| Contig-U04585-1 |
| Contig ID |
Contig-U04585-1 |
| Contig update |
2001. 8.29 |
| Contig sequence |
 |
| Gap |
no gap |
| Contig length |
567 |
| Chromosome number (1..6, M) |
6 |
| Chromosome length |
3595308 |
| Start point |
3533466 |
| End point |
3534018 |
| Strand (PLUS/MINUS) |
PLUS |
| Number of clones |
2 |
| Number of EST |
2 |
| Link to clone list |
U04585 |
| List of clone(s) |
|
| Translated Amino Acid sequence |
|
| Translated Amino Acid sequence (All Frames) |
|
| own update |
2004. 6.10 |
| Homology vs CSM-cDNA |
|
| dna update |
2009. 6.25 |
| Homology vs DNA |
Query= Contig-U04585-1 (Contig-U04585-1Q) /CSM_Contig/Contig-U04585-1Q.Seq.d
(567 letters)
Database: ddbj_A
102,105,510 sequences; 101,790,757,118 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value N
(AU037752) Dictyostelium discoideum slug cDNA, clone SSE251. 660 0.0 1
(AU037240) Dictyostelium discoideum slug cDNA, clone SSB648. 551 e-152 1
(AU071491) Dictyostelium discoideum slug cDNA, clone SSB648. 410 e-110 1
(AL954767) Zebrafish DNA sequence from clone CH211-225B14 in... 50 0.093 1
(CU856132) Zebrafish DNA sequence *** SEQUENCING CANCELLED *... 50 0.093 1
(EK334820) 1095467037441 Global-Ocean-Sampling_GS-31-01-01-1... 44 0.21 2
(DT486243) WS02530.B21_G22 PT-MB-N-A-15 Populus trichocarpa ... 34 0.22 3
(FI042230) CHO_OF6467xb08f1.ab1 CHO_OF6 Nicotiana tabacum ge... 48 0.37 1
(AY355380) Rickettsia montanensis surface antigen (sca2) gen... 34 0.50 3
(EJ579840) 1092960147066 Global-Ocean-Sampling_GS-29-01-01-1... 32 0.65 3
(EK292104) 1095462333989 Global-Ocean-Sampling_GS-31-01-01-1... 38 0.66 2
(FG635647) TT-05_G17 Samsun trichome library Nicotiana tabac... 36 0.70 2
(FG635582) TT-04_L24 Samsun trichome library Nicotiana tabac... 36 0.72 2
(BX511184) Zebrafish DNA sequence from clone DKEY-103A3 in l... 40 0.73 4
(CT027682) Zebrafish DNA sequence from clone CH211-53M15 in ... 40 0.77 6
(AC234238) Medicago truncatula chromosome 2 clone mth2-65k12... 40 0.80 3
(CA227313) SCJLFL3010A11.g Saccharum officinarum FL3 Sacchar... 40 0.91 2
(AY280606) Myrmica sulcinodis isolate Msul110 cytochrome c o... 34 0.98 2
(AC215404) Solanum lycopersicum chromosome 2 clone C02HBa016... 38 1.3 6
(EK140263) 1095454095254 Global-Ocean-Sampling_GS-31-01-01-1... 46 1.4 1
(AQ217782) HS_3006_A2_D06_MR CIT Approved Human Genomic Sper... 46 1.4 1
(CZ992884) 183361 Tomato MboI BAC Library Solanum lycopersic... 46 1.4 1
(BW641785) Dugesia ryukyuensis mRNA, clone: Dr_sW_022_F16, 5... 46 1.4 1
(AC093097) Drosophila melanogaster, chromosome 2L, region 36... 38 1.5 4
(BA000026) Mycoplasma penetrans HF-2 DNA, complete genome. 38 1.7 12
(AC024094) Homo sapiens 4 RP11-193M13 (Roswell Park Cancer I... 42 1.7 2
(AC121589) Mus musculus BAC clone RP23-281G14 from chromosom... 36 2.0 5
(AC006887) Caenorhabditis elegans clone Y59H11, *** SEQUENCI... 42 2.0 5
(EU275726) Polysphondylium pallidum strain PN500 mitochondri... 42 2.2 4
(FJ496353) Linepithema oblongum isolate O2 cytochrome oxidas... 34 2.5 2
(FJ496352) Linepithema oblongum isolate O1 cytochrome oxidas... 34 2.5 2
(BM397351) 5009-0-31-E06.t.1 Chilcoat/Turkewitz cDNA (large ... 36 2.6 2
(DQ220499) Arabidopsis thaliana ecotype Sq8 disease resistan... 40 2.7 2
(DQ220496) Arabidopsis thaliana ecotype Rrs-7 disease resist... 40 2.7 2
(DQ220494) Arabidopsis thaliana ecotype Rf-4 disease resista... 40 2.7 2
(DQ220492) Arabidopsis thaliana ecotype Gr24 disease resista... 40 2.7 2
(DQ220491) Arabidopsis thaliana ecotype Ct-1 disease resista... 40 2.7 2
(DQ220490) Arabidopsis thaliana ecotype Bur-0 disease resist... 40 2.7 2
(DQ220489) Arabidopsis thaliana ecotype Ang-0 disease resist... 40 2.7 2
(DQ220488) Arabidopsis thaliana ecotype Tamm-46 disease resi... 40 2.7 2
(DQ220498) Arabidopsis thaliana ecotype Sq1 disease resistan... 40 2.7 2
(DQ220497) Arabidopsis thaliana ecotype Sorbo disease resist... 40 2.7 2
(DQ220495) Arabidopsis thaliana ecotype Roc disease resistan... 40 2.7 2
(DQ220493) Arabidopsis thaliana ecotype Kas-1 disease resist... 40 2.7 2
(FC564590) CAWF5578.fwd CAWF Lottia gigantea from mantle (H)... 34 2.7 3
(AF147050) Linepithema humile cytochrome c oxidase subunit 1... 34 2.8 2
(AC117314) Rattus norvegicus clone CH230-315F13, WORKING DRA... 34 2.8 2
(AC175130) Bos taurus clone CH240-38F23, WORKING DRAFT SEQUE... 34 2.8 2
(AC173499) Bos taurus clone CH240-313G1, WORKING DRAFT SEQUE... 34 2.8 2
(FC615522) CAXS7746.fwd CAXS Lottia gigantea from head, foot... 34 2.9 3
(AC116925) Dictyostelium discoideum chromosome 2 map 4189423... 32 3.1 2
(AC149345) Phakopsora pachyrhizi clone JGIAFNA-33E13, comple... 34 3.1 2
(AM436050) Vitis vinifera contig VV78X125157.8, whole genome... 32 3.3 2
(BM401040) 5009-0-81-G12.t.1 Chilcoat/Turkewitz cDNA (large ... 36 3.3 2
(DU914902) 326392 Tomato EcoRI BAC Library Solanum lycopersi... 34 3.7 2
(AU051926) Dictyostelium discoideum slug cDNA, clone SSC412. 32 3.7 2
(AY762655) Aphaenogaster sp. ZC-2004 cytochrome c oxidase su... 34 3.8 2
(AY762646) Aphaenogaster smythiesii cytochrome c oxidase sub... 34 3.8 2
(CN383280) 4117481 BARC_3GAL chicken mixed tissue Gallus gal... 34 3.8 2
(BJ385499) Dictyostelium discoideum cDNA clone:ddc55l06, 3' ... 32 3.8 2
(C90486) Dictyostelium discoideum slug cDNA, clone SSI592. 32 3.8 2
(BJ755187) Caenorhabditis elegans cDNA clone:yk1410h07 : 5' ... 34 3.8 2
(AU037556) Dictyostelium discoideum slug cDNA, clone SSD782. 32 3.8 2
(C93282) Dictyostelium discoideum slug cDNA, clone SSM521. 32 3.8 2
(BJ757236) Caenorhabditis elegans cDNA clone:yk1499e10 : 5' ... 34 3.8 2
(C90409) Dictyostelium discoideum slug cDNA, clone SSI370. 32 3.8 2
(AU261750) Dictyostelium discoideum vegetative cDNA clone:VS... 32 3.9 2
(C89871) Dictyostelium discoideum slug cDNA, clone SSG559. 32 3.9 2
(AU051953) Dictyostelium discoideum slug cDNA, clone SSC469. 32 3.9 2
(FE934109) AHAI-aab01d04.b1 Pristionchus_pacificus_AHAI1_EST... 34 4.0 2
(BX324205) Zebrafish DNA sequence from clone CH211-10K1 in l... 44 4.3 3
(DQ023112) Cardiocondyla ulianini isolate ulianini65A cytoch... 34 4.5 2
(DQ023111) Cardiocondyla ulianini cytochrome oxidase subunit... 34 4.5 2
(DQ023114) Cardiocondyla ulianini isolate ulianini70A cytoch... 34 4.5 2
(DQ023106) Cardiocondyla sahlbergi isolate sahlbergi56A cyto... 34 4.5 2
(BM396111) 5009-0-17-D10.t.1 Chilcoat/Turkewitz cDNA (large ... 36 5.3 2
(CS468878) Sequence 69 from Patent EP1748080. 34 5.3 6
(CS468877) Sequence 68 from Patent EP1748080. 34 5.3 6
(CS419355) Sequence 69 from Patent WO2006094836. 34 5.3 6
(CS419354) Sequence 68 from Patent WO2006094836. 34 5.3 6
(CU856353) Zebrafish DNA sequence from clone CH1073-363P5. 40 5.3 2
(CP000061) Aster yellows witches'-broom phytoplasma AYWB, co... 34 5.4 9
(BX324116) Zebrafish DNA sequence from clone CH211-114G7 in ... 44 5.7 1
(AM452088) Vitis vinifera contig VV78X074797.10, whole genom... 44 5.7 1
(AC174347) Medicago truncatula chromosome 8 clone mth2-173b1... 44 5.7 1
(M62848) Lytechinus pictus calcium binding protein (LpS1-bet... 44 5.7 1
(AL390789) Human DNA sequence from clone RP11-572N15 on chro... 44 5.7 1
(AL031662) Human DNA sequence from clone RP3-460J8 on chromo... 44 5.7 1
(AC026539) Homo sapiens chromosome 20 clone RP11-712N14 map ... 44 5.7 1
(CR847565) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 44 5.7 1
(AL356303) Human DNA sequence *** SEQUENCING CANCELLED *** f... 44 5.7 1
(AC198946) Macaca mulatta chromosome 10 clone CH250-62A23, W... 44 5.7 1
(AC174788) Bos taurus clone CH240-185D22, WORKING DRAFT SEQU... 44 5.7 1
(AC169141) Oryctolagus cuniculus clone LB1-278K6, WORKING DR... 44 5.7 1
(AC165395) Oryctolagus cuniculus clone LB1-313F21, WORKING D... 44 5.7 1
(AC010784) Homo sapiens clone RP11-6L13, WORKING DRAFT SEQUE... 44 5.7 1
(FH584164) CHO_OF4668xp22r1.ab1 CHO_OF4 Nicotiana tabacum ge... 44 5.7 1
(ER631987) 1093018498116 Global-Ocean-Sampling_GS-36-01-01-2... 44 5.7 1
(ER509708) 1093015436385 Global-Ocean-Sampling_GS-35-01-01-1... 44 5.7 1
(ER372633) 1093025172833 Global-Ocean-Sampling_GS-34-01-01-1... 44 5.7 1
(ER372261) 1093025101890 Global-Ocean-Sampling_GS-34-01-01-1... 44 5.7 1
(ER360810) 1092402601165 Global-Ocean-Sampling_GS-34-01-01-1... 44 5.7 1
(EK404034) 1095469557393 Global-Ocean-Sampling_GS-31-01-01-1... 44 5.7 1
(EK345114) 1095467364966 Global-Ocean-Sampling_GS-31-01-01-1... 44 5.7 1
(EK181179) 1095458122488 Global-Ocean-Sampling_GS-31-01-01-1... 44 5.7 1
(EK059562) 1092960064450 Global-Ocean-Sampling_GS-31-01-01-1... 44 5.7 1
(EJ934296) 1093018821108 Global-Ocean-Sampling_GS-30-02-01-1... 44 5.7 1
(EJ915308) 1093018557265 Global-Ocean-Sampling_GS-30-02-01-1... 44 5.7 1
(EJ892947) 1093018451869 Global-Ocean-Sampling_GS-30-02-01-1... 44 5.7 1
(EJ867374) 1093018288570 Global-Ocean-Sampling_GS-30-02-01-1... 44 5.7 1
(EJ841930) 1093017836764 Global-Ocean-Sampling_GS-30-02-01-1... 44 5.7 1
(AM674057) Entamoeba terrapinae GSS, clone terra263a10.p1k. 44 5.7 1
(EJ530861) 1092955224709 Global-Ocean-Sampling_GS-29-01-01-1... 44 5.7 1
(EJ524684) 1092955174535 Global-Ocean-Sampling_GS-29-01-01-1... 44 5.7 1
(EJ358057) 1092963673313 Global-Ocean-Sampling_GS-28-01-01-1... 44 5.7 1
(EJ288572) 1095370003368 Global-Ocean-Sampling_GS-27-01-01-1... 44 5.7 1
(EJ251181) 1095344033102 Global-Ocean-Sampling_GS-27-01-01-1... 44 5.7 1
(EJ120344) 1092343370092 Global-Ocean-Sampling_GS-27-01-01-1... 44 5.7 1
(EJ119314) 1092343365676 Global-Ocean-Sampling_GS-27-01-01-1... 44 5.7 1
(EJ116077) 1092343353562 Global-Ocean-Sampling_GS-27-01-01-1... 44 5.7 1
(EI760708) CHORI510R311E15TF BAC library from the primary ov... 44 5.7 1
(EI486578) PV_GBa0101B13.f PV_GBa Phaseolus vulgaris genomic... 44 5.7 1
(ED870214) OA_CBa0047E12.r OA_CBa Oryza australiensis genomi... 44 5.7 1
(CC490571) CH240_323H18.TARBAC13P2 CHORI-240 Bos taurus geno... 44 5.7 1
(BX241637) Danio rerio genomic clone DKEY-287C10, genomic su... 44 5.7 1
(DC220157) Plasmodium berghei strain ANKA cDNA clone:MZ00216... 44 5.7 1
(DB872565) Lipochromis sp. 'matumbi hunter' cDNA clone:hm773... 44 5.7 1
(CV616638) mdw94c04.b2 Hc6AS_Y Ajellomyces capsulatus cDNA 3... 44 5.7 1
(CJ384193) Molgula tectiformis cDNA, gastrula/neurula clone:... 44 5.7 1
(CJ381441) Molgula tectiformis cDNA, gastrula/neurula clone:... 44 5.7 1
(CJ367594) Molgula tectiformis cDNA, gastrula/neurula clone:... 44 5.7 1
(CJ362324) Molgula tectiformis cDNA, cleaving embryo clone:m... 44 5.7 1
(CJ360893) Molgula tectiformis cDNA, cleaving embryo clone:m... 44 5.7 1
(CJ338987) Molgula tectiformis cDNA, embryo just before hatc... 44 5.7 1
(CF777478) tad11d02.y1 Hydra EST -IV Hydra magnipapillata cD... 44 5.7 1
(BP110533) Bos taurus cDNA, clone:ORCS10634, 5' end. 44 5.7 1
(BB749411) Mus musculus cDNA, RIKEN full-length enriched lib... 44 5.7 1
(AW874713) SWYACAL06B01SK Brugia malayi young adult cDNA (SA... 44 5.7 1
(CP000849) Rickettsia bellii OSU 85-389, complete genome. 44 5.7 1
(CP000488) Candidatus Ruthia magnifica str. Cm (Calyptogena ... 44 5.7 1
(CP000087) Rickettsia bellii RML369-C, complete genome. 44 5.7 1
(DY231084) EST01832 BmP Bombyx mori cDNA clone BmpC_C46_2005... 38 5.8 2
(AL929356) Plasmodium falciparum strain 3D7, chromosome 9; s... 34 5.9 6
(BB974385) Plasmodium berghei str. ANKA cDNA clone: OK004188... 34 6.0 2
(BX000511) Oryza sativa chromosome 12, . BAC OJ1136_E08 of l... 36 6.1 4
(AC096427) Rattus norvegicus clone CH230-153F21, WORKING DRA... 40 6.8 3
(BP177638) Bombyx mori cDNA, clone: maV30055, 5' end sequence. 38 7.0 2
(AZ526601) 257PbD04 Pb MBN #21 Plasmodium berghei genomic 3'... 36 7.5 2
(AC189592) Brassica rapa subsp. pekinensis clone KBrH013K13,... 40 8.3 4
(FC745653) CBBI1576.rev CBBI Lottia gigantea 26h,37h,61h Lar... 36 8.3 2
(AM665812) Entamoeba terrapinae GSS, clone terra014g03.p1k. 32 8.6 3
(AC222433) Bos taurus clone CH240-418B3, WORKING DRAFT SEQUE... 42 9.3 5
(AP005229) Homo sapiens genomic DNA, chromosome 18, clone:RP... 40 9.3 3
(AZ690394) ENTLF44TR Entamoeba histolytica Sheared DNA Entam... 32 9.4 3
(CU929190) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 40 9.7 4
(AZ670373) ENTMN77TR Entamoeba histolytica Sheared DNA Entam... 32 10.0 3
>(AU037752) Dictyostelium discoideum slug cDNA, clone SSE251.
Length = 477
Score = 660 bits (333), Expect = 0.0
Identities = 339/342 (99%)
Strand = Plus / Plus
Query: 68 cttcaattggatttataactacaaatacaacaagaagaaatttttgttcaaataaaatag 127
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 cttcaatnggatttataactacaaatacaacaagaagaaatttttgttcaaataaaatag 127
Query: 128 gtggttttacaattaaaaatgttgaagatgaatcaaagattaaaataaataatgaaattt 187
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 gtggttttacaattaaaaatgttgaagatgaatcaaagattaaaataaataatgaaattt 187
Query: 188 cagagatagagaaattacgtaaaaaattattatatcaaagtaaagaaagaggaatgttag 247
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 cagagatagagaaattacgtaaaaaattattatatcaaagtaaagaaagaggaatgttag 247
Query: 248 aaaatgatttattattaggtagttttgcaacattaaatattcataaacttacagaatcac 307
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 aaaatgatttattattaggtagttttgcaacattaaatattcataaacttacagaatcac 307
Query: 308 aacttagagattataatttactnttacaacaaccagatcctgatatttttaattggattc 367
|||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct: 308 aacttagagattataatttantcttacaacaaccagatcctgatatttttaattggattc 367
Query: 368 taaaaaaggctgaagtccctgaagaatttgaaactgaagttt 409
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 taaaaaaggctgaagtccctgaagaatttgaaactgaagttt 409
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Number of Sequences: 102105510
Number of Hits to DB: 627,683,360
Number of extensions: 43951515
Number of successful extensions: 3894863
Number of sequences better than 10.0: 158
Length of query: 567
Length of database: 101,790,757,118
Length adjustment: 23
Effective length of query: 544
Effective length of database: 99,442,330,388
Effective search space: 54096627731072
Effective search space used: 54096627731072
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
|
| protein update |
2009. 7.30 |
| Homology vs Protein |
Query= Contig-U04585-1 (Contig-U04585-1Q) /CSM_Contig/Contig-U04585-1Q.Seq.d
(567 letters)
Database: nrp_A
3,268,448 sequences; 1,061,185,681 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
FN357354_13(FN357354|pid:none) Schistosoma mansoni genome sequen... 77 4e-13
EU251058_1(EU251058|pid:none) Artemia franciscana clone 14JB13.0... 72 1e-11
AK013454_1(AK013454|pid:none) Mus musculus 10, 11 days embryo wh... 69 7e-11
CP000087_850(CP000087|pid:none) Rickettsia bellii RML369-C, comp... 69 7e-11
(Q5RJQ7) RecName: Full=Protein EMI5 homolog, mitochondrial; Flag... 69 9e-11
(Q5R4W7) RecName: Full=Protein EMI5 homolog, mitochondrial; Flag... 67 3e-10
AE013599_620(AE013599|pid:none) Drosophila melanogaster chromoso... 67 3e-10
(Q3ZBC2) RecName: Full=Protein EMI5 homolog, mitochondrial; Flag... 67 4e-10
AB047597_1(AB047597|pid:none) Macaca fascicularis brain cDNA, cl... 67 4e-10
(Q9NX18) RecName: Full=Protein EMI5 homolog, mitochondrial; Flag... 67 4e-10
AY814671_1(AY814671|pid:none) Schistosoma japonicum SJCHGC09209 ... 66 8e-10
AJ293314_12(AJ293314|pid:none) Rickettsia rickettsii recG gene (... 66 8e-10
(A3KP74) RecName: Full=Protein EMI5 homolog, mitochondrial; Flag... 66 8e-10
CP000053_366(CP000053|pid:none) Rickettsia felis URRWXCal2, comp... 65 1e-09
AE017197_562(AE017197|pid:none) Rickettsia typhi str. Wilmington... 65 1e-09
CP000683_669(CP000683|pid:none) Rickettsia massiliae MTU5, compl... 65 1e-09
AE006914_914(AE006914|pid:none) Rickettsia conorii str. Malish 7... 65 1e-09
AJ293315_12(AJ293315|pid:none) Rickettsia montanensis recG gene ... 64 3e-09
CP000409_359(CP000409|pid:none) Rickettsia canadensis str. McKie... 64 4e-09
AE017341_455(AE017341|pid:none) Cryptococcus neoformans var. neo... 64 4e-09
(Q10440) RecName: Full=Uncharacterized protein C12B10.06c; &CU3... 63 5e-09
CR380955_346(CR380955|pid:none) Candida glabrata strain CBS138 c... 62 8e-09
CU928174_221(CU928174|pid:none) Zygosaccharomyces rouxii strain ... 62 8e-09
CP001280_2161(CP001280|pid:none) Methylocella silvestris BL2, co... 62 8e-09
CP001001_1613(CP001001|pid:none) Methylobacterium radiotolerans ... 62 8e-09
CT005267_113(CT005267|pid:none) Leishmania major strain Friedlin... 62 1e-08
CP000847_861(CP000847|pid:none) Rickettsia akari str. Hartford, ... 62 1e-08
CP000230_1722(CP000230|pid:none) Rhodospirillum rubrum ATCC 1117... 61 2e-08
CP001349_6872(CP001349|pid:none) Methylobacterium nodulans ORS 2... 61 2e-08
CU459003_1160(CU459003|pid:none) Magnetospirillum gryphiswaldens... 60 3e-08
BT082246_1(BT082246|pid:none) Anoplopoma fimbria clone afim-evh-... 60 5e-08
AP007255_2466(AP007255|pid:none) Magnetospirillum magneticum AMB... 59 9e-08
CP000237_902(CP000237|pid:none) Neorickettsia sennetsu strain Mi... 58 2e-07
CP001510_4208(CP001510|pid:none) Methylobacterium extorquens AM1... 57 3e-07
CP000115_1507(CP000115|pid:none) Nitrobacter winogradskyi Nb-255... 57 4e-07
AK340810_1(AK340810|pid:none) Acyrthosiphon pisum ACYPI004221 mR... 57 5e-07
CP000394_835(CP000394|pid:none) Granulibacter bethesdensis CGDNI... 56 6e-07
AE016818_542(AE016818|pid:none) Ashbya gossypii (= Eremothecium ... 56 6e-07
CP000449_1482(CP000449|pid:none) Maricaulis maris MCS10, complet... 55 1e-06
AM269977_21(AM269977|pid:none) Aspergillus niger contig An01c030... 55 1e-06
FN392320_339(FN392320|pid:none) Pichia pastoris GS115 chromosome... 55 2e-06
BC060090_1(BC060090|pid:none) Mus musculus RIKEN cDNA 0610038F07... 54 2e-06
AE017321_56(AE017321|pid:none) Wolbachia endosymbiont strain TRS... 54 2e-06
BT068814_1(BT068814|pid:none) Zea mays full-length cDNA clone ZM... 54 3e-06
AE017196_973(AE017196|pid:none) Wolbachia endosymbiont of Drosop... 54 3e-06
CP001016_883(CP001016|pid:none) Beijerinckia indica subsp. indic... 54 3e-06
AP008217_1011(AP008217|pid:none) Oryza sativa (japonica cultivar... 53 5e-06
CP000107_841(CP000107|pid:none) Ehrlichia canis str. Jake, compl... 53 5e-06
AE005673_1832(AE005673|pid:none) Caulobacter crescentus CB15, co... 53 7e-06
AL591688_1657(AL591688|pid:none) Sinorhizobium meliloti 1021 com... 53 7e-06
CP000377_1732(CP000377|pid:none) Silicibacter sp. TM1040, comple... 53 7e-06
CP000158_1952(CP000158|pid:none) Hyphomonas neptunium ATCC 15444... 52 9e-06
CP000774_3064(CP000774|pid:none) Parvibaculum lavamentivorans DS... 52 9e-06
CP001074_2106(CP001074|pid:none) Rhizobium etli CIAT 652, comple... 52 9e-06
AD2795(AD2795) conserved hypothetical protein Atu1779 [imported]... 52 9e-06
AY458649_38(AY458649|pid:none) Uncultured marine bacterium 582 c... 52 9e-06
AE007869_1740(AE007869|pid:none) Agrobacterium tumefaciens str. ... 52 9e-06
CP000390_1693(CP000390|pid:none) Mesorhizobium sp. BNC1, complet... 51 2e-05
CP000633_1719(CP000633|pid:none) Agrobacterium vitis S4 chromoso... 51 2e-05
AM494475_2179(AM494475|pid:none) Orientia tsutsugamushi Boryong ... 51 2e-05
AB017063_18(AB017063|pid:none) Arabidopsis thaliana genomic DNA,... 51 3e-05
EF086808_1(EF086808|pid:none) Picea sitchensis clone WS02733_I10... 51 3e-05
BA000012_654(BA000012|pid:none) Mesorhizobium loti MAFF303099 DN... 50 4e-05
(Q5WWK6) RecName: Full=UPF0350 protein lpl1447; &CR628337_1457(... 50 6e-05
CP000830_760(CP000830|pid:none) Dinoroseobacter shibae DFL 12, c... 50 6e-05
AE008918_688(AE008918|pid:none) Brucella melitensis 16M chromoso... 50 6e-05
CP000494_3914(CP000494|pid:none) Bradyrhizobium sp. BTAi1, compl... 49 7e-05
CP000250_2841(CP000250|pid:none) Rhodopseudomonas palustris HaA2... 49 1e-04
CP001574_222(CP001574|pid:none) Micromonas sp. RCC299 chromosome... 49 1e-04
CP000264_2652(CP000264|pid:none) Jannaschia sp. CCS1, complete g... 48 2e-04
CP000301_2580(CP000301|pid:none) Rhodopseudomonas palustris BisB... 47 5e-04
CP000283_2610(CP000283|pid:none) Rhodopseudomonas palustris BisB... 47 5e-04
AK317168_1(AK317168|pid:none) Arabidopsis thaliana AT5G51040 mRN... 46 6e-04
AM889285_1885(AM889285|pid:none) Gluconacetobacter diazotrophicu... 46 6e-04
CP000613_1225(CP000613|pid:none) Rhodospirillum centenum SW, com... 45 0.001
CU207211_1677(CU207211|pid:none) Herminiimonas arsenicoxydans ch... 45 0.002
(Q83D70) RecName: Full=UPF0350 protein CBU_0870; &AE016828_758(... 45 0.002
CP001096_2882(CP001096|pid:none) Rhodopseudomonas palustris TIE-... 45 0.002
BA000040_4602(BA000040|pid:none) Bradyrhizobium japonicum USDA 1... 44 0.002
AK160175_1(AK160175|pid:none) Mus musculus adult male stomach cD... 44 0.003
CP000489_931(CP000489|pid:none) Paracoccus denitrificans PD1222 ... 43 0.007
BX897700_567(BX897700|pid:none) Bartonella quintana str. Toulous... 43 0.007
CP000269_1510(CP000269|pid:none) Janthinobacterium sp. Marseille... 42 0.009
CP001562_932(CP001562|pid:none) Bartonella grahamii as4aup, comp... 42 0.012
CU234118_3567(CU234118|pid:none) Bradyrhizobium sp. ORS278,compl... 42 0.015
(Q7MHM8) RecName: Full=UPF0350 protein VV2841; &BA000037_2841(B... 42 0.015
CP000304_1207(CP000304|pid:none) Pseudomonas stutzeri A1501, com... 42 0.015
(Q6D960) RecName: Full=UPF0350 protein ECA0759; &BX950851_749(B... 41 0.020
(Q9KPA2) RecName: Full=UPF0350 protein VC_2471; &AE003852_2435(... 41 0.020
BX897699_856(BX897699|pid:none) Bartonella henselae strain Houst... 41 0.020
AM260525_1063(AM260525|pid:none) Bartonella tribocorum CIP 10547... 41 0.026
FM178379_2533(FM178379|pid:none) Aliivibrio salmonicida LFI1238 ... 40 0.044
(Q4KGR0) RecName: Full=UPF0350 protein PFL_1445; &CP000076_1421... 40 0.044
(Q7N1C1) RecName: Full=UPF0350 protein plu3555; &BX571871_17(BX... 40 0.044
(Q57K69) RecName: Full=UPF0350 protein ygfY; &(Q5PJF5) RecName:... 40 0.058
CP000285_2137(CP000285|pid:none) Chromohalobacter salexigens DSM... 40 0.058
(Q87LM9) RecName: Full=UPF0350 protein VP2582; &BA000031_2582(B... 39 0.076
(Q5R0Z7) RecName: Full=UPF0350 protein IL0819; &AE017340_815(AE... 39 0.076
CP000789_3420(CP000789|pid:none) Vibrio harveyi ATCC BAA-1116 ch... 39 0.076
FP236842_2934(FP236842|pid:none) Erwinia pyrifoliae strain Ep1/9... 39 0.099
EU953843_1(EU953843|pid:none) Zea mays clone 1447532 unknown mRNA. 39 0.13
CP001139_2123(CP001139|pid:none) Vibrio fischeri MJ11 chromosome... 39 0.13
CP000510_62(CP000510|pid:none) Psychromonas ingrahamii 37, compl... 39 0.13
(P64559) RecName: Full=UPF0350 protein ygfY; &(P64560) RecName:... 38 0.17
CP000934_2155(CP000934|pid:none) Cellvibrio japonicus Ueda107, c... 38 0.17
(Q6LMR2) RecName: Full=UPF0350 protein PBPRA3099; &CR378673_46(... 38 0.17
CP000555_2160(CP000555|pid:none) Methylibium petroleiphilum PM1,... 38 0.17
(Q5E305) RecName: Full=UPF0350 protein VF_2096; &CP000020_2123(... 38 0.17
(Q7VPK3) RecName: Full=UPF0350 protein HD_0065; &AE017143_53(AE... 38 0.22
CP000103_853(CP000103|pid:none) Nitrosospira multiformis ATCC 25... 38 0.22
FM954972_2493(FM954972|pid:none) Vibrio splendidus LGP32 chromos... 38 0.22
CP000644_3246(CP000644|pid:none) Aeromonas salmonicida subsp. sa... 37 0.29
CP000282_2250(CP000282|pid:none) Saccharophagus degradans 2-40, ... 37 0.29
CP001655_3348(CP001655|pid:none) Dickeya zeae Ech1591, complete ... 37 0.29
AM167904_1181(AM167904|pid:none) Bordetella avium 197N complete ... 37 0.29
CP001177_4725(CP001177|pid:none) Bacillus cereus AH187, complete... 37 0.37
CT573326_3989(CT573326|pid:none) Pseudomonas entomophila str. L4... 37 0.37
CP001392_2236(CP001392|pid:none) Diaphorobacter sp. TPSY, comple... 37 0.37
CP000227_4498(CP000227|pid:none) Bacillus cereus Q1, complete ge... 37 0.37
(Q9I5G9) RecName: Full=UPF0350 protein PA0760; &AE004091_761(AE... 37 0.49
CP001321_1193(CP001321|pid:none) Haemophilus parasuis SH0165, co... 37 0.49
CP000447_2915(CP000447|pid:none) Shewanella frigidimarina NCIMB ... 37 0.49
(Q48EU3) RecName: Full=UPF0350 protein PSPPH_3958; &(Q87XF1) Re... 37 0.49
CP001407_4723(CP001407|pid:none) Bacillus cereus 03BB102, comple... 37 0.49
CP000949_1063(CP000949|pid:none) Pseudomonas putida W619, comple... 36 0.64
CP000539_2682(CP000539|pid:none) Acidovorax sp. JS42, complete g... 36 0.64
CP000512_2160(CP000512|pid:none) Acidovorax citrulli AAC00-1, co... 36 0.64
AM942759_1996(AM942759|pid:none) Proteus mirabilis strain HI4320... 36 0.64
AE017194_4905(AE017194|pid:none) Bacillus cereus ATCC 10987, com... 36 0.64
CP000680_1454(CP000680|pid:none) Pseudomonas mendocina ymp, comp... 36 0.64
CP000615_1078(CP000615|pid:none) Burkholderia vietnamiensis G4 c... 36 0.84
AE017225_4634(AE017225|pid:none) Bacillus anthracis str. Sterne,... 36 0.84
CP000094_1357(CP000094|pid:none) Pseudomonas fluorescens Pf0-1, ... 36 0.84
CP001654_3248(CP001654|pid:none) Dickeya dadantii Ech703, comple... 36 0.84
AE016827_2227(AE016827|pid:none) Mannheimia succiniciproducens M... 36 0.84
(Q65QC6) UPF0350 protein MS2227. 36 0.84
(Q88MZ4) RecName: Full=UPF0350 protein PP_1424; &AE015451_1412(... 36 0.84
CP000514_2235(CP000514|pid:none) Marinobacter aquaeolei VT8, com... 35 1.1
CP001283_4811(CP001283|pid:none) Bacillus cereus AH820, complete... 35 1.4
CP000462_762(CP000462|pid:none) Aeromonas hydrophila subsp. hydr... 35 1.4
CP000001_4495(CP000001|pid:none) Bacillus cereus E33L, complete ... 35 1.4
AE016825_1069(AE016825|pid:none) Chromobacterium violaceum ATCC ... 35 1.4
CP000880_4421(CP000880|pid:none) Salmonella enterica subsp. ariz... 35 1.9
CP000507_866(CP000507|pid:none) Shewanella amazonensis SB2B, com... 35 1.9
CP000316_3542(CP000316|pid:none) Polaromonas sp. JS666, complete... 35 1.9
CP001053_2770(CP001053|pid:none) Burkholderia phytofirmans PsJN ... 35 1.9
CP000749_1083(CP000749|pid:none) Marinomonas sp. MWYL1, complete... 34 2.4
CP000821_1137(CP000821|pid:none) Shewanella sediminis HAW-EB3, c... 34 2.4
CP000826_3883(CP000826|pid:none) Serratia proteamaculans 568, co... 34 2.4
CP000441_96(CP000441|pid:none) Burkholderia ambifaria AMMD chrom... 34 3.2
CP000388_1590(CP000388|pid:none) Pseudoalteromonas atlantica T6c... 33 4.1
(P44025) RecName: Full=UPF0350 protein HI0627; &G64010(G64010) ... 33 7.1
CP001068_2114(CP001068|pid:none) Ralstonia pickettii 12J chromos... 33 7.1
AE004969_842(AE004969|pid:none) Neisseria gonorrhoeae FA 1090, c... 33 7.1
AE002098_919(AE002098|pid:none) Neisseria meningitidis MC58, com... 33 7.1
CP001635_1414(CP001635|pid:none) Variovorax paradoxus S110 chrom... 33 7.1
AM260479_2558(AM260479|pid:none) Ralstonia eutropha H16 chromoso... 32 9.2
CP000379_1430(CP000379|pid:none) Burkholderia cenocepacia AU 105... 32 9.2
CP000011_1671(CP000011|pid:none) Burkholderia mallei ATCC 23344 ... 32 9.2
>FN357354_13(FN357354|pid:none) Schistosoma mansoni genome sequence
supercontig Smp_scaff000063.
Length = 161
Score = 76.6 bits (187), Expect = 4e-13
Identities = 37/81 (45%), Positives = 55/81 (67%), Gaps = 2/81 (2%)
Frame = +1
Query: 205 RKKLLYQSKERGMLENDLLLGSFATLNIHKLTESQLRDYNLLLQQPDP--DIFNWILKKA 378
R +LLYQS++RG LEN +LL +FA ++ +T QL Y+ L+ PD DI+ WI K
Sbjct: 69 RARLLYQSRKRGNLENGILLSTFAAKYLNSMTHEQLIAYDSLINLPDNEWDIYYWITKAK 128
Query: 379 EVPEEFETEVLKLV*NHCKND 441
E PE F+T++L+L+ HC+N+
Sbjct: 129 EAPEYFQTDILQLLQEHCQNN 149
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3268448
Number of Hits to DB: 398,731,104
Number of extensions: 4565938
Number of successful extensions: 12414
Number of sequences better than 10.0: 159
Number of HSP's gapped: 12401
Number of HSP's successfully gapped: 159
Length of query: 189
Length of database: 1,061,185,681
Length adjustment: 121
Effective length of query: 68
Effective length of database: 665,703,473
Effective search space: 45267836164
Effective search space used: 45267836164
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 30 (16.2 bits)
|
| PSORT |
|
| VS (DIR, S) |
0 |
| VH (FL, L) |
0 |
| VF (FL, S) |
0 |
| AH (FL, L) |
0 |
| AF (FL, S) |
0 |
| SL (DIR, L) |
0 |
| SS (DIR, S) |
2 |
| SH (FL, L) |
0 |
| SF (FL, S) |
0 |
| CH (FL, L) |
0 |
| CF (FL, S) |
0 |
| FCL (DIR, L) |
0 |
| FC (DIR, S) |
0 |
| FC-IC (SUB) |
0 |