Contig-U04576-1
Contig ID Contig-U04576-1
Contig update 2001. 8.29
Contig sequence
>Contig-U04576-1 (Contig-U04576-1Q) /CSM_Contig/Contig-U04576-1Q.Seq.d
AAAAAAAAGGGGGGTAGTGAAAAAGGTCTTGGTATGGCAAAAGTATTATG
GTTATTCTATTTCTCAAAGTTTATTGAATTTATGGATACATTTTTTATGG
TTTTAAGAAAAAAAGATAGTCAAATTACTGTTTTACATGTATATCATCAT
TCTACAATGCCAATGTTATGGATTATGGGAATCTGGTATGCGGCCGGAGG
TGATAGCTATATTTCAGCATTAATCAATTCATTCATTCATACAGTTATGT
ACAGTTATTATGCATTATCATTATTTGGATTTAATATTTGGTGGAAGAAA
TATTTAACTCAATTGCAATTAATTCAATTTGCTATGAACCTAATTTTTTC
AATGTGGTCTTTATATAATGATTGCAAATTCATTAAATGGATGCATTGGG
GTATGATTATATATATGATTAGTTTCTTATTCTTATTTGGTGCATTCTAT
AAAAGAAGTTATTCCCAACCAAAGAAATCAACAAAGAAAATTCAATAAAA
AAAAATAAAATAAAAAATAAATAAAATAAAAATATTTAAGGAAGAATAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Gap no gap
Contig length 595
Chromosome number (1..6, M) 1
Chromosome length 4919822
Start point 4612933
End point 4613486
Strand (PLUS/MINUS) PLUS
Number of clones 3
Number of EST 3
Link to clone list U04576
List of clone(s)

est1=SSK212Z,1,574
est2=SSK313Z,131,596
est3=SSB567Z,153,556
Translated Amino Acid sequence
KKKGGSEKGLGMAKVLWLFYFSKFIEFMDTFFMVLRKKDSQITVLHVYHHSTMPMLWIMG
IWYAAGGDSYISALINSFIHTVMYSYYALSLFGFNIWWKKYLTQLQLIQFAMNLIFSMWS
LYNDCKFIKWMHWGMIIYMISFLFLFGAFYKRSYSQPKKSTKKIQ*kkik*kinkikifk
ee*kkkkkkkkkkkkkkk


Translated Amino Acid sequence (All Frames)
Frame A:
KKKGGSEKGLGMAKVLWLFYFSKFIEFMDTFFMVLRKKDSQITVLHVYHHSTMPMLWIMG
IWYAAGGDSYISALINSFIHTVMYSYYALSLFGFNIWWKKYLTQLQLIQFAMNLIFSMWS
LYNDCKFIKWMHWGMIIYMISFLFLFGAFYKRSYSQPKKSTKKIQ*kkik*kinkikifk
ee*kkkkkkkkkkkkkkk


Frame B:
kkrgvvkkvlvwqkyygysisqsllnlwihflwf*ekkivkllfymyiiilqcqcyglwe
sgmrpeviaifqh*sihsfiqlctvimhyhyldlifggrni*lncn*fnll*t*ffqcgl
yimianslngcigv*lyi*lvsysylvhsikevipnqrnqqrkfnkkk*nkk*ik*kylr
knkkkkkkkkkkkkkkkk


Frame C:
kkgg**krswygksimvilflkvy*iygyifygfkkkr*snycftcissfynanvmdygn
lvcgrr**lyfsinqfihsysyvqllciiiiwi*ylveeifnsiainsicyepnffnvvf
i**lqih*mdalgydyiyd*fliliwcil*kklfptkeinkensikknkiknk*nkni*g
rikkkkkkkkkkkkkkk


own update 2004. 6.10
Homology vs CSM-cDNA
Query= Contig-U04576-1 (Contig-U04576-1Q)
/CSM_Contig/Contig-U04576-1Q.Seq.d
(595 letters)

Database: CSM
6905 sequences; 5,674,871 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U04576-1 (Contig-U04576-1Q) /CSM_Contig/Conti... 906 0.0
Contig-U14449-1 (Contig-U14449-1Q) /CSM_Contig/Conti... 34 0.16
Contig-U13402-1 (Contig-U13402-1Q) /CSM_Contig/Conti... 34 0.16
Contig-U11350-1 (Contig-U11350-1Q) /CSM_Contig/Conti... 34 0.16
Contig-U05340-1 (Contig-U05340-1Q) /CSM_Contig/Conti... 34 0.16
Contig-U14498-1 (Contig-U14498-1Q) /CSM_Contig/Conti... 32 0.65
Contig-U13023-1 (Contig-U13023-1Q) /CSM_Contig/Conti... 32 0.65
Contig-U12070-1 (Contig-U12070-1Q) /CSM_Contig/Conti... 32 0.65
Contig-U12060-1 (Contig-U12060-1Q) /CSM_Contig/Conti... 32 0.65

>Contig-U04576-1 (Contig-U04576-1Q) /CSM_Contig/Contig-U04576-1Q.Seq.d
Length = 595

Score = 906 bits (457), Expect = 0.0
Identities = 471/478 (98%)
Strand = Plus / Plus


Query: 9 ggggggtagtgaaaaaggtcttggtatggcaaaagtattatggttattctatttctcaaa 68
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9 ggggggtagtgaaaaaggtcttggtatggcaaaagtattatggttattctatttctcaaa 68


Query: 69 gtttattgaatttatggatacattttttatggttttaagnnnnnnngatagtcaaattac 128
||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 69 gtttattgaatttatggatacattttttatggttttaagaaaaaaagatagtcaaattac 128


Query: 129 tgttttacatgtatatcatcattctacaatgccaatgttatggattatgggaatctggta 188
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 tgttttacatgtatatcatcattctacaatgccaatgttatggattatgggaatctggta 188


Query: 189 tgcggccggaggtgatagctatatttcagcattaatcaattcattcattcatacagttat 248
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 tgcggccggaggtgatagctatatttcagcattaatcaattcattcattcatacagttat 248


Query: 249 gtacagttattatgcattatcattatttggatttaatatttggtggaagaaatatttaac 308
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 gtacagttattatgcattatcattatttggatttaatatttggtggaagaaatatttaac 308


Query: 309 tcaattgcaattaattcaatttgctatgaacctaattttttcaatgtggtctttatataa 368
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 tcaattgcaattaattcaatttgctatgaacctaattttttcaatgtggtctttatataa 368


Query: 369 tgattgcaaattcattaaatggatgcattggggtatgattatatatatgattagtttctt 428
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 tgattgcaaattcattaaatggatgcattggggtatgattatatatatgattagtttctt 428


Query: 429 attcttatttggtgcattctataaaagaagttattcccaaccaaagaaatcaacaaag 486
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 attcttatttggtgcattctataaaagaagttattcccaaccaaagaaatcaacaaag 486


>Contig-U14449-1 (Contig-U14449-1Q) /CSM_Contig/Contig-U14449-1Q.Seq.d
Length = 385

Score = 34.2 bits (17), Expect = 0.16
Identities = 17/17 (100%)
Strand = Plus / Plus


Query: 375 caaattcattaaatgga 391
|||||||||||||||||
Sbjct: 236 caaattcattaaatgga 252


>Contig-U13402-1 (Contig-U13402-1Q) /CSM_Contig/Contig-U13402-1Q.Seq.d
Length = 783

Score = 34.2 bits (17), Expect = 0.16
Identities = 17/17 (100%)
Strand = Plus / Minus


Query: 366 taatgattgcaaattca 382
|||||||||||||||||
Sbjct: 153 taatgattgcaaattca 137


Database: CSM
Posted date: Jun 9, 2004 7:35 PM
Number of letters in database: 5,674,871
Number of sequences in database: 6905

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6739
Number of Sequences: 6905
Number of extensions: 6739
Number of successful extensions: 766
Number of sequences better than 10.0: 84
length of query: 595
length of database: 5,674,871
effective HSP length: 16
effective length of query: 579
effective length of database: 5,564,391
effective search space: 3221782389
effective search space used: 3221782389
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2009. 6.24
Homology vs DNA
Query= Contig-U04576-1 (Contig-U04576-1Q) /CSM_Contig/Contig-U04576-1Q.Seq.d
(595 letters)

Database: ddbj_A
102,105,510 sequences; 101,790,757,118 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(C91291) Dictyostelium discoideum slug cDNA, clone SSK212. 737 0.0 2
(C91465) Dictyostelium discoideum slug cDNA, clone SSK313. 676 0.0 1
(AU037174) Dictyostelium discoideum slug cDNA, clone SSB567. 646 0.0 1
(DW012009) w15l10_M13F Myzus persicae, tobacco lineage, whol... 50 1e-04 2
(DW014978) w9o11_M13F Myzus persicae, tobacco lineage, whole... 50 1e-04 2
(DN316466) PL06023B2D03 cDNA from juvenile hermaphodites Sch... 56 3e-04 2
(AC206374) Pongo abelii clone CH253-267J24, WORKING DRAFT SE... 52 0.025 1
(AC206373) Pongo abelii clone CH253-199E18, WORKING DRAFT SE... 52 0.025 1
(EY312937) CAWX24675.fwd CAWX Helobdella robusta Primary Ear... 52 0.025 1
(EY312936) CAWX24675.rev CAWX Helobdella robusta Primary Ear... 52 0.025 1
(EY298326) CAWX13852.rev CAWX Helobdella robusta Primary Ear... 52 0.025 1
(EY294369) CAWX11644.rev CAWX Helobdella robusta Primary Ear... 52 0.025 1
(ES522266) BIG_AF_30085 Brine Shrimp embryos, 15 hours after... 52 0.025 1
(EW773443) ST020032A10D08 Normalized and subtracted western ... 38 0.078 2
(AP007512) Lotus japonicus genomic DNA, chromosome 4, clone:... 50 0.097 1
(AC173571) Bos taurus clone CH240-526G1, WORKING DRAFT SEQUE... 38 0.14 6
(AC096922) Homo sapiens chromosome 3 clone RP11-436J20, comp... 48 0.39 1
(DY891712) CeleSEQ8358 Cunninghamella elegans pBluescript (E... 48 0.39 1
(CT025850) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 40 0.54 4
(DV601609) EST1204604 Glossina morsitans morsitans Fat body ... 42 0.56 2
(ES223860) MpHnorm_ag4_D16 Myzus persicae, tobacco lineage, ... 44 0.61 2
(DV604140) EST1207136 Glossina morsitans morsitans Fat body ... 42 0.72 2
(DV605893) EST1208889 Glossina morsitans morsitans Fat body ... 42 0.74 2
(AC231989) Homo sapiens FOSMID clone ABC7-40658800E17 from c... 34 0.76 6
(AC190886) Zea mays chromosome 5 clone CH201-143N21; ZMMBBc0... 32 0.80 2
(AC197363) Zea mays chromosome 5 clone CH201-265B18; ZMMBBc0... 32 0.81 2
(AC201878) Zea mays chromosome 5 clone ZMMBBb-511L9; ZMMBBb0... 32 0.83 2
(DV605194) EST1208190 Glossina morsitans morsitans Fat body ... 42 0.84 2
(CT573499) Zebrafish DNA sequence from clone DKEYP-106G6 in ... 34 0.85 2
(DV608287) EST1211283 Glossina morsitans morsitans Fat body ... 42 0.87 2
(DV618069) EST1221065 Glossina morsitans morsitans Fat body ... 42 0.92 2
(AY512504) Danio rerio blue cone opsin gene, promoter region... 46 1.2 2
(AL138655) Arabidopsis thaliana DNA chromosome 3, BAC clone ... 38 1.2 4
(CT573282) Zebrafish DNA sequence from clone DKEY-245F22 in ... 46 1.5 1
(CT027835) Zebrafish DNA sequence from clone CH211-66E18 in ... 46 1.5 1
(CR956623) Zebrafish DNA sequence from clone CH211-112D19 in... 46 1.5 1
(AL844847) Zebrafish DNA sequence from clone DKEY-13A21 in l... 46 1.5 1
(AL731822) Mouse DNA sequence from clone RP23-105H6 on chrom... 46 1.5 1
(AC134951) Danio rerio strain Tue clone CH211-57I20, WORKING... 46 1.5 1
(FP067419) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 46 1.5 1
(CU062629) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 46 1.5 1
(CR931805) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 46 1.5 1
(AC180155) Strongylocentrotus purpuratus clone R3-3003F4, WO... 46 1.5 1
(AC178574) Strongylocentrotus purpuratus clone R3-3027D15, W... 46 1.5 1
(AC023610) Mus musculus clone CT7-510C4, WORKING DRAFT SEQUE... 46 1.5 1
(ER515065) 1093015496987 Global-Ocean-Sampling_GS-35-01-01-1... 46 1.5 1
(ER492964) 1093015333895 Global-Ocean-Sampling_GS-35-01-01-1... 46 1.5 1
(EK303146) 1095462371856 Global-Ocean-Sampling_GS-31-01-01-1... 46 1.5 1
(EJ587023) 1092961023683 Global-Ocean-Sampling_GS-29-01-01-1... 46 1.5 1
(EJ525211) 1092955180880 Global-Ocean-Sampling_GS-29-01-01-1... 46 1.5 1
(DX495141) Cpl37014 Papaya Genomic DNA BAC Library Carica pa... 46 1.5 1
(ES599711) BPE00000524 Buddenbrockia plumatellae SMART cDNA ... 46 1.5 1
(AX572986) Sequence 16 from Patent WO02062975. 34 1.6 2
(AX572979) Sequence 9 from Patent WO02062975. 34 1.6 2
(AI815960) au44e04.y1 Schneider fetal brain 00004 Homo sapie... 34 1.6 2
(DA218507) Homo sapiens cDNA clone BRAWH3009702, 5' end, mRN... 34 2.0 2
(AC206811) Nomascus leucogenys leucogenys clone CH271-444M17... 40 2.1 3
(AC174735) Strongylocentrotus purpuratus clone R3-1115L3, WO... 36 2.1 5
(DA854735) Homo sapiens cDNA clone PLACE7005269, 5' end, mRN... 34 2.2 2
(DA230401) Homo sapiens cDNA clone BRAWH3025288, 5' end, mRN... 34 2.5 2
(DR001459) TC113934 Human fetal brain, large insert, pCMV ex... 34 2.7 2
(DQ049040) Pan troglodytes ELOVL2 gene, VIRTUAL TRANSCRIPT, ... 34 2.8 2
(DQ049039) Homo sapiens ELOVL2 gene, VIRTUAL TRANSCRIPT, par... 34 2.8 2
(CT027807) Zebrafish DNA sequence from clone CH73-165P16 in ... 42 2.9 4
(AC144723) Medicago truncatula clone mth2-7h1, complete sequ... 32 3.0 2
(EY284522) 1106514253717 03BABOON-C-01-1-3KB Papio anubis cD... 34 3.1 2
(CU207236) M.truncatula DNA sequence from clone MTH2-56B11 o... 32 3.1 2
(AC145811) Oryza sativa Japonica Group chromosome 3 clone OS... 38 3.2 3
(BD448823) Preventing and treating agent for cancer. 34 3.2 2
(BD418125) Preventing and treating agent for cancer. 34 3.2 2
(CS065928) Sequence 16 from Patent WO2005030985. 34 3.2 2
(AX572975) Sequence 5 from Patent WO02062975. 34 3.2 2
(AX572971) Sequence 1 from Patent WO02062975. 34 3.2 2
(CQ726323) Sequence 12257 from Patent WO02068579. 34 3.3 2
(CG936781) MBEMV40TR mth2 Medicago truncatula genomic clone ... 36 3.4 2
(CR762406) Zebrafish DNA sequence from clone DKEY-13D23 in l... 36 3.6 3
(AC078813) Homo sapiens 3q BAC RP11-149B11 (Roswell Park Can... 42 3.7 3
(FP102081) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 3.9 3
(CG919874) MBEKW57TR mth2 Medicago truncatula genomic clone ... 32 3.9 2
(CG965668) MBEMT90TR mth2 Medicago truncatula genomic clone ... 32 3.9 2
(CR971204) mth4-18A16RM1 BAC end, cultivar Jemalong A17 of M... 32 4.0 2
(BZ286562) Mt_H2M02_021A19R MtH2 Medicago truncatula BAC lib... 32 4.0 2
(CU687434) Synthetic construct Homo sapiens gateway clone IM... 34 4.6 2
(EF173373) Aedes aegypti clone BAC ND41B18, complete sequence. 42 4.7 3
(AC149794) Aedes aegypti clone NDL.41B18, *** SEQUENCING IN ... 42 4.7 3
(AC114292) Homo sapiens chromosome 5 clone CTD-3203K22, WORK... 32 4.7 6
(AP001206) Homo sapiens genomic DNA, chromosome 8q23, clone:... 44 4.8 4
(AC177772) Strongylocentrotus purpuratus clone R3-1004M23, W... 38 5.3 2
(BX537104) Zebrafish DNA sequence from clone DKEY-80G18 in l... 36 5.8 5
(AC022033) Homo sapiens chromosome 8, clone RP11-214C21, com... 44 5.9 4
(CU571310) Zebrafish DNA sequence from clone CH211-34C18 in ... 44 6.0 1
(CT963086) Zebrafish DNA sequence from clone CH73-77D24 in l... 44 6.0 1
(CT009592) Zebrafish DNA sequence from clone CH73-338A11 in ... 44 6.0 1
(CR931780) Zebrafish DNA sequence from clone DKEY-50D16 in l... 44 6.0 1
(CR391908) Zebrafish DNA sequence from clone DKEY-225E11 in ... 44 6.0 1
(BX957337) Zebrafish DNA sequence from clone DKEY-211E8 in l... 44 6.0 1
(BX927279) Zebrafish DNA sequence from clone CH211-101N16 in... 44 6.0 1
(BX248117) Zebrafish DNA sequence from clone CH211-226D5. 44 6.0 1
(BX248111) Zebrafish DNA sequence from clone DKEY-22L11 in l... 44 6.0 1
(GF024249) pRRL2:Newb:20080411:403926 USMARC Pig Breed SNP D... 44 6.0 1
(AC165074) Mus musculus BAC clone RP24-501F1 from chromosome... 44 6.0 1
(AC116419) Mus musculus chromosome 1, clone RP24-89C10, comp... 44 6.0 1
(AM465639) Vitis vinifera contig VV78X057029.5, whole genome... 44 6.0 1
(AC209584) Solanum lycopersicum DNA sequence from clone LE_H... 44 6.0 1
(BD034042) Sequence tag and encoded human protein. 44 6.0 1
(AX898509) Sequence 14372 from Patent EP1033401. 44 6.0 1
(GM674920) Sequence 43 from Patent WO2008081039. 44 6.0 1
(AR959903) Sequence 14372 from patent US 7115416. 44 6.0 1
(AR734303) Sequence 14372 from patent US 6783961. 44 6.0 1
(AK174182) Ciona intestinalis cDNA, clone:cibd042j04, full i... 44 6.0 1
(AL121944) Human DNA sequence from clone RP1-313I6 on chromo... 44 6.0 1
(AC109356) Homo sapiens BAC clone RP11-631I16 from 4, comple... 44 6.0 1
(AC034191) Homo sapiens chromosome 3 clone RP11-344L9 map 3p... 44 6.0 1
(AC023483) Homo sapiens chromosome 3 clone RP11-453A3 map 3p... 44 6.0 1
(AC147491) Otolemur garnettii clone CH256-355F7, WORKING DRA... 44 6.0 1
(AC146644) Otolemur garnettii clone CH256-409L22, WORKING DR... 44 6.0 1
(AC142067) Rattus norvegicus clone CH230-40L2, WORKING DRAFT... 44 6.0 1
(AC141344) Rattus norvegicus clone CH230-491D4, WORKING DRAF... 44 6.0 1
(AC101302) Mus musculus clone RP23-103P7, LOW-PASS SEQUENCE ... 44 6.0 1
(AC025941) Homo sapiens chromosome 6 clone RP11-635O11 map 6... 44 6.0 1
(CU302235) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 44 6.0 1
(AC216367) Solanum lycopersicum chromosome 12 clone SL_EcoRI... 44 6.0 1
(AC016092) Homo sapiens clone RP11-25F1, WORKING DRAFT SEQUE... 44 6.0 1
(AC013541) Homo sapiens chromosome 4 clone RP11-412O12 map 4... 44 6.0 1
(AC011571) Homo sapiens clone RP11-12E10, WORKING DRAFT SEQU... 44 6.0 1
(FI179849) MUGQ_CH252P144F13Sp6_CN155_059 CHORI-252 Vervet M... 44 6.0 1
(FH733666) CHO_OF5123xj13r1.ab1 CHO_OF5 Nicotiana tabacum ge... 44 6.0 1
(FH688332) CHO_OF5026xh24r1.ab1 CHO_OF5 Nicotiana tabacum ge... 44 6.0 1
(ER594971) 1093016217658 Global-Ocean-Sampling_GS-36-01-01-2... 44 6.0 1
(EI002602) MUGQ_CH252P173I09T7_CN228_039 CHORI-252 Vervet Mo... 44 6.0 1
(AL347054) Tetraodon nigroviridis genome survey sequence T3 ... 44 6.0 1
(AL192315) Tetraodon nigroviridis genome survey sequence T7 ... 44 6.0 1
(CU793141) A BAC library has been constructed from PN40024 g... 44 6.0 1
(CE643810) tigr-gss-dog-17000366887870 Dog Library Canis lup... 44 6.0 1
(CE443606) tigr-gss-dog-17000336263621 Dog Library Canis lup... 44 6.0 1
(EG961151) AU_Ich_014C_C07 Whole organism normalized cDNA li... 44 6.0 1
(EB863501) 5873178 ZF03 Danio rerio cDNA clone 2335246, mRNA... 44 6.0 1
(AL926462) Danio rerio EST sequence, clone 170-H07-2. 44 6.0 1
(CJ487314) Macaca fascicularis mRNA, clone: QtsA-14975, 5' e... 44 6.0 1
(CJ401370) Molgula tectiformis cDNA, gonad clone:mtgd014o04,... 44 6.0 1
(CJ365813) Molgula tectiformis cDNA, cleaving embryo clone:m... 44 6.0 1
(CJ364533) Molgula tectiformis cDNA, cleaving embryo clone:m... 44 6.0 1
(CJ361713) Molgula tectiformis cDNA, cleaving embryo clone:m... 44 6.0 1
(CJ355321) Molgula tectiformis cDNA, cleaving embryo clone:m... 44 6.0 1
(CJ354074) Molgula tectiformis cDNA, cleaving embryo clone:m... 44 6.0 1
(CJ354067) Molgula tectiformis cDNA, cleaving embryo clone:m... 44 6.0 1
(CJ351274) Molgula tectiformis cDNA, cleaving embryo clone:m... 44 6.0 1
(BW500312) Ciona intestinalis cDNA, clone:cima052k21, 3'end,... 44 6.0 1
(BW485938) Ciona intestinalis cDNA, clone:cima052k21, 5'end,... 44 6.0 1
(BW181874) Ciona intestinalis cDNA, clone:rciht024a17, 3' en... 44 6.0 1
(BW040112) Ciona intestinalis cDNA, clone:cibd042j04, 5' end... 44 6.0 1
(BW011585) Ciona intestinalis cDNA, clone:rcibd042j04, 3' en... 44 6.0 1
(FG001235) CBWU116599.g1 Yutaka Satou unpublished cDNA libra... 44 6.0 1
(FG000486) CBWU116057.g1 Yutaka Satou unpublished cDNA libra... 44 6.0 1
(FF787981) XABT84775.rev Gateway compatible cien cDNA librar... 44 6.0 1
(ES835772) UFL_012_70 Cotton fiber 0-10 day post anthesis Go... 44 6.0 1
(AV863463) Ciona intestinalis cDNA, clone:rcieg48m18, 3' end... 44 6.0 1
(AM398566) Bacillus megaterium degS/U operon (degSU genes), ... 44 6.0 1
(CU464022) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 38 6.6 2
(CU634021) Zebrafish DNA sequence from clone CH73-96B22 in l... 38 7.0 5
(AC008718) Homo sapiens chromosome 5 clone CTB-87P9, WORKING... 38 7.3 3
(CR388139) Zebrafish DNA sequence *** SEQUENCING CANCELLED *... 36 7.3 5
(EA063882) Sequence 1707 from patent US 7171311. 34 7.8 2
(DD416372) Diagnosis and Prognosis of Breast Cancer Patients. 34 7.8 2
(DD139868) Methods of Diagnosis of Breast Cancer, Compositio... 34 7.8 2
(DD131121) Diagnosis and Prognosis of Breast Cancer Patients. 34 7.8 2
(DD117873) Genes Highly Expressed in Cancers. 34 7.8 2
(CS065927) Sequence 15 from Patent WO2005030985. 34 7.8 2
(AX829198) Sequence 91 from Patent WO02059377. 34 7.8 2
(AX572977) Sequence 7 from Patent WO02062975. 34 7.8 2
(AX572976) Sequence 6 from Patent WO02062975. 34 7.8 2
(AK000341) Homo sapiens cDNA FLJ20334 fis, clone HEP11362. 34 7.8 2
(AC116315) Homo sapiens chromosome 1 clone RP11-211J9, compl... 36 8.3 5
(FP236503) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 38 8.3 3
(AC184625) Strongylocentrotus purpuratus clone R3-3023C20, W... 38 8.6 3
(CT963074) M.truncatula DNA sequence from clone MTH2-138E10 ... 36 9.0 3

>(C91291) Dictyostelium discoideum slug cDNA, clone SSK212.
Length = 574

Score = 737 bits (372), Expect(2) = 0.0
Identities = 372/372 (100%)
Strand = Plus / Plus


Query: 115 gatagtcaaattactgttttacatgtatatcatcattctacaatgccaatgttatggatt 174
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 115 gatagtcaaattactgttttacatgtatatcatcattctacaatgccaatgttatggatt 174


Query: 175 atgggaatctggtatgcggccggaggtgatagctatatttcagcattaatcaattcattc 234
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 175 atgggaatctggtatgcggccggaggtgatagctatatttcagcattaatcaattcattc 234


Query: 235 attcatacagttatgtacagttattatgcattatcattatttggatttaatatttggtgg 294
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 235 attcatacagttatgtacagttattatgcattatcattatttggatttaatatttggtgg 294


Query: 295 aagaaatatttaactcaattgcaattaattcaatttgctatgaacctaattttttcaatg 354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 aagaaatatttaactcaattgcaattaattcaatttgctatgaacctaattttttcaatg 354


Query: 355 tggtctttatataatgattgcaaattcattaaatggatgcattggggtatgattatatat 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 tggtctttatataatgattgcaaattcattaaatggatgcattggggtatgattatatat 414


Query: 415 atgattagtttcttattcttatttggtgcattctataaaagaagttattcccaaccaaag 474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 atgattagtttcttattcttatttggtgcattctataaaagaagttattcccaaccaaag 474


Query: 475 aaatcaacaaag 486
||||||||||||
Sbjct: 475 aaatcaacaaag 486

Score = 196 bits (99), Expect(2) = 0.0
Identities = 99/99 (100%)
Strand = Plus / Plus


Query: 9 ggggggtagtgaaaaaggtcttggtatggcaaaagtattatggttattctatttctcaaa 68
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9 ggggggtagtgaaaaaggtcttggtatggcaaaagtattatggttattctatttctcaaa 68


Query: 69 gtttattgaatttatggatacattttttatggttttaag 107
|||||||||||||||||||||||||||||||||||||||
Sbjct: 69 gtttattgaatttatggatacattttttatggttttaag 107

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 102105510
Number of Hits to DB: 657,345,917
Number of extensions: 40892555
Number of successful extensions: 3972782
Number of sequences better than 10.0: 178
Length of query: 595
Length of database: 101,790,757,118
Length adjustment: 23
Effective length of query: 572
Effective length of database: 99,442,330,388
Effective search space: 56881012981936
Effective search space used: 56881012981936
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)

protein update 2009. 7.30
Homology vs Protein
Query= Contig-U04576-1 (Contig-U04576-1Q) /CSM_Contig/Contig-U04576-1Q.Seq.d
(595 letters)

Database: nrp_A
3,268,448 sequences; 1,061,185,681 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

(Q9EQC4) RecName: Full=Elongation of very long chain fatty acids... 176 4e-43
AY605099_1(AY605099|pid:none) Ciona intestinalis polyunsaturated... 160 3e-38
BC059658_1(BC059658|pid:none) Danio rerio zgc:73341, mRNA (cDNA ... 160 3e-38
AY318871_68(AY318871|pid:none) Canarypox virus strain ATCC VR-11... 157 3e-37
BC152203_1(BC152203|pid:none) Danio rerio elongation of very lon... 155 6e-37
CT025742_10(CT025742|pid:none) Zebrafish DNA sequence from clone... 152 9e-36
BC154147_1(BC154147|pid:none) Danio rerio zgc:112263, mRNA (cDNA... 151 2e-35
(A1L3X0) RecName: Full=Elongation of very long chain fatty acids... 145 6e-34
(Q5M8U1) RecName: Full=Elongation of very long chain fatty acids... 145 6e-34
(Q8BHI7) RecName: Full=Elongation of very long chain fatty acids... 145 8e-34
AK045274_1(AK045274|pid:none) Mus musculus 9.5 days embryo parth... 145 8e-34
AK088153_1(AK088153|pid:none) Mus musculus 2 days neonate thymus... 145 8e-34
AY660880_1(AY660880|pid:none) Clarias gariepinus fatty acid elon... 144 1e-33
(Q2KJD9) RecName: Full=Elongation of very long chain fatty acids... 144 1e-33
(Q920L7) RecName: Full=Elongation of very long chain fatty acids... 144 1e-33
BC100190_1(BC100190|pid:none) Xenopus laevis hypothetical protei... 144 2e-33
EU747336_1(EU747336|pid:none) Sus scrofa elongase mRNA, partial ... 143 3e-33
FJ156735_1(FJ156735|pid:none) Thunnus maccoyii fatty acid elonga... 143 3e-33
FJ440239_1(FJ440239|pid:none) Rachycentron canadum polyunsaturat... 143 4e-33
FJ952143_1(FJ952143|pid:none) Nibea mitsukurii polyunsaturated f... 142 7e-33
BC136017_1(BC136017|pid:none) Xenopus tropicalis elongation of v... 142 7e-33
AY660881_1(AY660881|pid:none) Gadus morhua fatty acid elongase m... 142 9e-33
AK302948_1(AK302948|pid:none) Homo sapiens cDNA FLJ52813 complet... 141 1e-32
(Q9NYP7) RecName: Full=Elongation of very long chain fatty acids... 141 1e-32
AY660879_1(AY660879|pid:none) Sparus aurata fatty acid elongase ... 141 1e-32
(Q32NI8) RecName: Full=Elongation of very long chain fatty acids... 140 2e-32
DQ439986_1(DQ439986|pid:none) Aedes aegypti clone AE-11159 fatty... 139 5e-32
BC155281_1(BC155281|pid:none) Danio rerio ELOVL family member 7,... 139 5e-32
AF532782_1(AF532782|pid:none) Danio rerio polyunsaturated fatty ... 139 6e-32
AE014296_2020(AE014296|pid:none) Drosophila melanogaster chromos... 138 1e-31
AE014296_2019(AE014296|pid:none) Drosophila melanogaster chromos... 138 1e-31
AY170326_1(AY170326|pid:none) Oreochromis niloticus putative pol... 138 1e-31
DQ067616_1(DQ067616|pid:none) Oncorhynchus masou putative polyun... 137 2e-31
DQ216939_1(DQ216939|pid:none) Taeniopygia guttata clone 0064P001... 137 2e-31
BC060809_1(BC060809|pid:none) Homo sapiens elongation of very lo... 137 2e-31
BC080108_1(BC080108|pid:none) Xenopus laevis MGC84669 protein, m... 137 2e-31
AY605100_1(AY605100|pid:none) Oncorhynchus mykiss polyunsaturate... 137 3e-31
BC155205_1(BC155205|pid:none) Danio rerio elongation of very lon... 136 5e-31
BC114786_1(BC114786|pid:none) Bos taurus elongation of very long... 136 5e-31
BC049330_1(BC049330|pid:none) Danio rerio elongation of very lon... 136 5e-31
(Q4R516) RecName: Full=Elongation of very long chain fatty acids... 136 5e-31
BC051608_1(BC051608|pid:none) Danio rerio ELOVL family member 7,... 135 7e-31
AK014803_1(AK014803|pid:none) Mus musculus adult male testis cDN... 135 1e-30
BC072173_1(BC072173|pid:none) Xenopus laevis hypothetical protei... 135 1e-30
AB238914_1(AB238914|pid:none) Physcomitrella patens PSE1 gene fo... 134 1e-30
BC044967_1(BC044967|pid:none) Xenopus laevis hypothetical protei... 134 3e-30
FJ237532_1(FJ237532|pid:none) Salmo salar polyunsaturated fatty ... 134 3e-30
AY605098_1(AY605098|pid:none) Xenopus laevis polyunsaturated fat... 134 3e-30
AF336793_1(AF336793|pid:none) Homo sapiens SSC1/ELOVL1 mRNA, com... 133 4e-30
AK001653_1(AK001653|pid:none) Homo sapiens cDNA FLJ10791 fis, cl... 133 4e-30
(Q9BW60) RecName: Full=Elongation of very long chain fatty acids... 133 4e-30
AK037162_1(AK037162|pid:none) Mus musculus 6 days neonate skin c... 132 6e-30
AF465520_1(AF465520|pid:none) Scophthalmus maximus polyunsaturat... 132 6e-30
AE014297_100(AE014297|pid:none) Drosophila melanogaster chromoso... 132 1e-29
EF055875_1(EF055875|pid:none) Marsupenaeus japonicus elongation ... 132 1e-29
AK222498_1(AK222498|pid:none) Homo sapiens mRNA for elongation o... 132 1e-29
AB264656_1(AB264656|pid:none) Papilio xuthus mRNA for similar to... 131 1e-29
EF486525_1(EF486525|pid:none) Pavlova viridis C20 elongase (ELKJ... 131 1e-29
GM840770_1(GM840770|pid:none) Sequence 410 from Patent WO2008124... 131 2e-29
GM840543_1(GM840543|pid:none) Sequence 183 from Patent WO2008124... 131 2e-29
AK298163_1(AK298163|pid:none) Homo sapiens cDNA FLJ51720 complet... 130 2e-29
BC095785_1(BC095785|pid:none) Danio rerio elongation of very lon... 129 5e-29
BC115092_1(BC115092|pid:none) Danio rerio elongation of very lon... 129 5e-29
AY591338_1(AY591338|pid:none) Thalassiosira pseudonana polyunsat... 129 6e-29
CS020131_1(CS020131|pid:none) Sequence 85 from Patent WO20050123... 129 6e-29
CS020107_1(CS020107|pid:none) Sequence 61 from Patent WO20050123... 129 6e-29
CP001329_254(CP001329|pid:none) Micromonas sp. RCC299 chromosome... 129 8e-29
AF206662_1(AF206662|pid:none) Mortierella alpina long chain poly... 129 8e-29
CP000582_340(CP000582|pid:none) Ostreococcus lucimarinus CCE9901... 128 1e-28
CR760398_1(CR760398|pid:none) Xenopus tropicalis finished cDNA, ... 128 1e-28
AY630573_1(AY630573|pid:none) Pavlova sp. CCMP459 C20-polyunsatu... 127 3e-28
BT077152_1(BT077152|pid:none) Caligus rogercresseyi clone crog-e... 127 3e-28
AE014297_3303(AE014297|pid:none) Drosophila melanogaster chromos... 126 5e-28
BC054983_1(BC054983|pid:none) Xenopus laevis hypothetical protei... 125 9e-28
AK003743_1(AK003743|pid:none) Mus musculus 18-day embryo whole b... 125 9e-28
(Q9JLJ5) RecName: Full=Elongation of very long chain fatty acids... 125 9e-28
AF104033_1(AF104033|pid:none) Mus musculus MUEL protein mRNA, pa... 125 9e-28
AK341724_1(AK341724|pid:none) Acyrthosiphon pisum ACYPI007931 mR... 124 2e-27
FN357308_40(FN357308|pid:none) Schistosoma mansoni genome sequen... 124 3e-27
BC083417_1(BC083417|pid:none) Danio rerio elongation of very lon... 123 3e-27
AE014297_3312(AE014297|pid:none) Drosophila melanogaster chromos... 123 3e-27
BT077118_1(BT077118|pid:none) Caligus rogercresseyi clone crog-e... 123 4e-27
BT077312_1(BT077312|pid:none) Caligus rogercresseyi clone crog-e... 122 8e-27
AJ851805_1(AJ851805|pid:none) Gallus gallus mRNA for hypothetica... 120 2e-26
AX814556_1(AX814556|pid:none) Sequence 1 from Patent WO03064638.... 120 4e-26
BT076365_1(BT076365|pid:none) Caligus rogercresseyi clone crog-e... 119 6e-26
AY591335_1(AY591335|pid:none) Ostreococcus tauri polyunsaturated... 117 2e-25
BT080790_1(BT080790|pid:none) Caligus clemensi clone ccle-evs-50... 117 3e-25
BT080978_1(BT080978|pid:none) Caligus clemensi clone ccle-evs-50... 115 7e-25
CS020179_1(CS020179|pid:none) Sequence 133 from Patent WO2005012... 114 2e-24
CS020177_1(CS020177|pid:none) Sequence 131 from Patent WO2005012... 114 2e-24
BT078466_1(BT078466|pid:none) Lepeophtheirus salmonis Pacific fo... 114 2e-24
AY591336_1(AY591336|pid:none) Ostreococcus tauri polyunsaturated... 114 3e-24
BX323588_5(BX323588|pid:none) Zebrafish DNA sequence from clone ... 114 3e-24
EF541114_1(EF541114|pid:none) Phaeodactylum tricornutum delta-6-... 114 3e-24
AY746355_1(AY746355|pid:none) Phaeodactylum tricornutum delta-6-... 114 3e-24
BT076206_1(BT076206|pid:none) Caligus rogercresseyi clone crog-e... 113 4e-24
BT080322_1(BT080322|pid:none) Caligus clemensi clone ccle-evs-51... 113 5e-24
AK342964_1(AK342964|pid:none) Acyrthosiphon pisum ACYPI003344 mR... 113 5e-24
CP001332_234(CP001332|pid:none) Micromonas sp. RCC299 chromosome... 112 6e-24
CR954209_255(CR954209|pid:none) Ostreococcus tauri strain OTTH05... 112 8e-24
CS020125_1(CS020125|pid:none) Sequence 79 from Patent WO20050123... 112 8e-24
AM494969_131(AM494969|pid:none) Leishmania braziliensis chromoso... 109 7e-23
BT078005_1(BT078005|pid:none) Lepeophtheirus salmonis Pacific fo... 108 1e-22
BT076352_1(BT076352|pid:none) Caligus rogercresseyi clone crog-e... 107 3e-22
AE013599_2923(AE013599|pid:none) Drosophila melanogaster chromos... 107 3e-22
FJ851689_1(FJ851689|pid:none) Parietochloris incisa isolate H430... 106 6e-22
FJ539086_1(FJ539086|pid:none) Parietochloris incisa delta-6 poly... 106 6e-22
AF151846_1(AF151846|pid:none) Homo sapiens CGI-88 protein mRNA, ... 105 1e-21
AB238912_1(AB238912|pid:none) Marchantia polymorpha MpELO2 gene ... 104 2e-21
FN357422_17(FN357422|pid:none) Schistosoma mansoni genome sequen... 101 1e-20
AE013599_2922(AE013599|pid:none) Drosophila melanogaster chromos... 101 1e-20
FN357317_24(FN357317|pid:none) Schistosoma mansoni genome sequen... 101 2e-20
AM502223_117(AM502223|pid:none) Leishmania infantum chromosome 5. 100 3e-20
CS020089_1(CS020089|pid:none) Sequence 43 from Patent WO20050123... 100 5e-20
AL844505_58(AL844505|pid:none) Plasmodium falciparum 3D7 chromos... 99 7e-20
EU846098_1(EU846098|pid:none) Myrmecia incisa polyunsaturated fa... 99 9e-20
AE014297_1081(AE014297|pid:none) Drosophila melanogaster chromos... 99 1e-19
GQ258117_1(GQ258117|pid:none) Monopterus albus polyunsaturated f... 98 2e-19
AE014297_1079(AE014297|pid:none) Drosophila melanogaster chromos... 98 2e-19
CR382128_803(CR382128|pid:none) Yarrowia lipolytica strain CLIB1... 97 3e-19
AE014297_1080(AE014297|pid:none) Drosophila melanogaster chromos... 97 3e-19
DQ517337_46(DQ517337|pid:none) Trichoplusia ni ascovirus 2c, com... 97 4e-19
EU570221_1(EU570221|pid:none) Channa striata polyunsaturated fat... 96 8e-19
DQ019418_1(DQ019418|pid:none) Xiphophorus hellerii liver polyuns... 96 1e-18
AM989988_4(AM989988|pid:none) Zygosaccharomyces rouxii strain CB... 95 1e-18
AE014297_3374(AE014297|pid:none) Drosophila melanogaster chromos... 95 2e-18
BT023370_1(BT023370|pid:none) Drosophila melanogaster IP10355 fu... 95 2e-18
DQ102382_1(DQ102382|pid:none) Symphysodon aequifasciata liver po... 94 4e-18
AY576803_1(AY576803|pid:none) Hortaea werneckii putative fatty a... 92 8e-18
AC159452_17(AC159452|pid:none) Trypanosoma brucei chromosome 5 c... 92 1e-17
AB270614_1(AB270614|pid:none) Pichia angusta HpELO2 gene for fat... 91 2e-17
CR382123_151(CR382123|pid:none) Kluyveromyces lactis strain NRRL... 91 2e-17
AE014297_3541(AE014297|pid:none) Drosophila melanogaster chromos... 91 3e-17
AE016819_857(AE016819|pid:none) Ashbya gossypii (= Eremothecium ... 90 5e-17
AJ608934_1(AJ608934|pid:none) Gossypium hirsutum mRNA for long c... 89 7e-17
CP000496_187(CP000496|pid:none) Pichia stipitis CBS 6054 chromos... 89 1e-16
AE016819_819(AE016819|pid:none) Ashbya gossypii (= Eremothecium ... 88 2e-16
AM920436_1883(AM920436|pid:none) Penicillium chrysogenum Wiscons... 88 2e-16
FM992688_1180(FM992688|pid:none) Candida dubliniensis CD36 chrom... 88 2e-16
(P25358) RecName: Full=Elongation of fatty acids protein 2; AltN... 87 3e-16
(P39540) RecName: Full=Elongation of fatty acids protein 1; &S4... 87 4e-16
CU928174_311(CU928174|pid:none) Zygosaccharomyces rouxii strain ... 87 4e-16
CU928170_156(CU928170|pid:none) Kluyveromyces thermotolerans str... 86 6e-16
X78326_1(X78326|pid:none) S.cerevisiae SUR4 gene. 86 6e-16
CR382139_442(CR382139|pid:none) Debaryomyces hansenii strain CBS... 86 8e-16
FB661741_1(FB661741|pid:none) Sequence 25 from Patent WO20071239... 86 8e-16
CR380958_355(CR380958|pid:none) Candida glabrata strain CBS138 c... 86 1e-15
AM910984_42(AM910984|pid:none) Plasmodium knowlesi strain H chro... 86 1e-15
FN392321_615(FN392321|pid:none) Pichia pastoris GS115 chromosome... 85 2e-15
BX294020_14(BX294020|pid:none) Neurospora crassa DNA linkage gro... 84 2e-15
CU928168_569(CU928168|pid:none) Kluyveromyces thermotolerans str... 84 3e-15
CR382122_310(CR382122|pid:none) Kluyveromyces lactis strain NRRL... 84 4e-15
AE017343_12(AE017343|pid:none) Cryptococcus neoformans var. neof... 83 7e-15
FN313775_1(FN313775|pid:none) Schistosoma japonicum isolate Anhu... 83 7e-15
AC117073_2(AC117073|pid:none) Dictyostelium discoideum chromosom... 82 1e-14
FN392321_239(FN392321|pid:none) Pichia pastoris GS115 chromosome... 81 2e-14
FM992689_297(FM992689|pid:none) Candida dubliniensis CD36 chromo... 81 2e-14
CU640366_1226(CU640366|pid:none) Podospora anserina genomic DNA ... 81 3e-14
(Q7LKX0) RecName: Full=Putative elongation of fatty acids protei... 80 4e-14
AB449110_1(AB449110|pid:none) Mortierella alpina MAELO gene for ... 80 6e-14
AF268031_1(AF268031|pid:none) Mortierella alpina long chain fatt... 80 6e-14
EU835909_1(EU835909|pid:none) Amylomyces rouxii strain ATCC 2490... 78 2e-13
H88690(H88690) protein F41H10.8 [imported] - Caenorhabditis eleg... 78 2e-13
EF133465_138(EF133465|pid:none) Heliothis virescens ascovirus 3e... 75 1e-12
GN042640_1(GN042640|pid:none) Sequence 5 from Patent WO2009016208. 75 2e-12
AB209798_1(AB209798|pid:none) Homo sapiens mRNA for homolog of y... 75 2e-12
AL031745_82(AL031745|pid:none) Plasmodium falciparum DNA from MA... 74 3e-12
GM840718_1(GM840718|pid:none) Sequence 358 from Patent WO2008124... 72 2e-11
GM840830_1(GM840830|pid:none) Sequence 470 from Patent WO2008124... 72 2e-11
AJ890364_77(AJ890364|pid:none) Emiliania huxleyi virus 86 isolat... 70 4e-11
AF390174_1(AF390174|pid:none) Isochrysis galbana long chain poly... 70 6e-11
AB171369_1(AB171369|pid:none) Macaca fascicularis brain cDNA clo... 69 8e-11
EF123104_1(EF123104|pid:none) Aureobasidium pullulans putative f... 69 1e-10
BC148954_1(BC148954|pid:none) Bos taurus hypothetical LOC533333,... 69 1e-10
BC046901_1(BC046901|pid:none) Danio rerio ELOVL family member 6,... 68 2e-10
GN363616_1(GN363616|pid:none) Sequence 16 from Patent WO20090462... 67 4e-10
GM840781_1(GM840781|pid:none) Sequence 421 from Patent WO2008124... 67 4e-10
AP007151_879(AP007151|pid:none) Aspergillus oryzae RIB40 genomic... 67 4e-10
(Q5ZJR8) RecName: Full=Elongation of very long chain fatty acids... 67 5e-10
(Q6PC64) RecName: Full=Elongation of very long chain fatty acids... 66 6e-10
CS608489_1(CS608489|pid:none) Sequence 11 from Patent WO20070425... 66 8e-10
AX214450_1(AX214450|pid:none) Sequence 5 from Patent WO0159128. 66 8e-10
(Q920L5) RecName: Full=Elongation of very long chain fatty acids... 66 8e-10
CS423976_1(CS423976|pid:none) Sequence 3 from Patent WO2006100241. 66 8e-10
AM269980_54(AM269980|pid:none) Aspergillus niger contig An01c033... 65 1e-09
CU633900_552(CU633900|pid:none) Podospora anserina genomic DNA c... 65 1e-09
AP007157_171(AP007157|pid:none) Aspergillus oryzae RIB40 genomic... 65 1e-09
AM494951_69(AM494951|pid:none) Leishmania braziliensis chromosom... 65 1e-09
AX214454_1(AX214454|pid:none) Sequence 9 from Patent WO0159128. ... 65 1e-09
DQ299828_1(DQ299828|pid:none) Thraustochytrium sp. FJN-10 polyun... 65 2e-09
AX214448_1(AX214448|pid:none) Sequence 3 from Patent WO0159128. 65 2e-09
AC159450_21(AC159450|pid:none) Trypanosoma brucei chromosome 7 c... 64 4e-09
GM840800_1(GM840800|pid:none) Sequence 440 from Patent WO2008124... 63 7e-09
AK029029_1(AK029029|pid:none) Mus musculus 10 days neonate skin ... 63 7e-09
GM840806_1(GM840806|pid:none) Sequence 446 from Patent WO2008124... 63 7e-09
GM840813_1(GM840813|pid:none) Sequence 453 from Patent WO2008124... 63 7e-09
AE013599_982(AE013599|pid:none) Drosophila melanogaster chromoso... 62 9e-09
BC095172_1(BC095172|pid:none) Danio rerio zgc:92749, mRNA (cDNA ... 62 2e-08
AL132949_6(AL132949|pid:none) Caenorhabditis elegans YAC Y53F4B,... 62 2e-08
Z68749_3(Z68749|pid:none) Caenorhabditis elegans Cosmid F56H11, ... 61 2e-08
AC116957_93(AC116957|pid:none) Dictyostelium discoideum chromoso... 61 2e-08
CR382136_509(CR382136|pid:none) Debaryomyces hansenii strain CBS... 61 2e-08
CT005253_78(CT005253|pid:none) Leishmania major strain Friedlin,... 61 2e-08
DQ472676_1(DQ472676|pid:none) Bufo gargarizans fatty acid elonga... 60 4e-08
CT005253_67(CT005253|pid:none) Leishmania major strain Friedlin,... 60 4e-08
AC159450_22(AC159450|pid:none) Trypanosoma brucei chromosome 7 c... 60 5e-08
AM502232_67(AM502232|pid:none) Leishmania infantum chromosome 14. 60 5e-08
AC159450_23(AC159450|pid:none) Trypanosoma brucei chromosome 7 c... 60 5e-08
BT081143_1(BT081143|pid:none) Caligus clemensi clone ccle-evs-51... 60 6e-08
AM910989_172(AM910989|pid:none) Plasmodium knowlesi strain H chr... 59 8e-08
AM502232_74(AM502232|pid:none) Leishmania infantum chromosome 14. 59 1e-07
FJ039823_1(FJ039823|pid:none) Kabatiella microsticta strain CBS ... 59 1e-07
FJ039841_1(FJ039841|pid:none) Aureobasidium pullulans var. nov. ... 59 1e-07
FJ039848_1(FJ039848|pid:none) Kabatiella microsticta strain CBS ... 59 1e-07
FJ039810_1(FJ039810|pid:none) Aureobasidium pullulans var. melan... 59 1e-07
FJ039813_1(FJ039813|pid:none) Aureobasidium pullulans var. melan... 59 1e-07
FJ039819_1(FJ039819|pid:none) Aureobasidium pullulans var. melan... 59 1e-07
FJ039847_1(FJ039847|pid:none) Selenophoma mahoniae strain CBS 38... 59 1e-07
FJ039820_1(FJ039820|pid:none) Aureobasidium pullulans var. melan... 59 1e-07
FJ039812_1(FJ039812|pid:none) Aureobasidium pullulans var. melan... 59 1e-07
FJ039816_1(FJ039816|pid:none) Aureobasidium pullulans var. melan... 59 1e-07
FN357308_36(FN357308|pid:none) Schistosoma mansoni genome sequen... 58 2e-07
T34200(T34200)hypothetical protein D2024.3 - Caenorhabditis eleg... 58 2e-07
CT005253_71(CT005253|pid:none) Leishmania major strain Friedlin,... 57 3e-07
AM494951_67(AM494951|pid:none) Leishmania braziliensis chromosom... 57 4e-07
AF187070_1(AF187070|pid:none) Dictyostelium discoideum steroid i... 56 7e-07
CS020093_1(CS020093|pid:none) Sequence 47 from Patent WO20050123... 56 9e-07
CR382132_292(CR382132|pid:none) Yarrowia lipolytica strain CLIB1... 56 9e-07
CT005253_73(CT005253|pid:none) Leishmania major strain Friedlin,... 56 9e-07
AM502232_73(AM502232|pid:none) Leishmania infantum chromosome 14. 55 1e-06
AM269991_7(AM269991|pid:none) Aspergillus niger contig An01c0450... 55 1e-06
AM502232_71(AM502232|pid:none) Leishmania infantum chromosome 14. 55 2e-06
AK074748_1(AK074748|pid:none) Homo sapiens cDNA FLJ90267 fis, cl... 54 3e-06
CS020095_1(CS020095|pid:none) Sequence 49 from Patent WO20050123... 54 3e-06
AM494951_66(AM494951|pid:none) Leishmania braziliensis chromosom... 54 3e-06
AM494951_63(AM494951|pid:none) Leishmania braziliensis chromosom... 54 3e-06
AM502232_72(AM502232|pid:none) Leishmania infantum chromosome 14. 54 4e-06
AM502232_76(AM502232|pid:none) Leishmania infantum chromosome 14. 52 1e-05
AM502232_66(AM502232|pid:none) Leishmania infantum chromosome 14. 52 2e-05
BC017270_1(BC017270|pid:none) Homo sapiens ELOVL family member 5... 52 2e-05
CT005253_76(CT005253|pid:none) Leishmania major strain Friedlin,... 51 3e-05
AM502232_160(AM502232|pid:none) Leishmania infantum chromosome 14. 50 4e-05
CT005253_75(CT005253|pid:none) Leishmania major strain Friedlin,... 50 5e-05
CT005253_77(CT005253|pid:none) Leishmania major strain Friedlin,... 50 5e-05
AM502232_75(AM502232|pid:none) Leishmania infantum chromosome 14. 50 5e-05
BT022383_1(BT022383|pid:none) Drosophila melanogaster IP08078 fu... 50 6e-05
AM502232_77(AM502232|pid:none) Leishmania infantum chromosome 14. 49 8e-05
BC095456_1(BC095456|pid:none) Homo sapiens elongation of very lo... 49 1e-04
AM494951_71(AM494951|pid:none) Leishmania braziliensis chromosom... 49 1e-04
AM494951_70(AM494951|pid:none) Leishmania braziliensis chromosom... 48 2e-04
CP000053_20(CP000053|pid:none) Rickettsia felis URRWXCal2, compl... 40 0.038
AL929357_41(AL929357|pid:none) Plasmodium falciparum strain 3D7,... 40 0.064
AJ719709_1(AJ719709|pid:none) Gallus gallus mRNA for hypothetica... 37 0.32
AK162271_1(AK162271|pid:none) Mus musculus adult male eyeball cD... 37 0.42
AX657532_1(AX657532|pid:none) Sequence 115 from Patent WO03000893. 37 0.54
(Q8NHA8) RecName: Full=Olfactory receptor 1F12; AltName: Full=Hs... 37 0.54
AL161590_9(AL161590|pid:none) Arabidopsis thaliana DNA chromosom... 36 0.71
AF193903_6(AF193903|pid:none) Cafeteria roenbergensis mitochondr... 36 0.71
(Q1LM81) RecName: Full=Probable intracellular septation protein;... 36 0.93
AE006641_2847(AE006641|pid:none) Sulfolobus solfataricus P2, com... 35 1.6
CP001401_2178(CP001401|pid:none) Sulfolobus islandicus M.16.27, ... 34 2.7
CP001400_2110(CP001400|pid:none) Sulfolobus islandicus M.14.25, ... 34 2.7
AF063590_16(AF063590|pid:none) Klebsiella pneumoniae strain RYC4... 34 2.7
CP000084_978(CP000084|pid:none) Candidatus Pelagibacter ubique H... 34 2.7
CP001403_978(CP001403|pid:none) Sulfolobus islandicus Y.G.57.14,... 34 3.5
CP000488_227(CP000488|pid:none) Candidatus Ruthia magnifica str.... 34 3.5
AF484029_2(AF484029|pid:none) Chironomus sp. LRC-2002 NADH dehyd... 33 4.6
FJ483517_12(FJ483517|pid:none) Bunostomum phlebotomum mitochondr... 33 4.6
BA000040_907(BA000040|pid:none) Bradyrhizobium japonicum USDA 11... 33 4.6
AB059546_1(AB059546|pid:none) Iphiclides podalirius mitochondria... 33 4.6
EU294166_2(EU294166|pid:none) Shigella dysenteriae O antigen gen... 33 7.9
AC137079_5(AC137079|pid:none) Medicago truncatula clone mth2-27d... 33 7.9
AL844507_120(AL844507|pid:none) Plasmodium falciparum 3D7 chromo... 33 7.9
T20249(T20249)hypothetical protein C55A1.2 - Caenorhabditis eleg... 33 7.9
AP006725_4876(AP006725|pid:none) Klebsiella pneumoniae NTUH-K204... 33 7.9
(Q54EJ6) RecName: Full=Putative uncharacterized transmembrane pr... 33 7.9

>(Q9EQC4) RecName: Full=Elongation of very long chain fatty acids
protein 4; &AF277093_1(AF277093|pid:none)
Length = 312

Score = 176 bits (446), Expect = 4e-43
Identities = 78/150 (52%), Positives = 107/150 (71%), Gaps = 4/150 (2%)
Frame = +1

Query: 34 MAKVLWLFYFSKFIEFMDTFFMVLRKKDSQITVLHVYHHSTMPMLWIMGIWYAAGGDSYI 213
+A LW ++ SK +E++DT F +LRKK++Q++ LHVYHH TM LW +GI + AGG ++
Sbjct: 124 IAAALWWYFVSKGVEYLDTVFFILRKKNNQVSFLHVYHHCTMFTLWWIGIKWVAGGQAFF 183

Query: 214 SALINSFIHTVMYSYYALSLFG----FNIWWKKYLTQLQLIQFAMNLIFSMWSLYNDCKF 381
A +NSFIH +MYSYY L+ FG +WWK+YLT LQL+QF + + + SLY DC F
Sbjct: 184 GAQMNSFIHVIMYSYYGLTAFGPWIQKYLWWKRYLTMLQLVQFHVTIGHTALSLYTDCPF 243

Query: 382 IKWMHWGMIIYMISFLFLFGAFYKRSYSQP 471
KWMHW +I Y ISF+FLF FY R+Y++P
Sbjct: 244 PKWMHWALIAYAISFIFLFLNFYTRTYNEP 273

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3268448
Number of Hits to DB: 852,972,290
Number of extensions: 16190919
Number of successful extensions: 36848
Number of sequences better than 10.0: 277
Number of HSP's gapped: 36512
Number of HSP's successfully gapped: 279
Length of query: 198
Length of database: 1,061,185,681
Length adjustment: 122
Effective length of query: 76
Effective length of database: 662,435,025
Effective search space: 50345061900
Effective search space used: 50345061900
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 30 (16.2 bits)

PSORT

psg: 0.82 gvh: 0.35 alm: 0.29 top: 0.83 tms: 0.07 mit: 0.16 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.40 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 1.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

24.0 %: cytoplasmic
20.0 %: nuclear
16.0 %: vesicles of secretory system
12.0 %: mitochondrial
8.0 %: Golgi
8.0 %: endoplasmic reticulum
4.0 %: extracellular, including cell wall
4.0 %: cytoskeletal
4.0 %: plasma membrane

>> prediction for Contig-U04576-1 is cyt

VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 3
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0