Contig-U04633-1
Contig ID Contig-U04633-1
Contig update 2001. 8.29
Contig sequence
>Contig-U04633-1 (Contig-U04633-1Q) /CSM_Contig/Contig-U04633-1Q.Seq.d
ATTAAATATAAAAAAATAATAATAGAAAAAATATAAAATCGTCAACTATT
ATTTAAATAATAAACACATATATAAATAGATAAATAAAAGAATGAGATTA
TTTTTATTATTATTATCAATTTTCAATTTCAACTNCAACTGTGAATGCAT
TGACTTGTGAATTATGTCAATTCTCAGTTAAAGCAGCTGAAGATTTAGTT
ACACAAAATTTCACACAAAGTCAAATTATTCCTTATTTAGATTCCGCTTG
TTCACTATTACCAAATCAATGGGCTAGTAATTGTGAAATTATTGTAAATA
CCTATGGTTTATCAATGATTAAATTAGTATTAGAAAATGAAACACCAGAA
GTTGCTTGTACTCAATTAGGTCTTTGTGGGTCAAATTCATTCTTTACAGA
AACTAAAAAAGAAACTTTAGGAAAATGGCATTGGAATTAAACACCATTTT
AACTCCACTCAAGAAATTAGAATGTAGTGCTTGTCATTTTGCTGATGGTA
AAGCTGAAAATGTTGTAAATAAAGATATTAATACCGCAAGAGCATATGTT
GATGGCCAATGTGATACTTTTGCAATTAAAGAAGCTATTCATATTTGTAA
AAGAATTGTTGATAAAGAAATTGGAAGAATTATTACTGAATTAAAGAACC
ATGAAAGTAAAGAAACCGTTTGTAACGTTTGTAAACATATTCATATGTGT
TAAAACTACTTTAATTGTATATATATATAAAAAATAAATTATTTAAATAA
TTTTAAAATTGTAAAAAAAAAAAAA

Gap no gap
Contig length 775
Chromosome number (1..6, M) 2
Chromosome length 8467578
Start point 8350968
End point 8351733
Strand (PLUS/MINUS) PLUS
Number of clones 2
Number of EST 2
Link to clone list U04633
List of clone(s)

est1=SSF507E,1,753
est2=SSB874Z,409,776
Translated Amino Acid sequence
*i*knnnrkniksstii*iintyinr*ike*DYFYYYYQFSISTXTVNALTCELCQFSVK
AAEDLVTQNFTQSQIIPYLDSACSLLPNQWASNCEIIVNTYGLSMIKLVLENETPEVACT
QLGLCGSNSFFTETKKETLGKWHWN*tpf*lhsrn*nvvlvillmvklkml*ikilipqe
hmlmanvillqlkklfifvkellikkleellln*rtmkvkkpfvtfvnificvkttlivy
iykk*ii*iilkl*kkk


Translated Amino Acid sequence (All Frames)
Frame A:
ikykkiiieki*nrqllfk**thi*idk*kneiifiiiinfqfqlql*mh*lvnyvnsql
kqlki*lhkishkvklfli*iplvhyyqinglvivkll*ipmvyq*ln*y*kmkhqkllv
ln*vfvgqihslqklkkkl*engigikhhfnstqeirm*clsfc*w*s*kcck*ry*yrk
sic*wpm*yfcn*rsysyl*knc**rnwknyy*ikep*k*rnrl*rl*tysyvlkll*ly
iyiknklfk*f*nckkkk


Frame B:
lnikk***kkykivnyylnnkhiyk*inkrmrlfllllsifnfnxncecidl*imsils*
ss*rfsytkfhtksnyslfrfrlftitksmg**l*nyckylwfind*isirk*ntrscly
sirslwvkfilyrn*krnfrkmalelntiltplkklecsachfadgkaenvvnkdintar
ayvdgqcdtfaikeaihickrivdkeigriitelknhesketvcnvckhihmc*nyfnci
yi*kinylnnfkivkkkk


Frame C:
*i*knnnrkniksstii*iintyinr*ike*DYFYYYYQFSISTXTVNALTCELCQFSVK
AAEDLVTQNFTQSQIIPYLDSACSLLPNQWASNCEIIVNTYGLSMIKLVLENETPEVACT
QLGLCGSNSFFTETKKETLGKWHWN*tpf*lhsrn*nvvlvillmvklkml*ikilipqe
hmlmanvillqlkklfifvkellikkleellln*rtmkvkkpfvtfvnificvkttlivy
iykk*ii*iilkl*kkk


own update 2004. 6.10
Homology vs CSM-cDNA
Query= Contig-U04633-1 (Contig-U04633-1Q)
/CSM_Contig/Contig-U04633-1Q.Seq.d
(775 letters)

Database: CSM
6905 sequences; 5,674,871 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U04633-1 (Contig-U04633-1Q) /CSM_Contig/Conti... 1322 0.0
Contig-U14591-1 (Contig-U14591-1Q) /CSM_Contig/Conti... 46 6e-05
Contig-U02933-1 (Contig-U02933-1Q) /CSM_Contig/Conti... 46 6e-05
Contig-U12182-1 (Contig-U12182-1Q) /CSM_Contig/Conti... 44 2e-04
Contig-U11586-1 (Contig-U11586-1Q) /CSM_Contig/Conti... 44 2e-04
Contig-U12706-1 (Contig-U12706-1Q) /CSM_Contig/Conti... 42 9e-04
Contig-U12231-1 (Contig-U12231-1Q) /CSM_Contig/Conti... 42 9e-04
Contig-U11525-1 (Contig-U11525-1Q) /CSM_Contig/Conti... 42 9e-04
Contig-U11305-1 (Contig-U11305-1Q) /CSM_Contig/Conti... 42 9e-04
Contig-U06464-1 (Contig-U06464-1Q) /CSM_Contig/Conti... 40 0.003

>Contig-U04633-1 (Contig-U04633-1Q) /CSM_Contig/Contig-U04633-1Q.Seq.d
Length = 775

Score = 1322 bits (667), Expect = 0.0
Identities = 670/670 (100%)
Strand = Plus / Plus


Query: 40 cgtcaactattatttaaataataaacacatatataaatagataaataaaagaatgagatt 99
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40 cgtcaactattatttaaataataaacacatatataaatagataaataaaagaatgagatt 99


Query: 100 atttttattattattatcaattttcaatttcaactncaactgtgaatgcattgacttgtg 159
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 100 atttttattattattatcaattttcaatttcaactncaactgtgaatgcattgacttgtg 159


Query: 160 aattatgtcaattctcagttaaagcagctgaagatttagttacacaaaatttcacacaaa 219
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 160 aattatgtcaattctcagttaaagcagctgaagatttagttacacaaaatttcacacaaa 219


Query: 220 gtcaaattattccttatttagattccgcttgttcactattaccaaatcaatgggctagta 279
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 220 gtcaaattattccttatttagattccgcttgttcactattaccaaatcaatgggctagta 279


Query: 280 attgtgaaattattgtaaatacctatggtttatcaatgattaaattagtattagaaaatg 339
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 attgtgaaattattgtaaatacctatggtttatcaatgattaaattagtattagaaaatg 339


Query: 340 aaacaccagaagttgcttgtactcaattaggtctttgtgggtcaaattcattctttacag 399
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 aaacaccagaagttgcttgtactcaattaggtctttgtgggtcaaattcattctttacag 399


Query: 400 aaactaaaaaagaaactttaggaaaatggcattggaattaaacaccattttaactccact 459
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 aaactaaaaaagaaactttaggaaaatggcattggaattaaacaccattttaactccact 459


Query: 460 caagaaattagaatgtagtgcttgtcattttgctgatggtaaagctgaaaatgttgtaaa 519
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 caagaaattagaatgtagtgcttgtcattttgctgatggtaaagctgaaaatgttgtaaa 519


Query: 520 taaagatattaataccgcaagagcatatgttgatggccaatgtgatacttttgcaattaa 579
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 taaagatattaataccgcaagagcatatgttgatggccaatgtgatacttttgcaattaa 579


Query: 580 agaagctattcatatttgtaaaagaattgttgataaagaaattggaagaattattactga 639
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 580 agaagctattcatatttgtaaaagaattgttgataaagaaattggaagaattattactga 639


Query: 640 attaaagaaccatgaaagtaaagaaaccgtttgtaacgtttgtaaacatattcatatgtg 699
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 640 attaaagaaccatgaaagtaaagaaaccgtttgtaacgtttgtaaacatattcatatgtg 699


Query: 700 ttaaaactac 709
||||||||||
Sbjct: 700 ttaaaactac 709


Score = 32.2 bits (16), Expect = 0.85
Identities = 16/16 (100%)
Strand = Plus / Minus


Query: 47 tattatttaaataata 62
||||||||||||||||
Sbjct: 62 tattatttaaataata 47


>Contig-U14591-1 (Contig-U14591-1Q) /CSM_Contig/Contig-U14591-1Q.Seq.d
Length = 200

Score = 46.1 bits (23), Expect = 6e-05
Identities = 26/27 (96%)
Strand = Plus / Minus


Query: 97 attatttttattattattatcaatttt 123
|||||| ||||||||||||||||||||
Sbjct: 57 attattattattattattatcaatttt 31


Score = 32.2 bits (16), Expect = 0.85
Identities = 19/20 (95%)
Strand = Plus / Minus


Query: 97 attatttttattattattat 116
|||||| |||||||||||||
Sbjct: 63 attattattattattattat 44


Score = 32.2 bits (16), Expect = 0.85
Identities = 19/20 (95%)
Strand = Plus / Minus


Query: 97 attatttttattattattat 116
|||||| |||||||||||||
Sbjct: 75 attattattattattattat 56


Score = 32.2 bits (16), Expect = 0.85
Identities = 19/20 (95%)
Strand = Plus / Minus


Query: 97 attatttttattattattat 116
|||||| |||||||||||||
Sbjct: 81 attattattattattattat 62


Score = 32.2 bits (16), Expect = 0.85
Identities = 19/20 (95%)
Strand = Plus / Minus


Query: 97 attatttttattattattat 116
|||||| |||||||||||||
Sbjct: 69 attattattattattattat 50


Score = 32.2 bits (16), Expect = 0.85
Identities = 19/20 (95%)
Strand = Plus / Minus


Query: 97 attatttttattattattat 116
|||||| |||||||||||||
Sbjct: 78 attattattattattattat 59


Score = 32.2 bits (16), Expect = 0.85
Identities = 19/20 (95%)
Strand = Plus / Minus


Query: 97 attatttttattattattat 116
|||||| |||||||||||||
Sbjct: 66 attattattattattattat 47


Score = 32.2 bits (16), Expect = 0.85
Identities = 19/20 (95%)
Strand = Plus / Minus


Query: 97 attatttttattattattat 116
|||||| |||||||||||||
Sbjct: 72 attattattattattattat 53


Score = 32.2 bits (16), Expect = 0.85
Identities = 19/20 (95%)
Strand = Plus / Minus


Query: 97 attatttttattattattat 116
|||||| |||||||||||||
Sbjct: 60 attattattattattattat 41


Score = 30.2 bits (15), Expect = 3.4
Identities = 18/19 (94%)
Strand = Plus / Minus


Query: 98 ttatttttattattattat 116
||||| |||||||||||||
Sbjct: 83 ttattattattattattat 65


>Contig-U02933-1 (Contig-U02933-1Q) /CSM_Contig/Contig-U02933-1Q.Seq.d
Length = 562

Score = 46.1 bits (23), Expect = 6e-05
Identities = 32/35 (91%)
Strand = Plus / Plus


Query: 54 taaataataaacacatatataaatagataaataaa 88
||||||||||| | ||||||||||| |||||||||
Sbjct: 447 taaataataaataaatatataaatatataaataaa 481


Database: CSM
Posted date: Jun 9, 2004 7:35 PM
Number of letters in database: 5,674,871
Number of sequences in database: 6905

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 28,238
Number of Sequences: 6905
Number of extensions: 28238
Number of successful extensions: 11697
Number of sequences better than 10.0: 1583
length of query: 775
length of database: 5,674,871
effective HSP length: 16
effective length of query: 759
effective length of database: 5,564,391
effective search space: 4223372769
effective search space used: 4223372769
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2009. 6.27
Homology vs DNA
Query= Contig-U04633-1 (Contig-U04633-1Q) /CSM_Contig/Contig-U04633-1Q.Seq.d
(775 letters)

Database: ddbj_A
102,105,510 sequences; 101,790,757,118 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(AC115608) Dictyostelium discoideum chromosome 2 map 6199819... 617 0.0 5
(C92854) Dictyostelium discoideum slug cDNA, clone SSF507. 617 0.0 3
(AU036959) Dictyostelium discoideum slug cDNA, clone SSB874. 494 e-143 2
(AU072943) Dictyostelium discoideum slug cDNA, clone SSF507. 222 1e-67 2
(CR769785) Zebrafish DNA sequence from clone DKEY-1N3 in lin... 50 0.003 3
(FE238845) CAPG5060.fwd CAPG Naegleria gruberi amoeba stage ... 50 0.007 2
(CR854834) Zebrafish DNA sequence from clone DKEYP-92B10 in ... 54 0.008 1
(AC176656) Strongylocentrotus purpuratus clone R3-3081O23, W... 54 0.008 1
(BX248743) Zebrafish DNA sequence from clone CH211-202P11. 36 0.026 3
(AL844143) Mouse DNA sequence from clone RP23-370D19 on chro... 52 0.032 1
(CG745334) P038-1-H06.ya Ppa EcoRI BAC Library Pristionchus ... 52 0.032 1
(AC173214) Strongylocentrotus purpuratus clone R3-3051O19, W... 42 0.048 2
(AM440627) Vitis vinifera contig VV78X215791.5, whole genome... 42 0.068 3
(CU469585) Zebrafish DNA sequence from clone CH73-111M19 in ... 36 0.070 4
(CT967310) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 38 0.078 2
(DY892844) CeleSEQ11862 Cunninghamella elegans pBluescript (... 46 0.11 2
(AC112898) Rattus norvegicus 2 BAC CH230-157M2 (Children's H... 44 0.11 3
(DY886390) CeleSEQ2032 Cunninghamella elegans pBluescript (E... 46 0.11 2
(AE017197) Rickettsia typhi str. Wilmington complete genome. 40 0.12 14
(FM992688) Candida dubliniensis CD36 chromosome 1, complete ... 50 0.13 1
(AC200942) Strongylocentrotus purpuratus clone R3-1035N13, W... 50 0.13 1
(AC176456) Strongylocentrotus purpuratus clone R3-3068M8, WO... 50 0.13 1
(FI108643) 02-L103213-1033-001-C01-CCrv IGS-SCF-1033 Bvu-KWS... 50 0.13 1
(DX580212) SBA002_F19.f Sugar beet BAC library USH20 (Code S... 50 0.13 1
(AC004709) Plasmodium falciparum chromosome 12, *** SEQUENCI... 38 0.13 6
(CT573442) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 42 0.18 3
(CT674991) Danio rerio EST, clone ZF_mu_250o04 3'. 40 0.21 2
(CU138573) Zebrafish DNA sequence from clone CH211-121H6. 36 0.23 3
(AC192683) Saimiri boliviensis boliviensis clone CH254-233K2... 42 0.24 4
(BX465215) Zebrafish DNA sequence from clone DKEY-186M8 in l... 36 0.27 6
(CU914144) Zebrafish DNA sequence from clone ZFOS-1056B4 in ... 40 0.30 3
(DE151807) Bombyx mori genomic DNA, Fosmid clone:RO0292-P24_R. 46 0.30 2
(AE014848) Plasmodium falciparum 3D7 chromosome 12, section ... 34 0.30 8
(CR847804) Zebrafish DNA sequence from clone DKEY-85C24 in l... 42 0.31 3
(BH616686) BMBAC309G03SP6_PSU Brugia malayi Genomic Bac Libr... 34 0.31 3
(CU571251) Zebrafish DNA sequence from clone CH73-178H11 in ... 46 0.32 4
(AC177005) Strongylocentrotus purpuratus clone R3-1038O03, W... 40 0.33 5
(AL929357) Plasmodium falciparum strain 3D7, chromosome 9; s... 36 0.34 5
(AC128562) Rattus norvegicus clone CH230-425G14, *** SEQUENC... 40 0.40 4
(AM478908) Vitis vinifera, whole genome shotgun sequence, co... 40 0.43 3
(EJ175259) 1092344098088 Global-Ocean-Sampling_GS-27-01-01-1... 42 0.43 2
(AC176832) Strongylocentrotus purpuratus clone R3-1110I9, WO... 40 0.47 5
(CU929154) Zebrafish DNA sequence from clone CH73-329G8 in l... 48 0.51 1
(CU915755) Zebrafish DNA sequence from clone CH73-175L23 in ... 48 0.51 1
(CT027572) Zebrafish DNA sequence from clone CH73-52E5 in li... 48 0.51 1
(BX950199) Zebrafish DNA sequence from clone CH211-215A11 in... 48 0.51 1
(BX908389) Zebrafish DNA sequence from clone DKEY-98G7 in li... 48 0.51 1
(BX649534) Zebrafish DNA sequence from clone DKEY-31F5 in li... 48 0.51 1
(BX544881) Zebrafish DNA sequence from clone DKEY-64F15 in l... 48 0.51 1
(BX294113) Zebrafish DNA sequence from clone DKEYP-73G8 in l... 48 0.51 1
(BX294100) Zebrafish DNA sequence from clone DKEYP-2G11 in l... 48 0.51 1
(BX247868) Zebrafish DNA sequence from clone DKEY-253A1 in l... 48 0.51 1
(BX005152) Zebrafish DNA sequence from clone CH211-168G2 in ... 48 0.51 1
(AL606809) Zebrafish DNA sequence from clone BUSM1-71J22 in ... 48 0.51 1
(AL606702) Zebrafish DNA sequence from clone BUSM1-172K9 in ... 48 0.51 1
(AC142448) Mus musculus BAC clone RP24-540M5 from chromosome... 48 0.51 1
(AC134545) Mus musculus BAC clone RP24-470H2 from chromosome... 48 0.51 1
(AM486966) Vitis vinifera, whole genome shotgun sequence, co... 48 0.51 1
(AY392442) Dictyostelium discoideum dolichyl phosphate gluco... 48 0.51 1
(AL050315) Human DNA sequence from clone RP5-1173K17 on chro... 48 0.51 1
(AC106380) Rattus norvegicus clone CH230-117B12, *** SEQUENC... 48 0.51 1
(CT573261) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 48 0.51 1
(CR376830) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 48 0.51 1
(BX510344) Zebrafish DNA sequence *** SEQUENCING CANCELLED *... 48 0.51 1
(AC216169) Procavia capensis clone CH280-416L13, WORKING DRA... 48 0.51 1
(AC200926) Strongylocentrotus purpuratus clone R3-1018L04, W... 48 0.51 1
(AC180051) Strongylocentrotus purpuratus clone R3-25G20, WOR... 48 0.51 1
(AC179905) Strongylocentrotus purpuratus clone R3-1003I7, WO... 48 0.51 1
(AC179544) Strongylocentrotus purpuratus clone R3-1033A21, W... 48 0.51 1
(AC178813) Strongylocentrotus purpuratus clone R3-22I08, WOR... 48 0.51 1
(AC176628) Strongylocentrotus purpuratus clone R3-114B21, WO... 48 0.51 1
(AC174892) Bos taurus clone CH240-279N6, WORKING DRAFT SEQUE... 48 0.51 1
(BH506756) BOGRV89TR BOGR Brassica oleracea genomic clone BO... 48 0.51 1
(AZ867649) 2M0178M05R Mouse 10kb plasmid UUGC1M library Mus ... 48 0.51 1
(FH948331) CHO_OF6747xl18r1.ab1 CHO_OF6 Nicotiana tabacum ge... 48 0.51 1
(FH660934) CHO_OF4074xj16r1.ab1 CHO_OF4 Nicotiana tabacum ge... 48 0.51 1
(FH282867) CHO_OF4189xf21f1.ab1 CHO_OF4 Nicotiana tabacum ge... 48 0.51 1
(EK402299) 1095469544821 Global-Ocean-Sampling_GS-31-01-01-1... 48 0.51 1
(EH012489) USDA-FP_185384 Lysiphlebus testaceipes adult whol... 48 0.51 1
(CT792426) Paramecium tetraurelia 5-PRIME EST from clone LK0... 48 0.51 1
(GH354318) G895P549FO16.T0 C. immitis RS, 48HR MYCELIUM_NORM... 48 0.51 1
(GH339392) G895P516FG9.T0 C. immitis RS, 48HR MYCELIUM_NORMA... 48 0.51 1
(FE175066) LV_NC_RA11E15f Litopenaeus vannamei nerve cord cD... 48 0.51 1
(FE148247) LV_LO_RA003L17f Litopenaeus vannamei lymphoid org... 48 0.51 1
(EY319596) CAWX6967.rev CAWX Helobdella robusta Primary Earl... 48 0.51 1
(EY311678) CAWX23598.rev CAWX Helobdella robusta Primary Ear... 48 0.51 1
(EY294436) CAWX11681.rev CAWX Helobdella robusta Primary Ear... 48 0.51 1
(BX649562) Zebrafish DNA sequence from clone CH211-244A23 in... 36 0.53 5
(CU915566) Zebrafish DNA sequence from clone CH73-119K21 in ... 40 0.53 3
(CU856221) Zebrafish DNA sequence from clone CH1073-83M3 in ... 36 0.57 5
(CU571258) Zebrafish DNA sequence *** SEQUENCING CANCELLED *... 46 0.57 4
(AC168322) Strongylocentrotus purpuratus clone R3-64N10, WOR... 38 0.60 4
(AC222411) Bos taurus clone CH240-417J20, WORKING DRAFT SEQU... 44 0.68 3
(AC218729) Bos taurus clone CH240-295N11, WORKING DRAFT SEQU... 40 0.71 4
(AC225025) Solanum lycopersicum chromosome 1 clone C01HBa026... 36 0.71 4
(FJ686871) Glycine max clone gmw1-61M05, complete sequence. 40 0.72 8
(AL929356) Plasmodium falciparum strain 3D7, chromosome 9; s... 44 0.78 7
(AC186968) Canis familiaris chromosome 3, clone XX-219I19, c... 40 0.82 4
(BP190019) Dugesia japonica cDNA, clone: 03839_HH, expressed... 38 0.84 2
(AC208489) Populus trichocarpa clone JGIACSB261-H15, complet... 46 0.87 3
(AC146550) Medicago truncatula clone mth2-8d22, complete seq... 38 0.96 4
(AC175925) Strongylocentrotus purpuratus clone R3-3043K20, W... 36 1.0 8
(CU861652) Zebrafish DNA sequence from clone CH73-197L12 in ... 40 1.0 4
(AJ235273) Rickettsia prowazekii strain Madrid E, complete g... 40 1.1 5
(CR376741) Zebrafish DNA sequence from clone DKEY-114B16 in ... 40 1.1 5
(AC153646) Mus musculus BAC clone RP24-493K8 from chromosome... 36 1.1 5
(AL844168) Mouse DNA sequence from clone RP23-413G9 on chrom... 44 1.1 6
(BX546453) Zebrafish DNA sequence from clone CH211-203G10 in... 40 1.1 4
(AC135666) Rattus norvegicus clone CH230-6D7, *** SEQUENCING... 44 1.2 6
(AY528719) Homo sapiens estrogen-related receptor gamma (ESR... 40 1.2 7
(EK385920) 1095469482729 Global-Ocean-Sampling_GS-31-01-01-1... 42 1.2 2
(AC184279) Strongylocentrotus purpuratus clone R3-4018I6, WO... 36 1.2 6
(CX583305) TTE00024751 Amplicon Express - Conjugative Form T... 36 1.2 2
(AM468169) Vitis vinifera contig VV78X080923.4, whole genome... 46 1.3 2
(AM463329) Vitis vinifera contig VV78X216660.16, whole genom... 38 1.4 4
(CR936503) Lactobacillus sakei strain 23K complete genome. 42 1.4 15
(AL450429) Human DNA sequence *** SEQUENCING CANCELLED *** f... 40 1.4 4
(AF385812) Bombus sichelii isolate MlsicSa69 cytochrome oxid... 38 1.4 2
(AF385811) Bombus sichelii isolate Mlsic2344 cytochrome oxid... 38 1.4 2
(AF279521) Bombus sichelii haplotype 2 cytochrome oxidase 1 ... 38 1.4 2
(AF279520) Bombus sichelii haplotype 1 cytochrome oxidase 1 ... 38 1.4 2
(CR762421) Zebrafish DNA sequence from clone DKEYP-15D8 in l... 40 1.5 4
(EI384984) POTAT32TR Solanum tuberosum RHPOTKEY BAC ends Sol... 36 1.5 2
(DQ229107) Chara vulgaris chloroplast, complete genome. 36 1.5 5
(FF563660) TT1B642TH Tetrahymena thermophila SB210 cDNA libr... 36 1.5 2
(AC219701) Bos taurus clone CH240-325K13, WORKING DRAFT SEQU... 38 1.5 4
(DW635927) CLJ365-D13.x1d-t SHGC-CLJ2 Gasterosteus aculeatus... 38 1.6 2
(AC110628) Rattus norvegicus clone CH230-139L15, WORKING DRA... 40 1.6 6
(AY181105) Bombus hortorum strain Norway cytochrome oxidase ... 38 1.7 2
(AY181104) Bombus hortorum strain Denmark cytochrome oxidase... 38 1.7 2
(AY181103) Bombus hortorum strain Germany cytochrome oxidase... 38 1.7 2
(AY181102) Bombus hortorum strain France cytochrome oxidase ... 38 1.7 2
(BX255885) Zebrafish DNA sequence from clone CH211-213M12 in... 44 1.7 5
(AC110627) Rattus norvegicus clone CH230-273M5, *** SEQUENCI... 40 1.7 3
(BX936462) Zebrafish DNA sequence from clone CH211-147O6 in ... 38 1.8 5
(AE014847) Plasmodium falciparum 3D7 chromosome 12, section ... 38 1.9 7
(AL592463) Human DNA sequence from clone RP11-410K21 on chro... 34 1.9 5
(FM992689) Candida dubliniensis CD36 chromosome 2, complete ... 46 1.9 8
(EJ840558) 1093017827387 Global-Ocean-Sampling_GS-30-02-01-1... 36 1.9 3
(AC098708) Mus musculus BAC clone RP23-1I16 from 13, complet... 34 2.0 7
(CU672264) Zebrafish DNA sequence from clone CH1073-278H8. 46 2.0 1
(CU633992) Zebrafish DNA sequence from clone CH1073-20K7 in ... 46 2.0 1
(CU462873) Zebrafish DNA sequence from clone CH73-215F7 in l... 46 2.0 1
(CU326348) Zebrafish DNA sequence from clone CH211-190M22 in... 46 2.0 1
(CT583668) Zebrafish DNA sequence from clone CH211-24C13 in ... 46 2.0 1
(CR855301) Zebrafish DNA sequence from clone CH211-193K8 in ... 46 2.0 1
(CR848802) Zebrafish DNA sequence from clone DKEY-15J19 in l... 46 2.0 1
(CR762486) Zebrafish DNA sequence from clone DKEY-264O9 in l... 46 2.0 1
(CR384089) Zebrafish DNA sequence from clone CH211-122A17 in... 46 2.0 1
(CR376853) Zebrafish DNA sequence from clone CH211-198N7 in ... 46 2.0 1
(BX957271) Zebrafish DNA sequence from clone CH211-130N22 in... 46 2.0 1
(BX530036) Zebrafish DNA sequence from clone DKEY-93M18 in l... 46 2.0 1
(BX470081) Zebrafish DNA sequence from clone RP71-84P16. 46 2.0 1
(BX323076) Zebrafish DNA sequence from clone DKEY-106A24 in ... 46 2.0 1
(BX005216) Zebrafish DNA sequence from clone CH211-286O21 in... 46 2.0 1
(BX004838) Zebrafish DNA sequence from clone DKEY-29N1 in li... 46 2.0 1
(BV275782) S232P637FC12.T0 Beagle Canis familiaris STS genom... 46 2.0 1
(AC149223) Mus musculus BAC clone RP23-203K1 from chromosome... 46 2.0 1
(AC147380) Mus musculus BAC clone RP24-119J10 from chromosom... 46 2.0 1
(AC147083) Mus musculus BAC clone RP23-349M16 from chromosom... 46 2.0 1
(AC139133) Mus musculus chromosome 15, clone RP23-412G9, com... 46 2.0 1
(AC138115) Mus musculus BAC clone RP24-241G8 from chromosome... 46 2.0 1
(AC132092) Mus musculus BAC clone RP24-470A15 from chromosom... 46 2.0 1
(AC124226) Mus musculus chromosome 15, clone RP23-94G21, com... 46 2.0 1
(AC113541) Mus musculus chromosome 5, clone RP23-185N2, comp... 46 2.0 1
(AC068663) Mus musculus strain C57BL6/J chromosome 5 clone R... 46 2.0 1
(AC188117) Pongo abelii chromosome UNK clone CH276-93H12, co... 46 2.0 1
(Z97337) Arabidopsis thaliana DNA chromosome 4, ESSA I FCA c... 46 2.0 1
(EF661024) Carica papaya clone BAC PH85B24, complete sequence. 46 2.0 1
(AM484180) Vitis vinifera contig VV78X262266.13, whole genom... 46 2.0 1
(AM477720) Vitis vinifera contig VV78X160248.9, whole genome... 46 2.0 1
(AM476302) Vitis vinifera contig VV78X175134.5, whole genome... 46 2.0 1
(AM474906) Vitis vinifera contig VV78X106364.12, whole genom... 46 2.0 1
(AM472659) Vitis vinifera contig VV78X037447.7, whole genome... 46 2.0 1
(AM470827) Vitis vinifera contig VV78X219258.3, whole genome... 46 2.0 1
(AM470189) Vitis vinifera contig VV78X135758.3, whole genome... 46 2.0 1
(AM467153) Vitis vinifera contig VV78X057379.2, whole genome... 46 2.0 1
(AM461114) Vitis vinifera contig VV78X141263.15, whole genom... 46 2.0 1
(AM458828) Vitis vinifera contig VV78X010702.5, whole genome... 46 2.0 1
(AM453182) Vitis vinifera contig VV78X188437.6, whole genome... 46 2.0 1
(AM452587) Vitis vinifera contig VV78X054521.5, whole genome... 46 2.0 1
(AM447951) Vitis vinifera, whole genome shotgun sequence, co... 46 2.0 1
(AM447295) Vitis vinifera contig VV78X112913.2, whole genome... 46 2.0 1
(AM444837) Vitis vinifera contig VV78X169506.31, whole genom... 46 2.0 1
(AM442464) Vitis vinifera, whole genome shotgun sequence, co... 46 2.0 1
(AM436657) Vitis vinifera contig VV78X201948.8, whole genome... 46 2.0 1
(AM433222) Vitis vinifera contig VV78X260560.5, whole genome... 46 2.0 1
(AM433198) Vitis vinifera contig VV78X104151.16, whole genom... 46 2.0 1
(AM431259) Vitis vinifera contig VV78X265952.2, whole genome... 46 2.0 1
(AM431081) Vitis vinifera contig VV78X040923.7, whole genome... 46 2.0 1
(AM430248) Vitis vinifera contig VV78X235525.7, whole genome... 46 2.0 1
(AL161539) Arabidopsis thaliana DNA chromosome 4, contig fra... 46 2.0 1
(AC217588) Populus trichocarpa clone POP047-P10, complete se... 46 2.0 1
(AC216597) Populus trichocarpa clone POP032-B19, complete se... 46 2.0 1
(AC174342) Medicago truncatula chromosome 6 clone mth2-166e1... 46 2.0 1
(AC174323) Medicago truncatula chromosome 6 clone mth2-13b11... 46 2.0 1
(AC137080) Medicago truncatula chromosome 6 clone mth2-9a7, ... 46 2.0 1
(AC125479) Medicago truncatula clone mth2-7f11, complete seq... 46 2.0 1
(AR379067) Sequence 4073 from patent US 6605709. 46 2.0 1
(Z80218) Caenorhabditis elegans Cosmid F52D4. 46 2.0 1
(EF710645) Glyptapanteles flavicoxis clone BAC 1C3, complete... 46 2.0 1
(CR548612) Paramecium tetraurelia macronuclear largest chrom... 46 2.0 1
(AE014851) Plasmodium falciparum 3D7 chromosome 12, section ... 46 2.0 1
(AE001402) Plasmodium falciparum 3D7 chromosome 2 section 39... 46 2.0 1
(AC117070) Dictyostelium discoideum chromosome 2 map 2097701... 46 2.0 1
(AC116986) Dictyostelium discoideum chromosome 2 map 2234041... 46 2.0 1
(AC116984) Dictyostelium discoideum chromosome 2 map 2567470... 46 2.0 1
(AC116963) Dictyostelium discoideum chromosome 2 map 4657875... 46 2.0 1
(AL672277) Human DNA sequence from clone RP11-309M23 on chro... 46 2.0 1
(AC091699) Homo sapiens chromosome 10 clone RP11-296D9, comp... 46 2.0 1
(AC157462) Rhinolophus ferrumequinum clone VMRC7-1K9, WORKIN... 46 2.0 1
(AC127772) Rattus norvegicus clone CH230-91F24, WORKING DRAF... 46 2.0 1
(AC120017) Mus musculus clone RP24-242H3, LOW-PASS SEQUENCE ... 46 2.0 1
(CU929101) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 46 2.0 1
(CU855695) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 46 2.0 1
(AC084716) Homo sapiens clone RP11-215A12, WORKING DRAFT SEQ... 46 2.0 1
(AC074326) Homo sapiens chromosome 10 clone RP11-552A15, 128... 46 2.0 1
(CU074324) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 2.0 1
(CR589945) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 46 2.0 1
(AL844509) Plasmodium falciparum chromosome 13. 46 2.0 1
(AC224544) Bos taurus clone CH240-482D9, WORKING DRAFT SEQUE... 46 2.0 1
(AC210108) Zea mays chromosome 2 clone ZMMBBb-553M23; ZMMBBb... 46 2.0 1
(AC207640) Zea mays chromosome 2 clone CH201-215K19; ZMMBBc0... 46 2.0 1
(AC184411) Strongylocentrotus purpuratus clone R3-3069G9, WO... 46 2.0 1
(AC177068) Strongylocentrotus purpuratus clone R3-4004J1, WO... 46 2.0 1
(AC168167) Bos taurus clone CH240-231I13, WORKING DRAFT SEQU... 46 2.0 1
(AC005140) Plasmodium falciparum chromosome 12 clone PFYACB8... 46 2.0 1
(AY068782) Schmidtea mediterranea clone H.112.7d unknown mRN... 46 2.0 1
(AZ808015) 2M0071H15F Mouse 10kb plasmid UUGC1M library Mus ... 46 2.0 1
(AZ656529) 1M0532C09F Mouse 10kb plasmid UUGC1M library Mus ... 46 2.0 1
(AZ208936) SP_0138_A2_B01_T7A Strongylocentrotus purpuratus,... 46 2.0 1
(AZ208925) SP_0138_A2_A01_T7A Strongylocentrotus purpuratus,... 46 2.0 1
(FH345519) CHO_OF4641xj01r1.ab1 CHO_OF4 Nicotiana tabacum ge... 46 2.0 1
(FH345446) CHO_OF4641xj01f1.ab1 CHO_OF4 Nicotiana tabacum ge... 46 2.0 1
(FH256253) CHO_OF3229xe20r1.ab1 CHO_OF3 Nicotiana tabacum ge... 46 2.0 1
(ER528262) 1093015726879 Global-Ocean-Sampling_GS-35-01-01-1... 46 2.0 1
(ER419096) 1092963691380 Global-Ocean-Sampling_GS-35-01-01-1... 46 2.0 1
(ER387879) 1094428724054 Global-Ocean-Sampling_GS-34-01-01-1... 46 2.0 1
(EK424638) 1095516004176 Global-Ocean-Sampling_GS-31-01-01-1... 46 2.0 1
(EK152196) 1095456057187 Global-Ocean-Sampling_GS-31-01-01-1... 46 2.0 1
(EK129270) 1093002501058 Global-Ocean-Sampling_GS-31-01-01-1... 46 2.0 1
(EK106025) 1092963050577 Global-Ocean-Sampling_GS-31-01-01-1... 46 2.0 1
(EJ975172) 1093022111638 Global-Ocean-Sampling_GS-30-02-01-1... 46 2.0 1
(EJ964806) 1093022032067 Global-Ocean-Sampling_GS-30-02-01-1... 46 2.0 1
(EJ926614) 1093018785402 Global-Ocean-Sampling_GS-30-02-01-1... 46 2.0 1
(EJ726777) 1092959510026 Global-Ocean-Sampling_GS-30-02-01-1... 46 2.0 1
(EJ704541) 1092956048742 Global-Ocean-Sampling_GS-30-02-01-1... 46 2.0 1
(EJ661273) 1092955024584 Global-Ocean-Sampling_GS-30-02-01-1... 46 2.0 1
(EJ628138) 1092963250137 Global-Ocean-Sampling_GS-29-01-01-1... 46 2.0 1
(EJ444240) 1093015318213 Global-Ocean-Sampling_GS-28-01-01-1... 46 2.0 1
(EJ439206) 1093015296263 Global-Ocean-Sampling_GS-28-01-01-1... 46 2.0 1
(EJ391880) 1092963953379 Global-Ocean-Sampling_GS-28-01-01-1... 46 2.0 1
(EJ277481) 1095366029941 Global-Ocean-Sampling_GS-27-01-01-1... 46 2.0 1
(EJ257867) 1095349020865 Global-Ocean-Sampling_GS-27-01-01-1... 46 2.0 1
(EJ254237) 1095347006345 Global-Ocean-Sampling_GS-27-01-01-1... 46 2.0 1
(EJ010354) 1095403664139 Global-Ocean-Sampling_GS-26-01-01-1... 46 2.0 1
(ED253234) AUAC-aac81e09.g1 Ascaris suum whole genome shotgu... 46 2.0 1
(DX981456) SBA011_K22.f Sugar beet BAC library USH20 (Code S... 46 2.0 1
(DX098386) AU_BAC020A2B09_T7 CHORI212 Ictalurus punctatus ge... 46 2.0 1
(CZ289058) cp61h01.r Candida parapsilosis Random Genomic Lib... 46 2.0 1
(CZ289057) cp61h01.f Candida parapsilosis Random Genomic Lib... 46 2.0 1
(CW875420) she3h3-26.b_079.ab1 Whole-genome shotgun library ... 46 2.0 1
(CW875241) she2h8-47.b_011.ab1 Whole-genome shotgun library ... 46 2.0 1
(CU858758) A BAC library has been constructed from PN40024 g... 46 2.0 1
(CR480787) mth2-192P6FM1 BAC end, cultivar Jemalong A17 of M... 46 2.0 1
(CR295104) mte1-11C10FM1 BAC end, cultivar Jemalong A17 of M... 46 2.0 1
(CE659719) tigr-gss-dog-17000368446920 Dog Library Canis lup... 46 2.0 1
(CE640234) tigr-gss-dog-17000366823645 Dog Library Canis lup... 46 2.0 1
(CE605039) tigr-gss-dog-17000327546688 Dog Library Canis lup... 46 2.0 1
(CE529396) tigr-gss-dog-17000365858237 Dog Library Canis lup... 46 2.0 1
(CE219657) tigr-gss-dog-17000326876404 Dog Library Canis lup... 46 2.0 1
(CE195115) tigr-gss-dog-17000371494882 Dog Library Canis lup... 46 2.0 1
(CE073672) tigr-gss-dog-17000323615084 Dog Library Canis lup... 46 2.0 1
(CC377203) PUHNG81TD ZM_0.6_1.0_KB Zea mays genomic clone ZM... 46 2.0 1
(BX233101) Danio rerio genomic clone DKEY-246I5, genomic sur... 46 2.0 1
(DY885105) CeleSEQ296 Cunninghamella elegans pBluescript (Ec... 46 2.0 1
(DV607635) EST1210631 Glossina morsitans morsitans Fat body ... 46 2.0 1
(BJ394423) Dictyostelium discoideum cDNA clone:dds35h03, 5' ... 46 2.0 1
(FG588202) TpNBL016829 Trichinella pseudospiralis new born l... 46 2.0 1
(FG350872) TpNBL003612 Trichinella pseudospiralis new born l... 46 2.0 1
(FG350559) TpNBL003299 Trichinella pseudospiralis new born l... 46 2.0 1
(FG347371) TpNBL000111 Trichinella pseudospiralis new born l... 46 2.0 1
(FG087285) CMRC-FF-IH0-acg-j-17-0-CMRC.r1 Ceratitis capitata... 46 2.0 1
(CP000721) Clostridium beijerinckii NCIMB 8052, complete gen... 46 2.0 1
(CP000524) Bartonella bacilliformis KC583, complete genome. 46 2.0 1
(AM942759) Proteus mirabilis strain HI4320, complete genome. 46 2.0 1
(AC215731) Bos taurus clone CH240-365D18, WORKING DRAFT SEQU... 40 2.0 4
(EU275726) Polysphondylium pallidum strain PN500 mitochondri... 34 2.0 5
(AC232013) Solanum tuberosum chromosome 5 clone RH038H21, **... 44 2.1 3
(CU633773) Zebrafish DNA sequence from clone CH1073-331E5 in... 38 2.1 3
(EU877954) Trachypachus holmbergi mitochondrion, complete ge... 42 2.2 3
(BX248308) Zebrafish DNA sequence from clone DKEY-247M21 in ... 36 2.2 6
(CR378676) Photobacterium profundum SS9 chromosome 2; segmen... 42 2.2 4
(AL844507) Plasmodium falciparum chromosome 8. 44 2.3 3
(EJ842745) 1093017841628 Global-Ocean-Sampling_GS-30-02-01-1... 36 2.4 3
(CU459134) Zebrafish DNA sequence from clone DKEY-221N1 in l... 38 2.4 3
(AC116920) Dictyostelium discoideum chromosome 2 map 4415041... 40 2.5 5
(AL929389) Zebrafish DNA sequence from clone CH211-51H4 in l... 36 2.5 8
(AC169175) Medicago truncatula chromosome 2 clone mth2-176l1... 36 2.7 6
(CU928860) Medicago truncatula chromosome 5 clone mth4-58a13... 34 2.8 5
(AY800246) Tribolium castaneum pangolin gene, partial cds. 40 2.9 5
(AM430294) Vitis vinifera contig VV78X148988.10, whole genom... 42 2.9 2
(BX649370) Zebrafish DNA sequence from clone DKEY-97I11 in l... 44 2.9 3
(CU651633) Zebrafish DNA sequence from clone CH1073-464I19 i... 40 3.0 3
(CS468870) Sequence 61 from Patent EP1748080. 38 3.0 3
(CS468869) Sequence 60 from Patent EP1748080. 38 3.0 3
(CS419347) Sequence 61 from Patent WO2006094836. 38 3.0 3
(CS419346) Sequence 60 from Patent WO2006094836. 38 3.0 3
(AC199455) Rhesus Macaque BAC CH250-116N11 () complete sequ... 40 3.0 2
(AC124957) Medicago truncatula clone mth2-15k14, complete se... 36 3.1 6
(CR626882) Zebrafish DNA sequence from clone CH211-278B7 in ... 40 3.1 5
(AJ562665) Cryptosporidium parvum GSS, PAC clone pica_0010_e... 40 3.2 2
(BX936445) Zebrafish DNA sequence from clone DKEY-50O12 in l... 36 3.2 5
(CU856680) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 40 3.2 6
(CR954963) Zebrafish DNA sequence from clone DKEY-77J9 in li... 44 3.4 4
(EI411377) D09_hs7-45019858_GGor_040416.r Gorilla gorilla NG... 32 3.4 3
(CT009511) M.truncatula DNA sequence from clone MTH2-69I7 on... 40 3.5 5
(DX473323) Cpl15463 Papaya Genomic DNA BAC Library Carica pa... 42 3.5 2
(BX537314) Zebrafish DNA sequence from clone CH211-120E1 in ... 36 3.5 5
(BX899180) Zebrafish DNA sequence from clone DKEY-287G19 in ... 40 3.5 2
(AL117693) Human chromosome 14 DNA sequence BAC R-562L8 of l... 34 3.6 7
(AC193856) Pan troglodytes BAC clone CH251-490M23 from chrom... 40 3.6 2
(AY038935) Dictyostelium discoideum lipid-anchored plasma me... 38 3.8 2
(BX927095) Zebrafish DNA sequence from clone CH211-202E13 in... 34 3.8 2
(FB596461) Sequence 12184 from Patent WO2004081186. 38 3.8 2
(AC168840) Strongylocentrotus purpuratus clone R3-13B5, WORK... 40 3.8 2
(BX293568) Zebrafish DNA sequence from clone CH211-215F13 in... 32 3.8 8
(CU834709) A BAC library has been constructed from PN40024 g... 40 3.9 2
(CT030139) Zebrafish DNA sequence *** SEQUENCING CANCELLED *... 44 3.9 2
(BX897728) Zebrafish DNA sequence *** SEQUENCING CANCELLED *... 40 4.0 5
(AL512591) Human DNA sequence from clone RP11-176L21 on chro... 38 4.0 4
(AQ083802) CpG0638A CpIOWAgDNA1 Cryptosporidium parvum genom... 40 4.1 2
(CU928224) Zebrafish DNA sequence from clone CH73-183E2 in l... 38 4.1 3
(AC164758) Bos taurus clone CH240-155K2, *** SEQUENCING IN P... 40 4.1 4
(AC005292) Genomic sequence for Arabidopsis thaliana BAC F26... 38 4.2 3
(FF290453) pgsP0026M24 Solea senegalensis Mix of cDNA librar... 36 4.2 2
(CU861611) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 34 4.3 7
(AC111574) Rattus norvegicus clone CH230-65I16, *** SEQUENCI... 40 4.3 4
(ER834227) POTN148TR Solanum tuberosum RHPOTKEY BAC ends Sol... 36 4.3 2
(AM526836) Paracentrotus lividus EST, clone MPMGp1171I07120Q... 40 4.3 2
(BX293980) Mycoplasma mycoides subsp. mycoides SC str. PG1, ... 36 4.4 14
(EI297434) GM_WBc0022A12.f GM_WBc Glycine max genomic clone ... 40 4.4 2
(CT573292) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 36 4.5 4
(GC697141) Sequence 12386 from patent US 6812339. 36 4.5 5
(GC701670) Sequence 16915 from patent US 6812339. 36 4.5 5
(FP101863) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 40 4.7 3
(BX129161) Danio rerio genomic clone DKEY-287D3, genomic sur... 40 4.7 2
(AC201292) Strongylocentrotus purpuratus clone R3-16G23, WOR... 40 4.8 5
(EI337919) GM_WBc0080I21.f GM_WBc Glycine max genomic clone ... 40 4.8 2
(CT737426) Zebrafish DNA sequence *** SEQUENCING CANCELLED *... 36 4.8 4
(FH520095) CHO_OF4805xp23f1.ab1 CHO_OF4 Nicotiana tabacum ge... 40 4.8 2
(EJ187998) 1092344167454 Global-Ocean-Sampling_GS-27-01-01-1... 42 4.8 2
(AC133862) Medicago truncatula clone mth2-30d7, complete seq... 36 4.8 5
(FF288646) pgsP0021L05 Solea senegalensis Mix of cDNA librar... 36 4.8 2
(CU695177) Zebrafish DNA sequence from clone CH73-367J22. 38 4.9 4
(EJ830538) 1093017579195 Global-Ocean-Sampling_GS-30-02-01-1... 38 5.0 2
(EY372456) CAXA14020.fwd CAXA Helobdella robusta Subtracted ... 42 5.0 2
(BX927279) Zebrafish DNA sequence from clone CH211-101N16 in... 38 5.0 4
(EJ531325) 1092955229824 Global-Ocean-Sampling_GS-29-01-01-1... 42 5.0 2
(EJ951545) 1093018948686 Global-Ocean-Sampling_GS-30-02-01-1... 42 5.1 2
(AY395038) Schistosoma mansoni thyroid hormone receptor alph... 38 5.1 2
(EK354625) 1095468460095 Global-Ocean-Sampling_GS-31-01-01-1... 42 5.1 2
(FI210476) CccaBa043-O13TR CccABa Cajanus cajan genomic clon... 34 5.2 2
(BX537106) Zebrafish DNA sequence from clone DKEY-98P3 in li... 40 5.3 6
(DU845085) 27033 Tomato HindIII BAC Library Solanum lycopers... 40 5.3 2
(EY335297) CAWY6928.fwd CAWY Helobdella robusta Subtracted E... 40 5.3 2
(EJ107468) 1092343141911 Global-Ocean-Sampling_GS-27-01-01-1... 42 5.4 2
(DU850131) 45097 Tomato HindIII BAC Library Solanum lycopers... 40 5.5 2
(AC163305) Bos taurus clone CH240-144E7, *** SEQUENCING IN P... 44 5.5 4
(AL844506) Plasmodium falciparum chromosome 7. 44 5.5 2
(CT573459) Zebrafish DNA sequence from clone CH211-267P17 in... 40 5.5 3
(CT737192) Zebrafish DNA sequence from clone DKEYP-106E12 in... 36 5.5 6
(EJ340395) 1092963512467 Global-Ocean-Sampling_GS-28-01-01-1... 42 5.5 2
(AC004153) Plasmodium falciparum chromosome 12 clone PFYAC81... 32 5.5 7
(ER611523) 1093016313004 Global-Ocean-Sampling_GS-36-01-01-2... 42 5.6 2
(AC233445) Solanum tuberosum chromosome 5 clone RH086K19, **... 38 5.6 4
(EK100195) 1092963010877 Global-Ocean-Sampling_GS-31-01-01-1... 42 5.7 2
(ER303599) 1092343725728 Global-Ocean-Sampling_GS-34-01-01-1... 42 5.7 2
(EK421349) 1095515508373 Global-Ocean-Sampling_GS-31-01-01-1... 42 5.8 2
(AL845512) Zebrafish DNA sequence from clone CH211-286M4 in ... 36 5.8 4
(BX321902) Zebrafish DNA sequence from clone DKEYP-6E8 in li... 40 5.8 4
(ER475618) 1093015231833 Global-Ocean-Sampling_GS-35-01-01-1... 42 5.8 2
(DQ768215) Anoplophora glabripennis mitochondrion, complete ... 36 5.8 5
(BX470185) Zebrafish DNA sequence from clone CH211-222D3 in ... 34 5.8 5
(AC229802) Bos taurus clone CH240-171J23, WORKING DRAFT SEQU... 40 5.9 5
(CT027616) Zebrafish DNA sequence *** SEQUENCING CANCELLED *... 40 6.0 5
(BX927328) Zebrafish DNA sequence from clone CH211-10M4 in l... 40 6.1 4
(AC179331) Strongylocentrotus purpuratus clone R3-57I22, WOR... 38 6.1 6
(CR380949) Candida glabrata strain CBS138 chromosome C compl... 36 6.4 8
(CZ540380) SRAA-aad31e06.g1 Strongyloides ratti whole genome... 40 6.5 2
(AC102324) Mus musculus chromosome 1, clone RP24-476A18, com... 40 6.5 3
(AC174249) Strongylocentrotus purpuratus clone R3-1115J21, W... 36 6.6 4
(AL928962) Mouse DNA sequence from clone RP23-455A4 on chrom... 36 6.7 6
(AL929009) Zebrafish DNA sequence from clone CH211-202A8 in ... 36 6.7 5
(AC105064) Mus musculus clone RP24-503J11, WORKING DRAFT SEQ... 36 6.8 6
(AC177675) Strongylocentrotus purpuratus clone R3-1017F3, WO... 36 6.8 4
(EU151593) Lomographa semiclarata voucher MC02C238 cytochrom... 38 6.9 2
(BX927391) Zebrafish DNA sequence from clone CH211-213B8 in ... 38 7.0 5
(CT573097) RP43-080H03, complete sequence. 38 7.1 6
(CR384086) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 34 7.1 4
(BX681417) Zebrafish DNA sequence from clone DKEY-161L11 in ... 36 7.1 6
(AM436483) Vitis vinifera contig VV78X174962.5, whole genome... 36 7.3 3
(AC113016) Mus musculus chromosome 9, clone RP23-181L13, com... 36 7.4 4
(CR762428) Zebrafish DNA sequence from clone CH211-172N16 in... 40 7.4 3
(BX663606) Zebrafish DNA sequence from clone CH211-181L5 in ... 40 7.6 6
(CU896631) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 40 7.6 5
(AC233730) Gallus gallus BAC clone CH261-117B15 from chromos... 38 7.7 5
(BX548046) Zebrafish DNA sequence from clone DKEY-176G1 in l... 30 7.7 8
(CU138518) Zebrafish DNA sequence from clone CH211-193O5. 40 7.7 4
(GC698756) Sequence 14001 from patent US 6812339. 44 7.8 2
(ED805422) MG__Bb0088E09r MG__Bb Mimulus guttatus genomic, g... 40 7.9 2
(CU928087) Zebrafish DNA sequence from clone CH1073-303L4 in... 44 7.9 1
(CU856520) Zebrafish DNA sequence from clone CH73-57A19 in l... 44 7.9 1
(CU695074) Zebrafish DNA sequence from clone CH73-243B8 in l... 44 7.9 1
(CU694363) Zebrafish DNA sequence from clone ZFOS-659F11. 44 7.9 1
(CU571174) Zebrafish DNA sequence from clone CH73-52P7 in li... 44 7.9 1
(CU468219) Zebrafish DNA sequence from clone CH73-209K3 in l... 44 7.9 1
(CU468051) Zebrafish DNA sequence from clone DKEY-234G11 in ... 44 7.9 1
(CU179747) Zebrafish DNA sequence from clone CH211-129C2. 44 7.9 1
(CU019630) Zebrafish DNA sequence from clone CH211-211I20 in... 44 7.9 1
(CT737254) Zebrafish DNA sequence from clone CH73-359P8 in l... 44 7.9 1
(CT573393) Zebrafish DNA sequence from clone DKEY-48P11 in l... 44 7.9 1
(CT030034) Zebrafish DNA sequence from clone CH73-366C23 in ... 44 7.9 1
(CT027791) Zebrafish DNA sequence from clone CH211-264F7 in ... 44 7.9 1
(CT025897) Zebrafish DNA sequence from clone DKEY-70E17 in l... 44 7.9 1
(CR932985) Zebrafish DNA sequence from clone DKEY-169L5 in l... 44 7.9 1
(CR855220) Zebrafish DNA sequence from clone DKEY-100J1 in l... 44 7.9 1
(CR855131) Zebrafish DNA sequence from clone DKEY-69A10 in l... 44 7.9 1
(CR848833) Zebrafish DNA sequence from clone DKEY-126N12 in ... 44 7.9 1
(CR847898) Zebrafish DNA sequence from clone CH211-160M12 in... 44 7.9 1
(CR847887) Zebrafish DNA sequence from clone DKEY-178N6 in l... 44 7.9 1
(CR753875) Zebrafish DNA sequence from clone DKEY-7N14 in li... 44 7.9 1
(CR749167) Zebrafish DNA sequence from clone DKEY-23A17 in l... 44 7.9 1
(CR450733) Zebrafish DNA sequence from clone DKEYP-86E4 in l... 44 7.9 1
(CR407702) Zebrafish DNA sequence from clone DKEY-171M10 in ... 44 7.9 1
(CR385085) Zebrafish DNA sequence from clone CH211-195A16 in... 44 7.9 1
(CR384100) Zebrafish DNA sequence from clone DKEYP-22H2 in l... 44 7.9 1
(CR381582) Zebrafish DNA sequence from clone DKEY-28M3 in li... 44 7.9 1
(CR354385) Zebrafish DNA sequence from clone DKEY-6F10 in li... 44 7.9 1
(CR339064) Zebrafish DNA sequence from clone CH211-152J3 in ... 44 7.9 1
(CR339063) Zebrafish DNA sequence from clone CH211-247J10 in... 44 7.9 1
(CR318640) Zebrafish DNA sequence from clone CH211-243M5 in ... 44 7.9 1
(BX936380) Zebrafish DNA sequence from clone CH211-203K17 in... 44 7.9 1
(BX936341) Zebrafish DNA sequence from clone CH211-149C18 in... 44 7.9 1
(BX890570) Zebrafish DNA sequence from clone DKEYP-7F1 in li... 44 7.9 1
(BX682556) Zebrafish DNA sequence from clone DKEY-105I19 in ... 44 7.9 1
(BX666066) Zebrafish DNA sequence from clone CH211-135A19 in... 44 7.9 1
(BX664707) Zebrafish DNA sequence from clone DKEYP-74B6 in l... 44 7.9 1
(BX649575) Zebrafish DNA sequence from clone CH211-215H12 in... 44 7.9 1
(BX649347) Zebrafish DNA sequence from clone DKEY-14K9 in li... 44 7.9 1
(BX548033) Zebrafish DNA sequence from clone CH211-232E6 in ... 44 7.9 1
(BX545917) Zebrafish DNA sequence from clone DKEY-27J13 in l... 44 7.9 1
(BX510353) Zebrafish DNA sequence from clone DKEY-201E17 in ... 44 7.9 1
(BX510307) Zebrafish DNA sequence from clone DKEY-9F17 in li... 44 7.9 1
(BX470150) Zebrafish DNA sequence from clone DKEY-164K14 in ... 44 7.9 1
(BX469913) Zebrafish DNA sequence from clone DKEY-237G5 in l... 44 7.9 1
(BX324202) Zebrafish DNA sequence from clone CH211-158G9 in ... 44 7.9 1
(BX322544) Zebrafish DNA sequence from clone DKEY-27N14 in l... 44 7.9 1
(BX294656) Zebrafish DNA sequence from clone CH211-238M13. 44 7.9 1
(BX276115) Zebrafish DNA sequence from clone DKEY-274M17 in ... 44 7.9 1
(BX276112) Zebrafish DNA sequence from clone CH211-220I12 in... 44 7.9 1
(BX248111) Zebrafish DNA sequence from clone DKEY-22L11 in l... 44 7.9 1
(BX088560) Zebrafish DNA sequence from clone DKEY-237O15 in ... 44 7.9 1
(BX005463) Zebrafish DNA sequence from clone CH211-177H19 in... 44 7.9 1
(BX005378) Zebrafish DNA sequence from clone DKEY-40H20 in l... 44 7.9 1
(BX005065) Zebrafish DNA sequence from clone CH211-163B2 in ... 44 7.9 1
(BX000434) Zebrafish DNA sequence from clone CH211-2E18. 44 7.9 1
(AL935192) Zebrafish DNA sequence from clone CH211-252B2. 44 7.9 1
(AL928814) Zebrafish DNA sequence from clone CH211-149O12 in... 44 7.9 1
(AL831748) Zebrafish DNA sequence from clone DKEY-70P6 in li... 44 7.9 1
(AC188310) Taeniopygia guttata chromosome UNK clone TG_Ba-28... 44 7.9 1
(AB075928) Danio rerio CNR family (zCNRv1, zCNRv2, zCNRv3, z... 44 7.9 1
(BV047663) S212P6069FD1.T0 CZECHII/Ei Mus musculus STS genom... 44 7.9 1
(AL928560) Mouse DNA sequence from clone RP23-353N23 on chro... 44 7.9 1
(AC160137) Mus musculus BAC clone RP23-136A1 from chromosome... 44 7.9 1
(AC155824) Mus musculus BAC clone RP23-136L1 from chromosome... 44 7.9 1
(AC154686) Mus musculus BAC clone RP24-327C20 from chromosom... 44 7.9 1
(AC134166) Rattus norvegicus 2 BAC CH230-355N20 (Children's ... 44 7.9 1
(AC116473) Mus musculus chromosome 8, clone RP23-385E22, com... 44 7.9 1
(AC115760) Mus musculus chromosome 14, clone RP23-62M14, com... 44 7.9 1
(AC115714) Mus musculus chromosome 12, clone RP23-477C24, co... 44 7.9 1
(AC102440) Mus musculus chromosome 1, clone RP24-146C18, com... 44 7.9 1
(AC192129) Pan troglodytes BAC clone CH251-621O12 from chrom... 44 7.9 1
(AC006582) Pan troglodytes 12cp12 BAC RPCI43-77C18 (Roswell ... 44 7.9 1
(EU669439) Vitis hybrid cultivar Regent VRP1-1, VRP1-2, and ... 44 7.9 1
(AY022530) Oryza sativa microsatellite MRG4855 containing (A... 44 7.9 1
(AP008212) Oryza sativa (japonica cultivar-group) genomic DN... 44 7.9 1
(AP007171) Aspergillus oryzae RIB40 genomic DNA, SC011. 44 7.9 1
(AP004862) Oryza sativa Japonica Group genomic DNA, chromoso... 44 7.9 1
(AM487803) Vitis vinifera contig VV78X097866.6, whole genome... 44 7.9 1
(AM480912) Vitis vinifera contig VV78X063627.6, whole genome... 44 7.9 1
(AM479600) Vitis vinifera contig VV78X190916.9, whole genome... 44 7.9 1
(AM468072) Vitis vinifera contig VV78X275177.8, whole genome... 44 7.9 1
(AM466373) Vitis vinifera contig VV78X006045.6, whole genome... 44 7.9 1
(AM463776) Vitis vinifera, whole genome shotgun sequence, co... 44 7.9 1
(AM462608) Vitis vinifera contig VV78X130645.4, whole genome... 44 7.9 1
(AM460560) Vitis vinifera contig VV78X113439.41, whole genom... 44 7.9 1
(AM459852) Vitis vinifera, whole genome shotgun sequence, co... 44 7.9 1
(AM457395) Vitis vinifera contig VV78X134140.10, whole genom... 44 7.9 1
(AM447559) Vitis vinifera contig VV78X046893.4, whole genome... 44 7.9 1

>(AC115608) Dictyostelium discoideum chromosome 2 map 6199819-6206243
strain AX4, complete sequence.
Length = 6424

Score = 617 bits (311), Expect(5) = 0.0
Identities = 313/314 (99%)
Strand = Plus / Plus


Query: 124 caatttcaactncaactgtgaatgcattgacttgtgaattatgtcaattctcagttaaag 183
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5244 caatttcaactacaactgtgaatgcattgacttgtgaattatgtcaattctcagttaaag 5303


Query: 184 cagctgaagatttagttacacaaaatttcacacaaagtcaaattattccttatttagatt 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5304 cagctgaagatttagttacacaaaatttcacacaaagtcaaattattccttatttagatt 5363


Query: 244 ccgcttgttcactattaccaaatcaatgggctagtaattgtgaaattattgtaaatacct 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5364 ccgcttgttcactattaccaaatcaatgggctagtaattgtgaaattattgtaaatacct 5423


Query: 304 atggtttatcaatgattaaattagtattagaaaatgaaacaccagaagttgcttgtactc 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5424 atggtttatcaatgattaaattagtattagaaaatgaaacaccagaagttgcttgtactc 5483


Query: 364 aattaggtctttgtgggtcaaattcattctttacagaaactaaaaaagaaactttaggaa 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5484 aattaggtctttgtgggtcaaattcattctttacagaaactaaaaaagaaactttaggaa 5543


Query: 424 aatggcattggaat 437
||||||||||||||
Sbjct: 5544 aatggcattggaat 5557

Score = 287 bits (145), Expect(5) = 0.0
Identities = 154/157 (98%)
Strand = Plus / Plus


Query: 448 tttaactccactcaagaaattagaatgtagtgcttgtcattttgctgatggtaaagctga 507
||||| |||| |||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 5566 tttaaatccaatcaagaaattagaatgtagtgcttgtcattttgctgttggtaaagctga 5625


Query: 508 aaatgttgtaaataaagatattaataccgcaagagcatatgttgatggccaatgtgatac 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5626 aaatgttgtaaataaagatattaataccgcaagagcatatgttgatggccaatgtgatac 5685


Query: 568 ttttgcaattaaagaagctattcatatttgtaaaaga 604
|||||||||||||||||||||||||||||||||||||
Sbjct: 5686 ttttgcaattaaagaagctattcatatttgtaaaaga 5722

Score = 141 bits (71), Expect(5) = 0.0
Identities = 71/71 (100%)
Strand = Plus / Plus


Query: 605 attgttgataaagaaattggaagaattattactgaattaaagaaccatgaaagtaaagaa 664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5815 attgttgataaagaaattggaagaattattactgaattaaagaaccatgaaagtaaagaa 5874


Query: 665 accgtttgtaa 675
|||||||||||
Sbjct: 5875 accgtttgtaa 5885

Score = 67.9 bits (34), Expect(5) = 0.0
Identities = 34/34 (100%)
Strand = Plus / Plus


Query: 90 gaatgagattatttttattattattatcaatttt 123
||||||||||||||||||||||||||||||||||
Sbjct: 5208 gaatgagattatttttattattattatcaatttt 5241

Score = 48.1 bits (24), Expect(5) = 0.0
Identities = 24/24 (100%)
Strand = Plus / Plus


Query: 676 cgtttgtaaacatattcatatgtg 699
||||||||||||||||||||||||
Sbjct: 5877 cgtttgtaaacatattcatatgtg 5900

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 102105510
Number of Hits to DB: 877,284,588
Number of extensions: 60995854
Number of successful extensions: 8885133
Number of sequences better than 10.0: 926
Length of query: 775
Length of database: 101,790,757,118
Length adjustment: 24
Effective length of query: 751
Effective length of database: 99,340,224,878
Effective search space: 74604508883378
Effective search space used: 74604508883378
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)

protein update 2009. 7.30
Homology vs Protein
Query= Contig-U04633-1 (Contig-U04633-1Q) /CSM_Contig/Contig-U04633-1Q.Seq.d
(775 letters)

Database: nrp_A
3,268,448 sequences; 1,061,185,681 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

AC115608_3(AC115608|pid:none) Dictyostelium discoideum chromosom... 216 2e-96
(P20097) RecName: Full=Saposin-C; AltName: Full=Co-beta-glucosid... 77 8e-13
BC105409_1(BC105409|pid:none) Bos taurus prosaposin, mRNA (cDNA ... 74 5e-12
S21770(S21770)saposin-C - bovine 73 1e-11
AB209776_1(AB209776|pid:none) Homo sapiens mRNA for prosaposin v... 70 6e-11
AK223290_1(AK223290|pid:none) Homo sapiens mRNA for prosaposin (... 70 6e-11
CR861454_1(CR861454|pid:none) Pongo abelii mRNA; cDNA DKFZp459G1... 70 6e-11
M60258_1(M60258|pid:none) Human mutant cerebroside sulfate activ... 70 6e-11
AX704807_1(AX704807|pid:none) Sequence 39 from Patent WO03014151. 70 6e-11
AK299184_1(AK299184|pid:none) Homo sapiens cDNA FLJ54136 complet... 70 6e-11
(Q6IBQ6) RecName: Full=Proactivator polypeptide; Contains: Rec... 70 6e-11
M60257_1(M60257|pid:none) Human mutant cerebroside sulfate activ... 70 6e-11
X57108_1(X57108|pid:none) Human gene for cerebroside sulfate act... 70 6e-11
AY892719_1(AY892719|pid:none) Synthetic construct Homo sapiens c... 70 6e-11
CR861144_1(CR861144|pid:none) Pongo abelii mRNA; cDNA DKFZp459J1... 70 1e-10
AB170870_1(AB170870|pid:none) Macaca fascicularis brain cDNA clo... 69 1e-10
AB169527_1(AB169527|pid:none) Macaca fascicularis brain cDNA, cl... 69 1e-10
CR456746_1(CR456746|pid:none) Homo sapiens full open reading fra... 69 2e-10
AY815893_1(AY815893|pid:none) Schistosoma japonicum SJCHGC01869 ... 66 1e-09
AY811214_1(AY811214|pid:none) Schistosoma japonicum clone SJCHGC... 66 1e-09
BC054988_1(BC054988|pid:none) Xenopus laevis hypothetical protei... 65 3e-09
BT045327_1(BT045327|pid:none) Salmo salar clone ssal-rgf-518-210... 63 9e-09
BT058972_1(BT058972|pid:none) Salmo salar clone ssal-rgf-517-167... 63 9e-09
AK167719_1(AK167719|pid:none) Mus musculus 15 days pregnant adul... 62 2e-08
(Q61207) RecName: Full=Sulfated glycoprotein 1; Short=S... 62 2e-08
U57999_1(U57999|pid:none) Mus musculus prosaposin (psap\SGP-1) g... 62 2e-08
AK159722_1(AK159722|pid:none) Mus musculus osteoclast-like cell ... 62 2e-08
BC080997_1(BC080997|pid:none) Xenopus laevis MGC80725 protein, m... 62 2e-08
AK153404_1(AK153404|pid:none) Mus musculus bone marrow macrophag... 62 2e-08
AK088369_1(AK088369|pid:none) Mus musculus 2 days neonate thymus... 62 2e-08
AK149785_1(AK149785|pid:none) Mus musculus bone marrow macrophag... 62 2e-08
AK152280_1(AK152280|pid:none) Mus musculus bone marrow macrophag... 62 2e-08
AK167902_1(AK167902|pid:none) Mus musculus CRL-1722 L5178Y-R cDN... 62 2e-08
AK159164_1(AK159164|pid:none) Mus musculus osteoclast-like cell ... 62 2e-08
AK159634_1(AK159634|pid:none) Mus musculus osteoclast-like cell ... 62 2e-08
AK167073_1(AK167073|pid:none) Mus musculus blastocyst blastocyst... 62 2e-08
BT045905_1(BT045905|pid:none) Salmo salar clone ssal-rgf-536-147... 62 3e-08
CR855698_1(CR855698|pid:none) Xenopus tropicalis finished cDNA, ... 61 5e-08
(P10960) RecName: Full=Sulfated glycoprotein 1; Short=S... 60 1e-07
BC061759_1(BC061759|pid:none) Rattus norvegicus prosaposin, mRNA... 60 1e-07
CR388420_1(CR388420|pid:none) Zebrafish DNA sequence from clone ... 59 2e-07
AF108656_1(AF108656|pid:none) Gallus gallus prosaposin mRNA, com... 59 2e-07
BC056717_1(BC056717|pid:none) Danio rerio prosaposin, mRNA (cDNA... 59 2e-07
(O13035) RecName: Full=Proactivator polypeptide; Contains: Rec... 59 2e-07
S71616_1(S71616|pid:none) prosaposin [mice, mRNA, 2593 nt]. 59 2e-07
AF276996_1(AF276996|pid:none) Danio rerio lysosomal cofactor/neu... 59 2e-07
FN357292_36(FN357292|pid:none) Schistosoma mansoni genome sequen... 59 2e-07
AF162129_1(AF162129|pid:none) Drosophila melanogaster ecdysone d... 57 5e-07
U66367_1(U66367|pid:none) Dictyostelium discoideum SapA (sapA) m... 52 6e-07
AC116956_84(AC116956|pid:none) Dictyostelium discoideum chromoso... 46 6e-07
AJ719872_1(AJ719872|pid:none) Gallus gallus mRNA for hypothetica... 57 7e-07
BC155325_1(BC155325|pid:none) Danio rerio cDNA clone IMAGE:70680... 57 7e-07
CT033825_6(CT033825|pid:none) Zebrafish DNA sequence from clone ... 57 7e-07
DQ062781_1(DQ062781|pid:none) Drosophila simulans saposin-relate... 57 9e-07
AF175768_1(AF175768|pid:none) Dictyostelium discoideum SAPLIP C ... 55 3e-06
AB170090_1(AB170090|pid:none) Macaca fascicularis brain cDNA clo... 54 6e-06
CR859906_1(CR859906|pid:none) Pongo abelii mRNA; cDNA DKFZp468M2... 53 1e-05
DQ363441_1(DQ363441|pid:none) Ictalurus punctatus clone C111BF07... 53 1e-05
(Q6NUJ1) RecName: Full=Proactivator polypeptide-like 1; Contains... 52 2e-05
BC068579_1(BC068579|pid:none) Homo sapiens prosaposin-like 1, mR... 52 2e-05
BC119540_1(BC119540|pid:none) Mus musculus prosaposin-like 1, mR... 50 8e-05
(Q8C1C1) RecName: Full=Proactivator polypeptide-like 1; Contains... 50 8e-05
EZ000561_1(EZ000561|pid:none) TSA: Culex tarsalis Ctar-515 sapos... 50 8e-05
BC091483_1(BC091483|pid:none) Homo sapiens prosaposin, mRNA (cDN... 49 1e-04
AB008449_1(AB008449|pid:none) Bombyx mori mRNA for BmP109, compl... 47 9e-04
AF196308_1(AF196308|pid:none) Naegleria fowleri naegleriapore A ... 45 0.002
BT075327_1(BT075327|pid:none) Osmerus mordax clone omor-eva-511-... 45 0.002
AF196309_1(AF196309|pid:none) Naegleria fowleri naegleriapore B ... 45 0.003
X57107_1(X57107|pid:none) Human gene for cerebroside sulfate act... 44 0.006
DQ666082_1(DQ666082|pid:none) Artemia franciscana clone 13RP1.05... 44 0.006
B89567(B89567)protein T08A9.7 [imported] - Caenorhabditis elegans 35 0.006
BX537304_6(BX537304|pid:none) Zebrafish DNA sequence from clone ... 44 0.008
EF585930_1(EF585930|pid:none) Sonneratia ovata isolate Sonn529_3... 43 0.010
GQ121971_1(GQ121971|pid:none) Sonneratia alba clone Sa529_sanya ... 43 0.013
AL132968_11(AL132968|pid:none) Arabidopsis thaliana DNA chromoso... 42 0.022
(Q24824) RecName: Full=Pore-forming peptide ameobapore B; AltNam... 41 0.037
U40417_6(U40417|pid:none) Caenorhabditis elegans cosmid T08A9, c... 41 0.049
BT003256_1(BT003256|pid:none) Drosophila melanogaster LD25144 fu... 40 0.064
EU960507_1(EU960507|pid:none) Zea mays clone 225521 surfactant p... 40 0.11
BC149798_1(BC149798|pid:none) Bos taurus prosaposin-like 1, mRNA... 39 0.14
S47096(S47096)cynarase (EC 3.4.23.-) - cardoon 39 0.24
T12049(T12049) cyprosin (EC 3.4.23.-) - cardoon (fragment) &X69... 39 0.24
EF087704_1(EF087704|pid:none) Picea sitchensis clone WS02736_G22... 39 0.24
(P40782) RecName: Full=Cyprosin; EC=3.4.23.-; Flags: Pr... 39 0.24
AY485648_1(AY485648|pid:none) Trichinella spiralis prosaposin mR... 38 0.32
CP001577_36(CP001577|pid:none) Micromonas sp. RCC299 chromosome ... 38 0.32
(O18823) RecName: Full=Acyloxyacyl hydrolase; EC=3.1.1.... 38 0.32
AB045893_1(AB045893|pid:none) Nepenthes alata NaAP3 mRNA for asp... 38 0.41
DQ841161_1(DQ841161|pid:none) Xenopus laevis surfactant protein ... 38 0.41
BC170328_1(BC170328|pid:none) Xenopus laevis surfactant protein ... 38 0.41
BC123315_1(BC123315|pid:none) Xenopus laevis hypothetical protei... 38 0.41
T27869(T27869)sphingomyelin phosphodiesterase (EC 3.1.4.12), aci... 37 0.54
(Q23498) RecName: Full=Sphingomyelin phosphodiesterase 2; ... 37 0.54
BT042292_1(BT042292|pid:none) Zea mays full-length cDNA clone ZM... 37 0.70
AJ313384_1(AJ313384|pid:none) Theobroma cacao mRNA for aspartic ... 37 0.92
(P17129) RecName: Full=Pulmonary surfactant-associated protein B... 37 0.92
EF678577_1(EF678577|pid:none) Picea sitchensis clone WS02928_J09... 36 1.2
U40797_4(U40797|pid:none) Caenorhabditis elegans cosmid C28C12, ... 36 1.6
AF082528_1(AF082528|pid:none) Entamoeba dispar strain SAW 142 po... 36 1.6
AC117075_38(AC117075|pid:none) Dictyostelium discoideum chromoso... 36 1.6
EF676352_1(EF676352|pid:none) Picea sitchensis clone WS02732_P05... 36 1.6
AF220198_1(AF220198|pid:none) Vitis riparia putative protein mRN... 36 1.6
T15674(T15674)hypothetical protein C28C12.7 - Caenorhabditis ele... 36 1.6
U40797_3(U40797|pid:none) Caenorhabditis elegans cosmid C28C12, ... 36 1.6
U51036_1(U51036|pid:none) Arabidopsis thaliana aspartic proteina... 35 2.1
AB069959_1(AB069959|pid:none) Glycine max soyAP1 mRNA for aspart... 35 2.1
S41400(S41400)aspartic proteinase (EC 3.4.23.-) - wild cabbage (... 35 2.7
T14446(T14446) aspartic proteinase (EC 3.4.23.-) - wild cabbage ... 35 2.7
U40417_4(U40417|pid:none) Caenorhabditis elegans cosmid T08A9, c... 35 2.7
AC000375_21(AC000375|pid:none) Sequence of BAC F19K23 from Arabi... 35 3.5
AK317285_1(AK317285|pid:none) Arabidopsis thaliana AT1G62290 mRN... 35 3.5
AB219968_1(AB219968|pid:none) Triticum aestivum WAP1 mRNA for as... 35 3.5
D12777_1(D12777|pid:none) Oryza sativa Japonica Group mRNA for a... 35 3.5
(P42211) RecName: Full=Aspartic proteinase; EC=3.4.23.-... 35 3.5
C89567(C89567)protein T08A9.10 [imported] - Caenorhabditis elegans 35 3.5
EF585741_1(EF585741|pid:none) Sonneratia alba isolate Sonn64_1 a... 34 4.6
(P42210) RecName: Full=Phytepsin; EC=3.4.23.40; AltName... 34 4.6
EF585743_1(EF585743|pid:none) Sonneratia ovata isolate Sonn64_3 ... 34 4.6
AM461662_3(AM461662|pid:none) Vitis vinifera contig VV78X237399.... 34 4.6
EF585744_1(EF585744|pid:none) Sonneratia apetala isolate Sonn64_... 34 4.6
S49349(S49349) cyprosin (EC 3.4.23.-) - cardoon &X81984_1(X8198... 34 4.6
EF576285_1(EF576285|pid:none) Oryza sativa (indica cultivar-grou... 34 6.0
T11686(T11686)aspartic proteinase (EC 3.4.23.-) - cowpea 34 6.0
DQ648018_1(DQ648018|pid:none) Nicotiana tabacum aspartic proteas... 34 6.0
AF287258_1(AF287258|pid:none) Vigna unguiculata aspartic protein... 34 6.0
D32144_1(D32144|pid:none) Rice mRNA for aspartic protease, compl... 33 7.8
FN357320_29(FN357320|pid:none) Schistosoma mansoni genome sequen... 33 7.8
FN357320_30(FN357320|pid:none) Schistosoma mansoni genome sequen... 33 7.8
(Q42456) RecName: Full=Aspartic proteinase oryzasin-1; ... 33 7.8
AB021787_1(AB021787|pid:none) Pyrus pyrifolia PPFRU11 mRNA for a... 33 7.8

>AC115608_3(AC115608|pid:none) Dictyostelium discoideum chromosome 2
map 6199819-6206243 strain AX4, complete sequence.
Length = 200

Score = 216 bits (549), Expect(2) = 2e-96
Identities = 103/105 (98%), Positives = 104/105 (99%)
Frame = +3

Query: 123 SISTXTVNALTCELCQFSVKAAEDLVTQNFTQSQIIPYLDSACSLLPNQWASNCEIIVNT 302
+IST TVNALTCELCQFSVKAAEDLVTQNFTQSQIIPYLDSACSLLPNQWASNCEIIVNT
Sbjct: 12 TISTTTVNALTCELCQFSVKAAEDLVTQNFTQSQIIPYLDSACSLLPNQWASNCEIIVNT 71

Query: 303 YGLSMIKLVLENETPEVACTQLGLCGSNSFFTETKKETLGKWHWN 437
YGLSMIKLVLENETPEVACTQLGLCGSNSFFTETKKETLGKWHWN
Sbjct: 72 YGLSMIKLVLENETPEVACTQLGLCGSNSFFTETKKETLGKWHWN 116

Score = 160 bits (405), Expect(2) = 2e-96
Identities = 78/84 (92%), Positives = 79/84 (94%)
Frame = +2

Query: 449 LTPLKKLECSACHFADGKAENVVNKDINTARAYVDGQCDTFAIKEAIHICKRIVDKEIGR 628
L P+KKLECSACHFA GKAENVVNKDINTARAYVDGQCDTFAIKEAIHICKRIVDKEIGR
Sbjct: 120 LNPIKKLECSACHFAVGKAENVVNKDINTARAYVDGQCDTFAIKEAIHICKRIVDKEIGR 179

Query: 629 IITELKNHESKETVCNVCKHIHMC 700
IITELKNHESKET VCKHIHMC
Sbjct: 180 IITELKNHESKET---VCKHIHMC 200

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3268448
Number of Hits to DB: 870,089,857
Number of extensions: 14147048
Number of successful extensions: 36344
Number of sequences better than 10.0: 130
Number of HSP's gapped: 36298
Number of HSP's successfully gapped: 254
Length of query: 258
Length of database: 1,061,185,681
Length adjustment: 126
Effective length of query: 132
Effective length of database: 649,361,233
Effective search space: 85715682756
Effective search space used: 85715682756
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 31 (16.5 bits)

PSORT

psg: 0.75 gvh: 0.50 alm: 0.39 top: 0.53 tms: 0.00 mit: 0.26 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

56.0 %: cytoplasmic
36.0 %: nuclear
4.0 %: mitochondrial
4.0 %: peroxisomal

>> prediction for Contig-U04633-1 is cyt

VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 2
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0