>Contig-U04628-1 (Contig-U04628-1Q) /CSM_Contig/Contig-U04628-1Q.Seq.d
AATGAAAGTTAAAATTGAATTAAGTGGTGGATTAGAATTATTATTTGATA
AAAAGAAAGTACACGAAATTGAATTTTCAGATAAGAATGAAATTCCATTA
AAAGATTTAATTTTATATATGAGAGATAACTTACTCAAAGAAAGATCAGA
GTTATTTGTAGTTGATGATACAGTTCGTCCAGGTATTTTAGTTTTAATTA
ATGACGCAGATTGGGAATTATTTGGTGGTATCTCATACAATGTAGAAGAT
AAAGATACAATCATTTTCATTTCAACTTTACATGGAGGTTAAAAATTTTA
ATTATAAATACAAATATGATTTCAACTTTACATGGAGGTTAAAAATTTTA
ATTATAAAT

est1=SSB841E,1,360

MKVKIELSGGLELLFDKKKVHEIEFSDKNEIPLKDLILYMRDNLLKERSELFVVDDTVRP
GILVLINDADWELFGGISYNVEDKDTIIFISTLHGG*kf*l*iqi*fqlymevknfnyk

Frame A:
nes*n*ikwwiriii**kestrn*ifr*e*nsikrfnfiyer*ltqrkirvics**ysss
ryfsfn**rrlgiiwwyliqcrr*rynhfhfnftwrlkiliintnmistlhgg*kf*l*


Frame B:
MKVKIELSGGLELLFDKKKVHEIEFSDKNEIPLKDLILYMRDNLLKERSELFVVDDTVRP
GILVLINDADWELFGGISYNVEDKDTIIFISTLHGG*kf*l*iqi*fqlymevknfnyk


Frame C:
*klkln*vvd*nyylikrkytklnfqirmkfh*ki*fyi*eityskkdqsyl*lmiqfvq
vf*f*lmtqignylvvshtm*kikiqsfsfqlymevknfnykykydfnftwrlkiliin

Query= Contig-U04628-1 (Contig-U04628-1Q)
/CSM_Contig/Contig-U04628-1Q.Seq.d
         (359 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U04628-1 (Contig-U04628-1Q) /CSM_Contig/Conti...   712  0.0
Contig-U10384-1 (Contig-U10384-1Q) /CSM_Contig/Conti...    40  0.002
Contig-U09720-1 (Contig-U09720-1Q) /CSM_Contig/Conti...    38  0.006
Contig-U06351-1 (Contig-U06351-1Q) /CSM_Contig/Conti...    38  0.006
Contig-U12134-1 (Contig-U12134-1Q) /CSM_Contig/Conti...    36  0.025
Contig-U12044-1 (Contig-U12044-1Q) /CSM_Contig/Conti...    36  0.025
Contig-U11982-1 (Contig-U11982-1Q) /CSM_Contig/Conti...    36  0.025
Contig-U11416-1 (Contig-U11416-1Q) /CSM_Contig/Conti...    36  0.025
Contig-U11439-1 (Contig-U11439-1Q) /CSM_Contig/Conti...    34  0.097

>Contig-U04628-1 (Contig-U04628-1Q) /CSM_Contig/Contig-U04628-1Q.Seq.d
          Length = 359

 Score =  712 bits (359), Expect = 0.0
 Identities = 359/359 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   aatgaaagttaaaattgaattaagtggtggattagaattattatttgataaaaagaaagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   aatgaaagttaaaattgaattaagtggtggattagaattattatttgataaaaagaaagt 60

                                                                       
Query: 61  acacgaaattgaattttcagataagaatgaaattccattaaaagatttaattttatatat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  acacgaaattgaattttcagataagaatgaaattccattaaaagatttaattttatatat 120

                                                                       
Query: 121 gagagataacttactcaaagaaagatcagagttatttgtagttgatgatacagttcgtcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gagagataacttactcaaagaaagatcagagttatttgtagttgatgatacagttcgtcc 180

                                                                       
Query: 181 aggtattttagttttaattaatgacgcagattgggaattatttggtggtatctcatacaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 aggtattttagttttaattaatgacgcagattgggaattatttggtggtatctcatacaa 240

                                                                       
Query: 241 tgtagaagataaagatacaatcattttcatttcaactttacatggaggttaaaaatttta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tgtagaagataaagatacaatcattttcatttcaactttacatggaggttaaaaatttta 300

                                                                      
Query: 301 attataaatacaaatatgatttcaactttacatggaggttaaaaattttaattataaat 359
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 attataaatacaaatatgatttcaactttacatggaggttaaaaattttaattataaat 359


>Contig-U10384-1 (Contig-U10384-1Q) /CSM_Contig/Contig-U10384-1Q.Seq.d
          Length = 1286

 Score = 40.1 bits (20), Expect = 0.002
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 340 taaaaattttaattataaat 359
           ||||||||||||||||||||
Sbjct: 17  taaaaattttaattataaat 36


 Score = 40.1 bits (20), Expect = 0.002
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 290 taaaaattttaattataaat 309
           ||||||||||||||||||||
Sbjct: 17  taaaaattttaattataaat 36


>Contig-U09720-1 (Contig-U09720-1Q) /CSM_Contig/Contig-U09720-1Q.Seq.d
          Length = 1333

 Score = 38.2 bits (19), Expect = 0.006
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 239 aatgtagaagataaagatacaat 261
           |||| ||||||||||||||||||
Sbjct: 665 aatgaagaagataaagatacaat 687


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 11,361
Number of Sequences: 6905
Number of extensions: 11361
Number of successful extensions: 1412
Number of sequences better than 10.0: 392
length of query: 359
length of database: 5,674,871
effective HSP length: 16
effective length of query: 343
effective length of database: 5,564,391
effective search space: 1908586113
effective search space used: 1908586113
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)

Query= Contig-U04628-1 (Contig-U04628-1Q) /CSM_Contig/Contig-U04628-1Q.Seq.d
         (359 letters)

Database: ddbj_A
           102,105,510 sequences; 101,790,757,118 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU036937) Dictyostelium discoideum slug cDNA, clone SSB841.      515   e-142  1
(AU071588) Dictyostelium discoideum slug cDNA, clone SSB841.      476   e-130  1
(FF570425) TTCA328TG Tetrahymena thermophila CU428 log phase...    50   5e-05  2
(EV842509) TT1DW35TH Tetrahymena thermophila SB210 cDNA libr...    50   5e-05  2
(EZ012858) TSA: Acropora millepora SeqIndex15129, mRNA seque...    42   6e-05  2
(FC657927) CAXW15677.rev CAXW Lottia gigantea from female go...    46   6e-05  2
(BM027475) GIT0000838 Root-induced cDNA library from Glomus ...    42   8e-04  2
(BH706223) BOHUZ70TF BO_2_3_KB Brassica oleracea genomic clo...    38   9e-04  2
(BH421784) BOGTK80TR BOGT Brassica oleracea genomic clone BO...    38   9e-04  2
(AL137186) Human DNA sequence from clone RP11-536K7 on chrom...    40   0.003  2
(AY316538) Homo sapiens interleukin 15 receptor, alpha (IL15...    40   0.003  2
(AR659674) Sequence 715 from patent US 6900016.                    40   0.003  2
(AR659580) Sequence 621 from patent US 6900016.                    40   0.003  2
(AX345925) Sequence 996 from Patent WO0200928.                     40   0.003  2
(AX345924) Sequence 995 from Patent WO0200928.                     40   0.003  2
(FC774724) CBBN8528.fwd CBBN Lottia gigantea 3,4,5,6.5d Larv...    40   0.003  2
(FC774723) CBBN8528.rev CBBN Lottia gigantea 3,4,5,6.5d Larv...    40   0.003  2
(AW151602) xf66e03.x1 NCI_CGAP_Gas4 Homo sapiens cDNA clone ...    40   0.003  2
(BA000026) Mycoplasma penetrans HF-2 DNA, complete genome.         34   0.004  13
(CU468101) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    46   0.012  6
(AF063866) Melanoplus sanguinipes entomopoxvirus, complete g...    32   0.022  9
(CU469464) Candidatus Phytoplasma mali strain AT complete ch...    36   0.025  11
(FJ171325) Polystoechotes punctatus mitochondrion, complete ...    44   0.026  4
(CP000053) Rickettsia felis URRWXCal2, complete genome.            40   0.033  2
(CP000683) Rickettsia massiliae MTU5, complete genome.             40   0.033  2
(CP000766) Rickettsia rickettsii str. Iowa, complete genome.       40   0.033  2
(CP000848) Rickettsia rickettsii str. 'Sheila Smith', comple...    40   0.033  2
(AC148008) Mus musculus BAC clone RP23-253C14 from chromosom...    34   0.037  2
(AC144794) Mus musculus BAC clone RP24-463B6 from chromosome...    34   0.037  2
(AX356494) Sequence 128 from Patent WO0181622.                     30   0.047  8
(AX347027) Sequence 2098 from Patent WO0200928.                    30   0.047  8
(AF538053) Monosiga brevicollis mitochondrion, complete genome.    34   0.052  6
(AY521251) Aleurodicus dugesii mitochondrion, complete genome.     34   0.058  5
(U10927) Staphylococcus aureus M type 1 capsular polysacchar...    40   0.060  5
(AC181370) Strongylocentrotus purpuratus clone R3-49G20, WOR...    38   0.063  4
(AM635534) Entamoeba dispar GSS, clone dispar14h02.p1k.            36   0.063  3
(EJ970639) 1093022078558 Global-Ocean-Sampling_GS-30-02-01-1...    42   0.078  2
(EJ945417) 1093018910873 Global-Ocean-Sampling_GS-30-02-01-1...    42   0.080  2
(AL929357) Plasmodium falciparum strain 3D7, chromosome 9; s...    36   0.085  8
(AY262277) Actinobacillus actinomycetemcomitans aggregation ...    40   0.087  2
(EU877949) Cyphon sp. BT0012 mitochondrion, complete genome.       32   0.088  4
(FJ266023) Oryza granulata clone OG_ABa077F15_032P05, comple...    36   0.089  4
(CU464137) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    38   0.090  5
(AX344551) Sequence 2 from Patent WO0200932.                       34   0.098  8
(FB571361) Sequence 228 from Patent EP1865317.                     32   0.11   6
(FB571305) Sequence 172 from Patent EP1865317.                     32   0.11   6
(CP000409) Rickettsia canadensis str. McKiel, complete genome.     38   0.12   2
(AM456975) Vitis vinifera contig VV78X235781.5, whole genome...    34   0.13   4
(EB826422) 1083019 KZ01 Plodia interpunctella cDNA clone 553...    30   0.15   3
(AC116986) Dictyostelium discoideum chromosome 2 map 2234041...    34   0.17   9
(EJ250907) 1095344031541 Global-Ocean-Sampling_GS-27-01-01-1...    34   0.17   2
(BH690278) BOMFN10TF BO_2_3_KB Brassica oleracea genomic clo...    38   0.17   2
(BH456540) BOGCL68TR BOGC Brassica oleracea genomic clone BO...    38   0.17   2
(BH526613) BOGTC01TF BOGT Brassica oleracea genomic clone BO...    38   0.17   2
(CT967319) M.truncatula DNA sequence from clone MTH2-59J17 o...    38   0.18   5
(AY027698) Chrysomela salicivorax 12S ribosomal RNA gene, pa...    38   0.18   2
(AE014849) Plasmodium falciparum 3D7 chromosome 12, section ...    32   0.19   6
(CU928799) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    34   0.20   7
(AP009180) Candidatus Carsonella ruddii PV DNA, complete gen...    36   0.21   7
(AC161008) Pan troglodytes BAC clone CH251-634F15 from chrom...    48   0.23   1
(AC002068) Homo sapiens BAC clone CTA-242D1 from 7, complete...    48   0.23   1
(FH205442) CHO_OF3139xb22r1.ab1 CHO_OF3 Nicotiana tabacum ge...    48   0.23   1
(FH205358) CHO_OF3139xb22f1.ab1 CHO_OF3 Nicotiana tabacum ge...    48   0.23   1
(AM639225) Entamoeba dispar GSS, clone dispar60g05.q1k.            48   0.23   1
(ED807295) ML__Ba0019L02r ML__Ba Mimulus lewisii genomic, ge...    48   0.23   1
(AX458577) Sequence 123 from Patent WO0246454.                     34   0.23   6
(AC133217) Oryza sativa (japonica cultivar-group) chromosome...    42   0.23   4
(AB360979) Culicoides oxystoma mitochondrial DNA, large subu...    32   0.23   4
(AM633106) Entamoeba dispar GSS, clone dispar98a10.q1k.            34   0.23   3
(CT583655) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    40   0.25   5
(AG577306) Mus musculus molossinus DNA, clone:MSMg01-501M18....    38   0.26   2
(AC131758) Mus musculus BAC clone RP24-211E5 from chromosome...    46   0.27   6
(EF221760) Metaseiulus occidentalis mitochondrion, complete ...    40   0.27   4
(ED117443) AUAC-aax58b02.g1 Ascaris suum whole genome shotgu...    44   0.28   2
(EJ962808) 1093022016278 Global-Ocean-Sampling_GS-30-02-01-1...    42   0.29   2
(BD428926) Method and nucleic acids for pharmacogenomic meth...    32   0.30   5
(AX348405) Sequence 100 from Patent WO0202806.                     32   0.30   5
(AX345843) Sequence 914 from Patent WO0200928.                     32   0.30   5
(EB823740) 1109339 CC04 Plodia interpunctella cDNA clone 573...    30   0.31   3
(CR391970) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    40   0.31   4
(CC511049) CH240_354F23.TARBAC13P2 CHORI-240 Bos taurus geno...    42   0.32   2
(AC114686) Homo sapiens chromosome 17 clone RP11-1D5 map 17,...    34   0.32   6
(EB827135) 1087894 KZ01 Plodia interpunctella cDNA clone 556...    30   0.33   3
(AC116984) Dictyostelium discoideum chromosome 2 map 2567470...    36   0.33   8
(AP005672) Physcomitrella patens subsp. patens chloroplast D...    36   0.34   6
(AX344733) Sequence 158 from Patent WO0200927.                     36   0.35   4
(DD010735) Diagnosis of known genetic Parameters within the ...    36   0.38   11
(CP000123) Mycoplasma capricolum subsp. capricolum ATCC 2734...    32   0.39   12
(EB823032) 1092196 CC04 Plodia interpunctella cDNA clone 570...    30   0.40   3
(AC220639) Bos taurus clone CH240-351H11, WORKING DRAFT SEQU...    38   0.43   7
(AL929358) Plasmodium falciparum strain 3D7, chromosome 9; s...    34   0.45   8
(CP000768) Campylobacter jejuni subsp. doylei 269.97, comple...    34   0.46   11
(AC218232) Bos taurus clone CH240-28C2, WORKING DRAFT SEQUEN...    36   0.48   2
(AC096306) Rattus norvegicus clone CH230-106F8, WORKING DRAF...    34   0.49   2
(AC216945) Populus trichocarpa clone POP072-M04, complete se...    34   0.49   5
(AC230202) Bos taurus clone CH240-518C9, WORKING DRAFT SEQUE...    36   0.49   2
(CU695266) Brassica rapa subsp. pekinensis clone KBrB065I09,...    36   0.50   2
(CU695313) Brassica rapa subsp. pekinensis clone KBrH073M07,...    36   0.51   2
(AC213540) Populus trichocarpa clone POP053-A08, complete se...    30   0.52   8
(EA333167) Sequence 5659 from patent US 7306913.                   34   0.53   2
(AC115619) Homo sapiens BAC clone RP11-116D2 from 2, complet...    34   0.53   2
(DD439117) ANTISENSE MODULATION OF APOLIPOPROTEIN B EXPRESSION.    34   0.53   2
(DQ102703) Coreana raphaelis mitochondrion, complete genome.       30   0.57   5
(CU928564) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    42   0.60   6
(X70810) Euglena gracilis chloroplast complete genome.             34   0.62   6
(AF211141) Carsonella ruddii natural-host Pachypsylla celtid...    40   0.62   2
(X04682) Human hypovariable DNA 3' to apolipoprotein B gene.       34   0.63   2
(DN569216) 93902857 Sea Urchin primary mesenchyme cell cDNA ...    36   0.64   2
(S61712) Apo(B) (HVE36)=Apolipoprotein B {3' region, AT rich...    34   0.64   2
(AC123513) Dictyostelium discoideum strain AX4 chromosome 2 ...    34   0.64   6
(BZ075645) lke72c04.b1 B.oleracea002 Brassica oleracea genom...    32   0.64   2
(M23045) Figure 6. DNA sequence of three 3' apoB VNTR alleles.     34   0.64   2
(M23044) Figure 6. DNA sequence of three 3' apoB VNTR alleles.     34   0.64   2
(AX344570) Sequence 21 from Patent WO0200932.                      30   0.65   9
(AR086680) Sequence 36 from patent US 5985607.                     34   0.65   2
(J05157) Human apolipoprotein B gene hypervariable region, 3...    34   0.65   2
(M23046) Figure 6. DNA sequence of three 3' apoB VNTR alleles.     34   0.65   2
(AQ441594) HS_5138_A2_F04_SP6E RPCI-11 Human Male BAC Librar...    34   0.66   2
(CE517514) tigr-gss-dog-17000327422002 Dog Library Canis lup...    38   0.67   2
(EU024653) Polistes sp. MD1 mitochondrion, partial genome.         36   0.75   3
(AE009951) Fusobacterium nucleatum subsp. nucleatum ATCC 255...    40   0.76   14
(AJ634268) Kluyveromyces thermotolerans complete mitochondri...    36   0.79   4
(AC116979) Dictyostelium discoideum chromosome 2 map 6445720...    32   0.82   10
(AM433981) Vitis vinifera contig VV78X134009.26, whole genom...    34   0.88   4
(BX005235) Zebrafish DNA sequence from clone DKEY-68L7 in li...    46   0.89   1
(AL954133) Zebrafish DNA sequence from clone CH211-222H22.         46   0.89   1
(AC154275) Mus musculus BAC clone RP24-299G8 from chromosome...    46   0.89   1
(AM477604) Vitis vinifera, whole genome shotgun sequence, co...    46   0.89   1
(AC124136) Mus musculus clone RP23-250H5, WORKING DRAFT SEQU...    46   0.89   1
(CU466422) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    46   0.89   1
(CT027683) Zebrafish DNA sequence *** SEQUENCING CANCELLED *...    46   0.89   1
(CT027553) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    46   0.89   1
(AZ684131) ENTKQ29TR Entamoeba histolytica Sheared DNA Entam...    46   0.89   1
(AZ589068) 1M0397K18R Mouse 10kb plasmid UUGC1M library Mus ...    46   0.89   1
(ES221876) MpGVN_ag2_A05 Myzus persicae, line G006, PLRV fre...    46   0.89   1
(CX094521) EHAG041TR E. histolytica Normalized cDNA library ...    46   0.89   1
(CX086951) EHACS41TR E. histolytica Normalized cDNA library ...    46   0.89   1
(CV433836) RT2768 Chinese cabbage root library Brassica rapa...    46   0.89   1
(FD368333) CBPN46238.g1 CBPN: Subtracted channel catfish cDN...    46   0.89   1
(FD364569) CBPN4393.g1 CBPN: Subtracted channel catfish cDNA...    46   0.89   1
(FD351534) CBPN30335.g1 CBPN: Subtracted channel catfish cDN...    46   0.89   1
(ES451664) 26634 Myzus persicae 2001-12 (red), Fenton Myzus ...    46   0.89   1
(CP000393) Trichodesmium erythraeum IMS101, complete genome.       46   0.89   1
(BI505755) BB170032A10F02.5 Bee Brain Normalized/Subtracted ...    34   0.90   2
(AF513987) Glycine max clone 73P6-001 sequence.                    32   0.91   4
(ED675505) GM_WBb0005P02.f GM_WBb Glycine max genomic clone ...    34   0.93   2
(ER326335) 1092344214854 Global-Ocean-Sampling_GS-34-01-01-1...    38   0.95   2
(CP000942) Ureaplasma parvum serovar 3 str. ATCC 27815, comp...    32   0.97   10
(AF222894) Ureaplasma parvum serovar 3 str. ATCC 700970, com...    32   0.97   10
(AC173918) Atelerix albiventris clone LB4-151B11, WORKING DR...    38   0.98   3
(AC124454) Mus musculus BAC clone RP24-228I9 from chromosome...    38   1.0    3
(EJ438427) 1093015292370 Global-Ocean-Sampling_GS-28-01-01-1...    42   1.0    2
(ER630168) 1093018416460 Global-Ocean-Sampling_GS-36-01-01-2...    38   1.1    2
(EJ230072) 1092402575016 Global-Ocean-Sampling_GS-27-01-01-1...    42   1.1    2
(EJ335448) 1092963474292 Global-Ocean-Sampling_GS-28-01-01-1...    38   1.2    2
(EB824566) 1091624 CC04 Plodia interpunctella cDNA clone 569...    30   1.2    3
(AP010161) Lotus japonicus genomic DNA, clone: LjT46F23, TM1...    36   1.3    6
(AL928866) Zebrafish DNA sequence from clone DKEY-11E23 in l...    38   1.3    5
(AL772340) Zebrafish DNA sequence from clone CH211-150G2 in ...    40   1.4    5
(AM484035) Vitis vinifera contig VV78X133969.4, whole genome...    44   1.4    2
(AC116330) Dictyostelium discoideum chromosome 2 map 3191214...    32   1.4    6
(AC069426) Homo sapiens 3 BAC RP11-200O17 (Roswell Park Canc...    40   1.6    5
(AM435700) Vitis vinifera, whole genome shotgun sequence, co...    32   1.6    4
(CP000233) Lactobacillus salivarius UCC118, complete genome.       34   1.7    10
(EA048112) Sequence 3 from patent US 7154021.                      34   1.7    2
(EA048111) Sequence 2 from patent US 7154021.                      34   1.7    2
(AX196296) Sequence 3 from Patent WO0151627.                       34   1.7    2
(AX196295) Sequence 2 from Patent WO0151627.                       34   1.7    2
(GP062385) Sequence 3 from patent US 7485770.                      34   1.7    2
(GP062384) Sequence 2 from patent US 7485770.                      34   1.7    2
(AL034557) Plasmodium falciparum MAL4P1.                           32   1.7    9
(BP521921) Hydra magnipapillata cDNA, clone:hmp_19667.             38   1.8    2
(AC165544) Bos taurus clone CH240-170G20, WORKING DRAFT SEQU...    34   1.8    2
(CU694550) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    34   1.8    2
(AP004523) Lotus japonicus genomic DNA, chromosome 1, clone:...    34   1.8    4
(AC134319) Pan troglodytes clone RP43-166O9, WORKING DRAFT S...    32   1.8    2
(AL590434) Human DNA sequence from clone RP11-181E22 on chro...    32   1.8    2
(CU467597) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    34   1.8    2
(AC166348) Mus musculus chromosome 15 clone RP24-94E2, WORKI...    32   1.8    2
(AC125182) Mus musculus BAC clone RP23-293D23 from 15, compl...    32   1.8    2
(AC201630) Macaca mulatta  BAC CH250-307A20 () complete sequ...    34   1.8    2
(AC026026) Homo sapiens chromosome 1 clone RP11-10D24, WORKI...    32   1.8    2
(AC149134) Medicago truncatula clone mth2-19l15, complete se...    36   1.8    5
(AC189531) Brassica rapa subsp. pekinensis clone KBrH001D10,...    34   1.8    2
(AC181300) Strongylocentrotus purpuratus clone R3-4017D16, W...    34   1.8    2
(AM472451) Vitis vinifera contig VV78X011197.8, whole genome...    34   1.9    2
(CP000745) Methanococcus maripaludis C7, complete genome.          34   1.9    13
(CS374670) Sequence 773 from Patent WO2006034879.                  34   1.9    3
(CS374398) Sequence 501 from Patent WO2006034879.                  34   1.9    3
(CD120419) ME1-0060T-D185-C08-U.G ME1-0060 Schistosoma manso...    30   1.9    3
(AL929355) Plasmodium falciparum strain 3D7, chromosome 9; s...    32   1.9    7
(CP000776) Campylobacter hominis ATCC BAA-381, complete genome.    38   2.0    11
(AM457402) Vitis vinifera contig VV78X060614.14, whole genom...    42   2.0    3
(AC005507) Plasmodium falciparum chromosome 12 clone PFYACB8...    32   2.0    5
(AP007639) Lotus japonicus genomic DNA, chromosome 5, clone:...    36   2.0    4
(DD392040) Method and nucleic acids for the improved treatme...    34   2.1    4
(DD391766) Method and nucleic acids for the improved treatme...    34   2.1    4
(CQ807296) Sequence 746 from Patent WO2004035803.                  34   2.1    4
(CQ807022) Sequence 472 from Patent WO2004035803.                  34   2.1    4
(BD453080) Diagnosis of Diseases Associated with tumor suppr...    30   2.1    4
(AX251559) Sequence 527 from Patent WO0168912.                     30   2.1    4
(AC090012) Homo sapiens 12q BAC RP11-6F20 (Roswell Park Canc...    34   2.1    5
(FG225188) Aats02458 Antheraea assama fifth instar larval te...    34   2.2    2
(AF310893) Dictyostelium discoideum RacG (racG) gene, comple...    32   2.2    2
(CZ502566) GMW2-15H8a.g1 GMW2 Glycine max genomic, genomic s...    32   2.4    2
(EK395409) 1095469519161 Global-Ocean-Sampling_GS-31-01-01-1...    34   2.4    2
(EK366617) 1095469400545 Global-Ocean-Sampling_GS-31-01-01-1...    34   2.4    2
(ED682037) GM_WBb0015H08.r GM_WBb Glycine max genomic clone ...    32   2.4    2
(ED757682) GM_WBb0126O14.r GM_WBb Glycine max genomic clone ...    32   2.4    2
(ED751583) GM_WBb0118E11.f GM_WBb Glycine max genomic clone ...    32   2.4    2
(AC073116) Homo sapiens chromosome 15 clone RP11-577I17, WOR...    42   2.4    5
(DX264965) OR_ABa0158K20.r OR_ABa Oryza ridleyi genomic clon...    32   2.4    2
(AY027709) Chrysomela vigintipunctata 12S ribosomal RNA gene...    38   2.5    2
(AL049180) Plasmodium falciparum DNA *** SEQUENCING IN PROGR...    30   2.6    8
(EJ857393) 1093017950955 Global-Ocean-Sampling_GS-30-02-01-1...    32   2.7    3
(CU861446) Zebrafish DNA sequence from clone CH73-61D6 in li...    36   2.7    5
(AF534511) Phylloxera sp. DAD-2001a cytochrome oxidase subun...    36   2.8    2
(AC026223) Homo sapiens chromosome 10 clone RP11-548F5, comp...    36   2.8    4
(CN755651) ID0AAA16BG11RM1 ApMS Acyrthosiphon pisum cDNA clo...    36   2.8    2
(AL844509) Plasmodium falciparum chromosome 13.                    36   2.9    10
(FG208565) Aabr05289 Antheraea assama fifth instar larval br...    34   2.9    2
(AC182689) Populus trichocarpa clone Pop1-40G6, complete seq...    40   2.9    3
(CN758570) ID0AAA22CC12RM1 ApMS Acyrthosiphon pisum cDNA clo...    36   3.0    2
(CU640427) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    36   3.0    4
(AM466868) Vitis vinifera contig VV78X015400.11, whole genom...    32   3.0    4
(FP101976) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    38   3.0    3
(AC098955) Rattus norvegicus clone CH230-192O9, *** SEQUENCI...    36   3.0    5
(DX446887) BE2003_B05_F IASMA L2 HindIII BAC library Vitis v...    34   3.1    2
(EH015983) USDA-FP_188529 Lysiphlebus testaceipes adult whol...    34   3.1    2
(FG204848) Aabr01572 Antheraea assama fifth instar larval br...    34   3.1    2
(AC175969) Strongylocentrotus purpuratus clone R3-17F20, WOR...    36   3.1    4
(AM442498) Vitis vinifera contig VV78X188692.4, whole genome...    40   3.1    3
(AC212437) Solanum lycopersicum chromosome 11 clone C11HBa01...    36   3.1    4
(CV845510) ID0AEE12BH12RM1 ID0AEE Acyrthosiphon pisum cDNA c...    36   3.2    2
(AC215399) Solanum lycopersicum chromosome 2 clone C02HBa015...    36   3.2    5
(DV742607) ID0AFF7CD02CM1 ID0AFF Acyrthosiphon pisum cDNA cl...    34   3.2    2
(FB571377) Sequence 244 from Patent EP1865317.                     30   3.2    6
(FB571321) Sequence 188 from Patent EP1865317.                     30   3.2    6
(AC192108) Gallus gallus chromosome 1 clone CH261-42D10, ***...    32   3.2    4
(FG222756) Aats00026 Antheraea assama fifth instar larval te...    34   3.3    2
(CN757485) ID0AAA1DC04FM1 ApMS Acyrthosiphon pisum cDNA clon...    36   3.3    2
(FI257283) CccaBb063-D24JF CccABb Cajanus cajan genomic clon...    36   3.3    2
(AQ855360) CpG1894B CpIOWAgDNA1 Cryptosporidium parvum genom...    34   3.4    2
(BA000021) Wigglesworthia glossinidia endosymbiont of Glossi...    34   3.4    8
(AC115599) Dictyostelium discoideum chromosome 2 map 4229098...    36   3.4    6
(AX345575) Sequence 646 from Patent WO0200928.                     34   3.4    4
(EU362918) Bacillus thuringiensis strain INTA-FR7-4 plasmid ...    38   3.5    2
(GF095848) 57839 Glycine max young leaves DNA Glycine max ST...    44   3.5    1
(AC122896) Mus musculus BAC clone RP23-69N8 from chromosome ...    44   3.5    1
(AC087889) Mus Musculus Strain C57BL6/J Chromosome 10 BAC, R...    44   3.5    1
(AC215694) MACACA MULATTA BAC clone CH250-167G6 from chromos...    44   3.5    1
(AC207218) MACACA MULATTA BAC clone CH250-522C9 from chromos...    44   3.5    1
(FM992688) Candida dubliniensis CD36 chromosome 1, complete ...    44   3.5    1
(AP010263) Solanum lycopersicum DNA, chromosome 8, clone: C0...    44   3.5    1
(AM463358) Vitis vinifera, whole genome shotgun sequence, co...    44   3.5    1
(AM425504) Vitis vinifera contig VV78X018951.8, whole genome...    44   3.5    1
(AC216591) Populus trichocarpa clone POP002-D23, complete se...    44   3.5    1
(AR545765) Sequence 896 from patent US 6747137.                    44   3.5    1
(EF017180) Chlamys farreri clone CFFD125 microsatellite sequ...    44   3.5    1
(AY845715) Litopenaeus vannamei isolate 21 D-loop, partial s...    44   3.5    1
(AC150386) Branchiostoma floridae clone CH302-103G16, comple...    44   3.5    1
(AB161974) Entamoeba histolytica EhREP gene for Rab escort p...    44   3.5    1
(AL449403) Human DNA sequence from clone RP11-569G13 on chro...    44   3.5    1
(AC157717) Xenopus (Silurana) tropicalis clone ISB1-26A23, W...    44   3.5    1
(AC122970) Rattus norvegicus clone CH230-281K21, *** SEQUENC...    44   3.5    1
(AC111366) Rattus norvegicus clone CH230-84H11, WORKING DRAF...    44   3.5    1
(AC168846) Strongylocentrotus purpuratus clone R3-13A6, WORK...    44   3.5    1
(AK140885) Mus musculus 16 days embryo head cDNA, RIKEN full...    44   3.5    1
(BH154022) ENTSN70TR Entamoeba histolytica Sheared DNA Entam...    44   3.5    1
(AZ667597) ENTIZ73TR Entamoeba histolytica Sheared DNA Entam...    44   3.5    1
(ER615093) 1093016347536 Global-Ocean-Sampling_GS-36-01-01-2...    44   3.5    1
(EJ240222) 1095328036430 Global-Ocean-Sampling_GS-27-01-01-1...    44   3.5    1
(EI072845) hgx0008cd06.b1 hgx Oryza minuta genomic clone hgx...    44   3.5    1
(EI049384) hhd0004cg08.b1 hhd Oryza coarctata genomic clone ...    44   3.5    1
(ED619885) GM_WBa0014G07.r GM_WBa Glycine max genomic clone ...    44   3.5    1
(DU920546) 340772 Tomato EcoRI BAC Library Solanum lycopersi...    44   3.5    1
(DU852559) 48108 Tomato HindIII BAC Library Solanum lycopers...    44   3.5    1
(DH077212) Oryzias latipes Fosmid clone:GOLWFno154_a11, reve...    44   3.5    1
(DY682373) TTEAE54THC Tetrahymena thermophila EST library, c...    44   3.5    1
(AM852857) Venerupis (Ruditapes) decussatus EST, 5' end sequ...    44   3.5    1
(CX578781) TTE00017076 Amplicon Express - Conjugative Form T...    44   3.5    1
(CX576645) TTE00017068 Amplicon Express - Conjugative Form T...    44   3.5    1
(CU621070) Theobroma cacao, mRNA sequence (KZ0AAA7YJ08FM1).        44   3.5    1
(CU611978) Theobroma cacao, mRNA sequence (KZ0ABK2YG01FM1).        44   3.5    1
(CU611900) Theobroma cacao, mRNA sequence (KZ0ABK2YB13FM1).        44   3.5    1
(CU611730) Theobroma cacao, mRNA sequence (KZ0ABK1YG01FM1).        44   3.5    1
(CU603440) Theobroma cacao, mRNA sequence (KZ0AAR1YH06).           44   3.5    1
(CU592971) Theobroma cacao, mRNA sequence (KZ0AAH1YC19).           44   3.5    1
(CU569179) Theobroma cacao, mRNA sequence (KZ0ACAD7YA13FM1).       44   3.5    1
(CU543579) Theobroma cacao, mRNA sequence (KZ0AAV3YL16FM1).        44   3.5    1
(CU536705) Theobroma cacao, mRNA sequence (KZ0AAQ4YD07FM1).        44   3.5    1
(CU529035) Theobroma cacao, mRNA sequence (KZ0ACAA8YM09FM1).       44   3.5    1
(CU528532) Theobroma cacao, mRNA sequence (KZ0ACAA6YM09FM1).       44   3.5    1
(CU527575) Theobroma cacao, mRNA sequence (KZ0ACAA2YO17FM1).       44   3.5    1
(CU526879) Theobroma cacao, mRNA sequence (KZ0ACAA10YB07FM1).      44   3.5    1
(CU524435) Theobroma cacao, mRNA sequence (KZ0ACB4YJ13FM1).        44   3.5    1
(CU523776) Theobroma cacao, mRNA sequence (KZ0ACB2YC08FM1).        44   3.5    1
(CU518661) Theobroma cacao, mRNA sequence (KZ0ABH2YF03FM1).        44   3.5    1
(CU492650) Theobroma cacao, mRNA sequence (KZ0ACAE8YK04FM1).       44   3.5    1
(CU482050) Theobroma cacao, mRNA sequence (KZ0AAT5YH01FM1).        44   3.5    1
(CU470122) Theobroma cacao, mRNA sequence (KZ0ACI3YA21FM1).        44   3.5    1
(AJ674300) Bos taurus EST, clone KN224-015_D01.                    44   3.5    1
(CA794458) Cac_BL_1561 Cac_BL (Bean and Leaf from Amelonardo...    44   3.5    1
(BY902789) Cryptomeria japonica cDNA clone: CMFL019_E10, 3'e...    44   3.5    1
(BY884562) Cryptomeria japonica cDNA clone: CMFL019_E10, 5'e...    44   3.5    1
(BB649149) Mus musculus 16 days embryo head cDNA, RIKEN full...    44   3.5    1
(GH465909) CCUA5860.b1 CCUA Peromyscus polionotus subgrisieu...    44   3.5    1
(FG170345) AGN_RNC002xn23f1.ab1 AGN_RNC Nicotiana tabacum cD...    44   3.5    1
(CP000235) Anaplasma phagocytophilum HZ, complete genome.          44   3.5    1
(BZ720445) PUCFM37TD ZM_0.6_1.0_KB Zea mays genomic clone ZM...    38   3.6    2
(AE014819) Plasmodium falciparum 3D7 chromosome 14 section 4...    30   3.6    8
(FD370990) CBPN47677.b1 CBPN: Subtracted channel catfish cDN...    34   3.6    2
(AY955840) Paracoccidioides brasiliensis strain Pb18 mitocho...    38   3.7    4
(CU695322) Brassica rapa subsp. pekinensis clone KBrH108F05,...    36   3.7    4
(AE014842) Plasmodium falciparum 3D7 chromosome 11 section 7...    34   3.7    8
(CN761710) ID0AAA3AC03FM1 ApMS Acyrthosiphon pisum cDNA clon...    36   3.7    2
(EJ231648) 1092402624628 Global-Ocean-Sampling_GS-27-01-01-1...    38   3.8    2
(DY226572) ID0AAI8YM07RM1 ID0AEE Acyrthosiphon pisum cDNA cl...    34   3.8    2
(BD460592) Diagnosis of Diseases Associated with Cell Cycle.       30   3.9    5
(BD452514) Diagnosis of Diseases Associated with Cell Cycle.       30   3.9    5
(AX252128) Sequence 389 from Patent WO0168911.                     30   3.9    5
(DY229171) ID0AAK6YE16CM1 ApHL3SD Acyrthosiphon pisum cDNA c...    34   3.9    2
(DV746098) ID0AAG4DB05CM1 ID0AAG Acyrthosiphon pisum cDNA cl...    34   3.9    2
(DV745348) ID0AAG2AD09CM1 ID0AAG Acyrthosiphon pisum cDNA cl...    34   3.9    2
(DY228489) ID0AAK4YD24CM1 ApHL3SD Acyrthosiphon pisum cDNA c...    34   3.9    2
(DV744362) ID0AAG13BF03CM1 ID0AAG Acyrthosiphon pisum cDNA c...    34   3.9    2
(AF083031) Guillardia theta nucleomorph chromosome 3, comple...    38   4.0    6
(DV746319) ID0AAG5CE02CM1 ID0AAG Acyrthosiphon pisum cDNA cl...    34   4.0    2
(DV744859) ID0AAG15BA04CM1 ID0AAG Acyrthosiphon pisum cDNA c...    34   4.0    2
(AM466490) Vitis vinifera contig VV78X256635.35, whole genom...    32   4.1    3
(EK305426) 1095462379394 Global-Ocean-Sampling_GS-31-01-01-1...    34   4.1    2
(AC202513) Medicago truncatula clone mth2-60a13, complete se...    38   4.1    5
(DV746039) ID0AAG4CD02CM1 ID0AAG Acyrthosiphon pisum cDNA cl...    34   4.1    2
(AC020704) Homo sapiens BAC clone RP11-315L6 from 15, comple...    34   4.2    7
(AC087804) Homo sapiens chromosome 15 clone RP11-315L6 map 1...    34   4.2    7
(DY226169) ID0AAI7YK24RM1 ID0AEE Acyrthosiphon pisum cDNA cl...    34   4.2    2
(CS468864) Sequence 55 from Patent EP1748080.                      34   4.2    8
(CS419341) Sequence 55 from Patent WO2006094836.                   34   4.2    8
(AC102647) Mus musculus chromosome 10, clone RP23-269A24, co...    40   4.3    4
(EK086702) 1092961158815 Global-Ocean-Sampling_GS-31-01-01-1...    34   4.3    2
(EK066111) 1092960126854 Global-Ocean-Sampling_GS-31-01-01-1...    34   4.3    2
(AC165976) Gallus gallus BAC clone CH261-89G17 from chromoso...    36   4.3    3
(AC174752) Bos taurus clone CH240-90G15, WORKING DRAFT SEQUE...    36   4.4    4
(AE017197) Rickettsia typhi str. Wilmington complete genome.       34   4.5    8
(BX119920) Zebrafish DNA sequence from clone CH211-46O21 in ...    36   4.5    5
(CP001205) Borrelia burgdorferi ZS7, complete genome.              32   4.5    8
(AC170139) Bos taurus clone CH240-215P2, WORKING DRAFT SEQUE...    42   4.5    4
(EK267786) 1095462240377 Global-Ocean-Sampling_GS-31-01-01-1...    36   4.6    2
(AB265368) Archiearis parthenias gene for 16S rRNA, partial ...    36   4.6    2
(FJ429372) Carica papaya clone 99O03, complete sequence.           36   4.6    4
(DU047957) 155322 Tomato HindIII BAC Library Solanum lycoper...    40   4.6    2
(AG389210) Mus musculus molossinus DNA, clone:MSMg01-205B14....    36   4.7    2
(AE014838) Plasmodium falciparum 3D7 chromosome 11 section 3...    34   4.8    7
(AL445563) Mycoplasma pulmonis (strain UAB CTIP) complete ge...    30   4.8    8
(AC141801) Apis mellifera clone CH224-61C20, WORKING DRAFT S...    40   4.8    3
(AC121598) Mus musculus BAC clone RP23-300F10 from chromosom...    38   4.9    3
(AC137832) Medicago truncatula chromosome 6 clone mth2-22i17...    38   5.0    5
(CU464008) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    34   5.0    5
(AL034559) Plasmodium falciparum MAL3P7.                           34   5.1    7
(CP000721) Clostridium beijerinckii NCIMB 8052, complete gen...    36   5.2    16
(AC006279) Plasmodium falciparum chromosome 12 clone PFYAC61...    30   5.2    9
(AL133224) Human chromosome 14 DNA sequence BAC R-16G17 of l...    34   5.3    6
(AC073984) Homo sapiens chromosome 3 clone RP11-394K18, WORK...    40   5.3    5
(AE014821) Plasmodium falciparum 3D7 chromosome 14 section 6...    34   5.3    6
(AC215483) Solanum lycopersicum chromosome 2 clone C02SLm006...    36   5.3    4
(AB035454) Staphylococcus aureus hlgA, orfX, spa genes, part...    36   5.4    3
(AE001437) Clostridium acetobutylicum ATCC 824, complete gen...    32   5.4    15
(CP000312) Clostridium perfringens SM101, complete genome.         36   5.5    13
(AB026643) Arabidopsis thaliana genomic DNA, chromosome 5, P...    34   5.5    4
(CR382325) Zebrafish DNA sequence from clone DKEY-186J8 in l...    40   5.5    3
(ED809654) ML__Ba0006F15r ML__Ba Mimulus lewisii genomic, ge...    32   5.6    3
(DQ471399) Euaresta festiva 16S ribosomal RNA gene, partial ...    40   5.8    2
(CP000084) Candidatus Pelagibacter ubique HTCC1062, complete...    32   5.9    11
(AC213417) Populus trichocarpa clone POP018-J23, complete se...    32   5.9    5
(AL929353) Plasmodium falciparum strain 3D7, chromosome 5, s...    34   6.1    8
(DQ356257) Homo sapiens isolate cftr10471_A cystic fibrosis ...    30   6.1    2
(DQ388139) Homo sapiens isolate cftr11376_B cystic fibrosis ...    30   6.1    2
(DQ388140) Homo sapiens isolate cftr11521_A cystic fibrosis ...    30   6.1    2
(DQ388133) Homo sapiens isolate cftr10976_B cystic fibrosis ...    30   6.1    2
(DQ354388) Homo sapiens isolate cftr14683_A cystic fibrosis ...    30   6.1    2
(DQ388142) Homo sapiens isolate cftr11589_A cystic fibrosis ...    30   6.1    2
(DQ356258) Homo sapiens isolate cftr10471_B cystic fibrosis ...    30   6.1    2
(DQ388143) Homo sapiens isolate cftr11589_B cystic fibrosis ...    30   6.1    2
(DQ388141) Homo sapiens isolate cftr11521_B cystic fibrosis ...    30   6.1    2
(DQ388130) Homo sapiens isolate cftr10543_A cystic fibrosis ...    30   6.1    2
(DQ356263) Homo sapiens isolate cftr14672_A cystic fibrosis ...    30   6.1    2
(DQ388129) Homo sapiens isolate cftr10540_B cystic fibrosis ...    30   6.1    2
(DQ388132) Homo sapiens isolate cftr10976_A cystic fibrosis ...    30   6.1    2
(DQ388128) Homo sapiens isolate cftr10540_A cystic fibrosis ...    30   6.1    2
(DQ356262) Homo sapiens isolate cftr14663_B cystic fibrosis ...    30   6.1    2
(DQ388138) Homo sapiens isolate cftr11376_A cystic fibrosis ...    30   6.1    2
(DQ356259) Homo sapiens isolate cftr10975_A cystic fibrosis ...    30   6.1    2
(DQ356261) Homo sapiens isolate cftr14663_A cystic fibrosis ...    30   6.1    2
(DQ356260) Homo sapiens isolate cftr10975_B cystic fibrosis ...    30   6.2    2
(DQ388136) Homo sapiens isolate cftr11373_A cystic fibrosis ...    30   6.2    2
(DQ388131) Homo sapiens isolate cftr10543_B cystic fibrosis ...    30   6.2    2
(DQ354391) Homo sapiens isolate cftr01814_B cystic fibrosis ...    30   6.2    2
(DQ354390) Homo sapiens isolate cftr01814_A cystic fibrosis ...    30   6.2    2
(DQ388134) Homo sapiens isolate cftr11321_A cystic fibrosis ...    30   6.2    2
(DQ354389) Homo sapiens isolate cftr14683_B cystic fibrosis ...    30   6.2    2
(DQ388135) Homo sapiens isolate cftr11321_B cystic fibrosis ...    30   6.2    2
(DQ356264) Homo sapiens isolate cftr14672_B cystic fibrosis ...    30   6.2    2
(DQ388144) Homo sapiens isolate cftr13838_A cystic fibrosis ...    30   6.2    2
(DQ388145) Homo sapiens isolate cftr13838_B cystic fibrosis ...    30   6.2    2
(DQ388137) Homo sapiens isolate cftr11373_B cystic fibrosis ...    30   6.2    2
(CU914734) H.numata DNA sequence from clone AEHN-41G24.            32   6.2    6
(EF188244) Onitis subopacus voucher Oni.sub.1 cytochrome b (...    34   6.3    2
(AC173507) Bos taurus clone CH240-216P15, WORKING DRAFT SEQU...    40   6.3    5
(AL844507) Plasmodium falciparum chromosome 8.                     34   6.4    11
(AC020839) Mus musculus clone CT7-66O9, WORKING DRAFT SEQUEN...    38   6.4    3
(EL601851) He_pwd_0198E08_M13R Heliconius erato pooled wing ...    30   6.4    3
(AC189589) Brassica rapa subsp. pekinensis clone KBrH012O06,...    34   6.4    3
(AC189381) Brassica rapa subsp. pekinensis clone KBrB051E13,...    34   6.4    4
(CR626875) Zebrafish DNA sequence from clone DKEY-31J4 in li...    32   6.5    2
(AC023352) Homo sapiens chromosome 17 clone RP11-767P9, WORK...    32   6.5    2
(AC212683) Pongo abelii chromosome UNKNOWN clone CH276-35D8,...    30   6.5    2
(CU928832) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    30   6.5    2
(AL591121) Human DNA sequence *** SEQUENCING IN PROGRESS ***...    30   6.5    2
(AC090167) Homo sapiens chromosome 17 clone RP11-767P9 map 1...    32   6.5    2
(CU929674) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    30   6.5    2
(CT025755) Mouse DNA sequence *** SEQUENCING CANCELLED *** f...    30   6.5    2
(AC172965) Bos taurus clone CH240-278A15, WORKING DRAFT SEQU...    32   6.5    4
(AC207529) Zea mays chromosome 10 clone CH201-547F14; ZMMBBc...    30   6.6    2
(AC004708) CIC5B11.1  check: 4870  from: 1  to: 167234, comp...    30   6.6    2
(AC104763) Homo sapiens chromosome 17, clone RP11-3K24, comp...    32   6.6    2
(AC197770) Zea mays chromosome 10 clone CH201-90K4; ZMMBBc00...    30   6.6    2
(AC201355) Strongylocentrotus purpuratus clone R3-17B10, WOR...    36   6.6    6
(AX349036) Sequence 494 from Patent WO0202807.                     34   6.6    4
(AC007568) Homo sapiens BAC clone CTB-180P8 from 7q31.2, com...    30   6.6    2
(AL691513) Mouse DNA sequence from clone RP23-451C8 on chrom...    30   6.7    2
(AY217738) Eimeria tenella apicoplast, complete genome.            32   6.7    4
(AC214998) Populus trichocarpa clone POP066-G22, complete se...    30   6.8    2
(AM465699) Vitis vinifera contig VV78X211867.8, whole genome...    34   6.8    3
(AC172865) Brassica rapa subsp. campestris clone KBrH001D17,...    38   7.0    4
(CP001078) Clostridium botulinum E3 str. Alaska E43, complet...    34   7.0    15
(AL391686) Human DNA sequence from clone CTB-BR164I22 on chr...    30   7.0    2
(CS741860) Sequence 9856 from Patent WO2005083127.                 40   7.0    4
(AE014828) Plasmodium falciparum 3D7 chromosome 14 section 1...    32   7.1    7
(CP001056) Clostridium botulinum B str. Eklund 17B, complete...    36   7.1    13
(CU639424) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    40   7.2    5
(AC153786) Homo sapiens chromosome 2 clone fa0650, complete ...    30   7.2    2
(AC145650) Homo sapiens chromosome UNK clone XXFOS-87876C1, ...    30   7.2    2
(EU626442) Gossypium raimondii clone BAC 031J10, complete se...    32   7.2    4
(BX248240) Zebrafish DNA sequence from clone CH211-162I19 in...    38   7.3    4
(AC202468) Medicago truncatula clone mth2-145h19, WORKING DR...    34   7.3    4
(AE013218) Buchnera aphidicola str. Sg (Schizaphis graminum)...    32   7.3    9
(AM481840) Vitis vinifera contig VV78X150383.5, whole genome...    30   7.5    2
(FJ416453) Palm lethal yellowing phytoplasma strain LYSS put...    32   7.5    2
(AB301595) Cerataphis bambusifoliae mitochondrial genes for ...    34   7.5    2
(AB301594) Cerataphis bambusifoliae mitochondrial genes for ...    34   7.5    2
(AB301593) Cerataphis bambusifoliae mitochondrial genes for ...    34   7.5    2
(AB301592) Cerataphis bambusifoliae mitochondrial genes for ...    34   7.5    2
(AC173822) Bos taurus clone CH240-88E9, WORKING DRAFT SEQUEN...    36   7.7    6
(AF275245) Trama rara 12S small subunit ribosomal RNA gene, ...    36   7.7    2
(AL049185) Plasmodium falciparum DNA *** SEQUENCING IN PROGR...    32   7.8    9
(AC120861) Mus musculus chromosome 5, clone RP23-60J23, comp...    32   7.8    8
(AM440162) Vitis vinifera, whole genome shotgun sequence, co...    32   7.8    3
(AC025949) Staphylococcus aureus clone sabac-114, complete s...    36   7.9    3
(CU695323) Brassica rapa subsp. pekinensis clone KBrH109L07,...    34   7.9    4
(AM448060) Vitis vinifera, whole genome shotgun sequence, co...    36   7.9    4
(AY748085) Heliconius metharme isolate RB-257 cytochrome oxi...    30   8.0    3
(AC025169) Homo sapiens chromosome 5 clone CTC-352M6, comple...    32   8.1    4
(AC116957) Dictyostelium discoideum chromosome 2 map 1685067...    32   8.1    10
(DU090696) 218831 Tomato HindIII BAC Library Solanum lycoper...    30   8.2    3
(AC166386) Bos taurus clone CH240-191K22, WORKING DRAFT SEQU...    36   8.4    5
(AC180508) Strongylocentrotus purpuratus clone R3-3099O12, W...    38   8.4    6
(DQ217399) Aspergillus tubingensis strain 0932 mitochondrion...    38   8.4    2
(CR854851) Zebrafish DNA sequence from clone DKEY-98D7 in li...    32   8.4    5
(AL139233) Human DNA sequence from clone RP1-44A19 on chromo...    32   8.5    5
(AF442957) Ostrinia nubilalis mitochondrion, complete genome.      32   8.5    4
(AF467260) Ostrinia furnacalis mitochondrion, complete genome.     32   8.5    4
(CR591180) full-length cDNA clone CS0DM004YG21 of Fetal live...    30   8.5    2
(J02775) Human restriction fragment length polymorphism 3' t...    30   8.8    2
(EF660026) Hopea wightiana trnT-trnL intergenic spacer, part...    32   8.8    2
(EY379505) CAXA17831.fwd CAXA Helobdella robusta Subtracted ...    30   8.8    2
(CT151150) Sus scrofa genomic clone PigE-148F1, genomic surv...    30   8.8    2
(CC428935) PUHPB29TB ZM_0.6_1.0_KB Zea mays genomic clone ZM...    30   8.8    2
(ET098272) QM0AAB12CD01FM1 CCER1 Citrus clementina genomic c...    30   8.8    2
(ET097935) QM0AAB12AD02FM1 CCER1 Citrus clementina genomic c...    30   8.8    2
(AM633395) Entamoeba dispar GSS, clone dispar101b07.q1k.           30   8.8    2
(EX630729) 255474801 Pea aphid whole body normalized full le...    32   8.8    2
(AL532002) human full-length cDNA 5-PRIME end of clone CS0DM...    30   8.9    2
(FF301846) 279349189 Pea aphid whole body normalized full le...    32   8.9    2
(DX130239) OG_ABa0160G23.r OG_ABa Oryza granulata genomic cl...    32   8.9    2
(EX252077) PY05054X1C09.f1 PY05 Carica papaya cDNA, mRNA seq...    32   8.9    2
(FF293809) 279295295 Pea aphid whole body normalized full le...    32   8.9    2
(BH967855) odg80a02.b1 B.oleracea002 Brassica oleracea genom...    32   8.9    2
(BH075566) RPCI-24-377D8.TV RPCI-24 Mus musculus genomic clo...    30   8.9    2
(EX610723) 255372150 Pea aphid whole body normalized full le...    32   8.9    2
(CU626707) Theobroma cacao, mRNA sequence (KZ0ABE11YL16FM1).       32   8.9    2
(CZ768620) OC__Ba0124P11.r OC__Ba Oryza coarctata genomic cl...    30   9.0    2
(EA682534) Sequence 61413 from patent US 7365185.                  34   9.0    4
(CZ542722) SRAA-aad45g08.g1 Strongyloides ratti whole genome...    30   9.0    3
(BH467497) BOHNY90TR BOHN Brassica oleracea genomic clone BO...    32   9.0    2
(CU627344) Theobroma cacao, mRNA sequence (KZ0ABE3YG10FM1).        32   9.1    2
(EY191847) RSAA-aaa20e01.g1 R.similis_EST_RSAA Radopholus si...    30   9.1    2
(CP000552) Prochlorococcus marinus str. MIT 9515, complete g...    32   9.2    13
(EY193581) RSAA-aaa96a02.g1 R.similis_EST_RSAA Radopholus si...    30   9.2    2
(EY192149) RSAA-aaa24h04.g1 R.similis_EST_RSAA Radopholus si...    30   9.3    2
(AC006151) Homo sapiens BAC clone GS1-286B23 from 7, complet...    36   9.5    3

>(AU036937) Dictyostelium discoideum slug cDNA, clone SSB841.
          Length = 303

 Score =  515 bits (260), Expect = e-142
 Identities = 260/260 (100%)
 Strand = Plus / Plus


Query: 59  gtacacgaaattgaattttcagataagaatgaaattccattaaaagatttaattttatat 118
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2   gtacacgaaattgaattttcagataagaatgaaattccattaaaagatttaattttatat 61


Query: 119 atgagagataacttactcaaagaaagatcagagttatttgtagttgatgatacagttcgt 178
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62  atgagagataacttactcaaagaaagatcagagttatttgtagttgatgatacagttcgt 121


Query: 179 ccaggtattttagttttaattaatgacgcagattgggaattatttggtggtatctcatac 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122 ccaggtattttagttttaattaatgacgcagattgggaattatttggtggtatctcatac 181


Query: 239 aatgtagaagataaagatacaatcattttcatttcaactttacatggaggttaaaaattt 298
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 182 aatgtagaagataaagatacaatcattttcatttcaactttacatggaggttaaaaattt 241


Query: 299 taattataaatacaaatatg 318
           ||||||||||||||||||||
Sbjct: 242 taattataaatacaaatatg 261

 Score = 81.8 bits (41), Expect = 2e-11
 Identities = 41/41 (100%)
 Strand = Plus / Plus


Query: 319 atttcaactttacatggaggttaaaaattttaattataaat 359
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 212 atttcaactttacatggaggttaaaaattttaattataaat 252

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 102105510
Number of Hits to DB: 610,804,354
Number of extensions: 43314141
Number of successful extensions: 4014112
Number of sequences better than 10.0: 527
Length of query: 359
Length of database: 101,790,757,118
Length adjustment: 23
Effective length of query: 336
Effective length of database: 99,442,330,388
Effective search space: 33412623010368
Effective search space used: 33412623010368
X1: 11 (21.8 bits)
S2: 21 (42.1 bits)

Query= Contig-U04628-1 (Contig-U04628-1Q) /CSM_Contig/Contig-U04628-1Q.Seq.d
         (359 letters)

Database: nrp_A
           3,268,448 sequences; 1,061,185,681 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54QN0) RecName: Full=Ubiquitin-related modifier 1 homolog;          192   2e-48
BT079124_1(BT079124|pid:none) Esox lucius clone eluc-evq-539-356...   113   2e-24
(Q9D2P4) RecName: Full=Ubiquitin-related modifier 1 homolog;  &A...   112   3e-24
AK049227_1(AK049227|pid:none) Mus musculus ES cells cDNA, RIKEN ...   112   4e-24
BT081676_1(BT081676|pid:none) Rana catesbeiana clone rcat-evr-50...   111   9e-24
BC169094_1(BC169094|pid:none) Rattus norvegicus ubiquitin relate...   111   9e-24
(Q9BTM9) RecName: Full=Ubiquitin-related modifier 1 homolog;  &A...   110   1e-23
(A9YUB5) RecName: Full=Ubiquitin-related modifier 1 homolog;  &(...   110   1e-23
(A0MDQ1) RecName: Full=Ubiquitin-related modifier 1 homolog 1;  ...   110   2e-23
DQ652667_1(DQ652667|pid:none) Arabidopsis thaliana clone 0000014...   110   2e-23
EF085681_1(EF085681|pid:none) Picea sitchensis clone WS02743_N19...   110   2e-23
(A8IC48) RecName: Full=Ubiquitin-related modifier 1 homolog;          107   1e-22
(Q0D6M1) RecName: Full=Ubiquitin-related modifier 1 homolog;    ...   105   4e-22
(B6SXH2) RecName: Full=Ubiquitin-related modifier 1 homolog;  &E...   104   1e-21
(Q7KU86) RecName: Full=Ubiquitin-related modifier 1 homolog;  &A...   101   7e-21
AP005448_12(AP005448|pid:none) Oryza sativa Japonica Group genom...   101   7e-21
BT082024_1(BT082024|pid:none) Drosophila melanogaster IP20063 fu...   101   7e-21
(B3NFA2) RecName: Full=Ubiquitin-related modifier 1 homolog;           99   4e-20
(Q1E493) RecName: Full=Ubiquitin-related modifier 1;                   99   5e-20
(B4LE67) RecName: Full=Ubiquitin-related modifier 1 homolog;           99   5e-20
(B4KYT0) RecName: Full=Ubiquitin-related modifier 1 homolog;           99   6e-20
(B2WIC3) RecName: Full=Ubiquitin-related modifier 1;                   98   1e-19
(B3M611) RecName: Full=Ubiquitin-related modifier 1 homolog;           97   1e-19
CU928170_526(CU928170|pid:none) Kluyveromyces thermotolerans str...    97   2e-19
CU928175_219(CU928175|pid:none) Zygosaccharomyces rouxii strain ...    97   2e-19
(B4GUT1) RecName: Full=Ubiquitin-related modifier 1 homolog;  &(...    97   2e-19
(Q2U9H6) RecName: Full=Ubiquitin-related modifier 1;  &AP007164_...    96   4e-19
AY915162_1(AY915162|pid:none) Schistosoma japonicum SJCHGC03168 ...    95   7e-19
(Q9P3U9) RecName: Full=Ubiquitin-related modifier 1;                   95   7e-19
(B0D4J6) RecName: Full=Ubiquitin-related modifier 1;                   95   9e-19
FN357354_57(FN357354|pid:none) Schistosoma mansoni genome sequen...    94   1e-18
(A6S5X1) RecName: Full=Ubiquitin-related modifier 1;                   93   3e-18
AL359685_4(AL359685|pid:none) S.pombe chromosome III cosmid c548...    93   3e-18
(Q16Y28) RecName: Full=Ubiquitin-related modifier 1 homolog;           91   1e-17
(A6ZVR0) RecName: Full=Ubiquitin-related modifier 1;  &(B3LTL7) ...    90   3e-17
(A7TQ77) RecName: Full=Ubiquitin-related modifier 1;                   89   4e-17
(Q75AD1) RecName: Full=Ubiquitin-related modifier 1;  &AE016817_...    88   8e-17
(Q6FWQ3) RecName: Full=Ubiquitin-related modifier 1;  &CR380949_...    86   4e-16
FN392320_414(FN392320|pid:none) Pichia pastoris GS115 chromosome...    86   5e-16
(Q6CQU4) RecName: Full=Ubiquitin-related modifier 1;  &CR382124_...    85   7e-16
AM494957_245(AM494957|pid:none) Leishmania braziliensis chromoso...    84   2e-15
AB170158_1(AB170158|pid:none) Macaca fascicularis brain cDNA clo...    82   8e-15
CR382134_662(CR382134|pid:none) Debaryomyces hansenii strain CBS...    81   1e-14
(Q6BVZ7) RecName: Full=Ubiquitin-related modifier 1;                   81   1e-14
AK300877_1(AK300877|pid:none) Homo sapiens cDNA FLJ58948 complet...    81   1e-14
AM502252_247(AM502252|pid:none) Leishmania infantum chromosome 34.     80   3e-14
CT005271_298(CT005271|pid:none) Leishmania major strain Friedlin...    79   4e-14
(Q9C245) RecName: Full=Ubiquitin-related modifier 1;                   75   1e-12
AL513445_1(AL513445|pid:none) Neurospora crassa DNA linkage grou...    75   1e-12
CU640366_1196(CU640366|pid:none) Podospora anserina genomic DNA ...    72   5e-12
AL359091_8(AL359091|pid:none) Human DNA sequence from clone RP11...    50   3e-05
(B3CKG1) RecName: Full=Ubiquitin-related modifier 1 homolog;           50   3e-05
BT030978_1(BT030978|pid:none) Drosophila melanogaster IP20163 fu...    41   0.012
AM920427_451(AM920427|pid:none) Penicillium chrysogenum Wisconsi...    38   0.021
AE009441_1480(AE009441|pid:none) Pyrobaculum aerophilum str. IM2...    39   0.044
(Q8SW42) RecName: Full=Ubiquitin-related modifier 1;                   37   0.17
CP000561_1004(CP000561|pid:none) Pyrobaculum calidifontis JCM 11...    37   0.29
CP000682_2222(CP000682|pid:none) Metallosphaera sedula DSM 5348,...    35   0.64
CP000660_2006(CP000660|pid:none) Pyrobaculum arsenaticum DSM 135...    35   1.1
CP000504_939(CP000504|pid:none) Pyrobaculum islandicum DSM 4184,...    34   1.4
AE005174_1827(AE005174|pid:none) Escherichia coli O157:H7 EDL933...    34   1.9
CP000561_1047(CP000561|pid:none) Pyrobaculum calidifontis JCM 11...    33   2.4
CP001399_1797(CP001399|pid:none) Sulfolobus islandicus L.S.2.15,...    33   4.2
CP000504_1791(CP000504|pid:none) Pyrobaculum islandicum DSM 4184...    33   4.2
AE006641_257(AE006641|pid:none) Sulfolobus solfataricus P2, comp...    32   5.4
CP000660_794(CP000660|pid:none) Pyrobaculum arsenaticum DSM 1351...    32   5.4
AM285311_78(AM285311|pid:none) Spiroplasma citri GII3-3X chromos...    32   5.4
CP000923_208(CP000923|pid:none) Thermoanaerobacter sp. X514, com...    32   7.1
CP000724_3018(CP000724|pid:none) Alkaliphilus metalliredigens QY...    32   9.3
CP001014_1306(CP001014|pid:none) Thermoproteus neutrophilus V24S...    32   9.3
DQ186541_1(DQ186541|pid:none) Escherichia coli strain ECL8394 po...    32   9.3

>(Q54QN0) RecName: Full=Ubiquitin-related modifier 1 homolog;
          Length = 96

 Score =  192 bits (489), Expect = 2e-48
 Identities = 96/96 (100%), Positives = 96/96 (100%)
 Frame = +2

Query: 2   MKVKIELSGGLELLFDKKKVHEIEFSDKNEIPLKDLILYMRDNLLKERSELFVVDDTVRP 181
           MKVKIELSGGLELLFDKKKVHEIEFSDKNEIPLKDLILYMRDNLLKERSELFVVDDTVRP
Sbjct: 1   MKVKIELSGGLELLFDKKKVHEIEFSDKNEIPLKDLILYMRDNLLKERSELFVVDDTVRP 60

Query: 182 GILVLINDADWELFGGISYNVEDKDTIIFISTLHGG 289
           GILVLINDADWELFGGISYNVEDKDTIIFISTLHGG
Sbjct: 61  GILVLINDADWELFGGISYNVEDKDTIIFISTLHGG 96

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3268448
Number of Hits to DB: 454,236,232
Number of extensions: 8099611
Number of successful extensions: 24362
Number of sequences better than 10.0: 71
Number of HSP's gapped: 24290
Number of HSP's successfully gapped: 72
Length of query: 119
Length of database: 1,061,185,681
Length adjustment: 85
Effective length of query: 34
Effective length of database: 783,367,601
Effective search space: 26634498434
Effective search space used: 26634498434
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 28 (15.4 bits)

 psg: 0.81  gvh: 0.25  alm: 0.40  top: 0.53  tms: 0.00  mit: 0.13  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 40.0 %: cytoplasmic
	  4.0 %: cytoskeletal
	  4.0 %: Golgi
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for Contig-U04628-1 is nuc