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Dicty_cDB
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U04621-1
Contig ID Contig-U04621-1
Contig update 2001. 8.29
Contig sequence 
>Contig-U04621-1 (Contig-U04621-1Q) /CSM_Contig/Contig-U04621-1Q.Seq.d
CACACATACAATAAATTTTTTAGTTTTGGAATAATATAAAAAAGAAAAAA
AAAAAAACAAACATATAATATAATAATAAAATAATATAGAAAACTTCCAT
AAAAATAATAAATTAAAACTTTGATTAATAAAAAAAAAAAAAAAAATGCA
AGTAGATAGAGATTTAGATAAAGTTGGTGTTCATTGTGCCATAAAAGATT
GTAATTTATTAGATTTTTTACCATTTATATGCCAAGGTTGTCAAGGTCAA
TTTTGTTTAGAACATAAAGAAGAAAAAGAACATAAATGTCCGACTCCAAT
TGTAAAGATTGGTGGAACCACAGTTACATGTGATAAATGTGAGAGTATAT
TACCAGTACCAGTAAATTGTTTTGAAAAGGATATATTATCAATGCACCTA
AGAAAAGGTTGCCCTAAAAAGACAACAGTAAATCAACATAAATGTTCATT
TTGTCCAAAGATGGAATCAATTAAAATAGTTTGCCCAAATTGTAATTCAT
TTTGTCCAAAGATGGAATCAATTAAAATAGTTTGCCCAAATTGTAAAAAT
AATTTTTGTATAAAACATAGATTTGAACGTGACCATAAATGTAAACCTAG
AGTTAATCCTCCCCTTCAACAAACTATTTCACCACATTTACAAAATTTAT
TATCTCAACTTAGAAATTCAAAACCTGTCAAGACAGATGGTTAAATATAA
ATAATAATAATAATAATAATAATGATATGATCAATCCTTATGAATTCATA
TAAAAACTGTACAAATAAATTCTCAT
Gap no gap
Contig length 776
Chromosome number (1..6, M) 1
Chromosome length 4919822
Start point 4709008
End point 4709582
Strand (PLUS/MINUS) PLUS
Number of clones 3
Number of EST 3
Link to clone list U04621
List of clone(s) 

est1=SSB818E,1,777
est2=SSM371F,13,597
est3=SSG437Z,219,737
Translated Amino Acid sequence 
thtinflvle*ykkekkknkhii***nnienfhknnklkl*LIKKKKKMQVDRDLDKVGV
HCAIKDCNLLDFLPFICQGCQGQFCLEHKEEKEHKCPTPIVKIGGTTVTCDKCESILPVP
VNCFEKDILSMHLRKGCPKKTTVNQHKCSFCPKMESIKIVCPNCNSFCPKMESIKIVCPN
CKNNFCIKHRFERDHKCKPRVNPPLQQTISPHLQNLLSQLRNSKPVKTDG*i*iiiiiii
mi*silmnsyknctnkfs
Translated Amino Acid sequence (All Frames) 
Frame A:
htynkffsfgii*krkkkkqtyniiik*yrklp*k**iktlinkkkkknasr*rfr*swc
slchkrl*firfftiymprlsrsilfrt*rrkrt*msdsnckdwwnhsym**m*eyitst
sklf*kgyiinapkkrlp*kdnskst*mfilskdgin*nslpkl*filskdgin*nslpk
l*k*flykt*i*t*p*m*t*s*sspstnyfttftkfiist*kfktcqdrwlninnnnnnn
ndminpyefi*klyk*il


Frame B:
thtinflvle*ykkekkknkhii***nnienfhknnklkl*LIKKKKKMQVDRDLDKVGV
HCAIKDCNLLDFLPFICQGCQGQFCLEHKEEKEHKCPTPIVKIGGTTVTCDKCESILPVP
VNCFEKDILSMHLRKGCPKKTTVNQHKCSFCPKMESIKIVCPNCNSFCPKMESIKIVCPN
CKNNFCIKHRFERDHKCKPRVNPPLQQTISPHLQNLLSQLRNSKPVKTDG*i*iiiiiii
mi*silmnsyknctnkfs


Frame C:
hiq*if*fwnnikkkkkktni*ynnkii*ktsikiin*nfd**kkkkkck*iei*iklvf
ivp*kiviy*ifyhlyakvvkvnfv*nikkkkninvrlql*rlvepqlhvinvrvyyqyq
*ivlkriyyqct*ekvalkrqq*ininvhfvqrwnqlk*faqivihfvqrwnqlk*faqi
vkiifv*nidlnvtinvnlelilpfnklfhhiykiyylnleiqnlsrqmvkyk*******
*ydqsl*ihiktvqinsh
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U04621-1 (Contig-U04621-1Q)
/CSM_Contig/Contig-U04621-1Q.Seq.d
         (776 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U04621-1 (Contig-U04621-1Q) /CSM_Contig/Conti...  1080  0.0
Contig-U13543-1 (Contig-U13543-1Q) /CSM_Contig/Conti...    36  0.054
Contig-U11802-1 (Contig-U11802-1Q) /CSM_Contig/Conti...    36  0.054
Contig-U10881-1 (Contig-U10881-1Q) /CSM_Contig/Conti...    36  0.054
Contig-U08656-1 (Contig-U08656-1Q) /CSM_Contig/Conti...    36  0.054
Contig-U13720-1 (Contig-U13720-1Q) /CSM_Contig/Conti...    34  0.22
Contig-U13201-1 (Contig-U13201-1Q) /CSM_Contig/Conti...    34  0.22
Contig-U12300-1 (Contig-U12300-1Q) /CSM_Contig/Conti...    34  0.22
Contig-U12223-1 (Contig-U12223-1Q) /CSM_Contig/Conti...    34  0.22
Contig-U12060-1 (Contig-U12060-1Q) /CSM_Contig/Conti...    34  0.22

>Contig-U04621-1 (Contig-U04621-1Q) /CSM_Contig/Contig-U04621-1Q.Seq.d
          Length = 776

 Score = 1080 bits (545), Expect = 0.0
 Identities = 545/545 (100%)
 Strand = Plus / Plus

                                                                       
Query: 147 tgcaagtagatagagatttagataaagttggtgttcattgtgccataaaagattgtaatt 206
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 147 tgcaagtagatagagatttagataaagttggtgttcattgtgccataaaagattgtaatt 206

                                                                       
Query: 207 tattagattttttaccatttatatgccaaggttgtcaaggtcaattttgtttagaacata 266
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 tattagattttttaccatttatatgccaaggttgtcaaggtcaattttgtttagaacata 266

                                                                       
Query: 267 aagaagaaaaagaacataaatgtccgactccaattgtaaagattggtggaaccacagtta 326
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 aagaagaaaaagaacataaatgtccgactccaattgtaaagattggtggaaccacagtta 326

                                                                       
Query: 327 catgtgataaatgtgagagtatattaccagtaccagtaaattgttttgaaaaggatatat 386
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 catgtgataaatgtgagagtatattaccagtaccagtaaattgttttgaaaaggatatat 386

                                                                       
Query: 387 tatcaatgcacctaagaaaaggttgccctaaaaagacaacagtaaatcaacataaatgtt 446
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 tatcaatgcacctaagaaaaggttgccctaaaaagacaacagtaaatcaacataaatgtt 446

                                                                       
Query: 447 cattttgtccaaagatggaatcaattaaaatagtttgcccaaattgtaattcattttgtc 506
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 cattttgtccaaagatggaatcaattaaaatagtttgcccaaattgtaattcattttgtc 506

                                                                       
Query: 507 caaagatggaatcaattaaaatagtttgcccaaattgtaaaaataatttttgtataaaac 566
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 caaagatggaatcaattaaaatagtttgcccaaattgtaaaaataatttttgtataaaac 566

                                                                       
Query: 567 atagatttgaacgtgaccataaatgtaaacctagagttaatcctccccttcaacaaacta 626
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 atagatttgaacgtgaccataaatgtaaacctagagttaatcctccccttcaacaaacta 626

                                                                       
Query: 627 tttcaccacatttacaaaatttattatctcaacttagaaattcaaaacctgtcaagacag 686
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 tttcaccacatttacaaaatttattatctcaacttagaaattcaaaacctgtcaagacag 686

                
Query: 687 atggt 691
           |||||
Sbjct: 687 atggt 691


 Score =  105 bits (53), Expect = 7e-23
 Identities = 53/53 (100%)
 Strand = Plus / Plus

                                                                
Query: 724 gatatgatcaatccttatgaattcatataaaaactgtacaaataaattctcat 776
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 724 gatatgatcaatccttatgaattcatataaaaactgtacaaataaattctcat 776


 Score = 73.8 bits (37), Expect = 3e-13
 Identities = 37/37 (100%)
 Strand = Plus / Plus

                                               
Query: 1  cacacatacaataaattttttagttttggaataatat 37
          |||||||||||||||||||||||||||||||||||||
Sbjct: 1  cacacatacaataaattttttagttttggaataatat 37


>Contig-U13543-1 (Contig-U13543-1Q) /CSM_Contig/Contig-U13543-1Q.Seq.d
          Length = 600

 Score = 36.2 bits (18), Expect = 0.054
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                 
Query: 259 agaacataaagaagaaaaagaa 280
           |||| |||||||||||||||||
Sbjct: 376 agaaaataaagaagaaaaagaa 397


 Score = 32.2 bits (16), Expect = 0.85
 Identities = 19/20 (95%)
 Strand = Plus / Plus

                               
Query: 267 aagaagaaaaagaacataaa 286
           |||||||||||||| |||||
Sbjct: 366 aagaagaaaaagaaaataaa 385


 Score = 30.2 bits (15), Expect = 3.4
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                          
Query: 266 aaagaagaaaaagaa 280
           |||||||||||||||
Sbjct: 353 aaagaagaaaaagaa 367


>Contig-U11802-1 (Contig-U11802-1Q) /CSM_Contig/Contig-U11802-1Q.Seq.d
          Length = 1967

 Score = 36.2 bits (18), Expect = 0.054
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                 
Query: 261 aacataaagaagaaaaagaaca 282
           |||| |||||||||||||||||
Sbjct: 276 aacaaaaagaagaaaaagaaca 297


 Score = 36.2 bits (18), Expect = 0.054
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                 
Query: 261 aacataaagaagaaaaagaaca 282
           |||| |||||||||||||||||
Sbjct: 342 aacaaaaagaagaaaaagaaca 363


 Score = 30.2 bits (15), Expect = 3.4
 Identities = 18/19 (94%)
 Strand = Plus / Plus

                              
Query: 261 aacataaagaagaaaaaga 279
           |||| ||||||||||||||
Sbjct: 408 aacaaaaagaagaaaaaga 426


 Score = 30.2 bits (15), Expect = 3.4
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                          
Query: 266 aaagaagaaaaagaa 280
           |||||||||||||||
Sbjct: 434 aaagaagaaaaagaa 448


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 10,834
Number of Sequences: 6905
Number of extensions: 10834
Number of successful extensions: 1244
Number of sequences better than 10.0: 130
length of query: 776
length of database: 5,674,871
effective HSP length: 16
effective length of query: 760
effective length of database: 5,564,391
effective search space: 4228937160
effective search space used: 4228937160
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2009. 6.27
Homology vs DNA 
Query= Contig-U04621-1 (Contig-U04621-1Q) /CSM_Contig/Contig-U04621-1Q.Seq.d
         (776 letters)

Database: ddbj_A
           102,105,510 sequences; 101,790,757,118 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(C94124) Dictyostelium discoideum slug cDNA, clone SSG437.        549   e-175  2
(AU036920) Dictyostelium discoideum slug cDNA, clone SSB818.      389   e-151  3
(AU071573) Dictyostelium discoideum slug cDNA, clone SSB818.      188   3e-58  2
(AR546101) Sequence 1232 from patent US 6747137.                   52   0.008  2
(AM429452) Vitis vinifera contig VV79X000098.2, whole genome...    38   0.12   3
(AU074890) Dictyostelium discoideum slug cDNA, clone SSM371.       50   0.13   1
(CP000903) Bacillus weihenstephanensis KBAB4, complete genome.     34   0.24   2
(CU633510) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    42   0.43   4
(EJ717448) 1092959430039 Global-Ocean-Sampling_GS-30-02-01-1...    32   0.46   3
(AC132740) Rattus norvegicus clone CH230-227A5, *** SEQUENCI...    36   1.0    2
(AC125999) Rattus norvegicus clone CH230-15O19, WORKING DRAF...    36   1.0    2
(CP001268) Borrelia burgdorferi 156a plasmid 156a_cp32-7, co...    42   1.1    3
(AC197807) Macaca mulatta chromosome UNK clone CH250-202A15,...    32   1.1    2
(AC128924) Rattus norvegicus clone CH230-353I11, WORKING DRA...    36   1.1    2
(GE862404) 1112870022922 BABEVCEREB-C-01-1-7KB Papio anubis ...    36   1.3    2
(AC164537) Mus musculus chromosome 7, clone RP23-68N11, comp...    46   2.0    1
(AC107739) Mus musculus chromosome 7, clone RP23-345M1, comp...    46   2.0    1
(AC213541) Populus trichocarpa clone POP085-K06, complete se...    46   2.0    1
(AC189422) Brassica rapa subsp. pekinensis clone KBrB063M21,...    46   2.0    1
(AC234562) Solanum tuberosum chromosome 5 clone RH197B16, **...    46   2.0    1
(AC224841) Bos taurus clone CH240-475D1, WORKING DRAFT SEQUE...    46   2.0    1
(AC220725) Bos taurus clone CH240-348D18, WORKING DRAFT SEQU...    46   2.0    1
(AC184428) Strongylocentrotus purpuratus clone R3-3076F14, W...    46   2.0    1
(AC184402) Strongylocentrotus purpuratus clone R3-3006I4, WO...    46   2.0    1
(ET685022) CHO_OF352xp02r1.ab1 CHO_OF Nicotiana tabacum geno...    46   2.0    1
(ER855324) PPTFH33TF Solanum tuberosum RHPOTKEY BAC ends Sol...    46   2.0    1
(EK141800) 1095454127215 Global-Ocean-Sampling_GS-31-01-01-1...    46   2.0    1
(CT818650) Paramecium tetraurelia 5-PRIME EST from clone LK0...    46   2.0    1
(EY677625) CS00-C1-401-039-H02-CT.F Sweet orange leaf, infec...    46   2.0    1
(FH016451) CHO_OF446xl14r1.ab1 CHO_OF Nicotiana tabacum geno...    32   2.0    3
(EK510000) 1095515473346 Global-Ocean-Sampling_GS-32-01-01-1...    32   2.2    3
(AC196813) Populus trichocarpa clone Pop1-114I2, complete se...    34   2.3    6
(CP001078) Clostridium botulinum E3 str. Alaska E43, complet...    38   2.3    15
(CP000742) Methanococcus vannielii SB, complete genome.            34   3.3    2
(CU861612) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   3.3    3
(DE274084) Oryzias latipes DNA, clone: ola1-217B05.R, genomi...    42   3.4    2
(AM604064) Entamoeba invadens IP1 GSS, clone inv031c01.p1k.        36   3.5    3
(AC116960) Dictyostelium discoideum chromosome 2 map complem...    30   3.6    9
(AX344569) Sequence 20 from Patent WO0200932.                      36   3.7    6
(FK353494) 454GmaGlobSeed88126 Soybean Seeds Containing Glob...    36   3.8    2
(AC183127) Bos taurus clone CH240-101M6, WORKING DRAFT SEQUE...    34   3.8    2
(AC231258) Monodelphis domestica clone VMRC18-868G18, WORKIN...    32   3.8    2
(AC231480) Monodelphis domestica clone VMRC18-962A8, WORKING...    32   3.9    2
(AK281641) Gryllus bimaculatus mRNA, GBcontig28502.                34   3.9    2
(AC121716) Rattus norvegicus clone CH230-117K2, *** SEQUENCI...    36   4.5    5
(CU856419) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    32   4.5    10
(AC216591) Populus trichocarpa clone POP002-D23, complete se...    38   4.8    6
(AC068031) Homo sapiens chromosome 11 clone RP11-360N22 map ...    38   4.8    3
(AB070263) Bombyx mandarina mitochondrial DNA, complete genome.    38   4.9    4
(EK362887) 1095469299670 Global-Ocean-Sampling_GS-31-01-01-1...    38   5.0    2
(EK265906) 1095462224963 Global-Ocean-Sampling_GS-31-01-01-1...    36   5.3    2
(AL512448) Human DNA sequence from clone RP11-74H9 on chromo...    44   5.4    3
(EJ996165) 1093023090260 Global-Ocean-Sampling_GS-30-02-01-1...    38   5.4    2
(AC147492) Otolemur garnettii clone CH256-54J17, WORKING DRA...    36   5.9    6
(AC099822) Homo sapiens chromosome 15 clone RP11-325E5 map 1...    40   6.5    2
(AE014821) Plasmodium falciparum 3D7 chromosome 14 section 6...    36   7.2    8
(AC116977) Dictyostelium discoideum chromosome 2 map 5515173...    32   7.2    11
(BA000026) Mycoplasma penetrans HF-2 DNA, complete genome.         36   7.3    15
(AY048187) Bombyx mori strain Xiafang mitochondrion, complet...    38   7.4    3
(FJ384796) Bombyx mandarina strain Qingzhou mitochondrion, c...    38   7.5    3
(AM452440) Vitis vinifera contig VV78X102943.6, whole genome...    44   7.6    2
(CR847978) Zebrafish DNA sequence from clone CH211-209D14 in...    44   7.9    1
(CR381633) Zebrafish DNA sequence from clone CH211-230M9 in ...    44   7.9    1
(BX470185) Zebrafish DNA sequence from clone CH211-222D3 in ...    44   7.9    1
(AJ295039) Fugu rubripes mhcl gene, dmrt1 gene, dmrt3 gene a...    44   7.9    1
(BV665998) S217P6919RD1.T0 Noemie Pan troglodytes troglodyte...    44   7.9    1
(AL670024) Mouse DNA sequence from clone RP23-254F7 on chrom...    44   7.9    1
(AC183833) Pan troglodytes BAC clone CH251-141C5 from chromo...    44   7.9    1
(AC183613) Pan troglodytes BAC clone CH251-171F23 from chrom...    44   7.9    1
(FM992688) Candida dubliniensis CD36 chromosome 1, complete ...    44   7.9    1
(CT868736) M.truncatula DNA sequence from clone MTH2-25J4 on...    44   7.9    1
(AM450058) Vitis vinifera contig VV78X108547.35, whole genom...    44   7.9    1
(AC226045) Musa acuminata clone BAC MA4-71P20, complete sequ...    44   7.9    1
(GC701952) Sequence 17197 from patent US 6812339.                  44   7.9    1
(GC696633) Sequence 11877 from patent US 6812339.                  44   7.9    1
(AC107021) Homo sapiens 3 BAC RP11-274H2 (Roswell Park Cance...    44   7.9    1
(AC137367) Rattus norvegicus clone CH230-unknown, *** SEQUEN...    44   7.9    1
(CT573480) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    44   7.9    1
(CT025580) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    44   7.9    1
(AC231812) Oryza minuta clone OM__Ba0118B15, *** SEQUENCING ...    44   7.9    1
(AC018369) Homo sapiens chromosome 3 clone RP11-274H2 map 3,...    44   7.9    1
(ED716791) GM_WBb0066L23.r GM_WBb Glycine max genomic clone ...    44   7.9    1
(DX544512) GH_MBb0026L18f GH_MBb Gossypium hirsutum genomic ...    44   7.9    1
(DU310043) 1097964076635 CHORI-243 Ovis aries genomic clone ...    44   7.9    1
(CZ625777) OM__Ba0164K20.r OM__Ba Oryza minuta genomic clone...    44   7.9    1
(CT533649) A BAC library has been constructed from cultivar ...    44   7.9    1
(CL638344) CH243-1J14.SP6 CHORI-243 Ovis aries genomic clone...    44   7.9    1
(EE106350) SCB02404 Inflorescence with GA3 (VvS12) Vitis vin...    44   7.9    1
(CU560405) Spc_4YM07 cDNA clone of Developmental Stages Libr...    44   7.9    1
(GE372730) 292308091 Nasonia vitripennis Male Pupae Nasonia ...    44   7.9    1
(CP000568) Clostridium thermocellum ATCC 27405, complete gen...    44   7.9    1
(CU234203) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    36   7.9    6
(FB571378) Sequence 245 from Patent EP1865317.                     34   8.2    4
(AM479124) Vitis vinifera contig VV78X038383.7, whole genome...    38   9.1    3
(AB262389) Bombyx mori BMWCP5, BMWCP4, BMWCP3, BMWCP2 genes ...    32   9.3    5
(AC232064) Solanum tuberosum chromosome 1 clone RH085E23, **...    36   9.7    6
(AC011022) Homo sapiens clone RP11-318C12, WORKING DRAFT SEQ...    36   9.8    5
(ET201749) MB04531-5prime MB transposon insertion flanking s...    38   9.8    2

>(C94124) Dictyostelium discoideum slug cDNA, clone SSG437.
          Length = 519

 Score =  549 bits (277), Expect(2) = e-175
 Identities = 277/277 (100%)
 Strand = Plus / Plus


Query: 219 taccatttatatgccaaggttgtcaaggtcaattttgtttagaacataaagaagaaaaag 278
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   taccatttatatgccaaggttgtcaaggtcaattttgtttagaacataaagaagaaaaag 60


Query: 279 aacataaatgtccgactccaattgtaaagattggtggaaccacagttacatgtgataaat 338
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  aacataaatgtccgactccaattgtaaagattggtggaaccacagttacatgtgataaat 120


Query: 339 gtgagagtatattaccagtaccagtaaattgttttgaaaaggatatattatcaatgcacc 398
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gtgagagtatattaccagtaccagtaaattgttttgaaaaggatatattatcaatgcacc 180


Query: 399 taagaaaaggttgccctaaaaagacaacagtaaatcaacataaatgttcattttgtccaa 458
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 taagaaaaggttgccctaaaaagacaacagtaaatcaacataaatgttcattttgtccaa 240


Query: 459 agatggaatcaattaaaatagtttgcccaaattgtaa 495
           |||||||||||||||||||||||||||||||||||||
Sbjct: 241 agatggaatcaattaaaatagtttgcccaaattgtaa 277

 Score =  105 bits (53), Expect(2) = e-175
 Identities = 53/53 (100%)
 Strand = Plus / Plus


Query: 724 gatatgatcaatccttatgaattcatataaaaactgtacaaataaattctcat 776
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 gatatgatcaatccttatgaattcatataaaaactgtacaaataaattctcat 507

 Score =  377 bits (190), Expect = e-100
 Identities = 190/190 (100%)
 Strand = Plus / Plus


Query: 496 ttcattttgtccaaagatggaatcaattaaaatagtttgcccaaattgtaaaaataattt 555
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 227 ttcattttgtccaaagatggaatcaattaaaatagtttgcccaaattgtaaaaataattt 286


Query: 556 ttgtataaaacatagatttgaacgtgaccataaatgtaaacctagagttaatcctcccct 615
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 ttgtataaaacatagatttgaacgtgaccataaatgtaaacctagagttaatcctcccct 346


Query: 616 tcaacaaactatttcaccacatttacaaaatttattatctcaacttagaaattcaaaacc 675
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 tcaacaaactatttcaccacatttacaaaatttattatctcaacttagaaattcaaaacc 406


Query: 676 tgtcaagaca 685
           ||||||||||
Sbjct: 407 tgtcaagaca 416

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 102105510
Number of Hits to DB: 949,950,699
Number of extensions: 62715117
Number of successful extensions: 5672317
Number of sequences better than 10.0: 99
Length of query: 776
Length of database: 101,790,757,118
Length adjustment: 24
Effective length of query: 752
Effective length of database: 99,340,224,878
Effective search space: 74703849108256
Effective search space used: 74703849108256
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7.30
Homology vs Protein 
Query= Contig-U04621-1 (Contig-U04621-1Q) /CSM_Contig/Contig-U04621-1Q.Seq.d
         (776 letters)

Database: nrp_A
           3,268,448 sequences; 1,061,185,681 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

T22914(T22914) hypothetical protein F58E10.4 - Caenorhabditis el...    86   1e-15
FN313766_1(FN313766|pid:none) Schistosoma japonicum isolate Anhu...    80   1e-13
BC149203_1(BC149203|pid:none) Bos taurus zinc finger, AN1-type d...    79   2e-13
(Q8N6M9) RecName: Full=AN1-type zinc finger protein 2A;                77   5e-13
CR848537_1(CR848537|pid:none) Xenopus tropicalis finished cDNA, ...    77   6e-13
BC029558_1(BC029558|pid:none) Homo sapiens zinc finger, AN1-type...    77   8e-13
AK293714_1(AK293714|pid:none) Homo sapiens cDNA FLJ60439 complet...    76   1e-12
AK091345_1(AK091345|pid:none) Homo sapiens cDNA FLJ34026 fis, cl...    76   1e-12
AK004332_1(AK004332|pid:none) Mus musculus 18-day embryo whole b...    76   1e-12
AM463829_4(AM463829|pid:none) Vitis vinifera contig VV78X105031....    75   2e-12
(Q9JII7) RecName: Full=AN1-type zinc finger protein 2A; AltName:...    74   5e-12
(Q0D5B9) RecName: Full=Zinc finger AN1 and C2H2 domain-containin...    72   2e-11
BT047155_1(BT047155|pid:none) Salmo salar clone ssal-rgb-514-070...    72   2e-11
BT046512_1(BT046512|pid:none) Salmo salar clone ssal-rgb2-608-31...    72   2e-11
AK292622_1(AK292622|pid:none) Homo sapiens cDNA FLJ78328 complet...    72   2e-11
BC106225_1(BC106225|pid:none) Xenopus laevis hypothetical LOC496...    72   2e-11
BT047368_1(BT047368|pid:none) Salmo salar clone ssal-rgb2-617-24...    72   2e-11
(Q67YE6) RecName: Full=Zinc finger AN1 domain-containing stress-...    72   2e-11
BC055589_1(BC055589|pid:none) Danio rerio zinc finger, AN1-type ...    72   3e-11
BT041206_1(BT041206|pid:none) Zea mays full-length cDNA clone ZM...    71   3e-11
EF396223_1(EF396223|pid:none) Zea mays AN110 mRNA, complete cds.       71   3e-11
BC146106_1(BC146106|pid:none) Bos taurus zinc finger, AN1-type d...    71   4e-11
BC076430_1(BC076430|pid:none) Danio rerio zinc finger, AN1-type ...    70   6e-11
AK009240_1(AK009240|pid:none) Mus musculus adult male tongue cDN...    69   1e-10
(Q8BFR6) RecName: Full=AN1-type zinc finger protein 1;  &AK03047...    69   2e-10
BT079580_1(BT079580|pid:none) Esox lucius clone eluc-evq-539-072...    69   2e-10
BT080632_1(BT080632|pid:none) Caligus clemensi clone ccle-evs-51...    69   2e-10
AK024069_1(AK024069|pid:none) Homo sapiens cDNA FLJ14007 fis, cl...    68   4e-10
AB378635_1(AB378635|pid:none) Lotus japonicus ZF-G96 mRNA for tr...    68   4e-10
(Q8TCF1) RecName: Full=AN1-type zinc finger protein 1;  &BC02225...    68   4e-10
AX886109_1(AX886109|pid:none) Sequence 1972 from Patent EP1033401.     67   8e-10
BT052570_1(BT052570|pid:none) Medicago truncatula clone MTYFD_FE...    66   1e-09
BT080439_1(BT080439|pid:none) Caligus clemensi clone ccle-evs-50...    66   1e-09
AM920428_647(AM920428|pid:none) Penicillium chrysogenum Wisconsi...    65   2e-09
AJ870302_1(AJ870302|pid:none) Cucumis sativus mRNA for putative ...    65   3e-09
FJ442210_1(FJ442210|pid:none) Solanum pennellii stress-associate...    62   2e-08
BT078249_1(BT078249|pid:none) Lepeophtheirus salmonis Pacific fo...    61   5e-08
EF083678_1(EF083678|pid:none) Picea sitchensis clone WS0289_I14 ...    60   8e-08
FJ442197_1(FJ442197|pid:none) Solanum lycopersicum stress-associ...    60   8e-08
(Q6H595) RecName: Full=Zinc finger AN1 domain-containing stress-...    57   5e-07
CU638744_576(CU638744|pid:none) Podospora anserina genomic DNA c...    57   7e-07
EU967383_1(EU967383|pid:none) Zea mays clone 302213 unknown mRNA.      54   4e-06
AM910992_291(AM910992|pid:none) Plasmodium knowlesi strain H chr...    54   6e-06
AM494955_121(AM494955|pid:none) Leishmania braziliensis chromoso...    53   1e-05
AY813145_1(AY813145|pid:none) Schistosoma japonicum clone SJCHGC...    52   3e-05
FN318731_1(FN318731|pid:none) Schistosoma japonicum isolate Anhu...    52   3e-05
AL844504_40(AL844504|pid:none) Plasmodium falciparum 3D7 chromos...    51   5e-05
BT075455_1(BT075455|pid:none) Osmerus mordax clone omor-eva-502-...    50   6e-05
FN357358_15(FN357358|pid:none) Schistosoma mansoni genome sequen...    50   8e-05
CT005257_112(CT005257|pid:none) Leishmania major strain Friedlin...    49   1e-04
AM502236_113(AM502236|pid:none) Leishmania infantum chromosome 18.     47   5e-04
AK340299_1(AK340299|pid:none) Acyrthosiphon pisum ACYPI008410 mR...    47   9e-04
AK340298_1(AK340298|pid:none) Acyrthosiphon pisum ACYPI008410 mR...    42   0.022
BT083273_1(BT083273|pid:none) Anoplopoma fimbria clone afim-evh-...    41   0.049
FJ442198_1(FJ442198|pid:none) Solanum lycopersicum stress-associ...    40   0.11
CU928166_253(CU928166|pid:none) Kluyveromyces thermotolerans str...    39   0.24
CP000903_1152(CP000903|pid:none) Bacillus weihenstephanensis KBA...    38   0.42
AB126056_1(AB126056|pid:none) Bombyx mori DNA, chromosome W, BAC...    37   0.71
AM502243_66(AM502243|pid:none) Leishmania infantum chromosome 25.      36   1.2
AM460819_2(AM460819|pid:none) Vitis vinifera contig VV78X099670....    36   1.2
CP000500_293(CP000500|pid:none) Pichia stipitis CBS 6054 chromos...    36   1.6
AE000657_327(AE000657|pid:none) Aquifex aeolicus VF5, complete g...    35   2.7
CU928179_217(CU928179|pid:none) Zygosaccharomyces rouxii strain ...    35   3.5
AM114193_2651(AM114193|pid:none) Uncultured methanogenic archaeo...    35   3.5
AC146569_13(AC146569|pid:none) Medicago truncatula clone mth2-10...    35   3.5
CU928168_688(CU928168|pid:none) Kluyveromyces thermotolerans str...    35   3.5
BX294024_10(BX294024|pid:none) Neurospora crassa DNA linkage gro...    34   4.6
AM269977_6(AM269977|pid:none) Aspergillus niger contig An01c0300...    34   6.0
AP002745_9(AP002745|pid:none) Oryza sativa Japonica Group genomi...    34   6.0
(Q3IU54) RecName: Full=DNA polymerase II large subunit;         ...    34   6.0
CP000679_2299(CP000679|pid:none) Caldicellulosiruptor saccharoly...    34   6.0
A69511_1(A69511|pid:none) Sequence 1 from Patent WO9807748.  &U6...    33   7.8
AB209131_1(AB209131|pid:none) Homo sapiens mRNA for Pleiomorphic...    33   7.8
AE017352_240(AE017352|pid:none) Cryptococcus neoformans var. neo...    33   7.8
AB384858_1(AB384858|pid:none) Synthetic construct DNA, clone: pF...    33   7.8
EU016657_23(EU016657|pid:none) Uncultured Group I marine crenarc...    33   7.8
AK313663_1(AK313663|pid:none) Homo sapiens cDNA, FLJ94244, highl...    33   7.8
(Q9V2F4) RecName: Full=DNA polymerase II large subunit;         ...    33   7.8

>T22914(T22914) hypothetical protein F58E10.4 - Caenorhabditis
           elegans  &Z81555_6(Z81555|pid:none)
          Length = 202

 Score = 85.9 bits (211), Expect = 1e-15
 Identities = 47/150 (31%), Positives = 67/150 (44%), Gaps = 2/150 (1%)
 Frame = +2

Query: 161 DLDKVGVHCAIKDCNLLDFLPFICQGCQGQFCLXXXXXXXXXCPTPIVKIGGTTVTCDKC 340
           +   +G HC    CN LDFLP  C GC   +C          CPT   +I      C  C
Sbjct: 3   EFPNLGKHCESTVCNRLDFLPIKCSGCGHFYCSEHFTFEAHNCPTGS-RISVQVPICPIC 61

Query: 341 ESILPVPVNCFEKDILSMHLRKGC--PKKTTVNQHKCSFCPKMESIKIVCPNCNSFCPKM 514
           E  +P P +      ++ H++  C  PK+  V  + C+  PK              C K
Sbjct: 62  EKPVPTPKDVNVDQQVNEHIQNNCQTPKRAKVYSNACTV-PK--------------CKKK 106

Query: 515 ESIKIVCPNCKNNFCIKHRFERDHKCKPRV 604
           E + + C  C+NN+C+ HR ERDH C+ +V
Sbjct: 107 ELVAMNCSKCRNNYCLSHRHERDHSCERKV 136

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3268448
Number of Hits to DB: 1,071,611,630
Number of extensions: 20573880
Number of successful extensions: 52363
Number of sequences better than 10.0: 78
Number of HSP's gapped: 51786
Number of HSP's successfully gapped: 88
Length of query: 258
Length of database: 1,061,185,681
Length adjustment: 126
Effective length of query: 132
Effective length of database: 649,361,233
Effective search space: 85715682756
Effective search space used: 85715682756
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 31 (16.5 bits)
PSORT 

 psg: 0.44  gvh: 0.67  alm: 0.44  top: 0.53  tms: 0.00  mit: 0.21  mip: 0.00
 nuc: 0.08  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: cytoplasmic
	 36.0 %: nuclear
	  4.0 %: extracellular, including cell wall
	  4.0 %: cytoskeletal
	  4.0 %: mitochondrial

>> prediction for Contig-U04621-1 is cyt
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 3
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0