>Contig-U04624-1 (Contig-U04624-1Q) /CSM_Contig/Contig-U04624-1Q.Seq.d
AAAAATAAAAAAATGGACATTATTGAACAATTTAAAAATAAAGAAACTAT
TGATTTCATTAATATCATTGAGAGTTTAAAGTTATTAAATTTATCATTAA
GTTTATCAGAAAATTTAAAATGTCAAACTATTTGTAATGTACTAAAATTG
AAATTTTTAAAAGTTGGTTATAACTTTTTTTCATTGTTTGATACCTTCAA
GTTTAAAAGTAGAGAAACAAATTCATTAATTGCTGGTATGAAAGGAATTA
TTGAAGCTGTTGAAGAGGAATCAAATAGTTTAGAAAATGTTTTATTGAAT
AAAAATATTTCATTGGATTCAATTTCAAATAGTGTTAACCTTTTGATTTC
TTGTAGTAATGAAACCTTTGAAATTAATAAAGAATTTAATGAATCATTAG
TAAAAGCAATATCATTGATTAAAAATGAAAAAAGTTGTATCAAAAATCAA
ATTTTTAAAATTCAATTAGAGATAAATTCAATTGAGAAAGAAGAAAATAA
AAAATGTATAAAGTCTATACTTTATCCATTTTTTATTAGAGGCAACCAAT
TCTATTTAAGTCAATTA

est1=SSB826F,1,568

KNKKMDIIEQFKNKETIDFINIIESLKLLNLSLSLSENLKCQTICNVLKLKFLKVGYNFF
SLFDTFKFKSRETNSLIAGMKGIIEAVEEESNSLENVLLNKNISLDSISNSVNLLISCSN
ETFEINKEFNESLVKAISLIKNEKSCIKNQIFKIQLEINSIEKEENKKCIKSILYPFFIR
GNQFYLSQL

Frame A:
KNKKMDIIEQFKNKETIDFINIIESLKLLNLSLSLSENLKCQTICNVLKLKFLKVGYNFF
SLFDTFKFKSRETNSLIAGMKGIIEAVEEESNSLENVLLNKNISLDSISNSVNLLISCSN
ETFEINKEFNESLVKAISLIKNEKSCIKNQIFKIQLEINSIEKEENKKCIKSILYPFFIR
GNQFYLSQL


Frame B:
kikkwtllnnlkikkllislislrv*sy*iyh*vyqki*nvklfvmy*n*nf*klvitff
hclipsslkvekqih*llv*kellkllkrnqiv*kmfy*ikifhwiqfqivltf*flvvm
kplkliknlmnh**kqyh*lkmkkvvskikflkfn*r*iqlrkkkiknv*slyfihflle
atnsi*vn


Frame C:
k*knghy*ti*k*rny*fh*yh*efkvikfiikfirkfkmsnyl*ctkieifkswl*lff
iv*ylqv*k*rnkfincwyerny*sc*rgik*frkcfie*kyfigfnfk*c*pfdfl***
nl*n**ri**iisksniid*k*kklyqksnf*nsirdkfn*errk*kmykvytlsify*r
qpilfksi

Query= Contig-U04624-1 (Contig-U04624-1Q)
/CSM_Contig/Contig-U04624-1Q.Seq.d
         (567 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U04624-1 (Contig-U04624-1Q) /CSM_Contig/Conti...   761  0.0
Contig-U00515-1 (Contig-U00515-1Q) /CSM_Contig/Conti...    44  2e-04
Contig-U13830-1 (Contig-U13830-1Q) /CSM_Contig/Conti...    38  0.010
Contig-U08909-1 (Contig-U08909-1Q) /CSM_Contig/Conti...    38  0.010
Contig-U11515-1 (Contig-U11515-1Q) /CSM_Contig/Conti...    36  0.040
Contig-U11429-1 (Contig-U11429-1Q) /CSM_Contig/Conti...    36  0.040
Contig-U10406-1 (Contig-U10406-1Q) /CSM_Contig/Conti...    36  0.040
Contig-U05194-1 (Contig-U05194-1Q) /CSM_Contig/Conti...    36  0.040
Contig-U01283-1 (Contig-U01283-1Q) /CSM_Contig/Conti...    36  0.040
Contig-U09815-1 (Contig-U09815-1Q) /CSM_Contig/Conti...    30  2.4

>Contig-U04624-1 (Contig-U04624-1Q) /CSM_Contig/Contig-U04624-1Q.Seq.d
          Length = 567

 Score =  761 bits (384), Expect = 0.0
 Identities = 398/405 (98%)
 Strand = Plus / Plus

                                                                       
Query: 14  tggacattattgaacaatttaaaaataaagaaactattgatttcattaatatcattgaga 73
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14  tggacattattgaacaatttaaaaataaagaaactattgatttcattaatatcattgaga 73

                                                                       
Query: 74  gtttaaagttattaaatttatcattaagtttatcagaaaatttaaaatgtcaaactattt 133
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74  gtttaaagttattaaatttatcattaagtttatcagaaaatttaaaatgtcaaactattt 133

                                                                       
Query: 134 gtaatgtactaaaattgaaatttttaaaagttggttataacnnnnnnncattgtttgata 193
           |||||||||||||||||||||||||||||||||||||||||       ||||||||||||
Sbjct: 134 gtaatgtactaaaattgaaatttttaaaagttggttataactttttttcattgtttgata 193

                                                                       
Query: 194 ccttcaagtttaaaagtagagaaacaaattcattaattgctggtatgaaaggaattattg 253
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 194 ccttcaagtttaaaagtagagaaacaaattcattaattgctggtatgaaaggaattattg 253

                                                                       
Query: 254 aagctgttgaagaggaatcaaatagtttagaaaatgttttattgaataaaaatatttcat 313
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 aagctgttgaagaggaatcaaatagtttagaaaatgttttattgaataaaaatatttcat 313

                                                                       
Query: 314 tggattcaatttcaaatagtgttaaccttttgatttcttgtagtaatgaaacctttgaaa 373
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 tggattcaatttcaaatagtgttaaccttttgatttcttgtagtaatgaaacctttgaaa 373

                                                        
Query: 374 ttaataaagaatttaatgaatcattagtaaaagcaatatcattga 418
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 ttaataaagaatttaatgaatcattagtaaaagcaatatcattga 418


 Score =  210 bits (106), Expect = 1e-54
 Identities = 106/106 (100%)
 Strand = Plus / Plus

                                                                       
Query: 462 tcaattagagataaattcaattgagaaagaagaaaataaaaaatgtataaagtctatact 521
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 tcaattagagataaattcaattgagaaagaagaaaataaaaaatgtataaagtctatact 521

                                                         
Query: 522 ttatccattttttattagaggcaaccaattctatttaagtcaatta 567
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 ttatccattttttattagaggcaaccaattctatttaagtcaatta 567


 Score = 52.0 bits (26), Expect = 7e-07
 Identities = 38/42 (90%)
 Strand = Plus / Minus

                                                     
Query: 496 aataaaaaatgtataaagtctatactttatccattttttatt 537
           ||||||||||| ||||||| || ||||||| |||||||||||
Sbjct: 537 aataaaaaatggataaagtatagactttatacattttttatt 496


>Contig-U00515-1 (Contig-U00515-1Q) /CSM_Contig/Contig-U00515-1Q.Seq.d
          Length = 1339

 Score = 44.1 bits (22), Expect = 2e-04
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 487 aaagaagaaaataaaaaatgtataaa 512
           |||||||||||||||||||| |||||
Sbjct: 109 aaagaagaaaataaaaaatgaataaa 134


 Score = 28.2 bits (14), Expect = 9.6
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                         
Query: 296 tgaataaaaatatt 309
           ||||||||||||||
Sbjct: 127 tgaataaaaatatt 140


>Contig-U13830-1 (Contig-U13830-1Q) /CSM_Contig/Contig-U13830-1Q.Seq.d
          Length = 1760

 Score = 38.2 bits (19), Expect = 0.010
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 378 taaagaatttaatgaatca 396
           |||||||||||||||||||
Sbjct: 786 taaagaatttaatgaatca 804


 Score = 32.2 bits (16), Expect = 0.62
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                           
Query: 31  tttaaaaataaagaaa 46
           ||||||||||||||||
Sbjct: 147 tttaaaaataaagaaa 132


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 18,101
Number of Sequences: 6905
Number of extensions: 18101
Number of successful extensions: 1989
Number of sequences better than 10.0: 656
length of query: 567
length of database: 5,674,871
effective HSP length: 16
effective length of query: 551
effective length of database: 5,564,391
effective search space: 3065979441
effective search space used: 3065979441
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)

Query= Contig-U04624-1 (Contig-U04624-1Q) /CSM_Contig/Contig-U04624-1Q.Seq.d
         (567 letters)

Database: ddbj_A
           102,105,510 sequences; 101,790,757,118 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU071579) Dictyostelium discoideum slug cDNA, clone SSB826.      319   e-112  2
(CP000263) Buchnera aphidicola str. Cc (Cinara cedri), compl...    34   5e-05  12
(EJ621862) 1092963083151 Global-Ocean-Sampling_GS-29-01-01-1...    56   0.002  1
(BX293980) Mycoplasma mycoides subsp. mycoides SC str. PG1, ...    42   0.005  17
(AP009180) Candidatus Carsonella ruddii PV DNA, complete gen...    38   0.011  10
(FB571381) Sequence 248 from Patent EP1865317.                     36   0.011  6
(FB571325) Sequence 192 from Patent EP1865317.                     36   0.011  6
(BH201540) Sm1-53L22.TF Sm1 Schistosoma mansoni genomic clon...    42   0.031  2
(CU469464) Candidatus Phytoplasma mali strain AT complete ch...    36   0.064  12
(CU930036) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    38   0.089  7
(DX527426) GH_MBb0006B04f GH_MBb Gossypium hirsutum genomic ...    50   0.093  1
(FH396808) CHO_OF4806xh04r1.ab1 CHO_OF4 Nicotiana tabacum ge...    40   0.13   2
(FH582534) CHO_OF4898xe02f1.ab1 CHO_OF4 Nicotiana tabacum ge...    40   0.16   2
(BX255955) Zebrafish DNA sequence from clone CH211-249G22 in...    36   0.17   8
(ET675030) CHO_OF467xg19r1.ab1 CHO_OF Nicotiana tabacum geno...    40   0.18   2
(EK094195) 1092962024693 Global-Ocean-Sampling_GS-31-01-01-1...    40   0.20   2
(AC006085) Arabidopsis thaliana chromosome I BAC F11M15 geno...    36   0.21   6
(L22894) Apis florea mitochondrial ribosomal RNA large subun...    36   0.28   2
(AC177381) Strongylocentrotus purpuratus clone R3-52O20, WOR...    34   0.29   8
(DQ396875) Scenedesmus obliquus strain UTEX 393 chloroplast,...    36   0.36   6
(CP000361) Arcobacter butzleri RM4018, complete genome.            32   0.36   17
(AC093730) Homo sapiens BAC clone RP11-12K22 from 4, complet...    40   0.37   4
(CR548612) Paramecium tetraurelia macronuclear largest chrom...    48   0.37   1
(CL747176) OR_BBa0112C20.f OR_BBa Oryza nivara genomic clone...    48   0.37   1
(AE014852) Plasmodium falciparum 3D7 chromosome 12, section ...    32   0.39   9
(AC133121) Rattus norvegicus clone CH230-11P19, *** SEQUENCI...    42   0.43   6
(BX548174) Prochlorococcus marinus MED4 complete genome.           36   0.44   18
(CP000882) Hemiselmis andersenii chromosome 2, complete sequ...    36   0.59   8
(EA626131) Sequence 5010 from patent US 7365185.                   34   0.63   3
(AM482141) Vitis vinifera contig VV78X123830.19, whole genom...    38   0.65   3
(AX344573) Sequence 24 from Patent WO0200932.                      32   0.67   8
(CP000123) Mycoplasma capricolum subsp. capricolum ATCC 2734...    32   0.68   16
(CP000013) Borrelia garinii PBi, complete genome.                  34   0.68   15
(EJ734738) 1092961086191 Global-Ocean-Sampling_GS-30-02-01-1...    40   0.73   2
(AC012301) Homo sapiens chromosome 18, clone RP11-383D22, co...    34   0.77   2
(BA000026) Mycoplasma penetrans HF-2 DNA, complete genome.         32   0.77   18
(AC187470) Gossypium hirsutum chromosome UNKNOWN clone ZMMBB...    42   0.77   6
(AC178159) Strongylocentrotus purpuratus clone R3-3081G23, W...    36   0.77   2
(AC008006) Homo sapiens chromosome 18, clone RP11-233K20, co...    34   0.78   2
(AC181285) Strongylocentrotus purpuratus clone R3-4017A03, W...    36   0.79   2
(EK344482) 1095467249735 Global-Ocean-Sampling_GS-31-01-01-1...    42   0.83   2
(AL929352) Plasmodium falciparum strain 3D7, chromosome 5, s...    34   0.85   7
(AR584244) Sequence 1 from patent US 6797466.                      34   0.88   16
(AR271569) Sequence 1 from patent US 6503729.                      34   0.88   16
(EU139071) Solanum lycopersicum chromosome 9 clone C09HBa010...    42   0.90   3
(DU888201) 389790 Tomato HindIII BAC Library Solanum lycoper...    34   0.93   3
(AX458482) Sequence 28 from Patent WO0246454.                      30   0.98   7
(EB732229) AGENCOURT_77726898 NICHD_XGC_skin_m Xenopus laevi...    32   1.0    2
(ER464321) 1092963913054 Global-Ocean-Sampling_GS-35-01-01-1...    32   1.0    2
(ER285397) 1092343564551 Global-Ocean-Sampling_GS-34-01-01-1...    32   1.0    2
(CU855693) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    40   1.0    4
(DU867199) 84460 Tomato HindIII BAC Library Solanum lycopers...    34   1.0    3
(AC013737) Homo sapiens chromosome 10 clone RP11-313B15, com...    34   1.1    7
(Z27080) Caenorhabditis elegans Cosmid F55H2.                      44   1.1    2
(CU179680) Mycoplasma agalactiae PG2 chromosome, complete se...    38   1.2    12
(CU550725) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    36   1.2    6
(DT956288) CFW144-E09.x1d-t SHGC-CFW Gasterosteus aculeatus ...    36   1.2    2
(CP000084) Candidatus Pelagibacter ubique HTCC1062, complete...    34   1.2    15
(AE017308) Mycoplasma mobile 163K complete genome.                 36   1.4    13
(CU469499) Zebrafish DNA sequence from clone CH73-347H1 in l...    38   1.4    6
(AL049180) Plasmodium falciparum DNA *** SEQUENCING IN PROGR...    36   1.4    5
(CU695043) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    42   1.4    7
(DQ473518) Arabidopsis thaliana ARR2 (ARR2) gene, complete cds.    46   1.4    1
(AB016472) Arabidopsis thaliana gene for ARR2 protein, compl...    46   1.4    1
(AC226496) Homo sapiens BAC clone RP11-796B8 from chromosome...    46   1.4    1
(AC093720) Homo sapiens BAC clone CTD-2005D20 from 4, comple...    46   1.4    1
(AC027157) Homo sapiens chromosome 11, clone RP11-64I17, com...    46   1.4    1
(AC022796) Homo sapiens chromosome 11, clone RP11-277K23, co...    46   1.4    1
(AC160948) Bos taurus clone CH240-77L24, WORKING DRAFT SEQUE...    46   1.4    1
(AC105813) Rattus norvegicus clone CH230-264I22, *** SEQUENC...    46   1.4    1
(AC105527) Rattus norvegicus clone CH230-207N3, *** SEQUENCI...    46   1.4    1
(AC231282) Homo sapiens chromosome 4 clone RP11-583O22, WORK...    46   1.4    1
(AC230663) Bos taurus clone CH240-502M3, WORKING DRAFT SEQUE...    46   1.4    1
(AC226449) Homo sapiens chromosome 4 clone RP11-684N16, WORK...    46   1.4    1
(AC201534) Strongylocentrotus purpuratus clone R3-3093I06, W...    46   1.4    1
(AC178645) Strongylocentrotus purpuratus clone R3-11G01, WOR...    46   1.4    1
(AC168806) Strongylocentrotus purpuratus clone R3-13H13, WOR...    46   1.4    1
(AC163950) Pongo abelii clone CH253-332L9, WORKING DRAFT SEQ...    46   1.4    1
(BH156287) ENTRM65TR Entamoeba histolytica Sheared DNA Entam...    46   1.4    1
(BZ426987) BONOW27TF BO_1.6_2_KB_tot Brassica oleracea genom...    46   1.4    1
(BX890914) Arabidopsis thaliana T-DNA flanking sequence GK-2...    46   1.4    1
(DY912211) CHAX7508.b1_G06.ab1 CHA(XYZ) common wild sunflowe...    46   1.4    1
(DV084502) 327-384-12_K22_KS Nematostella vectensis normaliz...    46   1.4    1
(DN788710) 90856175 Sea Urchin primary mesenchyme cell cDNA ...    46   1.4    1
(DN080632) JGI_CABD12570.rev NIH_XGC_tropLun1 Xenopus (Silur...    46   1.4    1
(CK553087) rswla0_012551.y1 swl Bombyx mori cDNA, mRNA seque...    46   1.4    1
(GE363073) 292287599 Nasonia vitripennis Male Pupae Nasonia ...    46   1.4    1
(GE357013) 292271748 Nasonia vitripennis Male Pupae Nasonia ...    46   1.4    1
(FC317795) CAIC6395.rev CAIC Nematostella vectensis Nemve wh...    46   1.4    1
(FC313440) CAIC3905.fwd CAIC Nematostella vectensis Nemve wh...    46   1.4    1
(CP000939) Clostridium botulinum B1 str. Okra, complete genome.    46   1.4    1
(CP000728) Clostridium botulinum F str. Langeland, complete ...    46   1.4    1
(AM488980) Vitis vinifera contig VV78X048826.7, whole genome...    38   1.5    4
(AC164168) Mus musculus 6 BAC RP23-343D21 (Roswell Park Canc...    34   1.6    6
(DQ630521) Stigeoclonium helveticum strain UTEX 441 chloropl...    40   1.6    8
(AE017243) Mycoplasma hyopneumoniae J, complete genome.            34   1.7    14
(AC178446) Strongylocentrotus purpuratus clone R3-3049B15, W...    40   1.8    2
(AC108424) Mus musculus chromosome 7, clone RP23-105A10, com...    38   1.8    4
(AC140395) Mus musculus BAC clone RP24-183G4 from chromosome...    42   1.8    6
(AL929359) Plasmodium falciparum strain 3D7, chromosome 9; s...    34   1.8    8
(AC006279) Plasmodium falciparum chromosome 12 clone PFYAC61...    40   1.8    6
(AJ235270) Rickettsia prowazekii strain Madrid E, complete g...    34   1.9    8
(AL698440) Homo sapiens mRNA; EST DKFZp686K06108_r1  (from c...    36   2.1    2
(AE017244) Mycoplasma hyopneumoniae 7448, complete genome.         32   2.1    14
(BH763379) BMBAC336G12T7_PSU Brugia malayi Genomic Bac Libra...    42   2.1    2
(AL035476) Plasmodium falciparum MAL4P3.                           36   2.1    9
(DQ150069) Pieris brassicae voucher PBR1 16S ribosomal RNA g...    40   2.2    2
(AB259764) Dictyostelium discoideum macA gene for cell fusio...    34   2.3    3
(CP000246) Clostridium perfringens ATCC 13124, complete genome.    36   2.4    16
(BS000056) Pan troglodytes chromosome 22 clone:RP43-138K13, ...    36   2.5    6
(CR376791) Mouse DNA sequence *** SEQUENCING IN PROGRESS ***...    36   2.6    3
(ER502599) 1093015408478 Global-Ocean-Sampling_GS-35-01-01-1...    40   2.6    2
(FH511560) CHO_OF4705xm06f1.ab1 CHO_OF4 Nicotiana tabacum ge...    32   2.6    3
(CR385075) Zebrafish DNA sequence from clone DKEY-281M4 in l...    36   2.7    4
(AC116825) Mus musculus chromosome 8, clone RP24-367H14, com...    32   2.8    2
(AL591428) Human DNA sequence from clone RP11-160A10 on chro...    32   2.9    2
(ER616926) 1093017280529 Global-Ocean-Sampling_GS-36-01-01-2...    38   2.9    2
(CP001184) Ureaplasma urealyticum serovar 10 str. ATCC 33699...    36   3.0    12
(CU694858) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    38   3.2    7
(CT027601) Zebrafish DNA sequence from clone DKEYP-31A2 in l...    40   3.4    2
(AC154023) Mus musculus 6 BAC RP24-345N6 (Roswell Park Cance...    36   3.4    5
(EJ815729) 1093017514588 Global-Ocean-Sampling_GS-30-02-01-1...    32   3.6    3
(EJ916023) 1093018560696 Global-Ocean-Sampling_GS-30-02-01-1...    32   3.6    3
(CU928230) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    42   3.7    5
(BU503252) AGENCOURT_8933598 NIH_MGC_94 Mus musculus cDNA cl...    32   3.8    2
(EJ419493) 1093012220949 Global-Ocean-Sampling_GS-28-01-01-1...    34   3.8    2
(EJ151085) 1092343762505 Global-Ocean-Sampling_GS-27-01-01-1...    32   3.8    2
(AC209270) Populus trichocarpa clone POP015-B22, complete se...    38   4.0    4
(AC102412) Mus musculus clone RP24-377A1, WORKING DRAFT SEQU...    36   4.0    6
(CT827875) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    38   4.1    3
(AC128865) Rattus norvegicus clone CH230-424C4, WORKING DRAF...    42   4.1    4
(AC116920) Dictyostelium discoideum chromosome 2 map 4415041...    32   4.1    7
(AB013393) Arabidopsis thaliana genomic DNA, chromosome 5, P...    32   4.2    5
(CU571086) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    40   4.3    2
(AC234566) Homo sapiens chromosome 10 clone ABC13-48823200B5...    42   4.3    3
(AC210370) Solanum lycopersicum chromosome 7 clone C07SLm004...    36   4.5    5
(AX348960) Sequence 418 from Patent WO0202807.                     40   4.5    3
(AX344209) Sequence 56 from Patent WO0200926.                      40   4.5    3
(AC129052) Rattus norvegicus clone CH230-123E11, WORKING DRA...    32   4.5    7
(CU469431) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    38   4.6    4
(AC117567) Mus musculus chromosome 16, clone RP24-380O24, co...    40   4.6    5
(EU237485) Igernella notabilis mitochondrion, complete genome.     40   4.8    3
(AC116957) Dictyostelium discoideum chromosome 2 map 1685067...    32   5.0    10
(AL162651) Arabidopsis thaliana DNA chromosome 3, BAC clone ...    34   5.2    4
(AC108902) Felis catus clone RP86-579L16, WORKING DRAFT SEQU...    42   5.2    2
(AX348654) Sequence 112 from Patent WO0202807.                     40   5.3    2
(AX345653) Sequence 724 from Patent WO0200928.                     40   5.3    2
(AX344263) Sequence 110 from Patent WO0200926.                     40   5.3    2
(DW268526) UI-S-GN1-abz-d-09-0-UI.s1 UI-S-GN1 Euprymna scolo...    30   5.4    3
(AF007261) Reclinomonas americana mitochondrion, complete ge...    36   5.4    4
(AC233779) Solanum lycopersicum chromosome 2 clone C02SLm007...    32   5.5    7
(AC147458) Felis catus clone RP86-99M14, WORKING DRAFT SEQUE...    34   5.7    5
(BX510950) Zebrafish DNA sequence from clone DKEY-103D23 in ...    44   5.7    1
(AC115843) Mus musculus chromosome 9, clone RP24-239P6, comp...    44   5.7    1
(AC210845) Pongo abelii BAC clone CH276-72J16 from chromosom...    44   5.7    1
(AC204343) Rhesus Macaque  BAC CH250-478F9 () complete seque...    44   5.7    1
(AC196871) Rhesus Macaque  BAC CH250-145L9 () complete seque...    44   5.7    1
(AC142094) Medicago truncatula clone mth2-34h6, complete seq...    44   5.7    1
(BC020980) Homo sapiens GTP binding protein 2, mRNA (cDNA cl...    44   5.7    1
(AC087439) Homo sapiens chromosome 8, clone GS1-251I9, compl...    44   5.7    1
(AC016598) Homo sapiens chromosome 5 clone CTD-2050E21, comp...    44   5.7    1
(AC008645) Homo sapiens chromosome 5 clone CTB-181L5, comple...    44   5.7    1
(AC161715) Sorex araneus clone SA_Ba-19F13, WORKING DRAFT SE...    44   5.7    1
(AC160885) Sorex araneus clone SA_Ba-398M16, WORKING DRAFT S...    44   5.7    1
(AC115252) Rattus norvegicus clone CH230-249M2, WORKING DRAF...    44   5.7    1
(AC107647) Mus musculus clone RP23-124C11, LOW-PASS SEQUENCE...    44   5.7    1
(CU856397) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   5.7    1
(CU655823) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   5.7    1
(CR848702) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    44   5.7    1
(AC220655) Bos taurus clone CH240-351B3, WORKING DRAFT SEQUE...    44   5.7    1
(AC216955) Solanum tuberosum chromosome 6 clone RHPOTKEY174L...    44   5.7    1
(AC214724) Pteropus vampyrus clone CH279-406M14, WORKING DRA...    44   5.7    1
(AC211898) Pongo abelii chromosome UNKNOWN clone CH276-386F1...    44   5.7    1
(AC164779) Bos taurus clone CH240-155I18, *** SEQUENCING IN ...    44   5.7    1
(ER476640) 1093015241144 Global-Ocean-Sampling_GS-35-01-01-1...    44   5.7    1
(EK307155) 1095462384524 Global-Ocean-Sampling_GS-31-01-01-1...    44   5.7    1
(EJ775944) 1093000600923 Global-Ocean-Sampling_GS-30-02-01-1...    44   5.7    1
(EJ738979) 1092962001307 Global-Ocean-Sampling_GS-30-02-01-1...    44   5.7    1
(EJ685913) 1092955177233 Global-Ocean-Sampling_GS-30-02-01-1...    44   5.7    1
(EJ684831) 1092955166289 Global-Ocean-Sampling_GS-30-02-01-1...    44   5.7    1
(EJ281932) 1095366060203 Global-Ocean-Sampling_GS-27-01-01-1...    44   5.7    1
(DU025317) 5689 Tomato HindIII BAC Library Solanum lycopersi...    44   5.7    1
(CR320618) mte1-46F24FM1 BAC end, cultivar Jemalong A17 of M...    44   5.7    1
(CL328080) RPCI44_248C19.f RPCI-44 Sus scrofa genomic clone ...    44   5.7    1
(EL926214) NY4ThAmp1_1_C08.b1_A039 NY4 theronts: amplified l...    44   5.7    1
(DT362234) JGI_CACC1112.rev CACC Pimephales promelas liver 7...    44   5.7    1
(DT361311) JGI_CACC599.rev CACC Pimephales promelas liver 7-...    44   5.7    1
(BU631602) UI-H-FL0-bdo-m-16-0-UI.s1 NCI_CGAP_FL0 Homo sapie...    44   5.7    1
(AI361712) qz18g07.x1 NCI_CGAP_CLL1 Homo sapiens cDNA clone ...    44   5.7    1
(BP591245) Arabidopsis thaliana cDNA clone:RAFL15-13-P09, 3'...    44   5.7    1
(BJ060322) Xenopus laevis cDNA clone:XL065g24, 5' end, singl...    44   5.7    1
(BJ038521) Xenopus laevis cDNA clone:XL043l06, 5' end, singl...    44   5.7    1
(FG409647) 020904KAAA009111HT (KAAA) A. deliciosa developing...    44   5.7    1
(FG409100) 020903KAAA008528HT (KAAA) A. deliciosa developing...    44   5.7    1
(CU407009) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    38   5.8    4
(AC196326) Echinops telfairi clone CH238-278F8, WORKING DRAF...    34   5.9    4
(AC160898) Loxodonta africana clone VMRC15-38N3, WORKING DRA...    42   6.0    4
(AC108860) Homo sapiens chromosome 8, clone RP11-22C11, comp...    36   6.0    5
(AC154614) Mus musculus BAC clone RP23-255I2 from chromosome...    30   6.1    7
(AC159835) Bos taurus clone CH240-78B22, WORKING DRAFT SEQUE...    32   6.3    6
(CR490333) mth2-161C14FM1 BAC end, cultivar Jemalong A17 of ...    40   6.5    2
(EK178467) 1095458110037 Global-Ocean-Sampling_GS-31-01-01-1...    32   6.8    3
(AF466306) Dictyostelium discoideum ABC transporter AbcB3 (a...    40   6.8    2
(AE014845) Plasmodium falciparum 3D7 chromosome 12, section ...    36   6.8    9
(AC115594) Dictyostelium discoideum chromosome 2 map 4071862...    34   7.0    4
(U29612) Caenorhabditis elegans cosmid C09B8, complete seque...    38   7.1    2
(CZ818753) OC__Ba0196E10.f OC__Ba Oryza coarctata genomic cl...    30   7.1    3
(AC231208) Tupaia belangeri clone CH275-475F22, WORKING DRAF...    42   7.3    3
(CR354560) Zebrafish DNA sequence from clone DKEY-109I12 in ...    36   7.3    4
(AC120877) Mus musculus chromosome 6, clone RP24-548D19, com...    34   7.4    5
(AC117075) Dictyostelium discoideum chromosome 2 map 5201047...    34   7.5    9
(AL356254) Human DNA sequence from clone RP11-502J9 on chrom...    32   7.5    6
(DH802339) Rattus norvegicus DNA, BAC clone: RNB1-398F02, 5'...    30   7.9    3
(CR955012) Medicago truncatula chromosome 5 clone mth2-84f14...    40   8.0    3
(CV160750) AGRIOTES4POLYT_B06_1_046 Agriotes lineatus cDNA A...    40   8.0    2
(AC161594) Mus musculus BAC clone RP24-153G11 from chromosom...    34   8.0    9
(AE014832) Plasmodium falciparum 3D7 chromosome 10 section 4...    32   8.2    9
(EC823859) SME00003437 esmbsro2 Sawyeria marylandensis cDNA,...    38   8.4    2
(AP000852) Homo sapiens genomic DNA, chromosome 11q, clone:R...    36   8.5    5
(AC116984) Dictyostelium discoideum chromosome 2 map 2567470...    34   8.6    13
(CL315058) mth2-133D15_T7 Medicago truncatula BAC end sequen...    40   8.7    2
(ED388335) AUAC-aan28h11.b1 Ascaris suum whole genome shotgu...    40   8.7    2
(AE014837) Plasmodium falciparum 3D7 chromosome 11 section 2...    36   8.9    7
(AM441555) Vitis vinifera contig VV78X013325.6, whole genome...    38   9.0    2
(AF063866) Melanoplus sanguinipes entomopoxvirus, complete g...    34   9.1    10
(EU200448) Pleurotus ostreatus plasmid RNA polymerase gene, ...    28   9.1    4
(AC114258) Dictyostelium discoideum chromosome 2 map complem...    32   9.3    5
(EJ873704) 1093018358486 Global-Ocean-Sampling_GS-30-02-01-1...    38   9.3    2
(AC137080) Medicago truncatula chromosome 6 clone mth2-9a7, ...    34   9.3    3
(BX005047) Zebrafish DNA sequence from clone DKEY-38N1 in li...    38   9.4    4
(EK152002) 1095456056773 Global-Ocean-Sampling_GS-31-01-01-1...    40   9.4    2
(EJ280224) 1095366050849 Global-Ocean-Sampling_GS-27-01-01-1...    34   9.4    3
(EJ662938) 1092955030577 Global-Ocean-Sampling_GS-30-02-01-1...    38   9.4    2
(BZ397573) EINBC47TF EI_10_12_KB Entamoeba invadens genomic ...    34   9.6    2
(EJ123909) 1092343385079 Global-Ocean-Sampling_GS-27-01-01-1...    34   9.6    2
(EK393992) 1095469511879 Global-Ocean-Sampling_GS-31-01-01-1...    34   9.6    2
(EJ133512) 1092343581209 Global-Ocean-Sampling_GS-27-01-01-1...    30   9.8    3
(AL662950) Oryza sativa genomic DNA, chromosome 4, BAC clone...    40   9.8    3
(DU978509) AUAC-aaa09b08.g1 Ascaris suum whole genome shotgu...    36   9.9    2

>(AU071579) Dictyostelium discoideum slug cDNA, clone SSB826.
          Length = 240

 Score =  319 bits (161), Expect(2) = e-112
 Identities = 161/161 (100%)
 Strand = Plus / Plus


Query: 14  tggacattattgaacaatttaaaaataaagaaactattgatttcattaatatcattgaga 73
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14  tggacattattgaacaatttaaaaataaagaaactattgatttcattaatatcattgaga 73


Query: 74  gtttaaagttattaaatttatcattaagtttatcagaaaatttaaaatgtcaaactattt 133
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74  gtttaaagttattaaatttatcattaagtttatcagaaaatttaaaatgtcaaactattt 133


Query: 134 gtaatgtactaaaattgaaatttttaaaagttggttataac 174
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 134 gtaatgtactaaaattgaaatttttaaaagttggttataac 174

 Score =  117 bits (59), Expect(2) = e-112
 Identities = 59/59 (100%)
 Strand = Plus / Plus


Query: 182 cattgtttgataccttcaagtttaaaagtagagaaacaaattcattaattgctggtatg 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 182 cattgtttgataccttcaagtttaaaagtagagaaacaaattcattaattgctggtatg 240

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 102105510
Number of Hits to DB: 761,911,721
Number of extensions: 55374756
Number of successful extensions: 5270665
Number of sequences better than 10.0: 241
Length of query: 567
Length of database: 101,790,757,118
Length adjustment: 23
Effective length of query: 544
Effective length of database: 99,442,330,388
Effective search space: 54096627731072
Effective search space used: 54096627731072
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)

Query= Contig-U04624-1 (Contig-U04624-1Q) /CSM_Contig/Contig-U04624-1Q.Seq.d
         (567 letters)

Database: nrp_A
           3,268,448 sequences; 1,061,185,681 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116986_26(AC116986|pid:none) Dictyostelium discoideum chromoso...    32   9.2
AY552545_77(AY552545|pid:none) Uncultured marine gamma proteobac...    32   9.2

>AC116986_26(AC116986|pid:none) Dictyostelium discoideum chromosome 2
            map 2234041-2567370 strain AX4, complete sequence.
          Length = 1118

 Score = 32.3 bits (72), Expect = 9.2
 Identities = 18/39 (46%), Positives = 25/39 (64%), Gaps = 6/39 (15%)
 Frame = +1

Query: 304  NISLDSISNSVNLLISCSNETFEIN------KEFNESLV 402
            N  L+SI++S+N LIS  NE   IN      KEFNE+++
Sbjct: 945  NAKLNSINSSINSLISKINEKLMINTPVEKIKEFNENII 983

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3268448
Number of Hits to DB: 576,008,381
Number of extensions: 7770170
Number of successful extensions: 19554
Number of sequences better than 10.0: 2
Number of HSP's gapped: 19547
Number of HSP's successfully gapped: 2
Length of query: 189
Length of database: 1,061,185,681
Length adjustment: 121
Effective length of query: 68
Effective length of database: 665,703,473
Effective search space: 45267836164
Effective search space used: 45267836164
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 30 (16.2 bits)

 psg: 0.48  gvh: 0.53  alm: 0.40  top: 0.53  tms: 0.00  mit: 0.17  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 36.0 %: nuclear
	 12.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for Contig-U04624-1 is cyt