>Contig-U04586-1 (Contig-U04586-1Q) /CSM_Contig/Contig-U04586-1Q.Seq.d
TTTTTTTTTTGAATTATTATATAAAATTTTTAAAATGTTAAAGAAATTTT
TAATTTCAAGTATTGTTAAACCAACATTTCAAAGTAGAATTATAGCATCA
ACAACATTAAATGGTGGTGCAGGTAGAGCAACATTTTGTTCAGTTAATAG
TATTAATCCAAATCCAACAGCAAGTCAAATTAAAGTTGATCAAGAAGATT
TAGAAGTTGGTGAACATCTTGTTATTGATGATCCAAATCAACAACATATT
AAATCATTTTTAAATGGTGTTGAATTTAATGGTAAATCAGTAAACATCTA
TAGACCATCAAGAAATACAATGCAAACTGGTACACTTCGTACAAAGAAAT
GGGTCATTGAATTACCTTTTAATCCAAAATGGAATGATCGTTTAATGGGT
TGGTGGGCTTCAAAAGATACTCTTAATCAATTAAATTTAAGATTTAATTC
TGAAACTGATGCTGTTGCATATTGTAAAGAAATTGGTTTAAATTATAATA
TTGTCGAAGAAGATGTCACATTAAGAAAGAAGAAGAAATATGGTCACAGA
TTCAGATATAGAGGTGATTTAGTAGGTGAAAAAGAAAGAGAAGTTGGTAT
TAATTAAAAATGTTTACAACACTTTTAAAAATTTAATAATATAATAATAT
AATAAATAATAATAAATAATAATATTGTGGTAGATTGGAGCCATTATTAT
TATTTTCAAAGAAAAAAAAAAAAAAAAAAAAAAAAAGTAAAATAAAAAGT
AATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

est1=SSJ810Z,1,643
est2=VSJ368E,25,690
est3=VSD575Z,72,494
est4=SSF663Z,146,712
est5=SSB657Z,161,720
est6=SSJ553Z,223,794

FFFELLYKIFKMLKKFLISSIVKPTFQSRIIASTTLNGGAGRATFCSVNSINPNPTASQI
KVDQEDLEVGEHLVIDDPNQQHIKSFLNGVEFNGKSVNIYRPSRNTMQTGTLRTKKWVIE
LPFNPKWNDRLMGWWASKDTLNQLNLRFNSETDAVAYCKEIGLNYNIVEEDVTLRKKKKY
GHRFRYRGDLVGEKEREVGIN*kclqhf*kfnniii**iiinnnivvdwshyyyfqrkkk
kkkkkvk*kvikkkkkkkkkkkk

Frame A:
fff*iii*nf*nvkeifnfkyc*tnisk*nysinnikwwcr*snilfs**y*sksnsksn
*s*srrfrsw*tscy**skstty*iifkwc*i*w*iskhl*tikkynanwytsykemgh*
itf*skme*sfnglvgfkrys*sikfki*f*n*cccil*rnwfkl*ycrrrchikkeeei
wsqiqi*r*fsr*krkrswy*lkmfttllki**ynniinnnk**ycgrleplllfskkkk
kkkkkskiksnkkkkkkkkkkkkk


Frame B:
FFFELLYKIFKMLKKFLISSIVKPTFQSRIIASTTLNGGAGRATFCSVNSINPNPTASQI
KVDQEDLEVGEHLVIDDPNQQHIKSFLNGVEFNGKSVNIYRPSRNTMQTGTLRTKKWVIE
LPFNPKWNDRLMGWWASKDTLNQLNLRFNSETDAVAYCKEIGLNYNIVEEDVTLRKKKKY
GHRFRYRGDLVGEKEREVGIN*kclqhf*kfnniii**iiinnnivvdwshyyyfqrkkk
kkkkkvk*kvikkkkkkkkkkkk


Frame C:
fflnyyikflkc*rnf*fqvllnqhfkvel*hqqh*mvvqveqhfvqlivliqiqqqvkl
klikki*klvnilllmiqinnilnhf*mvlnlmvnq*tsidhqeiqcklvhfvqrngsln
ylliqngmiv*wvgglqkillin*i*dlilklmllhivkklv*iiilskkmsh*errrnm
vtdsdievi**vkkkeklvliknvyntfknlii**ynk***iiilw*igaiiiifkekkk
kkkkk*nkk**kkkkkkkkkkkk

Query= Contig-U04586-1 (Contig-U04586-1Q)
/CSM_Contig/Contig-U04586-1Q.Seq.d
         (792 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U04586-1 (Contig-U04586-1Q) /CSM_Contig/Conti...  1235  0.0
Contig-U12375-1 (Contig-U12375-1Q) /CSM_Contig/Conti...    38  0.014
Contig-U12281-1 (Contig-U12281-1Q) /CSM_Contig/Conti...    38  0.014
Contig-U11429-1 (Contig-U11429-1Q) /CSM_Contig/Conti...    38  0.014
Contig-U07394-1 (Contig-U07394-1Q) /CSM_Contig/Conti...    38  0.014
Contig-U14675-1 (Contig-U14675-1Q) /CSM_Contig/Conti...    36  0.056
Contig-U14080-1 (Contig-U14080-1Q) /CSM_Contig/Conti...    36  0.056
Contig-U13423-1 (Contig-U13423-1Q) /CSM_Contig/Conti...    36  0.056
Contig-U09499-1 (Contig-U09499-1Q) /CSM_Contig/Conti...    36  0.056
Contig-U09340-1 (Contig-U09340-1Q) /CSM_Contig/Conti...    36  0.056

>Contig-U04586-1 (Contig-U04586-1Q) /CSM_Contig/Contig-U04586-1Q.Seq.d
          Length = 792

 Score = 1235 bits (623), Expect = 0.0
 Identities = 623/623 (100%)
 Strand = Plus / Plus

                                                                       
Query: 11  gaattattatataaaatttttaaaatgttaaagaaatttttaatttcaagtattgttaaa 70
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11  gaattattatataaaatttttaaaatgttaaagaaatttttaatttcaagtattgttaaa 70

                                                                       
Query: 71  ccaacatttcaaagtagaattatagcatcaacaacattaaatggtggtgcaggtagagca 130
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71  ccaacatttcaaagtagaattatagcatcaacaacattaaatggtggtgcaggtagagca 130

                                                                       
Query: 131 acattttgttcagttaatagtattaatccaaatccaacagcaagtcaaattaaagttgat 190
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131 acattttgttcagttaatagtattaatccaaatccaacagcaagtcaaattaaagttgat 190

                                                                       
Query: 191 caagaagatttagaagttggtgaacatcttgttattgatgatccaaatcaacaacatatt 250
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 191 caagaagatttagaagttggtgaacatcttgttattgatgatccaaatcaacaacatatt 250

                                                                       
Query: 251 aaatcatttttaaatggtgttgaatttaatggtaaatcagtaaacatctatagaccatca 310
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 aaatcatttttaaatggtgttgaatttaatggtaaatcagtaaacatctatagaccatca 310

                                                                       
Query: 311 agaaatacaatgcaaactggtacacttcgtacaaagaaatgggtcattgaattacctttt 370
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 agaaatacaatgcaaactggtacacttcgtacaaagaaatgggtcattgaattacctttt 370

                                                                       
Query: 371 aatccaaaatggaatgatcgtttaatgggttggtgggcttcaaaagatactcttaatcaa 430
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 aatccaaaatggaatgatcgtttaatgggttggtgggcttcaaaagatactcttaatcaa 430

                                                                       
Query: 431 ttaaatttaagatttaattctgaaactgatgctgttgcatattgtaaagaaattggttta 490
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 ttaaatttaagatttaattctgaaactgatgctgttgcatattgtaaagaaattggttta 490

                                                                       
Query: 491 aattataatattgtcgaagaagatgtcacattaagaaagaagaagaaatatggtcacaga 550
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 aattataatattgtcgaagaagatgtcacattaagaaagaagaagaaatatggtcacaga 550

                                                                       
Query: 551 ttcagatatagaggtgatttagtaggtgaaaaagaaagagaagttggtattaattaaaaa 610
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 ttcagatatagaggtgatttagtaggtgaaaaagaaagagaagttggtattaattaaaaa 610

                                  
Query: 611 tgtttacaacacttttaaaaatt 633
           |||||||||||||||||||||||
Sbjct: 611 tgtttacaacacttttaaaaatt 633


 Score = 73.8 bits (37), Expect = 3e-13
 Identities = 37/37 (100%)
 Strand = Plus / Plus

                                                
Query: 675 ttgtggtagattggagccattattattattttcaaag 711
           |||||||||||||||||||||||||||||||||||||
Sbjct: 675 ttgtggtagattggagccattattattattttcaaag 711


>Contig-U12375-1 (Contig-U12375-1Q) /CSM_Contig/Contig-U12375-1Q.Seq.d
          Length = 1431

 Score = 38.2 bits (19), Expect = 0.014
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 692  cattattattattttcaaa 710
            |||||||||||||||||||
Sbjct: 1052 cattattattattttcaaa 1034


>Contig-U12281-1 (Contig-U12281-1Q) /CSM_Contig/Contig-U12281-1Q.Seq.d
          Length = 1381

 Score = 38.2 bits (19), Expect = 0.014
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 40  aaagaaatttttaatttca 58
           |||||||||||||||||||
Sbjct: 517 aaagaaatttttaatttca 499


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 29,021
Number of Sequences: 6905
Number of extensions: 29021
Number of successful extensions: 3864
Number of sequences better than 10.0: 345
length of query: 792
length of database: 5,674,871
effective HSP length: 16
effective length of query: 776
effective length of database: 5,564,391
effective search space: 4317967416
effective search space used: 4317967416
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)

Query= Contig-U04586-1 (Contig-U04586-1Q) /CSM_Contig/Contig-U04586-1Q.Seq.d
         (792 letters)

Database: ddbj_A
           102,105,510 sequences; 101,790,757,118 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(C91199) Dictyostelium discoideum slug cDNA, clone SSJ810.       1144   0.0    1
(AC116100) Dictyostelium discoideum chromosome 2 map 6163571...   854   0.0    3
(AU269818) Dictyostelium discoideum vegetative cDNA clone:VS...  1043   0.0    1
(AU269819) Dictyostelium discoideum vegetative cDNA clone:VS...  1031   0.0    1
(C92900) Dictyostelium discoideum slug cDNA, clone SSF663.        946   0.0    2
(AU037249) Dictyostelium discoideum slug cDNA, clone SSB657.      902   0.0    2
(C91002) Dictyostelium discoideum slug cDNA, clone SSJ553.        751   0.0    2
(AU264267) Dictyostelium discoideum vegetative cDNA clone:VS...   398   0.0    3
(AC116960) Dictyostelium discoideum chromosome 2 map complem...    36   8e-04  8
(CP000123) Mycoplasma capricolum subsp. capricolum ATCC 2734...    36   0.009  14
(CW307651) 104_795_11468250_116_35729_067 Sorghum methylatio...    38   0.027  2
(CW307652) 104_795_11468250_148_35737_067 Sorghum methylatio...    38   0.027  2
(CW133857) 104_517_11116990_148_34815_083 Sorghum methylatio...    38   0.027  2
(CW290535) 104_769_11413062_116_35554_017 Sorghum methylatio...    38   0.027  2
(CP000111) Prochlorococcus marinus str. MIT 9312, complete g...    38   0.061  18
(DN314152) PL06017B1C05 cDNA from juvenile hermaphodites Sch...    36   0.10   2
(DY271340) KN0AAP9YK12FM1 Fruit-TF Citrus clementina cDNA 5'...    48   0.52   1
(FC927975) KN0AAP9YK12FM1 TF Citrus clementina cDNA clone KN...    48   0.52   1
(EY788861) CR05-C3-700-112-A06-CT.F Mandarin fruit, developm...    48   0.52   1
(EY697450) CS00-C3-700-060-D07-CT.F Sweet orange fruit, deve...    48   0.52   1
(EY682886) CS00-C1-650-037-G02-CT.F Sweet orange leaf, young...    48   0.52   1
(AC178143) Strongylocentrotus purpuratus clone R3-3078N5, WO...    34   0.59   6
(AM465612) Vitis vinifera, whole genome shotgun sequence, co...    36   0.71   5
(AP007915) Lotus japonicus genomic DNA, chromosome 1, clone:...    34   1.1    2
(ED739906) GM_WBb0100O17.f GM_WBb Glycine max genomic clone ...    32   1.4    2
(EJ519679) 1092955129919 Global-Ocean-Sampling_GS-29-01-01-1...    42   1.5    2
(CP000233) Lactobacillus salivarius UCC118, complete genome.       38   1.7    14
(BX293980) Mycoplasma mycoides subsp. mycoides SC str. PG1, ...    36   2.0    17
(AY100442) Livilla caprifuga cytochrome oxidase subunit I (C...    46   2.0    1
(AC090939) Homo sapiens chromosome 3 clone RP11-127I14 map 3...    46   2.0    1
(EJ989599) 1093023038404 Global-Ocean-Sampling_GS-30-02-01-1...    46   2.0    1
(EJ982236) 1093022162670 Global-Ocean-Sampling_GS-30-02-01-1...    46   2.0    1
(EJ425554) 1093012270522 Global-Ocean-Sampling_GS-28-01-01-1...    46   2.0    1
(EJ347254) 1092963556669 Global-Ocean-Sampling_GS-28-01-01-1...    46   2.0    1
(EJ325215) 1092405865484 Global-Ocean-Sampling_GS-28-01-01-1...    46   2.0    1
(DE168130) Bombyx mori genomic DNA, Fosmid clone:RO0315-L18_F.     46   2.0    1
(CK556292) rswla0_022425.y1 swl Bombyx mori cDNA, mRNA seque...    46   2.0    1
(EW999157) BGBV-aae10a12.g1 Snail_EST_pSMART Biomphalaria gl...    46   2.0    1
(ES483094) BGBV-aac73b08.b1 Snail_EST_pSMART Biomphalaria gl...    46   2.0    1
(AG332854) Mus musculus molossinus DNA, clone:MSMg01-123C21....    38   2.3    2
(FB571359) Sequence 226 from Patent EP1865317.                     36   2.3    9
(CS468878) Sequence 69 from Patent EP1748080.                      34   2.5    8
(CS468877) Sequence 68 from Patent EP1748080.                      34   2.5    8
(CS419355) Sequence 69 from Patent WO2006094836.                   34   2.5    8
(CS419354) Sequence 68 from Patent WO2006094836.                   34   2.5    8
(AE014820) Plasmodium falciparum 3D7 chromosome 14 section 5...    30   2.9    10
(BQ451403) PfESToaa98f12.y1 Plasmodium falciparum 3D7 asexua...    36   3.3    2
(AC176477) Strongylocentrotus purpuratus clone R3-3070K2, WO...    32   3.4    5
(AC115604) Dictyostelium discoideum chromosome 2 map 4354771...    36   3.7    6
(AC097830) Rattus norvegicus clone CH230-80I3, *** SEQUENCIN...    34   3.8    2
(AC005071) Homo sapiens clone RG161A02, complete sequence.         32   3.9    2
(AC145617) Homo sapiens chromosome UNK clone RP11-1200O4, **...    32   3.9    2
(AC145548) Homo sapiens chromosome UNK clone RP11-1438G19, *...    32   3.9    2
(AC093913) Homo sapiens BAC clone RP11-768G3 from 4, complet...    32   3.9    2
(AC189143) Cavia porcellus clone CH234-354G19, WORKING DRAFT...    32   3.9    2
(AC205917) Pongo abelii BAC clone CH276-71G1 from chromosome...    32   3.9    2
(AC005073) Homo sapiens chromosome 7 clone CTB-189J21, WORKI...    32   3.9    2
(AC068835) Homo sapiens chromosome 4 clone RP11-256N1 map 4,...    32   4.0    2
(AY423627) Beet leafhopper transmitted virescence phytoplasm...    44   4.0    2
(AC115682) Dictyostelium discoideum chromosome 2 map 4101105...    34   4.0    5
(AP000628) Homo sapiens genomic DNA, chromosome 11q13 clone:...    32   4.0    2
(AC117081) Dictyostelium discoideum chromosome 2 map 5862124...    32   4.2    9
(AC221709) Bos taurus clone CH240-388A3, WORKING DRAFT SEQUE...    38   4.2    5
(EA104608) Sequence 788 from patent US 7196164.                    32   4.3    2
(EA104607) Sequence 787 from patent US 7196164.                    32   4.3    2
(AR702459) Sequence 788 from patent US 6924354.                    32   4.3    2
(AR702458) Sequence 787 from patent US 6924354.                    32   4.3    2
(AM473596) Vitis vinifera, whole genome shotgun sequence, co...    36   4.8    3
(EV242596) VV_PEd06h03.g1 Vitis vinifera cv. perlette LibD V...    32   5.0    2
(CL037937) CH216-44G3_Sp6.1 CH216 Xenopus (Silurana) tropica...    32   5.0    2
(AG435333) Mus musculus molossinus DNA, clone:MSMg01-313G06....    32   5.0    2
(DX538017) GH_MBb0030C13r GH_MBb Gossypium hirsutum genomic ...    32   5.1    2
(AC223345) Bos taurus clone CH240-421D12, WORKING DRAFT SEQU...    38   5.2    5
(ER763249) SB_BBc13-G10.R SB_BBc Sorghum bicolor genomic 3',...    32   5.2    2
(DX532228) GH_MBb0069P01r GH_MBb Gossypium hirsutum genomic ...    34   5.2    2
(CQ341644) Sequence 15738 from Patent WO0157275.                   38   5.2    2
(CQ304376) Sequence 15481 from Patent WO0186003.                   38   5.2    2
(CQ267355) Sequence 15616 from Patent WO0157277.                   38   5.2    2
(CQ229226) Sequence 16065 from Patent WO0157273.                   38   5.2    2
(CQ205819) Sequence 8096 from Patent WO0157271.                    38   5.2    2
(CQ181473) Sequence 12869 from Patent WO0157274.                   38   5.2    2
(CQ146020) Sequence 16042 from Patent WO0157276.                   38   5.2    2
(CQ107354) Sequence 16213 from Patent WO0157272.                   38   5.2    2
(CQ076365) Sequence 12165 from Patent WO0157278.                   38   5.2    2
(CQ057102) Sequence 7922 from Patent WO0157270.                    38   5.2    2
(ER642439) SB_BBc97-B15.F SB_BBc Sorghum bicolor genomic 5',...    32   5.2    2
(BE274931) 601123047F1 NIH_MGC_20 Homo sapiens cDNA clone IM...    32   5.2    2
(CR095184) Reverse strand read from insert in 5'HPRT inserti...    32   5.2    2
(FF868527) CBWU13331.b1 Yutaka Satou unpublished cDNA librar...    32   5.3    2
(BY803962) Thellungiella halophila cDNA clone: RTFL01-06-B24...    32   5.3    2
(AV704850) Homo sapiens cDNA clone:ADBCYB07, 5'end, expresse...    32   5.3    2
(DB153039) Homo sapiens cDNA clone THYMU3030521, 5' end, mRN...    32   5.3    2
(DB156094) Homo sapiens cDNA clone THYMU3034663, 5' end, mRN...    32   5.3    2
(DA813645) Homo sapiens cDNA clone PEBLM2000659, 5' end, mRN...    32   5.4    2
(AM441625) Vitis vinifera, whole genome shotgun sequence, co...    36   5.4    5
(DX552804) GH_MBb0023O05r GH_MBb Gossypium hirsutum genomic ...    32   5.6    3
(EJ192912) 1092344213715 Global-Ocean-Sampling_GS-27-01-01-1...    40   5.7    2
(AC204494) Macaca mulatta clone CH250-79D4, WORKING DRAFT SE...    40   5.7    7
(AZ207494) SP_0127_B2_B06_SP6E Strongylocentrotus purpuratus...    36   5.9    2
(EX881571) CcLXBa35f09n1 ECB Cyprinus carpio cDNA clone 35f0...    34   5.9    2
(GH609189) G1297P561FI8.T0 C. parvum KSU-1 normalized sporoz...    32   6.1    3
(AC125245) Homo sapiens BAC clone RP11-236P13 from 4, comple...    40   6.1    5
(FB571303) Sequence 170 from Patent EP1865317.                     36   7.1    8
(AC016075) Homo sapiens clone RP11-699A7, WORKING DRAFT SEQU...    40   7.8    6
(CU463258) Zebrafish DNA sequence from clone DKEY-169A9 in l...    44   8.1    1
(BV256768) S235P6274RF3.T0 ItalianGreyhound Canis familiaris...    44   8.1    1
(AL773600) Mouse DNA sequence from clone RP23-79B20 on chrom...    44   8.1    1
(GC700025) Sequence 15270 from patent US 6812339.                  44   8.1    1
(AY100445) Pseudacanthopsylla improvisa cytochrome oxidase s...    44   8.1    1
(AY100439) Livilla monospermae from Spain cytochrome oxidase...    44   8.1    1
(AY100438) Livilla monospermae from Spain cytochrome oxidase...    44   8.1    1
(AY100437) Livilla monospermae from Spain cytochrome oxidase...    44   8.1    1
(AY100416) Arytainilla serpentina cytochrome oxidase subunit...    44   8.1    1
(AY100397) Livilla ima cytochrome oxidase subunit I (COI) ge...    44   8.1    1
(AL137018) Human DNA sequence from clone RP11-133M9 on chrom...    44   8.1    1
(AL023775) Human DNA sequence from clone RP3-497J21 on chrom...    44   8.1    1
(AC111692) Rattus norvegicus clone CH230-16P23, *** SEQUENCI...    44   8.1    1
(AC106507) Rattus norvegicus clone CH230-206D13, *** SEQUENC...    44   8.1    1
(AC100753) Mus musculus clone RP23-427A16, WORKING DRAFT SEQ...    44   8.1    1
(AC094937) Rattus norvegicus clone CH230-6E6, WORKING DRAFT ...    44   8.1    1
(CU570950) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   8.1    1
(CU550668) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   8.1    1
(AL844488) Mouse DNA sequence *** SEQUENCING CANCELLED *** f...    44   8.1    1
(AZ691010) ENTLK46TR Entamoeba histolytica Sheared DNA Entam...    44   8.1    1
(AZ530549) ENTCC72TR Entamoeba histolytica Sheared DNA Entam...    44   8.1    1
(FH558487) CHO_OF4477xc18r1.ab1 CHO_OF4 Nicotiana tabacum ge...    44   8.1    1
(FH558406) CHO_OF4477xc18f1.ab1 CHO_OF4 Nicotiana tabacum ge...    44   8.1    1
(FH541552) CHO_OF4767xp21f1.ab1 CHO_OF4 Nicotiana tabacum ge...    44   8.1    1
(FH532170) CHO_OF4793xn10f1.ab1 CHO_OF4 Nicotiana tabacum ge...    44   8.1    1
(EK566288) 1095521043033 Global-Ocean-Sampling_GS-32-01-01-1...    44   8.1    1
(EK197294) 1095460043426 Global-Ocean-Sampling_GS-31-01-01-1...    44   8.1    1
(EK170679) 1095458072381 Global-Ocean-Sampling_GS-31-01-01-1...    44   8.1    1
(AM640187) Entamoeba dispar GSS, clone dispar72d04.q1k.            44   8.1    1
(CZ952257) 263959 Tomato EcoRI BAC Library Solanum lycopersi...    44   8.1    1
(AG602404) Mus musculus molossinus DNA, clone:MSMg01-534M21....    44   8.1    1
(CX096100) EHAGN07TR E. histolytica Normalized cDNA library ...    44   8.1    1
(CX091571) EHAEU30TR E. histolytica Normalized cDNA library ...    44   8.1    1
(CX086387) EHACJ32TR E. histolytica Normalized cDNA library ...    44   8.1    1
(CT983316) partial cDNA sequence from a Lambda ZAP II normal...    44   8.1    1
(FE245665) CAPG8998.rev CAPG Naegleria gruberi amoeba stage ...    44   8.1    1
(AY423628) Beet leafhopper transmitted virescence phytoplasm...    44   8.1    1
(AG386985) Mus musculus molossinus DNA, clone:MSMg01-201G12....    36   8.6    2
(DQ152041) Megacephala whelani isolate Pwhe-16S/27 16S ribos...    34   8.8    2
(AC224976) Bos taurus clone CH240-470I1, WORKING DRAFT SEQUE...    40   8.8    4
(AV202929) Caenorhabditis elegans cDNA clone:yk556g1 : 5' en...    36   8.8    2
(AC218850) Bos taurus clone CH240-292G3, WORKING DRAFT SEQUE...    38   9.1    5
(AC117326) Rattus norvegicus clone CH230-116G12, *** SEQUENC...    36   9.2    5
(CQ328878) Sequence 2972 from Patent WO0157275.                    38   9.6    2
(CQ291821) Sequence 2926 from Patent WO0186003.                    38   9.6    2
(CQ254739) Sequence 3000 from Patent WO0157277.                    38   9.6    2
(CQ216174) Sequence 3013 from Patent WO0157273.                    38   9.6    2
(CQ200665) Sequence 2942 from Patent WO0157271.                    38   9.6    2
(CQ171546) Sequence 2942 from Patent WO0157274.                    38   9.6    2
(CQ132962) Sequence 2984 from Patent WO0157276.                    38   9.6    2
(CQ094178) Sequence 3037 from Patent WO0157272.                    38   9.6    2
(CQ067127) Sequence 2927 from Patent WO0157278.                    38   9.6    2
(CQ052083) Sequence 2903 from Patent WO0157270.                    38   9.6    2
(AC117070) Dictyostelium discoideum chromosome 2 map 2097701...    32   9.9    7

>(C91199) Dictyostelium discoideum slug cDNA, clone SSJ810.
          Length = 643

 Score = 1144 bits (577), Expect = 0.0
 Identities = 577/577 (100%)
 Strand = Plus / Minus


Query: 57  caagtattgttaaaccaacatttcaaagtagaattatagcatcaacaacattaaatggtg 116
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 586 caagtattgttaaaccaacatttcaaagtagaattatagcatcaacaacattaaatggtg 527


Query: 117 gtgcaggtagagcaacattttgttcagttaatagtattaatccaaatccaacagcaagtc 176
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 gtgcaggtagagcaacattttgttcagttaatagtattaatccaaatccaacagcaagtc 467


Query: 177 aaattaaagttgatcaagaagatttagaagttggtgaacatcttgttattgatgatccaa 236
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 aaattaaagttgatcaagaagatttagaagttggtgaacatcttgttattgatgatccaa 407


Query: 237 atcaacaacatattaaatcatttttaaatggtgttgaatttaatggtaaatcagtaaaca 296
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 atcaacaacatattaaatcatttttaaatggtgttgaatttaatggtaaatcagtaaaca 347


Query: 297 tctatagaccatcaagaaatacaatgcaaactggtacacttcgtacaaagaaatgggtca 356
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 tctatagaccatcaagaaatacaatgcaaactggtacacttcgtacaaagaaatgggtca 287


Query: 357 ttgaattaccttttaatccaaaatggaatgatcgtttaatgggttggtgggcttcaaaag 416
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 ttgaattaccttttaatccaaaatggaatgatcgtttaatgggttggtgggcttcaaaag 227


Query: 417 atactcttaatcaattaaatttaagatttaattctgaaactgatgctgttgcatattgta 476
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 226 atactcttaatcaattaaatttaagatttaattctgaaactgatgctgttgcatattgta 167


Query: 477 aagaaattggtttaaattataatattgtcgaagaagatgtcacattaagaaagaagaaga 536
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 166 aagaaattggtttaaattataatattgtcgaagaagatgtcacattaagaaagaagaaga 107


Query: 537 aatatggtcacagattcagatatagaggtgatttagtaggtgaaaaagaaagagaagttg 596
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 106 aatatggtcacagattcagatatagaggtgatttagtaggtgaaaaagaaagagaagttg 47


Query: 597 gtattaattaaaaatgtttacaacacttttaaaaatt 633
           |||||||||||||||||||||||||||||||||||||
Sbjct: 46  gtattaattaaaaatgtttacaacacttttaaaaatt 10

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 102105510
Number of Hits to DB: 953,468,378
Number of extensions: 70655071
Number of successful extensions: 6175628
Number of sequences better than 10.0: 160
Length of query: 792
Length of database: 101,790,757,118
Length adjustment: 24
Effective length of query: 768
Effective length of database: 99,340,224,878
Effective search space: 76293292706304
Effective search space used: 76293292706304
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)

Query= Contig-U04586-1 (Contig-U04586-1Q) /CSM_Contig/Contig-U04586-1Q.Seq.d
         (792 letters)

Database: nrp_A
           3,268,448 sequences; 1,061,185,681 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q8T1V6) RecName: Full=NADH dehydrogenase [ubiquinone] iron-sulf...   390   e-107
(Q9CXZ1) RecName: Full=NADH dehydrogenase [ubiquinone] iron-sulf...    79   2e-13
AF461018_1(AF461018|pid:none) Gallus gallus NADH dehydrogenase m...    79   2e-13
AK011124_1(AK011124|pid:none) Mus musculus 13 days embryo liver ...    79   2e-13
AF124785_1(AF124785|pid:none) Mus musculus NADH-ubiquinone oxido...    79   2e-13
BC005270_1(BC005270|pid:none) Homo sapiens NADH dehydrogenase (u...    78   4e-13
CP000115_1599(CP000115|pid:none) Nitrobacter winogradskyi Nb-255...    78   4e-13
(Q02375) RecName: Full=NADH dehydrogenase [ubiquinone] iron-sulf...    78   4e-13
(Q5RBX6) RecName: Full=NADH dehydrogenase [ubiquinone] iron-sulf...    77   6e-13
BC078596_1(BC078596|pid:none) Xenopus laevis MGC85528 protein, m...    77   8e-13
DQ214569_1(DQ214569|pid:none) Taeniopygia guttata clone 0058P003...    77   8e-13
CP001349_1593(CP001349|pid:none) Methylobacterium nodulans ORS 2...    77   8e-13
(Q5XIF3) RecName: Full=NADH dehydrogenase [ubiquinone] iron-sulf...    76   1e-12
CP001016_1523(CP001016|pid:none) Beijerinckia indica subsp. indi...    76   1e-12
BC095734_1(BC095734|pid:none) Danio rerio NADH dehydrogenase (ub...    75   2e-12
CP000943_416(CP000943|pid:none) Methylobacterium sp. 4-46, compl...    75   2e-12
(Q0MQH1) RecName: Full=NADH dehydrogenase [ubiquinone] iron-sulf...    75   2e-12
DQ086210_1(DQ086210|pid:none) Ictalurus punctatus NADH dehydroge...    74   4e-12
CP001196_2011(CP001196|pid:none) Oligotropha carboxidovorans OM5...    74   7e-12
CP000494_3805(CP000494|pid:none) Bradyrhizobium sp. BTAi1, compl...    73   9e-12
AP009384_1561(AP009384|pid:none) Azorhizobium caulinodans ORS 57...    73   1e-11
CP000030_59(CP000030|pid:none) Anaplasma marginale str. St. Mari...    73   1e-11
CP000908_3093(CP000908|pid:none) Methylobacterium extorquens PA1...    72   2e-11
CP000235_70(CP000235|pid:none) Anaplasma phagocytophilum HZ, com...    72   3e-11
CP001389_1386(CP001389|pid:none) Rhizobium sp. NGR234, complete ...    71   5e-11
CP001280_535(CP001280|pid:none) Methylocella silvestris BL2, com...    70   6e-11
BT080019_1(BT080019|pid:none) Esox lucius clone eluc-evq-512-074...    70   8e-11
BT075338_1(BT075338|pid:none) Osmerus mordax clone omor-eva-503-...    70   1e-10
CP000613_1053(CP000613|pid:none) Rhodospirillum centenum SW, com...    70   1e-10
CP001001_5358(CP001001|pid:none) Methylobacterium radiotolerans ...    69   1e-10
CP000319_2021(CP000319|pid:none) Nitrobacter hamburgensis X14, c...    69   1e-10
CU459003_2033(CU459003|pid:none) Magnetospirillum gryphiswaldens...    69   2e-10
CP000758_2550(CP000758|pid:none) Ochrobactrum anthropi ATCC 4918...    68   4e-10
CP000084_990(CP000084|pid:none) Candidatus Pelagibacter ubique H...    67   7e-10
CP000781_4144(CP000781|pid:none) Xanthobacter autotrophicus Py2,...    67   7e-10
CP000158_2531(CP000158|pid:none) Hyphomonas neptunium ATCC 15444...    67   7e-10
AC006834_7(AC006834|pid:none) Caenorhabditis elegans cosmid ZK97...    67   7e-10
CU633897_304(CU633897|pid:none) Podospora anserina genomic DNA c...    65   2e-09
AE005673_1382(AE005673|pid:none) Caulobacter crescentus CB15, co...    65   3e-09
AK343148_1(AK343148|pid:none) Acyrthosiphon pisum ACYPI005324 mR...    64   4e-09
CP000237_369(CP000237|pid:none) Neorickettsia sennetsu strain Mi...    64   4e-09
CP000377_143(CP000377|pid:none) Silicibacter sp. TM1040, complet...    64   6e-09
AE008917_1230(AE008917|pid:none) Brucella melitensis 16M chromos...    64   6e-09
CP000031_471(CP000031|pid:none) Ruegeria pomeroyi DSS-3, complet...    64   6e-09
AJ720424_1(AJ720424|pid:none) Gallus gallus mRNA for hypothetica...    64   7e-09
CP000633_1673(CP000633|pid:none) Agrobacterium vitis S4 chromoso...    64   7e-09
CP000356_512(CP000356|pid:none) Sphingopyxis alaskensis RB2256, ...    62   2e-08
CP000362_1165(CP000362|pid:none) Roseobacter denitrificans OCh 1...    62   3e-08
CP000628_1637(CP000628|pid:none) Agrobacterium radiobacter K84 c...    62   3e-08
CP001562_1048(CP001562|pid:none) Bartonella grahamii as4aup, com...    62   3e-08
DQ440451_1(DQ440451|pid:none) Aedes aegypti clone AET-6097 mitoc...    61   4e-08
AE014298_2973(AE014298|pid:none) Drosophila melanogaster chromos...    61   5e-08
BT025921_1(BT025921|pid:none) Drosophila melanogaster IP11020 fu...    61   5e-08
AM920437_911(AM920437|pid:none) Penicillium chrysogenum Wisconsi...    59   1e-07
CP000133_1854(CP000133|pid:none) Rhizobium etli CFN 42, complete...    59   1e-07
BT065386_1(BT065386|pid:none) Zea mays full-length cDNA clone ZM...    59   1e-07
AP003803_18(AP003803|pid:none) Oryza sativa Japonica Group genom...    59   1e-07
AB013390_14(AB013390|pid:none) Arabidopsis thaliana genomic DNA,...    59   2e-07
AY086840_1(AY086840|pid:none) Arabidopsis thaliana clone 28455 m...    59   2e-07
EU819141_15(EU819141|pid:none) Uncultured Roseobacter sp. clone ...    59   2e-07
CP001074_1940(CP001074|pid:none) Rhizobium etli CIAT 652, comple...    59   2e-07
CP000248_1351(CP000248|pid:none) Novosphingobium aromaticivorans...    58   3e-07
BT071043_1(BT071043|pid:none) Picea sitchensis clone WS02768_J05...    58   3e-07
AP007154_592(AP007154|pid:none) Aspergillus oryzae RIB40 genomic...    58   4e-07
BX897700_710(BX897700|pid:none) Bartonella quintana str. Toulous...    58   4e-07
EF148655_1(EF148655|pid:none) Populus trichocarpa x Populus delt...    57   7e-07
AM236080_2110(AM236080|pid:none) Rhizobium leguminosarum bv. vic...    57   9e-07
CP000661_2854(CP000661|pid:none) Rhodobacter sphaeroides ATCC 17...    56   2e-06
AY365058_1(AY365058|pid:none) Chlamydomonas reinhardtii NADH:ubi...    55   2e-06
AY814088_1(AY814088|pid:none) Schistosoma japonicum SJCHGC05603 ...    55   3e-06
CP000236_201(CP000236|pid:none) Ehrlichia chaffeensis str. Arkan...    55   3e-06
AM999887_928(AM999887|pid:none) Wolbachia endosymbiont of Culex ...    54   6e-06
CP000699_3423(CP000699|pid:none) Sphingomonas wittichii RW1, com...    54   8e-06
AE017321_541(AE017321|pid:none) Wolbachia endosymbiont strain TR...    53   1e-05
AC136142_8(AC136142|pid:none) Medicago truncatula clone mth2-9f9...    53   1e-05
AE017196_153(AE017196|pid:none) Wolbachia endosymbiont of Drosop...    52   2e-05
CP001391_66(CP001391|pid:none) Wolbachia sp. wRi, complete genome.     52   2e-05
CP000394_926(CP000394|pid:none) Granulibacter bethesdensis CGDNI...    52   2e-05
CP000107_771(CP000107|pid:none) Ehrlichia canis str. Jake, compl...    52   3e-05
AC140720_7(AC140720|pid:none) Medicago truncatula clone mth2-17l...    50   6e-05
CP000157_735(CP000157|pid:none) Erythrobacter litoralis HTCC2594...    49   2e-04
AJ003064_4(AJ003064|pid:none) Bradyrhizobium japonicum small hea...    49   2e-04
(P25711) RecName: Full=NADH-ubiquinone oxidoreductase 21 kDa sub...    48   3e-04
X78082_1(X78082|pid:none) N.crassa NUO-21 mRNA.                        48   3e-04
CP001349_2138(CP001349|pid:none) Methylobacterium nodulans ORS 2...    47   7e-04
FN392320_939(FN392320|pid:none) Pichia pastoris GS115 chromosome...    45   0.002
CP001150_389(CP001150|pid:none) Rhodobacter sphaeroides KD131 ch...    45   0.002
CR382128_581(CR382128|pid:none) Yarrowia lipolytica strain CLIB1...    44   0.005
CP001196_161(CP001196|pid:none) Oligotropha carboxidovorans OM5 ...    44   0.005
EU976915_1(EU976915|pid:none) Zea mays clone 993575 unknown mRNA.      44   0.005
CP000874_499(CP000874|pid:none) Rhizobium sp. NGR234 plasmid pNG...    44   0.006
CP000760_159(CP000760|pid:none) Ochrobactrum anthropi ATCC 49188...    43   0.010
CP000760_14(CP000760|pid:none) Ochrobactrum anthropi ATCC 49188 ...    41   0.051
CP000500_225(CP000500|pid:none) Pichia stipitis CBS 6054 chromos...    39   0.25
CP001001_4058(CP001001|pid:none) Methylobacterium radiotolerans ...    38   0.43
CP000356_2058(CP000356|pid:none) Sphingopyxis alaskensis RB2256,...    37   0.56
FM992688_93(FM992688|pid:none) Candida dubliniensis CD36 chromos...    37   0.74
CP001325_543(CP001325|pid:none) Micromonas sp. RCC299 chromosome...    37   0.96
AE017332_395(AE017332|pid:none) Mycoplasma hyopneumoniae 232, co...    36   1.3
AM494475_1045(AM494475|pid:none) Orientia tsutsugamushi Boryong ...    35   2.1
AY232225_1(AY232225|pid:none) Drosophila yakuba clone yak-ad_CG1...    35   2.8
CT978603_1492(CT978603|pid:none) Synechococcus sp. RCC307 genomi...    35   2.8
CT573326_2987(CT573326|pid:none) Pseudomonas entomophila str. L4...    35   3.7
CP000436_212(CP000436|pid:none) Haemophilus somnus 129PT, comple...    35   3.7
CP001020_711(CP001020|pid:none) Coxiella burnetii CbuK_Q154, com...    34   4.8
AF055359_1(AF055359|pid:none) Ureaplasma urealyticum serovar 11 ...    33   8.1

>(Q8T1V6) RecName: Full=NADH dehydrogenase [ubiquinone] iron-sulfur
           protein 4, mitochondrial; Flags: Precursor;
           &AC116100_14(AC116100|pid:none)
          Length = 190

 Score =  390 bits (1002), Expect = e-107
 Identities = 190/190 (100%), Positives = 190/190 (100%)
 Frame = +2

Query: 35  MLKKFLISSIVKPTFQSRIIASTTLNGGAGRATFCSVNSINPNPTASQIKVDQEDLEVGE 214
           MLKKFLISSIVKPTFQSRIIASTTLNGGAGRATFCSVNSINPNPTASQIKVDQEDLEVGE
Sbjct: 1   MLKKFLISSIVKPTFQSRIIASTTLNGGAGRATFCSVNSINPNPTASQIKVDQEDLEVGE 60

Query: 215 HLVIDDPNQQHIKSFLNGVEFNGKSVNIYRPSRNTMQTGTLRTKKWVIELPFNPKWNDRL 394
           HLVIDDPNQQHIKSFLNGVEFNGKSVNIYRPSRNTMQTGTLRTKKWVIELPFNPKWNDRL
Sbjct: 61  HLVIDDPNQQHIKSFLNGVEFNGKSVNIYRPSRNTMQTGTLRTKKWVIELPFNPKWNDRL 120

Query: 395 MGWWASKDTLNQLNLRFNSETDAVAYCKEIGLNYNIVEEDVTLRKKKKYGHRFRYRGDLV 574
           MGWWASKDTLNQLNLRFNSETDAVAYCKEIGLNYNIVEEDVTLRKKKKYGHRFRYRGDLV
Sbjct: 121 MGWWASKDTLNQLNLRFNSETDAVAYCKEIGLNYNIVEEDVTLRKKKKYGHRFRYRGDLV 180

Query: 575 GEKEREVGIN 604
           GEKEREVGIN
Sbjct: 181 GEKEREVGIN 190

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3268448
Number of Hits to DB: 887,127,023
Number of extensions: 15646520
Number of successful extensions: 44014
Number of sequences better than 10.0: 106
Number of HSP's gapped: 43957
Number of HSP's successfully gapped: 106
Length of query: 264
Length of database: 1,061,185,681
Length adjustment: 126
Effective length of query: 138
Effective length of database: 649,361,233
Effective search space: 89611850154
Effective search space used: 89611850154
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 31 (16.5 bits)

 psg: 0.74  gvh: 0.45  alm: 0.44  top: 0.53  tms: 0.00  mit: 0.42  mip: 0.08
 nuc: 0.08  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 60.0 %: mitochondrial
	 28.0 %: nuclear
	  8.0 %: cytoplasmic
	  4.0 %: cytoskeletal

>> prediction for Contig-U04586-1 is mit