence of RZPDB737D032049D...    44   6.1    1
(CR348578) mte1-82H12RM1 BAC end, cultivar Jemalong A17 of M...    44   6.1    1
(CR333021) mte1-62P13RM1 BAC end, cultivar Jemalong A17 of M...    44   6.1    1
(CR325605) mte1-53O3FM1 BAC end, cultivar Jemalong A17 of Me...    44   6.1    1
(CR296621) mte1-13I16RM1 BAC end, cultivar Jemalong A17 of M...    44   6.1    1
(AG560758) Mus musculus molossinus DNA, clone:MSMg01-480A06....    44   6.1    1
(CG744870) P037-3-D08.za Ppa EcoRI BAC Library Pristionchus ...    44   6.1    1
(AG435258) Mus musculus molossinus DNA, clone:MSMg01-313E13....    44   6.1    1
(EG962020) AU_Ich_016D_G09 Whole organism normalized cDNA li...    44   6.1    1
(EG244597) MSAM165620_3655_1957 LCM-dissected maize inbred l...    44   6.1    1
(DW782013) MSAM156892_1272_0033 LCM-dissected maize shoot ap...    44   6.1    1
(DW282231) UI-S-HH0-adt-i-16-0-UI.s1 UI-S-HH0 Euprymna scolo...    44   6.1    1
(CX995353) JGI_CAAP14266.rev NIH_XGC_tropInt1 Xenopus (Silur...    44   6.1    1
(CX170273) H01_69-110_15.ab1 leaf inoculated with Marssonia ...    44   6.1    1
(BU774459) SJEAFC03 SJE Schistosoma japonicum cDNA, mRNA seq...    44   6.1    1
(BM652078) 17000687375066 A.Gam.ad.cDNA1 Anopheles gambiae c...    44   6.1    1
(EX162135) MW_DP0055 Dermatophagoides pteronyssinus cDNA lib...    44   6.1    1
(CP001302) Borrelia garinii PBr plasmid PBr_lp36, complete s...    44   6.1    1
(CP000084) Candidatus Pelagibacter ubique HTCC1062, complete...    44   6.1    1
(AL121653) BAC sequence from the SPG4 candidate region at 2p...    40   6.2    5
(AG280462) Mus musculus molossinus DNA, clone:MSMg01-051M22....    36   6.3    2
(CR932964) Medicago truncatula chromosome 5 clone mte1-60l18...    36   6.4    3
(AC090540) Homo sapiens chromosome 15 clone RP11-691L10 map ...    38   6.4    6
(EI418732) PV_GBa0005K17.f PV_GBa Phaseolus vulgaris genomic...    38   6.5    2
(AP005164) Oryza sativa Japonica Group genomic DNA, chromoso...    40   6.7    4
(BX198283) Danio rerio genomic clone DKEY-218J2, genomic sur...    34   6.7    2
(CZ904817) gz01b05.x1.b.screen Tomato methylation unfiltered...    32   6.9    3
(AM436270) Vitis vinifera contig VV78X147501.13, whole genom...    40   6.9    2
(DC221347) Plasmodium berghei strain ANKA cDNA clone:MZ00410...    34   6.9    3
(DX213444) OR_ABa0087B12.f OR_ABa Oryza ridleyi genomic clon...    40   6.9    2
(BX663604) Zebrafish DNA sequence from clone CH211-222K9 in ...    38   7.0    2
(AC210330) Populus trichocarpa clone POP011-J18, complete se...    36   7.0    7
(AM285325) Spiroplasma citri GII3-3X chromosome, contig Cont...    38   7.0    2
(AC153441) Bos taurus clone CH240-19A19, WORKING DRAFT SEQUE...    34   7.0    3
(BX293980) Mycoplasma mycoides subsp. mycoides SC str. PG1, ...    32   7.2    15
(AC016594) Homo sapiens chromosome 5 clone CTD-2010O3, compl...    36   7.3    5
(AL049181) Plasmodium falciparum DNA *** SEQUENCING IN PROGR...    36   7.5    7
(AC093214) Homo sapiens chromosome 5 clone CTD-2060C23, comp...    36   7.6    5
(EF494739) Blastocystis sp. DMP/02-328 mitochondrion, comple...    32   7.6    4
(AY262686) Glycine max cultivar Williams 82 BAC clone Gm_ISb...    40   7.7    5
(AC176812) Strongylocentrotus purpuratus clone R3-3109O4, WO...    38   7.7    3
(CR848747) Zebrafish DNA sequence from clone DKEYP-77H1 in l...    34   7.8    7
(AC152186) Medicago truncatula clone mth2-72c1, WORKING DRAF...    34   7.9    3
(CR382399) Plasmodium falciparum chromosome 6, complete sequ...    34   7.9    10
(AL929358) Plasmodium falciparum strain 3D7, chromosome 9; s...    32   8.1    10
(AC156303) Bos taurus clone CH240-53P10, WORKING DRAFT SEQUE...    38   8.1    4
(CR392045) Zebrafish DNA sequence from clone DKEY-167C9 in l...    36   8.3    5
(AC008467) Homo sapiens chromosome 5 clone CTC-364D2, comple...    36   8.5    5
(CU467006) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    34   8.5    6
(EJ036331) 1095454069894 Global-Ocean-Sampling_GS-26-01-01-1...    34   8.7    2
(BA000033) Staphylococcus aureus subsp. aureus MW2 DNA, comp...    32   8.8    2
(BX571857) Staphylococcus aureus strain MSSA476, complete ge...    32   8.8    2
(CV755497) sjl5-004_F06_sjl5-004F06-T7_058.ab1 SJL Schistoso...    34   8.8    2
(DH549982) Rattus norvegicus DNA, BAC clone: RNB1-057P16, 3'...    40   8.9    2
(CV755514) sjl5-004_G05_sjl5-004G05-T7_038.ab1 SJL Schistoso...    34   8.9    2
(DU612668) OO__Ba0113M01.r OO__Ba Oryza officinalis genomic ...    40   9.0    2
(EI472972) PV_GBa0082D01.r PV_GBa Phaseolus vulgaris genomic...    38   9.0    2
(EK250869) 1095460279762 Global-Ocean-Sampling_GS-31-01-01-1...    32   9.1    3
(AF437291) Saccharomyces castellii strain NRRL Y-12630 mitoc...    36   9.3    5
(CU651635) M.truncatula DNA sequence from clone MTH2-14F10 o...    36   9.3    4
(CV751714) SJL5-008_D03_SJL5-008D03-T7_027.ab1 SJL Schistoso...    34   9.3    2
(CV751867) Sjl5-010D03-T7_030.ab1 SJL Schistosoma japonicum ...    34   9.5    2
(AC087104) Danio rerio clone 20A7, complete sequence.              32   9.5    5
(AC099461) Rattus norvegicus clone CH230-174L23, WORKING DRA...    38   9.6    2
(CV751776) Sjl5-009B09-T7_073.ab1 SJL Schistosoma japonicum ...    34   9.6    2
(CU914529) S.lycopersicum DNA sequence from clone LE_HBa-304...    38   9.7    3
(CT010443) M.truncatula DNA sequence from clone MTH2-76G21 o...    34   9.8    6
(CV755633) sjl5-006_C02_sjl5-006C02-T7_006.ab1 SJL Schistoso...    34   9.9    2

>(AU036968) Dictyostelium discoideum slug cDNA, clone SSB887.
          Length = 342

 Score =  500 bits (252), Expect(2) = e-162
 Identities = 252/252 (100%)
 Strand = Plus / Plus


Query: 340 cactagtgtcaatgatgatcaagatagtattggttataatgcaaatagtgcattggaatt 399
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82  cactagtgtcaatgatgatcaagatagtattggttataatgcaaatagtgcattggaatt 141


Query: 400 tattggttcaactgatacaacttattatagaccacatttaggttggttattaaatgcaat 459
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142 tattggttcaactgatacaacttattatagaccacatttaggttggttattaaatgcaat 201


Query: 460 tgctttcttttttatagttggtggtatctcatttctatttataccaaaagataaaaagaa 519
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 tgctttcttttttatagttggtggtatctcatttctatttataccaaaagataaaaagaa 261


Query: 520 taaacaaaataaatatcaactcattgtttaacttttatcacattactaaataaacaatat 579
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 taaacaaaataaatatcaactcattgtttaacttttatcacattactaaataaacaatat 321


Query: 580 tgttaactatat 591
           ||||||||||||
Sbjct: 322 tgttaactatat 333

 Score =  105 bits (53), Expect(2) = e-162
 Identities = 55/56 (98%)
 Strand = Plus / Plus


Query: 261 cgataaagaactgtaatttattaggaaactgtttaattacncctcaaaatagttca 316
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 3   cgataaagaactgtaatttattaggaaactgtttaattacccctcaaaatagttca 58

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 102105510
Number of Hits to DB: 825,149,964
Number of extensions: 55748707
Number of successful extensions: 5036137
Number of sequences better than 10.0: 341
Length of query: 600
Length of database: 101,790,757,118
Length adjustment: 23
Effective length of query: 577
Effective length of database: 99,442,330,388
Effective search space: 57378224633876
Effective search space used: 57378224633876
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7.30
Homology vs Protein 
Query= Contig-U04636-1 (Contig-U04636-1Q) /CSM_Contig/Contig-U04636-1Q.Seq.d
         (600 letters)

Database: nrp_A
           3,268,448 sequences; 1,061,185,681 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF336365_2(AF336365|pid:none) Gibberella zeae 88-1 trichothecene...    35   1.2
AE014187_405(AE014187|pid:none) Plasmodium falciparum 3D7 chromo...    34   2.7
AP010935_912(AP010935|pid:none) Streptococcus dysgalactiae subsp...    34   3.6
BX538353_95(BX538353|pid:none) Cryptosporidium parvum chromosome...    34   3.6
AY686235_1(AY686235|pid:none) Chrysemys picta isolate PTOR9 olfa...    33   4.7
(P18015) RecName: Full=Copy number protein; AltName: Full=ORF4; ...    33   4.7
FN357390_22(FN357390|pid:none) Schistosoma mansoni genome sequen...    33   4.7
AY171199_2(AY171199|pid:none) Caenorhabditis elegans isolate CB4...    33   6.1
AL766844_39(AL766844|pid:none) Streptococcus agalactiae NEM316 c...    33   8.0

>AF336365_2(AF336365|pid:none) Gibberella zeae 88-1 trichothecene
           biosynthesis gene cluster, complete sequence.
          Length = 441

 Score = 35.4 bits (80), Expect = 1.2
 Identities = 18/56 (32%), Positives = 29/56 (51%)
 Frame = +2

Query: 68  FLICLTCSIVSLCCNFVILILQLINLKVKSKHNAFLMCILSKVVGFICLVFNIGSV 235
           F++ +T  ++  CCNF++L     N   K K       I+ KV G  CL+FN+  +
Sbjct: 76  FILGITAQLIIQCCNFLVLERLDANDLAKKKVFRSSDGIVYKVYGVACLIFNLRGI 131

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3268448
Number of Hits to DB: 742,438,042
Number of extensions: 12688456
Number of successful extensions: 30352
Number of sequences better than 10.0: 9
Number of HSP's gapped: 30339
Number of HSP's successfully gapped: 9
Length of query: 200
Length of database: 1,061,185,681
Length adjustment: 122
Effective length of query: 78
Effective length of database: 662,435,025
Effective search space: 51669931950
Effective search space used: 51669931950
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 30 (16.2 bits)
PSORT 

 psg: 0.75  gvh: 0.74  alm: 0.21  top: 0.90  tms: 0.20  mit: 0.23  mip: 0.00
 nuc: 0.06  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 1.00  m_ : 0.00 

	 32.0 %: plasma membrane
	 20.0 %: endoplasmic reticulum
	 12.0 %: nuclear
	 12.0 %: mitochondrial
	 12.0 %: vacuolar
	  4.0 %: cytoskeletal
	  4.0 %: Golgi
	  4.0 %: cytoplasmic

>> prediction for Contig-U04636-1 is pla
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 1
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0