NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U04598-1
Contig ID Contig-U04598-1
Contig update 2001. 8.29
Contig sequence 
>Contig-U04598-1 (Contig-U04598-1Q) /CSM_Contig/Contig-U04598-1Q.Seq.d
AATAAACTTTATTATATTTTTCAAAAGAGTTGTTTTATTATTTTATATTT
ATAAAATTTCAAAACAAATAACTAGTATTTATAATTACTAAAAACATAAT
AAAAAAAAATCCAATAAAAAAAAAAATGATGCTCTCCACTGTTAATTTAA
ATAGTAGTATCTCCAAAGAGAATTCAGGTCAAATCAATGGATTATCAATG
AAGAAGAATTCAATTAATAATAATATCAATTCTCATACACCTCTTCAACC
AGGTTCTCTATCTCATTTAAAACATAAACTATATGGATCAAGTAATAACA
ACACAACAGAAAGAAAAGCACTTGGTGAAATTACCAACACAACCTCAAAA
TTCAATAATAGCAATGGTGGCAGTGGTGCAAATAAAAAATCATCCTCTTC
CTTTTCATCATCTGCTGATAATAAATTACTTTTTGTACCAACTTCAAATA
CACCACAAATTAGAAAAAAAATCAATACAACTACTTTACCAATTATTTCA
AATAATTTATCATCAGTTGCAAAAGTAAAGAAACCATCAGTTGTTGTCGA
TAATATTAATAATTCACCATTACATGATAATAATACTATTCATTCTGCAC
CACCTGCACCACTTAGATTATCATCAAAACTTTCAAATCATTCAATTGAA
TCATTAATAATGACACCATCTTTTGATCTTCCAATCTCTGGTTACACTGA
ATCCTTTGAAGAAGACATTTACAAATTTGAACAAAATAACAACTATCAAT
CAAATGACGACCACTCATTAATGATTGAAGATAATTTTTCATTTAGTGAT
TACTATCAAGATATCTCTCTTTAATTTTCTTTCAATCAAAACATGTATTC
AAATTTGTAAATAGCTCAACAATATAATAATTTCTAACAAAAACAAAAAA
GGTTATTCCTCTGTAAAAAATAAAATAGTTATAGTTGGTAACTTTGTTTT
CTAATTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAA
Gap no gap
Contig length 1006
Chromosome number (1..6, M) 3
Chromosome length 6358359
Start point 1445897
End point 1444891
Strand (PLUS/MINUS) MINUS
Number of clones 7
Number of EST 9
Link to clone list U04598
List of clone(s) 

est1=SSI670E,1,956
est2=VSG214F,4,125
est3=VSJ424F,7,125
est4=SSB734Z,345,960
est5=VSJ424Z,387,934
est6=VSG214Z,449,934
est7=SSE427Z,472,977
est8=VSC803Z,489,1007
est9=SSH659Z,612,981
Translated Amino Acid sequence 
*tllyfskelfyyfifikfqnk*LVFIITKNIIKKNPIKKKMMLSTVNLNSSISKENSGQ
INGLSMKKNSINNNINSHTPLQPGSLSHLKHKLYGSSNNNTTERKALGEITNTTSKFNNS
NGGSGANKKSSSSFSSSADNKLLFVPTSNTPQIRKKINTTTLPIISNNLSSVAKVKKPSV
VVDNINNSPLHDNNTIHSAPPAPLRLSSKLSNHSIESLIMTPSFDLPISGYTESFEEDIY
KFEQNNNYQSNDDHSLMIEDNFSFSDYYQDISL*fsfnqnmysnl*iaqqynnf*qkqkr
lflckk*nsysw*lcfli*kkkkkkkkkkkkkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
nklyyifqkscfiilyl*nfktnn*yl*llkt**kkiq*kkk*csplli*ivvspkriqv
ksmdyq*rriqliiisilihlfnqvlyli*ninymdqvittqqkekhlvklptqpqnsii
amvavvqiknhplpfhhlliinyflyqlqihhklekksiqllyqlfqiiyhqlqk*rnhq
llsiiliihhymiiilfilhhlhhldyhqnfqiiqlnh***hhllifqslvtlnplkktf
tnlnkittinqmttth**lkiifhlvitikislfnflsiktciqick*lnniiisnknkk
gyssvknkivivgnfvf*fkkkkkkkkkkkkkkkk


Frame B:
infiiffkrvvllfyiykiskqitsiyny*khnkkksnkkkndalhc*fk**ylqrefrs
nqwiineeefn***yqfsytsstrfsisfkt*tiwik**qhnrkkstw*nyqhnlkiq**
qwwqwck*kiilflfiic***itfctnfkyttn*kknqynyftnyfk*fiiscksketis
ccr*y**ftit***yysfcttctt*iiiktfksfn*iinndtif*ssnlwlh*il*rrhl
qi*tk*qlsik*rplind*r*ffi**llsrylsliffqskhvfkfvnssti**fltktkk
vipl*kik*l*lvtlfsnlkkkkkkkkkkkkkkkk


Frame C:
*tllyfskelfyyfifikfqnk*LVFIITKNIIKKNPIKKKMMLSTVNLNSSISKENSGQ
INGLSMKKNSINNNINSHTPLQPGSLSHLKHKLYGSSNNNTTERKALGEITNTTSKFNNS
NGGSGANKKSSSSFSSSADNKLLFVPTSNTPQIRKKINTTTLPIISNNLSSVAKVKKPSV
VVDNINNSPLHDNNTIHSAPPAPLRLSSKLSNHSIESLIMTPSFDLPISGYTESFEEDIY
KFEQNNNYQSNDDHSLMIEDNFSFSDYYQDISL*fsfnqnmysnl*iaqqynnf*qkqkr
lflckk*nsysw*lcfli*kkkkkkkkkkkkkkk
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U04598-1 (Contig-U04598-1Q)
/CSM_Contig/Contig-U04598-1Q.Seq.d
         (1006 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U04598-1 (Contig-U04598-1Q) /CSM_Contig/Conti...  1528  0.0
Contig-U14883-1 (Contig-U14883-1Q) /CSM_Contig/Conti...    44  3e-04
Contig-U13431-1 (Contig-U13431-1Q) /CSM_Contig/Conti...    44  3e-04
Contig-U01385-1 (Contig-U01385-1Q) /CSM_Contig/Conti...    42  0.001
Contig-U14510-1 (Contig-U14510-1Q) /CSM_Contig/Conti...    38  0.018
Contig-U13715-1 (Contig-U13715-1Q) /CSM_Contig/Conti...    38  0.018
Contig-U12118-1 (Contig-U12118-1Q) /CSM_Contig/Conti...    38  0.018
Contig-U06984-1 (Contig-U06984-1Q) /CSM_Contig/Conti...    38  0.018
Contig-U06101-1 (Contig-U06101-1Q) /CSM_Contig/Conti...    38  0.018
Contig-U12433-1 (Contig-U12433-1Q) /CSM_Contig/Conti...    36  0.071

>Contig-U04598-1 (Contig-U04598-1Q) /CSM_Contig/Contig-U04598-1Q.Seq.d
          Length = 1006

 Score = 1528 bits (771), Expect = 0.0
 Identities = 811/831 (97%)
 Strand = Plus / Plus

                                                                       
Query: 127 tgatgctctccactgttaatttaaatagtagtatctccaaagagaattcaggtcaaatca 186
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 127 tgatgctctccactgttaatttaaatagtagtatctccaaagagaattcaggtcaaatca 186

                                                                       
Query: 187 atggattatcaatgaagaagaattcaattaataataatatcaattctcatacacctcttc 246
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 187 atggattatcaatgaagaagaattcaattaataataatatcaattctcatacacctcttc 246

                                                                       
Query: 247 aaccaggttctctatctcatttaaaacataaactatatggatcaagtaataacaacacaa 306
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 aaccaggttctctatctcatttaaaacataaactatatggatcaagtaataacaacacaa 306

                                                                       
Query: 307 cagaaagaaaagcacttggtgaaattaccaacacaacctcaaaattcaataatagcaatg 366
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 cagaaagaaaagcacttggtgaaattaccaacacaacctcaaaattcaataatagcaatg 366

                                                                       
Query: 367 gtggcagtggtgcaaataaaaaatcatcctcttccttttcatcatctgctgataataaat 426
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 gtggcagtggtgcaaataaaaaatcatcctcttccttttcatcatctgctgataataaat 426

                                                                       
Query: 427 tactttttgtaccaacttcaaatacaccacaaattagnnnnnnnntcaatacaactactt 486
           |||||||||||||||||||||||||||||||||||||        |||||||||||||||
Sbjct: 427 tactttttgtaccaacttcaaatacaccacaaattagaaaaaaaatcaatacaactactt 486

                                                                       
Query: 487 taccaattatttcaaataatttatcatcagttgcaaaagtaaagaaaccatcagttgttg 546
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 taccaattatttcaaataatttatcatcagttgcaaaagtaaagaaaccatcagttgttg 546

                                                                       
Query: 547 tcgataatattaataattcaccattacatgataataatactattcattctgcaccacctg 606
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 tcgataatattaataattcaccattacatgataataatactattcattctgcaccacctg 606

                                                                       
Query: 607 caccacttagattatcatcaaaactttcaaatcattcaattgaatcattaataatgacac 666
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 caccacttagattatcatcaaaactttcaaatcattcaattgaatcattaataatgacac 666

                                                                       
Query: 667 catcttttgatcttccaatctctggttacactgaatcctttgaagaagacatttacaaat 726
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 667 catcttttgatcttccaatctctggttacactgaatcctttgaagaagacatttacaaat 726

                                                                       
Query: 727 ttgaacaaaataacaactatcaatcaaatgacgaccactcattaatgattgaagataatt 786
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 727 ttgaacaaaataacaactatcaatcaaatgacgaccactcattaatgattgaagataatt 786

                                                                       
Query: 787 tttcatttagtgattactatcaagatatctctctttaattttctttcaatcaaaacatgt 846
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 787 tttcatttagtgattactatcaagatatctctctttaattttctttcaatcaaaacatgt 846

                                                                       
Query: 847 attcaaatttgtaaatagctcaacaatataataatttctaacnnnnnnnnnnnnggttat 906
           ||||||||||||||||||||||||||||||||||||||||||            ||||||
Sbjct: 847 attcaaatttgtaaatagctcaacaatataataatttctaacaaaaacaaaaaaggttat 906

                                                              
Query: 907 tcctctgtaaaaaataaaatagttatagttggtaactttgttttctaattt 957
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 907 tcctctgtaaaaaataaaatagttatagttggtaactttgttttctaattt 957


 Score = 58.0 bits (29), Expect = 2e-08
 Identities = 29/29 (100%)
 Strand = Plus / Plus

                                       
Query: 60 caaaacaaataactagtatttataattac 88
          |||||||||||||||||||||||||||||
Sbjct: 60 caaaacaaataactagtatttataattac 88


 Score = 30.2 bits (15), Expect = 4.4
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                          
Query: 848 ttcaaatttgtaaat 862
           |||||||||||||||
Sbjct: 731 ttcaaatttgtaaat 717


 Score = 30.2 bits (15), Expect = 4.4
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                          
Query: 717 atttacaaatttgaa 731
           |||||||||||||||
Sbjct: 862 atttacaaatttgaa 848


>Contig-U14883-1 (Contig-U14883-1Q) /CSM_Contig/Contig-U14883-1Q.Seq.d
          Length = 749

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                         
Query: 485 tttaccaattatttcaaataatttatcatc 514
           ||||||||| |||||||| |||||||||||
Sbjct: 453 tttaccaataatttcaaagaatttatcatc 424


>Contig-U13431-1 (Contig-U13431-1Q) /CSM_Contig/Contig-U13431-1Q.Seq.d
          Length = 1075

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                         
Query: 485 tttaccaattatttcaaataatttatcatc 514
           ||||||||| |||||||| |||||||||||
Sbjct: 368 tttaccaataatttcaaagaatttatcatc 339


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 34,031
Number of Sequences: 6905
Number of extensions: 34031
Number of successful extensions: 3158
Number of sequences better than 10.0: 319
length of query: 1006
length of database: 5,674,871
effective HSP length: 16
effective length of query: 990
effective length of database: 5,564,391
effective search space: 5508747090
effective search space used: 5508747090
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2009. 6.26
Homology vs DNA 
Query= Contig-U04598-1 (Contig-U04598-1Q) /CSM_Contig/Contig-U04598-1Q.Seq.d
         (1006 letters)

Database: ddbj_A
           102,105,510 sequences; 101,790,757,118 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(C90525) Dictyostelium discoideum slug cDNA, clone SSI670.        827   0.0    3
(AU037299) Dictyostelium discoideum slug cDNA, clone SSB734.      807   0.0    3
(AU269895) Dictyostelium discoideum vegetative cDNA clone:VS...   819   0.0    2
(AU266139) Dictyostelium discoideum vegetative cDNA clone:VS...   819   0.0    2
(AU037893) Dictyostelium discoideum slug cDNA, clone SSE427.      783   0.0    2
(AU262799) Dictyostelium discoideum vegetative cDNA clone:VS...   678   0.0    2
(AU038394) Dictyostelium discoideum slug cDNA, clone SSH659.      541   e-162  2
(AU073900) Dictyostelium discoideum slug cDNA, clone SSI670.      226   1e-54  1
(AC116984) Dictyostelium discoideum chromosome 2 map 2567470...    38   0.006  17
(AC116963) Dictyostelium discoideum chromosome 2 map 4657875...    46   0.032  13
(CP000721) Clostridium beijerinckii NCIMB 8052, complete gen...    52   0.042  1
(AJ010592) Guillardia theta DNA for complete sequence of nuc...    44   0.069  7
(AC205876) Homo sapiens FOSMID clone ABC9-41271200D24 from c...    48   0.11   2
(AC116986) Dictyostelium discoideum chromosome 2 map 2234041...    36   0.30   11
(AL735588) Danio rerio genomic clone DKEY-7O24, genomic surv...    44   0.45   2
(CN552044) tae18g04.x1 Hydra EST Darmstadt I Hydra magnipapi...    38   0.45   3
(AC126792) Medicago truncatula clone mth2-8o8, complete sequ...    34   0.47   7
(GE566040) CCHT23831.b1_M05.ab1 CCHT Niger Seed Guizotia aby...    36   0.48   2
(AC181143) Strongylocentrotus purpuratus clone R3-16E2, WORK...    40   0.54   5
(BX145762) Danio rerio genomic clone DKEY-108G13, genomic su...    44   0.57   2
(ER471422) 1092963959506 Global-Ocean-Sampling_GS-35-01-01-1...    40   0.58   2
(AL049649) Human DNA sequence from clone RP4-734C18 on chrom...    48   0.66   1
(CX018094) R2082 pPCR Arachis hypogaea cDNA 5', mRNA sequence.     48   0.66   1
(CX018030) R2070 pPCR Arachis hypogaea cDNA 5', mRNA sequence.     48   0.66   1
(CS468856) Sequence 47 from Patent EP1748080.                      30   0.90   8
(CS468855) Sequence 46 from Patent EP1748080.                      30   0.90   8
(CS419333) Sequence 47 from Patent WO2006094836.                   30   0.90   8
(CS419332) Sequence 46 from Patent WO2006094836.                   30   0.90   8
(AP008983) Clostridium phage c-st genomic DNA, complete genome.    36   0.97   8
(AC116977) Dictyostelium discoideum chromosome 2 map 5515173...    34   1.0    10
(AF547983) Schizosaccharomyces japonicus mitochondrial DNA, ...    34   1.2    7
(CP000942) Ureaplasma parvum serovar 3 str. ATCC 27815, comp...    34   1.2    15
(AF222894) Ureaplasma parvum serovar 3 str. ATCC 700970, com...    34   1.2    15
(AC183665) Pan troglodytes BAC clone CH251-655J2 from chromo...    36   1.3    2
(AC093138) Pan troglodytes clone RP43-154A20, WORKING DRAFT ...    36   1.3    2
(AC187625) Pan troglodytes BAC clone CH251-423K24 from chrom...    36   1.4    2
(AC093189) Pan troglodytes clone RP43-17P3, WORKING DRAFT SE...    36   1.4    2
(AJ010770) Homo sapiens hyperion gene, exons 1-50.                 36   1.4    2
(AC087554) Papio anubis clone RP41-462H16, WORKING DRAFT SEQ...    36   1.4    2
(AC161937) Pan troglodytes BAC clone CH251-441C24 from chrom...    36   1.4    2
(AC000066) Homo sapiens BAC clone CTA-293F11 from 7q21-7q22,...    36   1.4    2
(EY363952) CAWZ9055.rev CAWZ Helobdella robusta Primary Late...    34   1.8    2
(EY361481) CAWZ7747.rev CAWZ Helobdella robusta Primary Late...    34   1.8    2
(EY347664) CAWZ15738.rev CAWZ Helobdella robusta Primary Lat...    34   1.8    2
(EY324088) CAWX9746.rev CAWX Helobdella robusta Primary Earl...    34   1.8    2
(BF294825) 009PbC04 Pb cDNA #17, Tommaso Pace, Marta Ponzi, ...    42   1.9    2
(AC212653) Solanum lycopersicum chromosome 7 clone C07SLm009...    34   1.9    7
(EJ361816) 1092963690404 Global-Ocean-Sampling_GS-28-01-01-1...    42   2.3    2
(AC225851) Gorilla gorilla gorilla clone CH255-391G20, WORKI...    40   2.4    5
(AY299564) Buteo buteo arrigonii strain b.arr3 mitochondrial...    46   2.6    1
(FM992693) Candida dubliniensis CD36 chromosome 6, complete ...    46   2.6    1
(AP008211) Oryza sativa (japonica cultivar-group) genomic DN...    46   2.6    1
(AE017345) Cryptococcus neoformans var. neoformans JEC21 chr...    46   2.6    1
(AC134932) Oryza sativa Japonica Group chromosome 5 clone OS...    46   2.6    1
(CU927970) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    46   2.6    1
(CU468178) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    46   2.6    1
(CU062412) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    46   2.6    1
(CT573320) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    46   2.6    1
(CT453708) Sus scrofa genomic clone CH242-435O5, genomic sur...    46   2.6    1
(CL519643) SAI1D01 Flanking Sequence Tag of Oryza sativa T-D...    46   2.6    1
(EG893745) EST_ssal_evf_51272 ssalevf mixed_tissue Salmo sal...    46   2.6    1
(DN031979) JGI_CAAR8715.fwd NIH_XGC_tropLiv1 Xenopus (Silura...    46   2.6    1
(DN031978) JGI_CAAR8715.rev NIH_XGC_tropLiv1 Xenopus (Silura...    46   2.6    1
(CO113386) GR__Eb013J15.r GR__Eb Gossypium raimondii cDNA cl...    46   2.6    1
(CO105912) GR__Eb0036F06.r GR__Eb Gossypium raimondii cDNA c...    46   2.6    1
(CN238777) EST004631 Mycelium and yeast cells from Paracocci...    46   2.6    1
(FB571381) Sequence 248 from Patent EP1865317.                     32   2.8    10
(FB571325) Sequence 192 from Patent EP1865317.                     32   2.8    10
(AL354685) Human DNA sequence from clone RP13-75G22 on chrom...    36   3.0    9
(FM992689) Candida dubliniensis CD36 chromosome 2, complete ...    36   3.5    19
(CP001161) Buchnera aphidicola str. 5A (Acyrthosiphon pisum)...    34   4.0    11
(AL672104) Human DNA sequence from clone XXbac-3L13 on chrom...    36   4.1    3
(DC198322) Plasmodium berghei cDNA clone:LV007415, liver sta...    42   5.0    2
(AC233434) Solanum tuberosum chromosome 5 clone RH081B09, **...    34   5.1    8
(AP004915) Lotus japonicus genomic DNA, chromosome 4, clone:...    34   5.1    2
(CR759895) Zebrafish DNA sequence from clone DKEY-202N12 in ...    36   5.2    8
(BX296564) Human DNA sequence from clone DASS-256O6 on chrom...    36   5.3    3
(CU914685) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    36   5.5    6
(DC198521) Plasmodium berghei cDNA clone:LV007874, liver sta...    42   5.5    2
(BX511190) Zebrafish DNA sequence from clone RP71-80D18 in l...    36   5.6    6
(X03240) Drosophila yakuba complete mitochondrial sequence.        34   6.0    5
(AC113786) Rattus norvegicus clone CH230-100C4, WORKING DRAF...    36   6.4    6
(DE951943) Macropus eugenii DNA, BAC clone: MEB1-150E10_R, 3...    32   6.6    2
(AC117176) Dictyostelium discoideum chromosome 2 map 5018074...    32   6.7    10
(AG954725) Drosophila sechellia DNA, clone: DSE1-008I03.R.fa...    34   6.7    2
(AG958092) Drosophila sechellia DNA, clone: DSE1-014J13.F.fa...    34   6.7    2
(AM423509) Vitis vinifera contig VV78X227158.3, whole genome...    40   6.9    3
(CR382400) Plasmodium falciparum chromosome 6, complete sequ...    40   6.9    10
(AC225523) Medicago truncatula clone mth2-144h15, WORKING DR...    34   7.0    5
(AC116982) Dictyostelium discoideum chromosome 2 map 3622643...    32   7.3    11
(AC115592) Dictyostelium discoideum chromosome 2 map 1-12595...    34   7.4    6
(EI476053) PV_GBa0086J17.r PV_GBa Phaseolus vulgaris genomic...    40   7.6    2
(AX346828) Sequence 1899 from Patent WO0200928.                    36   7.7    2
(CU576528) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    40   8.0    3
(BX927213) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    36   8.3    3
(CR751225) Zebrafish DNA sequence from clone DKEY-246I6 in l...    38   8.4    5
(CD145555) MG1-0105U-A350-A05-U.B MG1-0105 Schistosoma manso...    34   8.5    3
(EK311528) 1095462398878 Global-Ocean-Sampling_GS-31-01-01-1...    42   8.6    2
(EJ742140) 1092962027400 Global-Ocean-Sampling_GS-30-02-01-1...    40   8.8    2
(EC985630) WIN1125.C21_G06 Muscat Hamburg pre-veraison berry...    38   8.8    2
(BE037615) AA01H04 AA Arabidopsis thaliana cDNA 5', mRNA seq...    36   8.8    2
(AC168741) Strongylocentrotus purpuratus clone R3-3010C20, W...    38   9.1    5
(BX293980) Mycoplasma mycoides subsp. mycoides SC str. PG1, ...    36   9.1    16
(ES880350) TlEST190 Toxascaris leonina adult worm cDNA libra...    40   9.2    2
(ER295651) 1092343645632 Global-Ocean-Sampling_GS-34-01-01-1...    42   9.3    2
(AC116989) Dictyostelium discoideum chromosome 2 map 4545040...    38   9.9    4

>(C90525) Dictyostelium discoideum slug cDNA, clone SSI670.
          Length = 661

 Score =  827 bits (417), Expect(3) = 0.0
 Identities = 417/417 (100%)
 Strand = Plus / Plus


Query: 472 tcaatacaactactttaccaattatttcaaataatttatcatcagttgcaaaagtaaaga 531
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 177 tcaatacaactactttaccaattatttcaaataatttatcatcagttgcaaaagtaaaga 236


Query: 532 aaccatcagttgttgtcgataatattaataattcaccattacatgataataatactattc 591
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 237 aaccatcagttgttgtcgataatattaataattcaccattacatgataataatactattc 296


Query: 592 attctgcaccacctgcaccacttagattatcatcaaaactttcaaatcattcaattgaat 651
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 attctgcaccacctgcaccacttagattatcatcaaaactttcaaatcattcaattgaat 356


Query: 652 cattaataatgacaccatcttttgatcttccaatctctggttacactgaatcctttgaag 711
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 cattaataatgacaccatcttttgatcttccaatctctggttacactgaatcctttgaag 416


Query: 712 aagacatttacaaatttgaacaaaataacaactatcaatcaaatgacgaccactcattaa 771
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 aagacatttacaaatttgaacaaaataacaactatcaatcaaatgacgaccactcattaa 476


Query: 772 tgattgaagataatttttcatttagtgattactatcaagatatctctctttaattttctt 831
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 tgattgaagataatttttcatttagtgattactatcaagatatctctctttaattttctt 536


Query: 832 tcaatcaaaacatgtattcaaatttgtaaatagctcaacaatataataatttctaac 888
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 tcaatcaaaacatgtattcaaatttgtaaatagctcaacaatataataatttctaac 593

 Score =  333 bits (168), Expect(3) = 0.0
 Identities = 168/168 (100%)
 Strand = Plus / Plus


Query: 296 taacaacacaacagaaagaaaagcacttggtgaaattaccaacacaacctcaaaattcaa 355
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   taacaacacaacagaaagaaaagcacttggtgaaattaccaacacaacctcaaaattcaa 60


Query: 356 taatagcaatggtggcagtggtgcaaataaaaaatcatcctcttccttttcatcatctgc 415
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  taatagcaatggtggcagtggtgcaaataaaaaatcatcctcttccttttcatcatctgc 120


Query: 416 tgataataaattactttttgtaccaacttcaaatacaccacaaattag 463
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tgataataaattactttttgtaccaacttcaaatacaccacaaattag 168

 Score = 58.0 bits (29), Expect(3) = 0.0
 Identities = 29/29 (100%)
 Strand = Plus / Plus


Query: 926 tagttatagttggtaactttgttttctaa 954
           |||||||||||||||||||||||||||||
Sbjct: 631 tagttatagttggtaactttgttttctaa 659

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 102105510
Number of Hits to DB: 1,210,013,419
Number of extensions: 81585545
Number of successful extensions: 6712968
Number of sequences better than 10.0: 106
Length of query: 1006
Length of database: 101,790,757,118
Length adjustment: 24
Effective length of query: 982
Effective length of database: 99,340,224,878
Effective search space: 97552100830196
Effective search space used: 97552100830196
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7.30
Homology vs Protein 
Query= Contig-U04598-1 (Contig-U04598-1Q) /CSM_Contig/Contig-U04598-1Q.Seq.d
         (1006 letters)

Database: nrp_A
           3,268,448 sequences; 1,061,185,681 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q55GK3) RecName: Full=Myb-like protein M;                             37   1.1
(Q54QM6) RecName: Full=M-phase inducer phosphatase;          EC=...    35   3.2
AB039883_1(AB039883|pid:none) Dictyostelium discoideum gene for ...    35   3.2
HB439845_1(HB439845|pid:none) Sequence 2663 from Patent WO200907...    35   4.1
AE013599_500(AE013599|pid:none) Drosophila melanogaster chromoso...    35   4.1
AY058689_1(AY058689|pid:none) Drosophila melanogaster LD40801 fu...    35   4.1
AL844504_65(AL844504|pid:none) Plasmodium falciparum strain 3D7,...    35   4.1
AJ296093_1(AJ296093|pid:none) Candida tropicalis hsr1 gene for h...    35   5.4

>(Q55GK3) RecName: Full=Myb-like protein M;
          Length = 669

 Score = 37.0 bits (84), Expect = 1.1
 Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
 Frame = +3

Query: 579 NNTIHSAPPAPLRLSSKLSNHSIESLIMTPSFDLPISGYTESFE-EDIYKFEQNNNYQSN 755
           NN+I    P+P   + K       +++ TPS   P S    +F   +I   E NNN  +N
Sbjct: 466 NNSIRQPSPSPSIKTFK------STIVSTPSRPSPSSSTNSAFSINNIIDSENNNNNNNN 519

Query: 756 DDHSLMIEDN 785
           D+ ++ +EDN
Sbjct: 520 DNDNIKVEDN 529

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3268448
Number of Hits to DB: 1,131,162,879
Number of extensions: 17863435
Number of successful extensions: 48624
Number of sequences better than 10.0: 8
Number of HSP's gapped: 48510
Number of HSP's successfully gapped: 8
Length of query: 335
Length of database: 1,061,185,681
Length adjustment: 129
Effective length of query: 206
Effective length of database: 639,555,889
Effective search space: 131748513134
Effective search space used: 131748513134
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
PSORT 

 psg: 0.41  gvh: 0.43  alm: 0.50  top: 0.53  tms: 0.00  mit: 0.36  mip: 0.00
 nuc: 0.10  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.33  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: nuclear
	 28.0 %: mitochondrial
	 16.0 %: cytoplasmic
	  4.0 %: cytoskeletal
	  4.0 %: vesicles of secretory system

>> prediction for Contig-U04598-1 is nuc
VS (DIR, S) 3
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 4
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0