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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U04627-1
Contig ID Contig-U04627-1
Contig update 2001. 8.29
Contig sequence 
>Contig-U04627-1 (Contig-U04627-1Q) /CSM_Contig/Contig-U04627-1Q.Seq.d
GCATTCCATCAATTTTTTGAAGGTGTTGCACTTGGTTCTAGAATTTCAGA
TGCTAAATTAACATCACATTGGCATGAAGCTTTATTAACATCAATTTTGC
AGTTTCAGCACCAATTGGTATTGCAATTGGTGTAGGTGTTGCCTCTTCTT
TAAATGTTAATGGTCCAACCTATTTAATTGTTCAAGGTGTTTTTGATAGT
GTTTGTGCTGGTATTTTACTTTACATCGGTTTCTCTTTAATGATTAAAGA
TTTCCCTGAAGATATGGAAGAATTATGTAGAGGTAAAAAATATGAATACT
TTTTACGTGCTGGTTTATTTATAGGTCTCTGGGTTGGTGCTGCAATGATG
GCTTTCATTGGAAAATATTTGTAA
Gap no gap
Contig length 374
Chromosome number (1..6, M) 2
Chromosome length 8467578
Start point 806381
End point 806756
Strand (PLUS/MINUS) PLUS
Number of clones 1
Number of EST 1
Link to clone list U04627
List of clone(s) 

est1=SSB840E,1,375
Translated Amino Acid sequence 
ipsif*rcctwf*nfrc*initla*SFININFAVSAPIGIAIGVGVASSLNVNGPTYLIV
QGVFDSVCAGILLYIGFSLMIKDFPEDMEELCRGKKYEYFLRAGLFIGLWVGAAMMAFIG
KYL*
Translated Amino Acid sequence (All Frames) 
Frame A:
afhqffegvalgsrisdakltshwhealltsilqfqhqlvlqlv*vlpll*mlmvqpi*l
fkvflivfvlvfyftsvsl**lkislkiwknyvevknmntfyvlvyl*vsglvlq*wlsl
enic


Frame B:
hsinflkvlhlvlefqmln*hhigmkly*hqfcsfstnwycnwcrcclffkc*wsnlfnc
srcf**clcwyftlhrflfnd*rfp*rygrim*r*ki*ilftcwfiyrslgwccndgfhw
kifv


Frame C:
ipsif*rcctwf*nfrc*initla*SFININFAVSAPIGIAIGVGVASSLNVNGPTYLIV
QGVFDSVCAGILLYIGFSLMIKDFPEDMEELCRGKKYEYFLRAGLFIGLWVGAAMMAFIG
KYL*
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U04627-1 (Contig-U04627-1Q)
/CSM_Contig/Contig-U04627-1Q.Seq.d
         (374 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U04627-1 (Contig-U04627-1Q) /CSM_Contig/Conti...   741  0.0
Contig-U12459-1 (Contig-U12459-1Q) /CSM_Contig/Conti...    36  0.026
Contig-U14682-1 (Contig-U14682-1Q) /CSM_Contig/Conti...    34  0.10
Contig-U13958-1 (Contig-U13958-1Q) /CSM_Contig/Conti...    34  0.10
Contig-U11935-1 (Contig-U11935-1Q) /CSM_Contig/Conti...    34  0.10
Contig-U14283-1 (Contig-U14283-1Q) /CSM_Contig/Conti...    32  0.40
Contig-U13235-1 (Contig-U13235-1Q) /CSM_Contig/Conti...    32  0.40
Contig-U12780-1 (Contig-U12780-1Q) /CSM_Contig/Conti...    32  0.40
Contig-U12241-1 (Contig-U12241-1Q) /CSM_Contig/Conti...    32  0.40
Contig-U12013-1 (Contig-U12013-1Q) /CSM_Contig/Conti...    32  0.40

>Contig-U04627-1 (Contig-U04627-1Q) /CSM_Contig/Contig-U04627-1Q.Seq.d
          Length = 374

 Score =  741 bits (374), Expect = 0.0
 Identities = 374/374 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   gcattccatcaattttttgaaggtgttgcacttggttctagaatttcagatgctaaatta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   gcattccatcaattttttgaaggtgttgcacttggttctagaatttcagatgctaaatta 60

                                                                       
Query: 61  acatcacattggcatgaagctttattaacatcaattttgcagtttcagcaccaattggta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  acatcacattggcatgaagctttattaacatcaattttgcagtttcagcaccaattggta 120

                                                                       
Query: 121 ttgcaattggtgtaggtgttgcctcttctttaaatgttaatggtccaacctatttaattg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ttgcaattggtgtaggtgttgcctcttctttaaatgttaatggtccaacctatttaattg 180

                                                                       
Query: 181 ttcaaggtgtttttgatagtgtttgtgctggtattttactttacatcggtttctctttaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ttcaaggtgtttttgatagtgtttgtgctggtattttactttacatcggtttctctttaa 240

                                                                       
Query: 241 tgattaaagatttccctgaagatatggaagaattatgtagaggtaaaaaatatgaatact 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tgattaaagatttccctgaagatatggaagaattatgtagaggtaaaaaatatgaatact 300

                                                                       
Query: 301 ttttacgtgctggtttatttataggtctctgggttggtgctgcaatgatggctttcattg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ttttacgtgctggtttatttataggtctctgggttggtgctgcaatgatggctttcattg 360

                         
Query: 361 gaaaatatttgtaa 374
           ||||||||||||||
Sbjct: 361 gaaaatatttgtaa 374


>Contig-U12459-1 (Contig-U12459-1Q) /CSM_Contig/Contig-U12459-1Q.Seq.d
          Length = 1298

 Score = 36.2 bits (18), Expect = 0.026
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                 
Query: 120 attgcaattggtgtaggtgttg 141
           |||||||||||||| |||||||
Sbjct: 240 attgcaattggtgttggtgttg 219


>Contig-U14682-1 (Contig-U14682-1Q) /CSM_Contig/Contig-U14682-1Q.Seq.d
          Length = 2904

 Score = 34.2 bits (17), Expect = 0.10
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                             
Query: 116  tggtattgcaattggtg 132
            |||||||||||||||||
Sbjct: 2122 tggtattgcaattggtg 2138


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4323
Number of Sequences: 6905
Number of extensions: 4323
Number of successful extensions: 456
Number of sequences better than 10.0: 149
length of query: 374
length of database: 5,674,871
effective HSP length: 16
effective length of query: 358
effective length of database: 5,564,391
effective search space: 1992051978
effective search space used: 1992051978
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)
dna update 2009. 6.27
Homology vs DNA 
Query= Contig-U04627-1 (Contig-U04627-1Q) /CSM_Contig/Contig-U04627-1Q.Seq.d
         (374 letters)

Database: ddbj_A
           102,105,510 sequences; 101,790,757,118 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AC117072) Dictyostelium discoideum chromosome 2 map 3879572...   555   0.0    2
(AU036936) Dictyostelium discoideum slug cDNA, clone SSB840.      555   e-178  2
(AU071587) Dictyostelium discoideum slug cDNA, clone SSB840.      287   e-125  2
(AC116984) Dictyostelium discoideum chromosome 2 map 2567470...   266   e-104  3
(AC097607) Rattus norvegicus clone CH230-202L16, WORKING DRA...    50   0.022  2
(AC128162) Rattus norvegicus clone CH230-294H23, *** SEQUENC...    50   0.060  1
(AC117033) Rattus norvegicus clone CH230-259K17, WORKING DRA...    50   0.060  1
(AJ940246) Sus scrofa EST, clone C0007304l20, 3' direction.        42   0.22   2
(CD858730) CE.007O16F010727 CE Pisum sativum cDNA clone CE00...    48   0.24   1
(GO029439) LJMB010TO JCVI-LJ2 Lotus japonicus cDNA 3', mRNA ...    36   0.25   2
(DN114084) 1113419 MARC 4PIG Sus scrofa cDNA 3', mRNA sequence.    42   0.26   2
(DN107703) 1105170 MARC 4PIG Sus scrofa cDNA 5', mRNA sequence.    42   0.31   2
(DW166329) CLVY4819.b1_E06.ab1 CLV(XYZ) lettuce virosa Lactu...    46   0.93   1
(DW166215) CLVY4710.b1_L01.ab1 CLV(XYZ) lettuce virosa Lactu...    46   0.93   1
(DW137026) CLSY4530.b1_D06.ab1 CLS(XYZ) lettuce sativa Lactu...    46   0.93   1
(BQ874976) QGI6M20.yg.ab1 QG_ABCDI lettuce salinas Lactuca s...    46   0.93   1
(BQ853861) QGB21L02.yg.ab1 QG_ABCDI lettuce salinas Lactuca ...    46   0.93   1
(BQ846747) QGA20C04.yg.ab1 QG_ABCDI lettuce salinas Lactuca ...    46   0.93   1
(EV802541) Rp-64 cDNA library of tubeworm, Ridgeia piscesae ...    46   0.93   1
(AC222366) Bos taurus clone CH240-416F3, WORKING DRAFT SEQUE...    38   2.7    4
(DN113732) 1113035 MARC 4PIG Sus scrofa cDNA 5', mRNA sequence.    38   3.0    2
(CD535447) LeukoN5_4_D05.b1_A027 Unstimulated peripheral blo...    38   3.5    2
(BX649458) Zebrafish DNA sequence from clone DKEY-14P20 in l...    44   3.7    1
(FP102818) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   3.7    1
(CT399808) Sus scrofa genomic clone CH242-403K6, genomic sur...    44   3.7    1
(CT378351) Sus scrofa genomic clone CH242-293P19, genomic su...    44   3.7    1
(CE828236) tigr-gss-dog-17000331978208 Dog Library Canis lup...    44   3.7    1
(FG459326) 021009KAIA006448HT (KAIA) Actinidia chinensis rip...    44   3.7    1
(ER484144) 1093015286793 Global-Ocean-Sampling_GS-35-01-01-1...    40   4.5    2
(BC006655) Mus musculus membrane associated DNA binding prot...    36   5.1    3
(BC031826) Mus musculus membrane associated DNA binding prot...    36   5.2    3
(AC135125) Rattus norvegicus clone CH230-265D13, *** SEQUENC...    34   5.3    3
(CU302291) Zebrafish DNA sequence from clone CH211-174K6 in ...    32   7.1    2
(AM467746) Vitis vinifera contig VV78X225998.3, whole genome...    40   8.5    2
(EH734959) CNMM8033.b1_B18.ab1 CNM(LMS) spotted knapweed Cen...    30   9.2    2

>(AC117072) Dictyostelium discoideum chromosome 2 map 3879572-4071762
              strain AX4, complete sequence.
          Length = 192187

 Score =  555 bits (280), Expect(2) = 0.0
 Identities = 280/280 (100%)
 Strand = Plus / Plus


Query: 95     ttttgcagtttcagcaccaattggtattgcaattggtgtaggtgttgcctcttctttaaa 154
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118269 ttttgcagtttcagcaccaattggtattgcaattggtgtaggtgttgcctcttctttaaa 118328


Query: 155    tgttaatggtccaacctatttaattgttcaaggtgtttttgatagtgtttgtgctggtat 214
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118329 tgttaatggtccaacctatttaattgttcaaggtgtttttgatagtgtttgtgctggtat 118388


Query: 215    tttactttacatcggtttctctttaatgattaaagatttccctgaagatatggaagaatt 274
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118389 tttactttacatcggtttctctttaatgattaaagatttccctgaagatatggaagaatt 118448


Query: 275    atgtagaggtaaaaaatatgaatactttttacgtgctggtttatttataggtctctgggt 334
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118449 atgtagaggtaaaaaatatgaatactttttacgtgctggtttatttataggtctctgggt 118508


Query: 335    tggtgctgcaatgatggctttcattggaaaatatttgtaa 374
              ||||||||||||||||||||||||||||||||||||||||
Sbjct: 118509 tggtgctgcaatgatggctttcattggaaaatatttgtaa 118548

 Score =  194 bits (98), Expect(2) = 0.0
 Identities = 98/98 (100%)
 Strand = Plus / Plus


Query: 1      gcattccatcaattttttgaaggtgttgcacttggttctagaatttcagatgctaaatta 60
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118174 gcattccatcaattttttgaaggtgttgcacttggttctagaatttcagatgctaaatta 118233


Query: 61     acatcacattggcatgaagctttattaacatcaatttt 98
              ||||||||||||||||||||||||||||||||||||||
Sbjct: 118234 acatcacattggcatgaagctttattaacatcaatttt 118271

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 102105510
Number of Hits to DB: 518,907,343
Number of extensions: 30114860
Number of successful extensions: 2328515
Number of sequences better than 10.0: 35
Length of query: 374
Length of database: 101,790,757,118
Length adjustment: 23
Effective length of query: 351
Effective length of database: 99,442,330,388
Effective search space: 34904257966188
Effective search space used: 34904257966188
X1: 11 (21.8 bits)
S2: 21 (42.1 bits)
protein update 2009. 7.30
Homology vs Protein 
Query= Contig-U04627-1 (Contig-U04627-1Q) /CSM_Contig/Contig-U04627-1Q.Seq.d
         (374 letters)

Database: nrp_A
           3,268,448 sequences; 1,061,185,681 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC117072_46(AC117072|pid:none) Dictyostelium discoideum chromoso...   186   2e-60
AC116984_130(AC116984|pid:none) Dictyostelium discoideum chromos...   171   5e-56
AM502251_302(AM502251|pid:none) Leishmania infantum chromosome 33.     84   9e-21
AM502246_199(AM502246|pid:none) Leishmania infantum chromosome 28.     90   2e-20
AM494968_348(AM494968|pid:none) Leishmania braziliensis chromoso...    73   3e-16
AM494968_345(AM494968|pid:none) Leishmania braziliensis chromoso...    73   3e-16
AM502249_380(AM502249|pid:none) Leishmania infantum chromosome 31.     68   1e-14
AM502249_379(AM502249|pid:none) Leishmania infantum chromosome 31.     68   1e-14
BT051764_1(BT051764|pid:none) Medicago truncatula clone MTYF5_F6...    65   1e-12
EU956392_1(EU956392|pid:none) Zea mays clone 1561988 zinc transp...    62   2e-12
AM455308_1(AM455308|pid:none) Vitis vinifera contig VV78X269517....    62   3e-12
AM455308_2(AM455308|pid:none) Vitis vinifera contig VV78X269517....    62   3e-12
AB242563_1(AB242563|pid:none) Chengiopanax sciadophylloides CsZI...    60   3e-11
EU958153_1(EU958153|pid:none) Zea mays clone 1675523 ZIP zinc/ir...    62   7e-11
AM466959_1(AM466959|pid:none) Vitis vinifera contig VV78X079628....    59   7e-11
EU961673_1(EU961673|pid:none) Zea mays clone 237520 zinc transpo...    60   1e-10
AY805423_1(AY805423|pid:none) Fragaria x ananassa zinc transport...    59   1e-10
AY864924_1(AY864924|pid:none) Triticum aestivum zinc transporter...    60   2e-10
AB126090_1(AB126090|pid:none) Oryza sativa Japonica Group OsZIP7...    58   3e-10
AP007155_1119(AP007155|pid:none) Aspergillus oryzae RIB40 genomi...    61   3e-10
AM269971_36(AM269971|pid:none) Aspergillus niger contig An01c024...    60   3e-10
AM457428_2(AM457428|pid:none) Vitis vinifera contig VV78X129692....    59   3e-10
AM455752_3(AM455752|pid:none) Vitis vinifera contig VV78X246665....    54   3e-10
AY339056_1(AY339056|pid:none) Medicago truncatula metal transpor...    56   3e-10
AF275751_1(AF275751|pid:none) Thlaspi caerulescens ZIP-like zinc...    56   4e-10
AY456088_1(AY456088|pid:none) Thlaspi caerulescens Zn and Cd tra...    56   4e-10
AF133267_1(AF133267|pid:none) Thlaspi caerulescens Zn and Cd tra...    56   4e-10
AY456089_1(AY456089|pid:none) Thlaspi caerulescens Zn and Cd tra...    56   4e-10
AY275180_1(AY275180|pid:none) Oryza sativa (japonica cultivar-gr...    57   6e-10
FJ208991_1(FJ208991|pid:none) Hordeum vulgare cultivar Vanessa m...    58   6e-10
AE017347_192(AE017347|pid:none) Cryptococcus neoformans var. neo...    58   7e-10
DQ490134_1(DQ490134|pid:none) Triticum aestivum putative zinc tr...    56   7e-10
AB206397_1(AB206397|pid:none) Thlaspi japonicum TjZNT1 mRNA for ...    55   7e-10
DQ490131_1(DQ490131|pid:none) Triticum aestivum putative zinc tr...    57   1e-09
AF292029_1(AF292029|pid:none) Thlaspi caerulescens putative Zn t...    59   1e-09
AE016820_228(AE016820|pid:none) Ashbya gossypii (= Eremothecium ...    55   2e-09
AP007157_481(AP007157|pid:none) Aspergillus oryzae RIB40 genomic...    58   2e-09
AM448776_2(AM448776|pid:none) Vitis vinifera contig VV78X278502....    53   2e-09
AM270290_77(AM270290|pid:none) Aspergillus niger contig An12c034...    58   2e-09
AM920430_132(AM920430|pid:none) Penicillium chrysogenum Wisconsi...    57   2e-09
BT062162_1(BT062162|pid:none) Zea mays full-length cDNA clone ZM...    53   4e-09
FN392321_531(FN392321|pid:none) Pichia pastoris GS115 chromosome...    47   5e-09
(Q8LE59) RecName: Full=Fe(2+) transport protein 3, chloroplastic...    52   5e-09
AY085604_1(AY085604|pid:none) Arabidopsis thaliana clone 15980 m...    52   5e-09
(O23039) RecName: Full=Zinc transporter 5; AltName: Full=ZRT/IRT...    59   6e-09
AM920428_86(AM920428|pid:none) Penicillium chrysogenum Wisconsin...    55   6e-09
AC133572_20(AC133572|pid:none) Medicago truncatula clone mth2-10...    52   8e-09
DQ146930_1(DQ146930|pid:none) Gibberella moniliformis zinc trans...    56   8e-09
AM182059_1(AM182059|pid:none) Hordeum vulgare mRNA for zinc tran...    53   8e-09
AE017344_30(AE017344|pid:none) Cryptococcus neoformans var. neof...    53   8e-09
AY611772_1(AY611772|pid:none) Aspergillus fumigatus membrane zin...    55   8e-09
CU928170_382(CU928170|pid:none) Kluyveromyces thermotolerans str...    54   1e-08
AM920427_299(AM920427|pid:none) Penicillium chrysogenum Wisconsi...    55   1e-08
CR380959_186(CR380959|pid:none) Candida glabrata strain CBS138 c...    52   2e-08
AM920433_460(AM920433|pid:none) Penicillium chrysogenum Wisconsi...    49   2e-08
AM269954_34(AM269954|pid:none) Aspergillus niger contig An01c007...    55   2e-08
CR380951_49(CR380951|pid:none) Candida glabrata strain CBS138 ch...    52   3e-08
AE017347_193(AE017347|pid:none) Cryptococcus neoformans var. neo...    52   3e-08
CR382124_682(CR382124|pid:none) Kluyveromyces lactis strain NRRL...    52   4e-08
CU928165_322(CU928165|pid:none) Kluyveromyces thermotolerans str...    55   4e-08
AP007151_23(AP007151|pid:none) Aspergillus oryzae RIB40 genomic ...    54   4e-08
AB175740_1(AB175740|pid:none) Thlaspi japonicum TjZNT2 mRNA for ...    49   5e-08
CR382132_906(CR382132|pid:none) Yarrowia lipolytica strain CLIB1...    52   5e-08
CP000498_674(CP000498|pid:none) Pichia stipitis CBS 6054 chromos...    50   5e-08
FJ208992_1(FJ208992|pid:none) Hordeum vulgare cultivar Vanessa m...    51   5e-08
AY960753_1(AY960753|pid:none) Arabidopsis halleri subsp. gemmife...    55   5e-08
AP007151_814(AP007151|pid:none) Aspergillus oryzae RIB40 genomic...    48   6e-08
(Q12436) RecName: Full=Zinc-regulated transporter 2; AltName: Fu...    50   6e-08
CU928167_6(CU928167|pid:none) Kluyveromyces thermotolerans strai...    53   6e-08
AJ812001_1(AJ812001|pid:none) Aspergillus niger partial mRNA for...    58   9e-08
CR382134_317(CR382134|pid:none) Debaryomyces hansenii strain CBS...    50   1e-07
CR382137_1120(CR382137|pid:none) Debaryomyces hansenii chromosom...    51   1e-07
FN392322_539(FN392322|pid:none) Pichia pastoris GS115 chromosome...    50   1e-07
CU928178_82(CU928178|pid:none) Zygosaccharomyces rouxii strain C...    51   2e-07
DQ826734_1(DQ826734|pid:none) Paracoccidioides brasiliensis zinc...    45   2e-07
(Q9FIS2) RecName: Full=Probable zinc transporter 12; AltName: Fu...    49   2e-07
CP000498_498(CP000498|pid:none) Pichia stipitis CBS 6054 chromos...    51   2e-07
CU633895_144(CU633895|pid:none) Podospora anserina genomic DNA c...    48   4e-07
AY960756_1(AY960756|pid:none) Arabidopsis halleri subsp. gemmife...    47   6e-07
CU928176_759(CU928176|pid:none) Zygosaccharomyces rouxii strain ...    50   1e-06
CR382132_644(CR382132|pid:none) Yarrowia lipolytica strain CLIB1...    45   1e-06
CR382134_694(CR382134|pid:none) Debaryomyces hansenii strain CBS...    46   2e-06
AF065444_1(AF065444|pid:none) Pisum sativum root iron transporte...    48   5e-06
AM920437_1012(AM920437|pid:none) Penicillium chrysogenum Wiscons...    43   7e-06
CR382130_30(CR382130|pid:none) Yarrowia lipolytica strain CLIB12...    42   9e-06
AJ580313_1(AJ580313|pid:none) Arabidopsis halleri subsp. halleri...    40   1e-05
(Q8S3W4) RecName: Full=Probable zinc transporter 8; AltName: Ful...    44   2e-05
AB263746_1(AB263746|pid:none) Nicotiana tabacum IRT1 mRNA for ir...    45   4e-05
AC140035_3(AC140035|pid:none) Medicago truncatula clone mth2-25n...    45   4e-05
AY590764_1(AY590764|pid:none) Cucumis sativus iron regulated tra...    45   4e-05
AM454757_1(AM454757|pid:none) Vitis vinifera contig VV78X062613....    45   4e-05
AM293350_1(AM293350|pid:none) Thlaspi caerulescens irt1-G gene f...    43   4e-05
BT064213_1(BT064213|pid:none) Zea mays full-length cDNA clone ZM...    44   5e-05
AM293351_1(AM293351|pid:none) Thlaspi caerulescens irt1-P gene f...    42   5e-05
AF136579_1(AF136579|pid:none) Lycopersicon esculentum iron-regul...    44   7e-05
CU633438_156(CU633438|pid:none) Podospora anserina genomic DNA c...    49   7e-05
AM465944_1(AM465944|pid:none) Vitis vinifera contig VV78X268143....    43   9e-05
AK221833_1(AK221833|pid:none) Arabidopsis thaliana mRNA for puta...    42   9e-05
(Q8W246) RecName: Full=Zinc transporter 7; AltName: Full=ZRT/IRT...    42   9e-05
AY327039_1(AY327039|pid:none) Oryza sativa (japonica cultivar-gr...    42   2e-04
(Q38856) RecName: Full=Fe(2+) transport protein 1; AltName: Full...    40   2e-04
AM270382_35(AM270382|pid:none) Aspergillus niger contig An16c030...    38   2e-04
(Q8W245) RecName: Full=Probable zinc transporter 10; AltName: Fu...    41   4e-04
AJ580315_1(AJ580315|pid:none) Arabidopsis halleri subsp. halleri...    40   5e-04
(O64738) RecName: Full=Zinc transporter 6, chloroplastic; AltNam...    39   9e-04
CU633873_39(CU633873|pid:none) Podospora anserina genomic DNA ch...    33   0.001
AM479443_3(AM479443|pid:none) Vitis vinifera contig VV78X274805....    40   0.002
FJ648719_2(FJ648719|pid:none) Epichloe festucae putative subtili...    43   0.003
AC145388_15(AC145388|pid:none) Oryza sativa chromosome 3 BAC OSJ...    38   0.003
AP008209_2209(AP008209|pid:none) Oryza sativa (japonica cultivar...    38   0.003
BT045888_1(BT045888|pid:none) Salmo salar clone ssal-rgf-535-311...    37   0.009
(Q6QQT1) RecName: Full=Zinc transporter ZIP1; AltName: Full=Zrt-...    37   0.015
AF033536_1(AF033536|pid:none) Arabidopsis thaliana putative zinc...    38   0.13
BC096852_1(BC096852|pid:none) Danio rerio solute carrier family ...    33   0.15
DQ490133_1(DQ490133|pid:none) Triticum aestivum putative zinc tr...    37   0.22
(Q9LTH9) RecName: Full=Zinc transporter 2; AltName: Full=ZRT/IRT...    37   0.28
AE013599_200(AE013599|pid:none) Drosophila melanogaster chromoso...    37   0.28
AE013599_201(AE013599|pid:none) Drosophila melanogaster chromoso...    37   0.28
AK075257_1(AK075257|pid:none) Homo sapiens cDNA FLJ90776 fis, cl...    36   0.37
AJ243649_1(AJ243649|pid:none) Homo sapiens mRNA for putative met...    36   0.48
BC003152_1(BC003152|pid:none) Homo sapiens solute carrier family...    36   0.48
AK159290_1(AK159290|pid:none) Mus musculus osteoclast-like cell ...    36   0.48
AL358472_5(AL358472|pid:none) Human DNA sequence from clone RP11...    36   0.48
AK293389_1(AK293389|pid:none) Homo sapiens cDNA FLJ57100 complet...    36   0.48
DQ287972_1(DQ287972|pid:none) Danio rerio anion exchanger Ae2.1 ...    35   0.82
DQ286970_1(DQ286970|pid:none) Danio rerio clone 15-3 anion excha...    35   0.82
BC089142_1(BC089142|pid:none) Xenopus laevis hypothetical protei...    34   1.4
AJ401615_1(AJ401615|pid:none) Drosophila melanogaster mRNA for z...    33   2.4
AP003277_20(AP003277|pid:none) Oryza sativa Japonica Group genom...    30   2.5
AE014297_2261(AE014297|pid:none) Drosophila melanogaster chromos...    33   3.1
CP000875_2609(CP000875|pid:none) Herpetosiphon aurantiacus ATCC ...    33   3.1
AY070921_1(AY070921|pid:none) Drosophila melanogaster RE02747 fu...    33   3.1
CP000680_1894(CP000680|pid:none) Pseudomonas mendocina ymp, comp...    33   4.1
CP001323_532(CP001323|pid:none) Micromonas sp. RCC299 chromosome...    32   5.3
CR858768_1(CR858768|pid:none) Pongo abelii mRNA; cDNA DKFZp459I1...    32   6.9
L27213_1(L27213|pid:none) Homo sapiens anion exchange protein mR...    32   6.9
A42497(A42497;B42497)anion exchanger 3, cardiac splice form - rat      32   6.9
BC171760_1(BC171760|pid:none) Homo sapiens solute carrier family...    32   6.9
AB384869_1(AB384869|pid:none) Synthetic construct DNA, clone: pF...    32   6.9
AE017125_963(AE017125|pid:none) Helicobacter hepaticus ATCC 5144...    32   6.9
(P16283) RecName: Full=Anion exchange protein 3;          Short=...    32   6.9
AK299595_1(AK299595|pid:none) Homo sapiens cDNA FLJ52446 complet...    32   6.9
(P48751) RecName: Full=Anion exchange protein 3;          Short=...    32   6.9
AJ537572_1(AJ537572|pid:none) Raja erinacea mRNA for anion excha...    32   6.9
CR940352_734(CR940352|pid:none) Theileria annulata strain Ankara...    32   6.9
AK289974_1(AK289974|pid:none) Homo sapiens cDNA FLJ75597 complet...    32   6.9
AY142112_1(AY142112|pid:none) Homo sapiens anion exchanger SLC4A...    32   6.9
AC157503_1(AC157503|pid:none) Medicago truncatula chromosome 2 c...    32   9.1
CP000269_1853(CP000269|pid:none) Janthinobacterium sp. Marseille...    32   9.1

>AC117072_46(AC117072|pid:none) Dictyostelium discoideum chromosome
           2 map 3879572-4071762 strain AX4, complete sequence.
          Length = 389

 Score =  186 bits (473), Expect(2) = 2e-60
 Identities = 92/92 (100%), Positives = 92/92 (100%)
 Frame = +3

Query: 96  FAVSAPIGIAIGVGVASSLNVNGPTYLIVQGVFDSVCAGILLYIGFSLMIKDFPEDMEEL 275
           FAVSAPIGIAIGVGVASSLNVNGPTYLIVQGVFDSVCAGILLYIGFSLMIKDFPEDMEEL
Sbjct: 298 FAVSAPIGIAIGVGVASSLNVNGPTYLIVQGVFDSVCAGILLYIGFSLMIKDFPEDMEEL 357

Query: 276 CRGKKYEYFLRAGLFIGLWVGAAMMAFIGKYL 371
           CRGKKYEYFLRAGLFIGLWVGAAMMAFIGKYL
Sbjct: 358 CRGKKYEYFLRAGLFIGLWVGAAMMAFIGKYL 389

 Score = 68.6 bits (166), Expect(2) = 2e-60
 Identities = 32/32 (100%), Positives = 32/32 (100%)
 Frame = +1

Query: 1   AFHQFFEGVALGSRISDAKLTSHWHEALLTSI 96
           AFHQFFEGVALGSRISDAKLTSHWHEALLTSI
Sbjct: 266 AFHQFFEGVALGSRISDAKLTSHWHEALLTSI 297

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3268448
Number of Hits to DB: 545,373,030
Number of extensions: 11027033
Number of successful extensions: 25364
Number of sequences better than 10.0: 149
Number of HSP's gapped: 25223
Number of HSP's successfully gapped: 260
Length of query: 124
Length of database: 1,061,185,681
Length adjustment: 90
Effective length of query: 34
Effective length of database: 767,025,361
Effective search space: 26078862274
Effective search space used: 26078862274
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 29 (15.8 bits)
PSORT 

 psg: 0.93  gvh: 0.49  alm: 0.28  top: 0.40  tms: 0.20  mit: 0.21  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 1.00  m3b: 0.00  m_ : 0.00 

	 44.0 %: endoplasmic reticulum
	 16.0 %: mitochondrial
	  8.0 %: extracellular, including cell wall
	  8.0 %: plasma membrane
	  4.0 %: cytoplasmic
	  4.0 %: cytoskeletal
	  4.0 %: Golgi
	  4.0 %: nuclear
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for Contig-U04627-1 is end
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 1
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0