Contig-U04589-1
Contig ID Contig-U04589-1
Contig update 2001. 8.29
Contig sequence
>Contig-U04589-1 (Contig-U04589-1Q) /CSM_Contig/Contig-U04589-1Q.Seq.d
GCGTCCCGCCATTTTTTTAATGGTAAAAATGAGGGGATCATTTAATTTTA
ATTTTCTGAGGCCGAAGAATTCCAATGGAGTATGAAGATGTTCAGTTGGT
TCTATAGTTTTGTTTATAAATAAAAAAAGAGAGAATTTAATTAATTAATT
AAAAATAATAATAATAATAATAATAGTTTACCTTGGTAAGCTTTACTCAA
ATCATGTAGTTTTTGTTTCTTTAGTGGTGACTTTCTTTTGAGGCTAGAGT
TGGATTTTGAATCTTCATCTGACTCCGATTCTGATGGATCTGAATATTCT
TCCTCATTGTCATTTGGGTTTGGTAATTGTGGTTGTGGTGGTGTTATTGT
TGGTATTGTCTGTGCAGTAGATGCAGAAGGGACTTGAACGGTGATTGTGT
GACTTTTTAAATCTGATGAAATTTTCTTTATCCTTTGGGTTAACGCAGTT
TTGGTTCTTTTTTGTTGGAAATTAATATTTAAATTATTGAGAATATCGTC
GGCAACCAAAGAAGGTTTTTTTAATAATTCGCTTTTAATATAATTATCTT
CAGCTGGAGACCAATTTGAAGTTTTGGGCATTCTTTAAATATAAAAATAA
AATTCTTTTTTTAAAAAAAAAAAAAAAAAAAAAAAA

Gap no gap
Contig length 636
Chromosome number (1..6, M) 2
Chromosome length 8467578
Start point 288167
End point 288779
Strand (PLUS/MINUS) PLUS
Number of clones 1
Number of EST 2
Link to clone list U04589
List of clone(s)

est1=SSB694Z,1,637
est2=SSB694F,10,349
Translated Amino Acid sequence
asrhffngknegii*f*fseaeefqwsmkmfswfysfvyk*kkrefn*liknnnnnnnsl
pw*ALLKSCSFCFFSGDFLLRLELDFESSSDSDSDGSEYSSSLSFGFGNCGCGGVIVGIV
CAVDAEGT*tviv*lfksdeiffilwvnavlvlfcwklifkllrissatkegffnnslli
*lssagdqfevlgil*i*k*nsffkkkkkkkk


Translated Amino Acid sequence (All Frames)
Frame A:
asrhffngknegii*f*fseaeefqwsmkmfswfysfvyk*kkrefn*liknnnnnnnsl
pw*ALLKSCSFCFFSGDFLLRLELDFESSSDSDSDGSEYSSSLSFGFGNCGCGGVIVGIV
CAVDAEGT*tviv*lfksdeiffilwvnavlvlfcwklifkllrissatkegffnnslli
*lssagdqfevlgil*i*k*nsffkkkkkkkk


Frame B:
rpaiflmvkmrgsfnfnflrpknsngv*rcsvgsivlfinkkrenlin*lkiiiiiiivy
lgklysnhvvfvslvvtff*g*swilnlhltpilmdlnilphchlglvivvvvvlllvls
vq*mqkgler*lcdflnlmkfslsfgltqfwfffvgn*ylny*eyrrqpkkvfliirf*y
nylqletnlkfwaffkyknkilflkkkkkkk


Frame C:
vppff*w*k*gdhlilif*grripmeyedvqlvl*fcl*ikkeri*lin*k*******ft
lvsftqim*flfl*w*lsfearvgf*ifi*lrf*wi*iffliviwvw*lwlwwcycwycl
csrcrrdlngdcvtf*i**nflyplg*rsfgsflleini*iienivgnqrrff**fafni
iifswrpi*sfghslnikikfff*kkkkkkk


own update 2004. 6.10
Homology vs CSM-cDNA
Query= Contig-U04589-1 (Contig-U04589-1Q)
/CSM_Contig/Contig-U04589-1Q.Seq.d
(636 letters)

Database: CSM
6905 sequences; 5,674,871 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U04589-1 (Contig-U04589-1Q) /CSM_Contig/Conti... 811 0.0
Contig-U11441-1 (Contig-U11441-1Q) /CSM_Contig/Conti... 42 7e-04
Contig-U12034-1 (Contig-U12034-1Q) /CSM_Contig/Conti... 40 0.003
Contig-U11792-1 (Contig-U11792-1Q) /CSM_Contig/Conti... 38 0.011
Contig-U13513-1 (Contig-U13513-1Q) /CSM_Contig/Conti... 36 0.044
Contig-U11866-1 (Contig-U11866-1Q) /CSM_Contig/Conti... 36 0.044
Contig-U10837-1 (Contig-U10837-1Q) /CSM_Contig/Conti... 36 0.044
Contig-U09174-1 (Contig-U09174-1Q) /CSM_Contig/Conti... 36 0.044
Contig-U06459-1 (Contig-U06459-1Q) /CSM_Contig/Conti... 36 0.044
Contig-U01470-1 (Contig-U01470-1Q) /CSM_Contig/Conti... 36 0.044

>Contig-U04589-1 (Contig-U04589-1Q) /CSM_Contig/Contig-U04589-1Q.Seq.d
Length = 636

Score = 811 bits (409), Expect = 0.0
Identities = 423/430 (98%)
Strand = Plus / Plus


Query: 176 gtttaccttggtaagctttactcaaatcatgtagtttttgtttctttagtggtgactttc 235
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 176 gtttaccttggtaagctttactcaaatcatgtagtttttgtttctttagtggtgactttc 235


Query: 236 ttttgaggctagagttggattttgaatcttcatctgactccgattctgatggatctgaat 295
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 236 ttttgaggctagagttggattttgaatcttcatctgactccgattctgatggatctgaat 295


Query: 296 attcttcctcattgtcatttgggtttggtaattgtggttgtggtggtgttattgttggta 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 attcttcctcattgtcatttgggtttggtaattgtggttgtggtggtgttattgttggta 355


Query: 356 ttgtctgtgcagtagatgcagaagggacttgaacggtgattgtgtgactttttaaatctg 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 ttgtctgtgcagtagatgcagaagggacttgaacggtgattgtgtgactttttaaatctg 415


Query: 416 atgaaattttctttatcctttgggttaacgcagttttggttcttttttgttggaaattaa 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 atgaaattttctttatcctttgggttaacgcagttttggttcttttttgttggaaattaa 475


Query: 476 tatttaaattattgagaatatcgtcggcaaccaaagaaggnnnnnnnaataattcgcttt 535
|||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 476 tatttaaattattgagaatatcgtcggcaaccaaagaaggtttttttaataattcgcttt 535


Query: 536 taatataattatcttcagctggagaccaatttgaagttttgggcattctttaaatataaa 595
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 536 taatataattatcttcagctggagaccaatttgaagttttgggcattctttaaatataaa 595


Query: 596 aataaaattc 605
||||||||||
Sbjct: 596 aataaaattc 605


Score = 192 bits (97), Expect = 3e-49
Identities = 97/97 (100%)
Strand = Plus / Plus


Query: 19 aatggtaaaaatgaggggatcatttaattttaattttctgaggccgaagaattccaatgg 78
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19 aatggtaaaaatgaggggatcatttaattttaattttctgaggccgaagaattccaatgg 78


Query: 79 agtatgaagatgttcagttggttctatagttttgttt 115
|||||||||||||||||||||||||||||||||||||
Sbjct: 79 agtatgaagatgttcagttggttctatagttttgttt 115


>Contig-U11441-1 (Contig-U11441-1Q) /CSM_Contig/Contig-U11441-1Q.Seq.d
Length = 550

Score = 42.1 bits (21), Expect = 7e-04
Identities = 24/25 (96%)
Strand = Plus / Minus


Query: 321 tggtaattgtggttgtggtggtgtt 345
||||| |||||||||||||||||||
Sbjct: 364 tggtagttgtggttgtggtggtgtt 340


>Contig-U12034-1 (Contig-U12034-1Q) /CSM_Contig/Contig-U12034-1Q.Seq.d
Length = 1236

Score = 40.1 bits (20), Expect = 0.003
Identities = 23/24 (95%)
Strand = Plus / Minus


Query: 329 gtggttgtggtggtgttattgttg 352
||||||||||||||||| ||||||
Sbjct: 41 gtggttgtggtggtgttgttgttg 18


Database: CSM
Posted date: Jun 9, 2004 7:35 PM
Number of letters in database: 5,674,871
Number of sequences in database: 6905

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 12,306
Number of Sequences: 6905
Number of extensions: 12306
Number of successful extensions: 2208
Number of sequences better than 10.0: 279
length of query: 636
length of database: 5,674,871
effective HSP length: 16
effective length of query: 620
effective length of database: 5,564,391
effective search space: 3449922420
effective search space used: 3449922420
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2009. 6.25
Homology vs DNA
Query= Contig-U04589-1 (Contig-U04589-1Q) /CSM_Contig/Contig-U04589-1Q.Seq.d
(636 letters)

Database: ddbj_A
102,105,510 sequences; 101,790,757,118 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(AU037271) Dictyostelium discoideum slug cDNA, clone SSB694. 674 0.0 3
(AU071512) Dictyostelium discoideum slug cDNA, clone SSB694. 149 1e-64 3
(AC116982) Dictyostelium discoideum chromosome 2 map 3622643... 64 4e-23 3
(AC117081) Dictyostelium discoideum chromosome 2 map 5862124... 38 0.002 5
(AC115599) Dictyostelium discoideum chromosome 2 map 4229098... 34 0.008 6
(AM453065) Vitis vinifera contig VV78X136997.8, whole genome... 42 0.011 4
(EC319042) EMBRYOF081140F11 POSSUM_01-POSSUM-C-EMBRYO-2KB Tr... 52 0.026 1
(ET075785) QM0AAB2DC12RM1 CCER1 Citrus clementina genomic cl... 44 0.052 2
(AC169490) Loxodonta africana clone VMRC15-437G11, WORKING D... 40 0.065 2
(ED154072) AUAC-aai06c01.b1 Ascaris suum whole genome shotgu... 34 0.081 2
(ED269386) AUAC-aal17b02.b1 Ascaris suum whole genome shotgu... 34 0.081 2
(ED064367) AUAC-aac92b10.g1 Ascaris suum whole genome shotgu... 34 0.082 2
(AC116977) Dictyostelium discoideum chromosome 2 map 5515173... 38 0.088 9
(AC141828) Apis mellifera clone CH224-62B7, WORKING DRAFT SE... 50 0.10 1
(DB780437) Apis mellifera head cDNA, RIKEN full-length enric... 50 0.10 1
(BA000011) Thermoplasma volcanium GSS1 DNA, complete genome. 50 0.10 1
(Z82209) Human DNA sequence from clone RP3-428A13 on chromos... 42 0.11 5
(FG284765) 1108770681741 New World Screwworm Egg 9261 ESTs C... 34 0.11 3
(DQ788095) Bombus ruderarius voucher SC047 16S ribosomal RNA... 36 0.13 3
(AC116957) Dictyostelium discoideum chromosome 2 map 1685067... 36 0.17 9
(CU928548) S.lycopersicum DNA sequence from clone SL_MboI-39... 36 0.23 4
(AC116921) Dictyostelium discoideum chromosome 2 map 4624505... 36 0.26 5
(AC021562) Homo sapiens chromosome 12 clone RP11-766H13 map ... 44 0.32 5
(AC005589) Homo sapiens BAC clone RP11-161H12 from 7, comple... 42 0.35 4
(AC148396) Medicago truncatula chromosome 2 clone mth2-17k4,... 46 0.37 5
(AX345418) Sequence 489 from Patent WO0200928. 44 0.41 2
(CU695284) Brassica rapa subsp. pekinensis clone KBrH004B12,... 48 0.41 1
(AC222812) Bos taurus clone CH240-438A7, WORKING DRAFT SEQUE... 48 0.41 1
(CT025765) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 40 0.50 3
(CU638727) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 40 0.50 3
(CR385067) Zebrafish DNA sequence from clone CH211-79A21 in ... 36 0.51 6
(CU467956) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 36 0.55 3
(AM470810) Vitis vinifera contig VV78X019350.5, whole genome... 40 0.58 3
(AP007819) Lotus japonicus genomic DNA, chromosome 1, clone:... 34 0.63 6
(AC145773) Pan troglodytes BAC clone RP43-32M11 from chromos... 42 0.86 4
(EV422745) 210805118 NGP Nasonia giraulti cDNA clone 127G13 ... 42 0.87 2
(AP010593) Lotus japonicus genomic DNA, chromosome 5, clone:... 36 0.88 6
(EJ987134) 1093023019029 Global-Ocean-Sampling_GS-30-02-01-1... 36 1.1 2
(EJ995639) 1093023086037 Global-Ocean-Sampling_GS-30-02-01-1... 36 1.1 2
(AC022025) Homo sapiens chromosome 10 clone RP11-489D8, comp... 34 1.2 6
(AC233422) Solanum tuberosum chromosome 5 clone RH072M12, **... 38 1.3 4
(AE017308) Mycoplasma mobile 163K complete genome. 42 1.3 12
(AC128957) Rattus norvegicus clone CH230-3E24, *** SEQUENCIN... 38 1.3 5
(AM445632) Vitis vinifera contig VV78X271424.14, whole genom... 40 1.4 3
(AC114263) Dictyostelium discoideum chromosome 2 map 215673-... 38 1.5 6
(BV255422) S235P6526FA8.T0 ItalianGreyhound Canis familiaris... 46 1.6 1
(AC205914) Pongo abelii BAC clone CH276-7K14 from chromosome... 46 1.6 1
(AM464858) Vitis vinifera contig VV78X132061.10, whole genom... 46 1.6 1
(BD426631) The Nucleotide Sequence of the Haemophilus influe... 46 1.6 1
(BD426353) The Nucleotide Sequence of the Haemophilus influe... 46 1.6 1
(AX356380) Sequence 14 from Patent WO0181622. 46 1.6 1
(AX345333) Sequence 404 from Patent WO0200928. 46 1.6 1
(AX281149) Sequence 14 from Patent WO0177377. 46 1.6 1
(GC878202) Sequence 193447 from patent US 6812339. 46 1.6 1
(GC701999) Sequence 17244 from patent US 6812339. 46 1.6 1
(AR632719) Sequence 1 from patent US 6846651. 46 1.6 1
(AR453037) Sequence 14 from patent US 6677731. 46 1.6 1
(AR274513) Sequence 1 from patent US 6506581. 46 1.6 1
(CU138569) Pig DNA sequence from clone CH242-265M12 on chrom... 46 1.6 1
(AC073363) Homo sapiens 3 BAC RP11-293N1 (Roswell Park Cance... 46 1.6 1
(AC231706) Choloepus hoffmanni clone CH281-531D21, WORKING D... 46 1.6 1
(ER459385) 1092963882028 Global-Ocean-Sampling_GS-35-01-01-1... 46 1.6 1
(ED381646) AUAC-aad40g04.b1 Ascaris suum whole genome shotgu... 46 1.6 1
(EB497386) 1099435212776 12-DrosW-norm-1P5Kb Drosophila will... 46 1.6 1
(BW984682) Sus scrofa mRNA, clone:ITT010098A11, 5' end, expr... 46 1.6 1
(FK885961) EST_crog_evp_908628 crog_evp Caligus rogercressey... 46 1.6 1
(L42023) Haemophilus influenzae Rd KW20, complete genome. 46 1.6 1
(CZ542973) SRAA-aad47c02.b1 Strongyloides ratti whole genome... 34 1.7 3
(AC116305) Dictyostelium discoideum chromosome 2 map 1005175... 34 1.8 10
(AC216474) Populus trichocarpa clone POP081-J22, complete se... 42 1.9 5
(AC206796) Macaca mulatta chromosome UNKNOWN clone CH250-390... 40 2.0 3
(AP009358) Solanum lycopersicum genomic DNA, chromosome 8, c... 36 2.1 5
(CU942398) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 34 2.1 7
(AC092049) Homo sapiens chromosome 3 clone RP11-245J9, WORKI... 38 2.2 5
(AM461053) Vitis vinifera contig VV78X080139.10, whole genom... 32 2.2 5
(X95275) Plasmodium falciparum complete gene map of plastid-... 34 2.2 4
(AC208877) Homo sapiens FOSMID clone ABC12-47944000C19 from ... 42 2.2 2
(AC171601) Bos taurus clone CH240-273N5, WORKING DRAFT SEQUE... 42 2.3 3
(AC021346) Homo sapiens clone RP11-24K15, WORKING DRAFT SEQU... 32 2.4 8
(DX536247) GH_MBb0074H21f GH_MBb Gossypium hirsutum genomic ... 34 2.5 3
(AC074148) Mus musculus clone RP23-112N4, WORKING DRAFT SEQU... 44 2.7 3
(BZ023036) oeh07g02.b1 B.oleracea002 Brassica oleracea genom... 40 3.0 2
(AJ010592) Guillardia theta DNA for complete sequence of nuc... 38 3.0 6
(AG428076) Mus musculus molossinus DNA, clone:MSMg01-302B03.... 42 3.0 2
(BX005235) Zebrafish DNA sequence from clone DKEY-68L7 in li... 38 3.1 5
(AG582309) Mus musculus molossinus DNA, clone:MSMg01-508G03.... 42 3.1 2
(EU290604) Heterodera glycines clone BAC L19-1, *** SEQUENCI... 34 3.1 5
(AG330556) Mus musculus molossinus DNA, clone:MSMg01-120B16.... 42 3.1 2
(BX284752) Neurospora crassa DNA linkage group II BAC contig... 34 3.3 2
(DQ642846) Plasmodium falciparum HB3 apicoplast, complete ge... 34 3.3 4
(BS000588) Pan troglodytes chromosome Y clone:PTB-443K18. 36 3.4 5
(AC124344) Mus musculus BAC clone RP24-448A7 from 3, complet... 36 3.4 5
(CU861995) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 36 3.7 6
(FB571052) Sequence 55 from Patent WO2007116417. 42 3.9 2
(AJ277643) Nicotiana alata 48A gene. 34 3.9 2
(EI888387) CAH1-72L21TR CAA1Ba Cicer arietinum genomic clone... 32 3.9 3
(CU856605) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 36 4.0 5
(EJ685073) 1092955169919 Global-Ocean-Sampling_GS-30-02-01-1... 34 4.0 3
(AC117076) Dictyostelium discoideum chromosome 2 map 3323568... 34 4.0 7
(AP007951) Lotus japonicus genomic DNA, chromosome 1, clone:... 42 4.1 2
(FH560750) CHO_OF4473xb23f1.ab1 CHO_OF4 Nicotiana tabacum ge... 34 4.2 2
(CZ543137) SRAA-aad48c02.b1 Strongyloides ratti whole genome... 34 4.3 3
(AU061502) Dictyostelium discoideum slug cDNA, clone SLE471. 34 4.3 2
(AU035001) Dictyostelium discoideum slug cDNA, clone SLE471. 34 4.3 2
(EJ676645) 1092955088516 Global-Ocean-Sampling_GS-30-02-01-1... 34 4.3 3
(BJ419789) Dictyostelium discoideum cDNA clone:ddv37p04, 5' ... 34 4.4 2
(BJ438537) Dictyostelium discoideum cDNA clone:ddv37p04, 3' ... 34 4.4 2
(AC006884) Caenorhabditis elegans clone Y57E12, *** SEQUENCI... 34 4.4 8
(EC390255) B09_B09nb3e18_pDNR-f_449575 Myzus persicae, tobac... 34 4.5 2
(AC117072) Dictyostelium discoideum chromosome 2 map 3879572... 36 4.6 7
(AX344557) Sequence 8 from Patent WO0200932. 36 4.6 10
(CU929186) Zebrafish DNA sequence from clone CH73-10I7 in li... 40 5.0 5
(BX942825) Zebrafish DNA sequence from clone CH211-61N17 in ... 38 5.0 4
(BX511308) Zebrafish DNA sequence from clone DKEYP-118E10 in... 36 5.4 5
(AC155650) Mus musculus 6 BAC RP24-151E20 (Roswell Park Canc... 36 5.4 4
(CU469517) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 38 5.5 6
(AC149484) Populus trichocarpa clone Pop1-69M19, complete se... 34 5.7 4
(AJ296093) Candida tropicalis hsr1 gene for heat-shock relat... 44 5.8 2
(AF466146) Melipona bicolor mitochondrial genome, partial se... 34 6.2 4
(EV417907) 210768459 NGP Nasonia giraulti cDNA clone 128G7 5... 38 6.4 2
(AC233210) Medicago truncatula chromosome 7 clone mth2-175f5... 40 6.4 2
(BX927289) Zebrafish DNA sequence from clone DKEY-119F1 in l... 44 6.4 1
(BC085323) Mus musculus transmembrane protease, serine 13, m... 44 6.4 1
(BC042878) Mus musculus transmembrane protease, serine 13, m... 44 6.4 1
(BC010843) Mus musculus transmembrane protease, serine 13, m... 44 6.4 1
(AL669938) Mouse DNA sequence from clone RP23-264N2 on chrom... 44 6.4 1
(AC162176) Mus musculus BAC clone RP24-446P15 from chromosom... 44 6.4 1
(AC124497) Mus musculus BAC clone RP23-480E8 from chromosome... 44 6.4 1
(AC123054) Mus musculus BAC clone RP24-220N11 from 5, comple... 44 6.4 1
(AC122218) Mus musculus BAC clone RP23-118J7 from chromosome... 44 6.4 1
(AC119237) Mus musculus chromosome 9, clone RP24-228P8, comp... 44 6.4 1
(AC087840) Mus musculus strain C57BL/6J chromosome 16 clone ... 44 6.4 1
(AM445153) Vitis vinifera contig VV78X047964.6, whole genome... 44 6.4 1
(AM442017) Vitis vinifera contig VV78X125236.4, whole genome... 44 6.4 1
(AM428705) Vitis vinifera contig VV78X262522.2, whole genome... 44 6.4 1
(AC216944) Populus trichocarpa clone POP072-L18, complete se... 44 6.4 1
(AC208746) Populus trichocarpa clone JGIACSB269-H05, complet... 44 6.4 1
(AC189519) Brassica rapa subsp. pekinensis clone KBrB091G04,... 44 6.4 1
(AC189450) Brassica rapa subsp. pekinensis clone KBrB071M18,... 44 6.4 1
(AC116920) Dictyostelium discoideum chromosome 2 map 4415041... 44 6.4 1
(AL353717) Human DNA sequence from clone RP11-562M8 on chrom... 44 6.4 1
(AC099340) Homo sapiens BAC clone RP11-214O14 from 4, comple... 44 6.4 1
(AC025260) Homo sapiens 12 BAC RP11-356O22 (Roswell Park Can... 44 6.4 1
(AC153255) Bos taurus clone CH240-23F19, WORKING DRAFT SEQUE... 44 6.4 1
(AC130151) Rattus norvegicus clone CH230-42L16, *** SEQUENCI... 44 6.4 1
(AC118161) Rattus norvegicus clone CH230-296C3, WORKING DRAF... 44 6.4 1
(AC097940) Rattus norvegicus clone CH230-143D15, WORKING DRA... 44 6.4 1
(AC090682) Homo sapiens chromosome 12 clone RP11-766H13, WOR... 44 6.4 1
(CT868710) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 6.4 1
(BX649343) Human DNA sequence *** SEQUENCING IN PROGRESS ***... 44 6.4 1
(AC223904) Bos taurus clone CH240-454I11, WORKING DRAFT SEQU... 44 6.4 1
(AC189191) Brassica rapa subsp. pekinensis clone KBrB002K01,... 44 6.4 1
(AC186701) Microcebus murinus clone CH257-514M21, WORKING DR... 44 6.4 1
(AC175737) Bos taurus clone CH240-382H19, WORKING DRAFT SEQU... 44 6.4 1
(AC023054) Homo sapiens chromosome 12 clone RP11-1027H21, WO... 44 6.4 1
(FI220370) CccaBa065-K21TV CccABa Cajanus cajan genomic clon... 44 6.4 1
(EK244021) 1095460245544 Global-Ocean-Sampling_GS-31-01-01-1... 44 6.4 1
(EK161951) 1095458034781 Global-Ocean-Sampling_GS-31-01-01-1... 44 6.4 1
(EK056713) 1092960031035 Global-Ocean-Sampling_GS-31-01-01-1... 44 6.4 1
(EJ213041) 1092351001512 Global-Ocean-Sampling_GS-27-01-01-1... 44 6.4 1
(EI909851) VUH2-44H14TV VUUBBa (VUH2) Vigna unguiculata geno... 44 6.4 1
(EI884918) CAH1-51H7TV CAA1Ba Cicer arietinum genomic clone ... 44 6.4 1
(ED247750) AUAC-aal08b05.b1 Ascaris suum whole genome shotgu... 44 6.4 1
(DX995353) CHORI103-18E12.TV CHORI103 Schistosoma mansoni ge... 44 6.4 1
(DX540261) GH_MBb0077J14r GH_MBb Gossypium hirsutum genomic ... 44 6.4 1
(DX527259) GH_MBb0078H05r GH_MBb Gossypium hirsutum genomic ... 44 6.4 1
(DU895557) 423178 Tomato HindIII BAC Library Solanum lycoper... 44 6.4 1
(DU083554) 279847 Tomato HindIII BAC Library Solanum lycoper... 44 6.4 1
(CE276717) tigr-gss-dog-17000333670762 Dog Library Canis lup... 44 6.4 1
(BZ604100) WHACC54TR Human MCF7 breast cancer cell line libr... 44 6.4 1
(AG365775) Mus musculus molossinus DNA, clone:MSMg01-168K17.... 44 6.4 1
(DW662898) CNB317-B03.y1d-s SHGC-CNB2 Gasterosteus aculeatus... 44 6.4 1
(CT859343) Oryza sativa Indica Group EST sequence:OSIGCRA122... 44 6.4 1
(CK232511) ILLUMIGEN_MCQ_4185 Katze_MMPL2 Macaca mulatta cDN... 44 6.4 1
(BI681467) 460868 MARC 1BOV Bos taurus cDNA 5', mRNA sequence. 44 6.4 1
(BI554666) 603236618F1 NCI_CGAP_Mam3 Mus musculus cDNA clone... 44 6.4 1
(BF142526) 601789221F1 NCI_CGAP_Lu30 Mus musculus cDNA clone... 44 6.4 1
(BB872973) Mus musculus 15 days embryo brain cDNA, RIKEN ful... 44 6.4 1
(AW988850) uf21c07.y1 Soares_mammary_gland_NMLMG Mus musculu... 44 6.4 1
(AW484292) 59893 MARC 4BOV Bos taurus cDNA 5', mRNA sequence. 44 6.4 1
(CP000993) Borrelia recurrentis A1, complete genome. 44 6.4 1
(CP000976) Borrelia duttonii Ly, complete genome. 44 6.4 1
(CP000745) Methanococcus maripaludis C7, complete genome. 44 6.4 1
(BX950229) Methanococcus maripaludis strain S2, complete seq... 44 6.4 1
(AE013218) Buchnera aphidicola str. Sg (Schizaphis graminum)... 44 6.4 1
(CT027761) Zebrafish DNA sequence from clone DKEY-56E12 in l... 42 6.5 2
(AC210859) Nomascus leucogenys BAC clone CH271-40H12 from ch... 36 6.5 6
(EV421198) 210796340 NGP Nasonia giraulti cDNA clone 132O11 ... 38 6.5 2
(EL927030) NY4Tr1_5_C03.b1_A039 NY4 trophonts (NY4Tr1) Ichth... 34 6.5 2
(EC390655) F02_F02nb1o4_pDNR-f_449043 Myzus persicae, tobacc... 34 6.6 2
(AC092289) Homo sapiens chromosome 16 clone CTD-2305H1, comp... 36 6.7 7
(AC093155) Homo sapiens chromosome 1 clone RP11-384B12, comp... 42 6.7 5
(CR931734) Medicago truncatula chromosome 5 clone mth2-62m24... 36 6.8 3
(AC118973) Rattus norvegicus clone CH230-39G5, *** SEQUENCIN... 38 6.8 5
(AL596179) Human DNA sequence from clone RP11-49A12 on chrom... 38 7.0 6
(AC140546) Medicago truncatula chromosome 8 clone mth2-35l19... 40 7.1 4
(AP007323) Lotus japonicus genomic DNA, chromosome 1, clone:... 32 7.2 5
(AC008526) Homo sapiens chromosome 5 clone CTC-470C15, compl... 34 7.4 7
(EV423817) 210920138 NGP Nasonia giraulti cDNA clone 150A13 ... 38 7.4 2
(CN732133) 24RDBNH_UP_026_H02_12JAN2004_002 Brassica napus 2... 36 7.4 2
(AP002889) Homo sapiens genomic DNA, chromosome 11q, clone:R... 34 7.5 6
(GC699478) Sequence 14723 from patent US 6812339. 38 7.7 2
(AC200567) Trichinella spiralis BAC clone TS195-14H12 from c... 42 7.8 3
(BH734660) BOMDK20TF BO_2_3_KB Brassica oleracea genomic clo... 32 7.9 3
(AC022445) Homo sapiens chromosome 5 clone RP11-489L13, comp... 38 7.9 4
(AM146106) Oryzias latipes EST, clone McF0031O13-MGRbd1. 34 8.0 3
(AP009254) Lotus japonicus genomic DNA, chromosome 1, clone:... 40 8.2 3
(DQ788007) Bombus festivus voucher SC032 16S ribosomal RNA g... 38 8.2 2
(DQ788097) Bombus rufocinctus voucher SC186 16S ribosomal RN... 38 8.2 2
(DQ787964) Bombus apollineus voucher SC084 16S ribosomal RNA... 38 8.3 2
(DQ788064) Bombus monticola voucher SC176 16S ribosomal RNA ... 38 8.3 2
(AC209036) Populus trichocarpa clone POP004-K05, complete se... 32 8.3 7
(L06178) Apis mellifera ligustica complete mitochondrial gen... 34 8.4 4
(CP000364) Drosophila melanogaster genomic scaffold 21100002... 40 8.4 3
(CT027683) Zebrafish DNA sequence *** SEQUENCING CANCELLED *... 38 8.4 6
(AC203900) Zea mays chromosome 3 clone CH201-15G19; ZMMBBc00... 36 8.6 3
(AM451719) Vitis vinifera contig VV78X012288.10, whole genom... 38 8.7 3
(AM433448) Vitis vinifera contig VV78X042123.5, whole genome... 38 8.7 2
(ES495745) BIG_AF_3561 Brine Shrimp Adult (20 days after hat... 40 8.8 2
(AC224189) Bos taurus clone CH240-447I3, WORKING DRAFT SEQUE... 42 8.9 4
(FG497748) 030415KAWC009501HT (KAWC) Actinidia chinensis - a... 36 8.9 2
(AC094162) Rattus norvegicus clone CH230-2O20, WORKING DRAFT... 40 9.0 6
(ES966686) BNZB_UP_175_D10_12MAR2006_074 Brassica napus BNZB... 36 9.1 2
(DU202360) 1098553720384 CHORI-243 Ovis aries genomic clone ... 36 9.1 2
(EV419684) 210784376 NGP Nasonia giraulti cDNA clone 134E11 ... 38 9.1 2
(AC214214) Populus trichocarpa clone POP028-A01, complete se... 42 9.2 6
(AM480093) Vitis vinifera contig VV78X117694.6, whole genome... 38 9.2 3
(AP007157) Aspergillus oryzae RIB40 genomic DNA, SC023. 30 9.4 2
(AM483869) Vitis vinifera contig VV78X073995.10, whole genom... 40 9.4 2
(ET091342) QM0AAA16CH10FM1 CCL1 Citrus clementina genomic cl... 40 9.4 2
(AM428099) Vitis vinifera contig VV78X011365.10, whole genom... 42 9.5 2
(CZ542130) SRAA-aad42c09.b1 Strongyloides ratti whole genome... 36 9.5 2
(AC189470) Brassica rapa subsp. pekinensis clone KBrB078H21,... 34 9.6 5
(AF288092) Naegleria gruberi mitochondrial DNA, complete gen... 32 9.7 5
(AC187470) Gossypium hirsutum chromosome UNKNOWN clone ZMMBB... 32 9.7 7
(ED229344) AUAC-aac04f04.g1 Ascaris suum whole genome shotgu... 36 9.8 2
(AC116986) Dictyostelium discoideum chromosome 2 map 2234041... 32 9.8 9
(EV415297) 210745423 NGP Nasonia giraulti cDNA clone 136I17 ... 38 9.8 2
(EV422013) 210804054 NGP Nasonia giraulti cDNA clone 141E15 ... 38 9.9 2
(CR848003) Zebrafish DNA sequence from clone DKEY-180K21 in ... 38 10.0 3

>(AU037271) Dictyostelium discoideum slug cDNA, clone SSB694.
Length = 637

Score = 674 bits (340), Expect(3) = 0.0
Identities = 340/340 (100%)
Strand = Plus / Plus


Query: 176 gtttaccttggtaagctttactcaaatcatgtagtttttgtttctttagtggtgactttc 235
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 176 gtttaccttggtaagctttactcaaatcatgtagtttttgtttctttagtggtgactttc 235


Query: 236 ttttgaggctagagttggattttgaatcttcatctgactccgattctgatggatctgaat 295
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 236 ttttgaggctagagttggattttgaatcttcatctgactccgattctgatggatctgaat 295


Query: 296 attcttcctcattgtcatttgggtttggtaattgtggttgtggtggtgttattgttggta 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 attcttcctcattgtcatttgggtttggtaattgtggttgtggtggtgttattgttggta 355


Query: 356 ttgtctgtgcagtagatgcagaagggacttgaacggtgattgtgtgactttttaaatctg 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 ttgtctgtgcagtagatgcagaagggacttgaacggtgattgtgtgactttttaaatctg 415


Query: 416 atgaaattttctttatcctttgggttaacgcagttttggttcttttttgttggaaattaa 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 atgaaattttctttatcctttgggttaacgcagttttggttcttttttgttggaaattaa 475


Query: 476 tatttaaattattgagaatatcgtcggcaaccaaagaagg 515
||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 tatttaaattattgagaatatcgtcggcaaccaaagaagg 515

Score = 192 bits (97), Expect(3) = 0.0
Identities = 97/97 (100%)
Strand = Plus / Plus


Query: 19 aatggtaaaaatgaggggatcatttaattttaattttctgaggccgaagaattccaatgg 78
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19 aatggtaaaaatgaggggatcatttaattttaattttctgaggccgaagaattccaatgg 78


Query: 79 agtatgaagatgttcagttggttctatagttttgttt 115
|||||||||||||||||||||||||||||||||||||
Sbjct: 79 agtatgaagatgttcagttggttctatagttttgttt 115

Score = 178 bits (90), Expect(3) = 0.0
Identities = 90/90 (100%)
Strand = Plus / Plus


Query: 523 aataattcgcttttaatataattatcttcagctggagaccaatttgaagttttgggcatt 582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 aataattcgcttttaatataattatcttcagctggagaccaatttgaagttttgggcatt 582


Query: 583 ctttaaatataaaaataaaattcttttttt 612
||||||||||||||||||||||||||||||
Sbjct: 583 ctttaaatataaaaataaaattcttttttt 612

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 102105510
Number of Hits to DB: 841,842,854
Number of extensions: 59086696
Number of successful extensions: 5762767
Number of sequences better than 10.0: 244
Length of query: 636
Length of database: 101,790,757,118
Length adjustment: 24
Effective length of query: 612
Effective length of database: 99,340,224,878
Effective search space: 60796217625336
Effective search space used: 60796217625336
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)

protein update 2009. 7.30
Homology vs Protein
Query= Contig-U04589-1 (Contig-U04589-1Q) /CSM_Contig/Contig-U04589-1Q.Seq.d
(636 letters)

Database: nrp_A
3,268,448 sequences; 1,061,185,681 total letters

Searching..................................................done

***** No hits found ******

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3268448
Number of Hits to DB: 741,784,605
Number of extensions: 10489064
Number of successful extensions: 20260
Number of sequences better than 10.0: 0
Number of HSP's gapped: 20259
Number of HSP's successfully gapped: 0
Length of query: 212
Length of database: 1,061,185,681
Length adjustment: 123
Effective length of query: 89
Effective length of database: 659,166,577
Effective search space: 58665825353
Effective search space used: 58665825353
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 31 (16.5 bits)

PSORT

psg: 0.93 gvh: 0.53 alm: 0.30 top: 0.80 tms: 0.07 mit: 0.25 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 1.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

48.0 %: nuclear
28.0 %: cytoplasmic
8.0 %: Golgi
8.0 %: mitochondrial
4.0 %: vesicles of secretory system
4.0 %: endoplasmic reticulum

>> prediction for Contig-U04589-1 is nuc

VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 1
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0