>Contig-U04548-1 (Contig-U04548-1Q) /CSM_Contig/Contig-U04548-1Q.Seq.d
AAAATATTTTTCAAGTTTATTAGGATTCCTTTTAAAAAAAGAATATGAAA
AAGATGAAGATTGTAAATCTTTGGAAACATTAAAAGAAATGGTGTTCTCT
GAACAAGATGATGTTACATTAGAATTGATCGAATTTACATATAATAAATG
TTTTGAAATTATTCAAAAAGCATCATACTNTGATATGCAAATTTCAACAT
TTGAAAATATAGTTAAAGAAAGTGATTTTACAACAGTTNAACAAGAATGT
TTAAATAAATTTTGGAAAGTTAATAAAAAGAAGATTCATGAAATTATATA
TAAAACCACAAGATTCAATAACTCTTTACAAAAAATTAGTTGGAGAATTG
ATGTTAAAACAAAATCAAAAGAAATTAGTGAAATTAATGAACCTGTATCA
ATTGTAGAATTAAAATTAAAAAATACCAATACCAATAATAATAATAATAA
TAAAAATGATTTAATAAGATGTGAAATGGATAAAAATCAATTAGAAGAAA
CTTTACAACAAATTAATAGTATTCAGAAACATTTACAAGCAAAATCTTTA
TAAATAAATTAAAATAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAATCA
AATCAAATAATAAGAA

est1=SSB382E,1,617
est2=SSK387E,242,575

KYFSSLLGFLLKKEYEKDEDCKSLETLKEMVFSEQDDVTLELIEFTYNKCFEIIQKASYX
DMQISTFENIVKESDFTTVXQECLNKFWKVNKKKIHEIIYKTTRFNNSLQKISWRIDVKT
KSKEISEINEPVSIVELKLKNTNTNNNNNNKNDLIRCEMDKNQLEETLQQINSIQKHLQA
KSL*in*nkkkkkkkkkenqik**e

Frame A:
kiffkfiripfkkri*kr*rl*ifgnikrngvl*tr*cyiridriyi**mf*nysksiil
*yanfni*kys*rk*fynsxtrmfk*iles**keds*nyi*nhkiq*lftkn*len*c*n
kikrn**n**tcincrikikkyqyq******k*fnkm*ng*ksirrnfttn**ysetfts
kifinklk*kkkkkkkkrksnqiir


Frame B:
KYFSSLLGFLLKKEYEKDEDCKSLETLKEMVFSEQDDVTLELIEFTYNKCFEIIQKASYX
DMQISTFENIVKESDFTTVXQECLNKFWKVNKKKIHEIIYKTTRFNNSLQKISWRIDVKT
KSKEISEINEPVSIVELKLKNTNTNNNNNNKNDLIRCEMDKNQLEETLQQINSIQKHLQA
KSL*in*nkkkkkkkkkenqik**e


Frame C:
nifqvy*dsf*kknmkkmkivnlwkh*kkwcslnkmmlh*n*snlhiinvlklfkkhhtx
ickfqhlki*lkkvilqqxnknv*infgklikrrfmklyikpqdsitlykklvgelmlkq
nqkklvklmnlyql*n*n*kipipiiiiiikmi**dvkwikin*kklynklivfrniykq
nlyk*ikikkkkkkkkkkiksnnk

Query= Contig-U04548-1 (Contig-U04548-1Q)
/CSM_Contig/Contig-U04548-1Q.Seq.d
         (616 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U04548-1 (Contig-U04548-1Q) /CSM_Contig/Conti...   753  0.0
Contig-U10996-1 (Contig-U10996-1Q) /CSM_Contig/Conti...    44  2e-04
Contig-U12729-1 (Contig-U12729-1Q) /CSM_Contig/Conti...    38  0.011
Contig-U09577-1 (Contig-U09577-1Q) /CSM_Contig/Conti...    38  0.011
Contig-U08656-1 (Contig-U08656-1Q) /CSM_Contig/Conti...    36  0.043
Contig-U14852-1 (Contig-U14852-1Q) /CSM_Contig/Conti...    34  0.17
Contig-U14108-1 (Contig-U14108-1Q) /CSM_Contig/Conti...    34  0.17
Contig-U12868-1 (Contig-U12868-1Q) /CSM_Contig/Conti...    34  0.17
Contig-U12673-1 (Contig-U12673-1Q) /CSM_Contig/Conti...    34  0.17
Contig-U11869-1 (Contig-U11869-1Q) /CSM_Contig/Conti...    34  0.17

>Contig-U04548-1 (Contig-U04548-1Q) /CSM_Contig/Contig-U04548-1Q.Seq.d
          Length = 616

 Score =  753 bits (380), Expect = 0.0
 Identities = 400/407 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaaatatttttcaagtttattaggattccttttnnnnnnngaatatgaaaaagatgaaga 60
           |||||||||||||||||||||||||||||||||       ||||||||||||||||||||
Sbjct: 1   aaaatatttttcaagtttattaggattccttttaaaaaaagaatatgaaaaagatgaaga 60

                                                                       
Query: 61  ttgtaaatctttggaaacattaaaagaaatggtgttctctgaacaagatgatgttacatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  ttgtaaatctttggaaacattaaaagaaatggtgttctctgaacaagatgatgttacatt 120

                                                                       
Query: 121 agaattgatcgaatttacatataataaatgttttgaaattattcaaaaagcatcatactn 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 agaattgatcgaatttacatataataaatgttttgaaattattcaaaaagcatcatactn 180

                                                                       
Query: 181 tgatatgcaaatttcaacatttgaaaatatagttaaagaaagtgattttacaacagttna 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tgatatgcaaatttcaacatttgaaaatatagttaaagaaagtgattttacaacagttna 240

                                                                       
Query: 241 acaagaatgtttaaataaattttggaaagttaataaaaagaagattcatgaaattatata 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 acaagaatgtttaaataaattttggaaagttaataaaaagaagattcatgaaattatata 300

                                                                       
Query: 301 taaaaccacaagattcaataactctttacaaaaaattagttggagaattgatgttaaaac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 taaaaccacaagattcaataactctttacaaaaaattagttggagaattgatgttaaaac 360

                                                          
Query: 361 aaaatcaaaagaaattagtgaaattaatgaacctgtatcaattgtag 407
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 aaaatcaaaagaaattagtgaaattaatgaacctgtatcaattgtag 407


 Score =  155 bits (78), Expect = 7e-38
 Identities = 78/78 (100%)
 Strand = Plus / Plus

                                                                       
Query: 488 caattagaagaaactttacaacaaattaatagtattcagaaacatttacaagcaaaatct 547
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 caattagaagaaactttacaacaaattaatagtattcagaaacatttacaagcaaaatct 547

                             
Query: 548 ttataaataaattaaaat 565
           ||||||||||||||||||
Sbjct: 548 ttataaataaattaaaat 565


 Score = 48.1 bits (24), Expect = 1e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 593 gaaaatcaaatcaaataataagaa 616
           ||||||||||||||||||||||||
Sbjct: 593 gaaaatcaaatcaaataataagaa 616


>Contig-U10996-1 (Contig-U10996-1Q) /CSM_Contig/Contig-U10996-1Q.Seq.d
          Length = 3027

 Score = 44.1 bits (22), Expect = 2e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 199 atttgaaaatatagttaaagaa 220
           ||||||||||||||||||||||
Sbjct: 426 atttgaaaatatagttaaagaa 447


>Contig-U12729-1 (Contig-U12729-1Q) /CSM_Contig/Contig-U12729-1Q.Seq.d
          Length = 1158

 Score = 38.2 bits (19), Expect = 0.011
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 324 ctttacaaaaaattagttg 342
           |||||||||||||||||||
Sbjct: 85  ctttacaaaaaattagttg 103


 Score = 34.2 bits (17), Expect = 0.17
 Identities = 20/21 (95%)
 Strand = Plus / Plus

                                
Query: 495 aagaaactttacaacaaatta 515
           |||||||||||||| ||||||
Sbjct: 79  aagaaactttacaaaaaatta 99


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 13,387
Number of Sequences: 6905
Number of extensions: 13387
Number of successful extensions: 1769
Number of sequences better than 10.0: 203
length of query: 616
length of database: 5,674,871
effective HSP length: 16
effective length of query: 600
effective length of database: 5,564,391
effective search space: 3338634600
effective search space used: 3338634600
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)

Query= Contig-U04548-1 (Contig-U04548-1Q) /CSM_Contig/Contig-U04548-1Q.Seq.d
         (616 letters)

Database: ddbj_A
           102,105,510 sequences; 101,790,757,118 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(C84246) Dictyostelium discoideum slug cDNA, clone SSB382.        420   e-155  3
(C91523) Dictyostelium discoideum slug cDNA, clone SSK387.        236   2e-94  2
(AU071390) Dictyostelium discoideum slug cDNA, clone SSB382.      289   2e-87  2
(CU469464) Candidatus Phytoplasma mali strain AT complete ch...    38   0.005  15
(FD462581) LARVT16TR Haematobia irritans 1st Instar Larvae H...    34   0.011  3
(AC027205) Homo sapiens chromosome 1 clone RP11-130F6 map 1,...    48   0.028  4
(AL844507) Plasmodium falciparum chromosome 8.                     36   0.075  15
(AC115584) Dictyostelium discoideum chromosome 2 map complem...    34   0.12   8
(CP000814) Campylobacter jejuni subsp. jejuni 81116, complet...    36   0.13   14
(AM460039) Vitis vinifera contig VV78X040253.6, whole genome...    38   0.16   2
(AL596026) Zebrafish DNA sequence from clone BUSM1-234G15 in...    40   0.29   4
(EK012027) 1092955198905 Global-Ocean-Sampling_GS-31-01-01-1...    36   0.30   2
(CU656003) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    34   0.30   7
(CP000942) Ureaplasma parvum serovar 3 str. ATCC 27815, comp...    38   0.33   14
(AF222894) Ureaplasma parvum serovar 3 str. ATCC 700970, com...    38   0.33   14
(BX324186) Zebrafish DNA sequence from clone DKEY-18B8 in li...    40   0.39   3
(AM456290) Vitis vinifera contig VV78X130929.19, whole genom...    48   0.39   3
(AC232517) Brassica rapa subsp. pekinensis clone KBrB070K15,...    40   0.40   4
(CR382285) Human DNA sequence from clone bP-21201H5 on chrom...    48   0.40   1
(AL365201) Human DNA sequence from clone RP11-39C22 on chrom...    48   0.40   1
(AC098860) Homo sapiens BAC clone RP11-229G4 from 4, complet...    48   0.40   1
(AC097651) Homo sapiens chromosome 4 clone RP11-130F6, WORKI...    48   0.40   1
(AC116956) Dictyostelium discoideum chromosome 2 map 1418423...    32   0.45   11
(AC220727) Bos taurus clone CH240-348D8, WORKING DRAFT SEQUE...    40   0.63   3
(AL391297) Human DNA sequence from clone RP4-598G3 on chromo...    36   0.66   8
(BJ338847) Dictyostelium discoideum cDNA clone:dda63b10, 5' ...    44   0.69   2
(AV510679) Mus musculus cDNA, Abe mouse ES cell cDNA library...    38   0.73   2
(AF250284) Amsacta moorei entomopoxvirus, complete genome.         32   0.74   10
(AL844506) Plasmodium falciparum chromosome  7.                    36   0.82   13
(AC149227) Pan troglodytes clone ptb-23e10, WORKING DRAFT SE...    36   0.94   6
(CU928641) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    38   0.97   5
(U49940) Caenorhabditis elegans cosmid T24D11, complete sequ...    46   0.99   3
(CP000776) Campylobacter hominis ATCC BAA-381, complete genome.    34   1.2    16
(AC005399) Homo sapiens chromosome 22 clone p238m15 map 22q1...    36   1.4    4
(AC115606) Dictyostelium discoideum chromosome 2 map 159760-...    34   1.5    6
(AC182699) Populus trichocarpa clone Pop1-72K24, complete se...    34   1.5    4
(BV245234) S234P6428RG7.T0 EnglishShepherd Canis familiaris ...    46   1.6    1
(CR855210) Oryza sativa genomic DNA, chromosome 4, BAC clone...    46   1.6    1
(AP008210) Oryza sativa (japonica cultivar-group) genomic DN...    46   1.6    1
(AL662958) Oryza sativa genomic DNA, chromosome 4, BAC clone...    46   1.6    1
(AX356463) Sequence 97 from Patent WO0181622.                      46   1.6    1
(AX281194) Sequence 59 from Patent WO0177377.                      46   1.6    1
(AR453082) Sequence 59 from patent US 6677731.                     46   1.6    1
(AC110670) Canis lupus familiaris clone RP81-67C22, WORKING ...    46   1.6    1
(AC221923) Bos taurus clone CH240-378E4, WORKING DRAFT SEQUE...    46   1.6    1
(FH323754) CHO_OF4545xd11f1.ab1 CHO_OF4 Nicotiana tabacum ge...    46   1.6    1
(EK074889) 1092961023978 Global-Ocean-Sampling_GS-31-01-01-1...    46   1.6    1
(EJ271058) 1095353015929 Global-Ocean-Sampling_GS-27-01-01-1...    46   1.6    1
(CT515610) A BAC library has been constructed from cultivar ...    46   1.6    1
(CE105613) tigr-gss-dog-17000371156289 Dog Library Canis lup...    46   1.6    1
(BZ416152) if64a04.g1 WGS-ZmaysF (DH5a methyl filtered) Zea ...    46   1.6    1
(AG207314) Oryza sativa Japonica Group DNA, clone:ND7067_0_4...    46   1.6    1
(AG206616) Oryza sativa Japonica Group DNA, clone:ND5040_0_4...    46   1.6    1
(BI322773) kx16a04.y3 Parastrongyloides trichosuri IL pAMP1 ...    46   1.6    1
(AC177062) Strongylocentrotus purpuratus clone R3-4004G3, WO...    36   1.7    5
(AC189732) Canis Familiaris, clone XX-68P11, complete sequence.    34   1.8    6
(AP009297) Solanum lycopersicum genomic DNA, chromosome 8, c...    36   1.8    5
(AM285302) Spiroplasma citri GII3-3X chromosome, contig Cont...    32   2.0    9
(CP000882) Hemiselmis andersenii chromosome 2, complete sequ...    30   2.1    9
(CP000538) Campylobacter jejuni subsp. jejuni 81-176, comple...    36   2.1    14
(BS000225) Pan troglodytes chromosome 22 clone:PTB-062A13, m...    32   2.3    7
(CT573123) Zebrafish DNA sequence from clone CH211-39K3 in l...    38   2.4    4
(AC008106) Homo sapiens chromosome 17 clone CTD-3008D3 map 1...    36   2.4    7
(AM471426) Vitis vinifera contig VV78X053076.5, whole genome...    28   2.6    5
(AX345796) Sequence 867 from Patent WO0200928.                     36   2.6    2
(AL592306) Zebrafish DNA sequence from clone BUSM1-67D8 in l...    40   2.8    4
(AL133285) Human DNA sequence *** SEQUENCING CANCELLED *** f...    36   3.0    7
(BX005370) Zebrafish DNA sequence from clone DKEY-21P9 in li...    32   3.0    2
(AM471122) Vitis vinifera contig VV78X143640.11, whole genom...    34   3.1    5
(BX927183) Zebrafish DNA sequence *** SEQUENCING CANCELLED *...    40   3.2    4
(CU468240) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    32   3.2    2
(AC108026) Homo sapiens BAC clone RP11-41E15 from 4, complet...    44   3.2    3
(AC144564) Medicago truncatula clone mth2-17n4, complete seq...    38   3.2    4
(DU866598) 83687 Tomato HindIII BAC Library Solanum lycopers...    42   3.3    2
(U87145) Toxoplasma gondii chloroplast, complete genome.           34   3.6    6
(AE017245) Mycoplasma synoviae 53, complete genome.                36   3.6    13
(CU138503) Zebrafish DNA sequence from clone CH211-114C17.         36   4.0    5
(DU880775) 398607 Tomato HindIII BAC Library Solanum lycoper...    34   4.1    2
(AZ539262) ENTFS61TR Entamoeba histolytica Sheared DNA Entam...    34   4.1    2
(EG620496) REPROTRACTF101173J15 POSSUM_01-POSSUM-C-REPROTRAC...    34   4.1    2
(FP015872) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    38   4.1    6
(FK730260) av02052i09r1.1 Symbiotic sea anemone (Anemonia vi...    32   4.1    2
(CG980163) CH240_159N05.TJ CHORI-240 Bos taurus genomic clon...    32   4.2    2
(AQ171701) HS_3172_B2_D01_T7 CIT Approved Human Genomic Sper...    32   4.2    2
(FH165175) CHO_OF3234xo13r1.ab1 CHO_OF3 Nicotiana tabacum ge...    30   4.2    3
(AM482976) Vitis vinifera contig VV78X055969.4, whole genome...    32   4.4    4
(AL512643) Human DNA sequence from clone RP11-265B7 on chrom...    34   4.4    6
(CR394561) Zebrafish DNA sequence from clone CH211-28G14 in ...    40   4.9    4
(AC098591) Homo sapiens BAC clone RP11-333E13 from 4, comple...    34   5.0    5
(AC115680) Dictyostelium discoideum chromosome 2 map 4915084...    32   5.0    8
(AC212432) Solanum lycopersicum chromosome 11 clone C11HBa00...    36   5.1    4
(AC150766) Bos taurus clone CH240-168J11, WORKING DRAFT SEQU...    34   5.1    7
(AC074121) Homo sapiens BAC clone RP11-725M1 from 7, complet...    36   5.3    3
(CT033841) Zebrafish DNA sequence from clone RP71-84K24 in l...    40   5.5    4
(AE014837) Plasmodium falciparum 3D7 chromosome 11 section 2...    32   5.6    8
(AL840625) Mouse DNA sequence from clone RP23-343F17 on chro...    42   5.7    4
(AC172320) Strongylocentrotus purpuratus clone R3-14E22, WOR...    34   5.8    6
(CU915408) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    40   5.8    3
(AC172023) Bos taurus clone CH240-270D5, WORKING DRAFT SEQUE...    38   5.8    3
(AC092129) Homo sapiens chromosome 16 clone RP11-140O8, comp...    36   6.0    5
(AZ733241) RPCI-24-120J14.TV RPCI-24 Mus musculus genomic cl...    36   6.0    2
(AC213152) Populus trichocarpa clone POP016-F22, complete se...    36   6.2    6
(CT025614) Mouse DNA sequence from clone RP23-418B18 on chro...    38   6.2    3
(BX640481) Zebrafish DNA sequence from clone DKEY-3H23 in li...    44   6.2    1
(AL844577) Mouse DNA sequence from clone RP23-129P1 on chrom...    44   6.2    1
(AC159475) Mus musculus 10 BAC RP23-55G19 (Roswell Park Canc...    44   6.2    1
(AC154372) Mus musculus BAC clone RP23-113F18 from 16, compl...    44   6.2    1
(AC147222) Mus musculus BAC clone RP23-69L20 from chromosome...    44   6.2    1
(AC122868) Mus musculus BAC clone RP23-148H17 from 6, comple...    44   6.2    1
(AC122798) Mus musculus BAC clone RP23-301A3 from 2, complet...    44   6.2    1
(AC104869) Mus musculus chromosome 10, clone RP24-534B24, co...    44   6.2    1
(AC192157) Pan troglodytes BAC clone CH251-490H18 from chrom...    44   6.2    1
(AM448847) Vitis vinifera, whole genome shotgun sequence, co...    44   6.2    1
(AM424663) Vitis vinifera contig VV78X067478.11, whole genom...    44   6.2    1
(AC116960) Dictyostelium discoideum chromosome 2 map complem...    44   6.2    1
(AC147204) Xenopus (Silurana) tropicalis clone CH216-146K20,...    44   6.2    1
(AC146287) Xenopus (Silurana) tropicalis clone CH216-99B5, W...    44   6.2    1
(AC140310) Mus musculus chromosome UNK clone RP23-389H12, WO...    44   6.2    1
(AC127998) Rattus norvegicus clone CH230-402P5, *** SEQUENCI...    44   6.2    1
(AC119526) Rattus norvegicus clone CH230-410O8, WORKING DRAF...    44   6.2    1
(AC117938) Canis lupus familiaris clone RP81-372I9, WORKING ...    44   6.2    1
(AC113567) Canis lupus familiaris clone RP81-265M12, WORKING...    44   6.2    1
(AC105786) Rattus norvegicus clone CH230-251J23, *** SEQUENC...    44   6.2    1
(CU928516) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   6.2    1
(CU927959) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   6.2    1
(AC211835) Chlorocebus aethiops clone CH252-458F1, WORKING D...    44   6.2    1
(AC191187) Echinops telfairi clone CH238-367G6, WORKING DRAF...    44   6.2    1
(AC188925) Canis lupus familiaris chromosome 27 clone XX-340...    44   6.2    1
(BH049595) RPCI-24-260H4.TJ RPCI-24 Mus musculus genomic clo...    44   6.2    1
(BH049533) RPCI-24-260H2.TJ RPCI-24 Mus musculus genomic clo...    44   6.2    1
(ET691404) CHO_OF266xh19r1.ab1 CHO_OF Nicotiana tabacum geno...    44   6.2    1
(EJ247579) 1095339006816 Global-Ocean-Sampling_GS-27-01-01-1...    44   6.2    1
(DE986073) Macropus eugenii DNA, BAC clone: MEB1-196K02_F, 5...    44   6.2    1
(DE603787) Bombyx mori genomic DNA, Fosmid clone:GBMFno265_f...    44   6.2    1
(CU808272) A BAC library has been constructed from PN40024 g...    44   6.2    1
(CE631673) tigr-gss-dog-17000366713920 Dog Library Canis lup...    44   6.2    1
(CV042582) cammoP022G09 cammo Biomphalaria glabrata cDNA clo...    44   6.2    1
(CB374194) rq58c10.y1 Heterodera glycines egg Heterodera gly...    44   6.2    1
(BJ423469) Dictyostelium discoideum cDNA clone:ddv49f11, 5' ...    44   6.2    1
(BJ418631) Dictyostelium discoideum cDNA clone:ddv33p11, 5' ...    44   6.2    1
(BJ397265) Dictyostelium discoideum cDNA clone:dds45n15, 5' ...    44   6.2    1
(BJ396558) Dictyostelium discoideum cDNA clone:dds43i01, 5' ...    44   6.2    1
(BJ395556) Dictyostelium discoideum cDNA clone:dds39f09, 5' ...    44   6.2    1
(BJ394478) Dictyostelium discoideum cDNA clone:dds35e11, 5' ...    44   6.2    1
(BJ393487) Dictyostelium discoideum cDNA clone:dds31a18, 5' ...    44   6.2    1
(BJ391717) Dictyostelium discoideum cDNA clone:dds24m22, 5' ...    44   6.2    1
(BJ371172) Dictyostelium discoideum cDNA clone:ddc56o19, 5' ...    44   6.2    1
(BJ370833) Dictyostelium discoideum cDNA clone:ddc55i14, 5' ...    44   6.2    1
(BJ370767) Dictyostelium discoideum cDNA clone:ddc55g10, 5' ...    44   6.2    1
(BJ365269) Dictyostelium discoideum cDNA clone:ddc34a24, 5' ...    44   6.2    1
(BJ339656) Dictyostelium discoideum cDNA clone:dda58j24, 5' ...    44   6.2    1
(BJ339184) Dictyostelium discoideum cDNA clone:dda64n11, 5' ...    44   6.2    1
(BJ338877) Dictyostelium discoideum cDNA clone:dda63h09, 5' ...    44   6.2    1
(BJ336366) Dictyostelium discoideum cDNA clone:dda53k18, 5' ...    44   6.2    1
(BJ336274) Dictyostelium discoideum cDNA clone:dda53g12, 5' ...    44   6.2    1
(BJ335651) Dictyostelium discoideum cDNA clone:dda51h04, 5' ...    44   6.2    1
(BJ335564) Dictyostelium discoideum cDNA clone:dda50a20, 5' ...    44   6.2    1
(BJ335102) Dictyostelium discoideum cDNA clone:dda48n23, 5' ...    44   6.2    1
(BJ334877) Dictyostelium discoideum cDNA clone:dda48k02, 5' ...    44   6.2    1
(BJ333265) Dictyostelium discoideum cDNA clone:dda42f03, 5' ...    44   6.2    1
(BJ332982) Dictyostelium discoideum cDNA clone:dda41f05, 5' ...    44   6.2    1
(BJ332744) Dictyostelium discoideum cDNA clone:dda40n15, 5' ...    44   6.2    1
(BJ331882) Dictyostelium discoideum cDNA clone:dda37l11, 5' ...    44   6.2    1
(BJ331814) Dictyostelium discoideum cDNA clone:dda36m06, 5' ...    44   6.2    1
(BJ331652) Dictyostelium discoideum cDNA clone:dda36d15, 5' ...    44   6.2    1
(BJ331356) Dictyostelium discoideum cDNA clone:dda35b04, 5' ...    44   6.2    1
(BJ331087) Dictyostelium discoideum cDNA clone:dda33h23, 5' ...    44   6.2    1
(BJ331025) Dictyostelium discoideum cDNA clone:dda33j17, 5' ...    44   6.2    1
(BJ331006) Dictyostelium discoideum cDNA clone:dda33e14, 5' ...    44   6.2    1
(BJ330845) Dictyostelium discoideum cDNA clone:dda32o24, 5' ...    44   6.2    1
(AC122241) Mus musculus BAC clone RP23-146M20 from chromosom...    42   6.5    5
(AL132862) Caenorhabditis elegans YAC Y73F8A.                      36   6.6    9
(AC102159) Mus musculus chromosome 19, clone RP23-398L11, co...    34   6.7    5
(AC035249) Arabidopsis thaliana chromosome 1 BAC F8D11 genom...    38   6.8    4
(AC025491) Homo sapiens chromosome 7 clone RP11-196B15 map 7...    36   7.0    4
(FP102551) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    34   7.0    7
(AC166156) Mus musculus BAC clone RP24-274H19 from chromosom...    34   7.1    6
(AC216412) Populus trichocarpa clone POP035-I15, complete se...    42   7.1    5
(AC116330) Dictyostelium discoideum chromosome 2 map 3191214...    34   7.1    6
(CU856076) H.melpomene DNA sequence from clone AEHM-7E22.          36   7.2    5
(AP008218) Oryza sativa (japonica cultivar-group) genomic DN...    30   7.4    2
(AC014030) Drosophila melanogaster, *** SEQUENCING IN PROGRE...    38   7.9    2
(AC010893) Homo sapiens chromosome 6 clone RP11-480A20, WORK...    30   8.0    7
(AC184064) Populus trichocarpa clone Pop1-109C22, complete s...    32   8.2    5
(AC009869) Homo sapiens chromosome 11, clone RP11-222N13, co...    40   8.3    4
(AC182671) Populus trichocarpa clone Pop1-24F1, complete seq...    36   8.4    6
(CR091621) Reverse strand read from insert in 3'HPRT inserti...    34   8.6    2
(AP007642) Lotus japonicus genomic DNA, chromosome 3, clone:...    34   8.9    5
(CP000721) Clostridium beijerinckii NCIMB 8052, complete gen...    34   9.0    16
(AC216914) Populus trichocarpa clone POP036-E01, complete se...    36   9.1    4
(AL035475) Plasmodium falciparum MAL4P2.                           34   9.2    7
(AL111168) Campylobacter jejuni subsp. jejuni NCTC 11168 com...    36   9.4    15
(L12043) Plasmodium falciparum unidentified mRNA sequence.         32   9.7    3
(AC189230) Brassica rapa subsp. pekinensis clone KBrB013J16,...    34   9.9    7
(AE014817) Plasmodium falciparum 3D7 chromosome 14 section 2...    30   10.0   10

>(C84246) Dictyostelium discoideum slug cDNA, clone SSB382.
          Length = 481

 Score =  420 bits (212), Expect(3) = e-155
 Identities = 221/224 (98%)
 Strand = Plus / Plus


Query: 137 acatataataaatgttttgaaattattcaaaaagcatcatactntgatatgcaaatttca 196
           ||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct: 1   acatataataaatgttttgaaattattcaaaaagcatcatantttgatatgcaaatttca 60


Query: 197 acatttgaaaatatagttaaagaaagtgattttacaacagttnaacaagaatgtttaaat 256
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  acatttgaaaatatagttaaagaaagtgattttacaacagttnaacaagaatgtttaaat 120


Query: 257 aaattttggaaagttaataaaaagaagattcatgaaattatatataaaaccacaagattc 316
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 aaattttggaaagttaataaaaagaagattcatgaaattatatataaaaccacaagattc 180


Query: 317 aataactctttacaaaaaattagttggagaattgatgttaaaac 360
           ||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 181 aataactntttacaaaaaattagttggagaattgatgttaaaac 224

 Score =  141 bits (71), Expect(3) = e-155
 Identities = 73/74 (98%)
 Strand = Plus / Plus


Query: 492 tagaagaaactttacaacaaattaatagtattcagaaacatttacaagcaaaatctttat 551
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 356 tagaagaaactttacaacaaattaatagtattcagaaacatttacaagcaaaatntttat 415


Query: 552 aaataaattaaaat 565
           ||||||||||||||
Sbjct: 416 aaataaattaaaat 429

 Score = 48.1 bits (24), Expect(3) = e-155
 Identities = 24/24 (100%)
 Strand = Plus / Plus


Query: 593 gaaaatcaaatcaaataataagaa 616
           ||||||||||||||||||||||||
Sbjct: 457 gaaaatcaaatcaaataataagaa 480

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 102105510
Number of Hits to DB: 817,540,376
Number of extensions: 55943936
Number of successful extensions: 5603254
Number of sequences better than 10.0: 195
Length of query: 616
Length of database: 101,790,757,118
Length adjustment: 23
Effective length of query: 593
Effective length of database: 99,442,330,388
Effective search space: 58969301920084
Effective search space used: 58969301920084
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)

Query= Contig-U04548-1 (Contig-U04548-1Q) /CSM_Contig/Contig-U04548-1Q.Seq.d
         (616 letters)

Database: nrp_A
           3,268,448 sequences; 1,061,185,681 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB076722_1(AB076722|pid:none) Mus musculus U2/MU mRNA, complete ...    65   2e-09
(Q8K4M5) RecName: Full=COMM domain-containing protein 1; AltName...    64   4e-09
BC030052_1(BC030052|pid:none) Mus musculus COMM domain containin...    64   4e-09
BC118890_1(BC118890|pid:none) Xenopus tropicalis hypothetical pr...    64   4e-09
BC160794_1(BC160794|pid:none) Xenopus tropicalis hypothetical pr...    64   4e-09
AK147766_1(AK147766|pid:none) Mus musculus melanocyte cDNA, RIKE...    64   4e-09
(Q8N668) RecName: Full=COMM domain-containing protein 1; AltName...    63   8e-09
AK223607_1(AK223607|pid:none) Homo sapiens mRNA for MURR1 varian...    63   8e-09
(Q8WMD0) RecName: Full=COMM domain-containing protein 1; AltName...    62   2e-08
AL772364_4(AL772364|pid:none) Mouse DNA sequence from clone RP23...    61   2e-08
BT045533_1(BT045533|pid:none) Salmo salar clone ssal-rgf-524-134...    52   1e-05
BX927391_2(BX927391|pid:none) Zebrafish DNA sequence from clone ...    47   4e-04
BC116596_1(BC116596|pid:none) Danio rerio zgc:136584, mRNA (cDNA...    47   6e-04
AF161515_1(AF161515|pid:none) Homo sapiens HSPC166 mRNA, complet...    39   0.12
(Q9P000) RecName: Full=COMM domain-containing protein 9;  &AK055...    39   0.12
BC030374_1(BC030374|pid:none) Mus musculus COMM domain containin...    38   0.26
BC056201_1(BC056201|pid:none) Mus musculus COMM domain containin...    38   0.26
BC101873_1(BC101873|pid:none) Rattus norvegicus COMM domain cont...    38   0.26
(Q8K2Q0) RecName: Full=COMM domain-containing protein 9;  &AK007...    38   0.26
AL136688_1(AL136688|pid:none) Homo sapiens mRNA; cDNA DKFZp564G0...    38   0.26
EU000469_1(EU000469|pid:none) Rattus norvegicus neuroprotective ...    38   0.26
AF226280_49(AF226280|pid:none) Campylobacter jejuni 81-176 virul...    37   0.34
CR382137_797(CR382137|pid:none) Debaryomyces hansenii strain CBS...    37   0.45
(Q2TBN5) RecName: Full=COMM domain-containing protein 9;  &BC109...    37   0.58
(Q550I8) RecName: Full=COMM domain-containing protein 4;               36   0.76
BC124913_1(BC124913|pid:none) Xenopus laevis cDNA clone IMAGE:51...    36   1.00
BC106231_1(BC106231|pid:none) Xenopus laevis cDNA clone IMAGE:77...    36   1.00
BC087306_1(BC087306|pid:none) Xenopus laevis hypothetical LOC496...    36   1.00
(A6LPB4) RecName: Full=DNA replication and repair protein recF; ...    35   1.7
CP001072_736(CP001072|pid:none) Helicobacter pylori Shi470, comp...    35   1.7
AE000511_595(AE000511|pid:none) Helicobacter pylori 26695, compl...    35   1.7
AY387737_1(AY387737|pid:none) Pneumocystis carinii clone V major...    35   2.2
CP000241_584(CP000241|pid:none) Helicobacter pylori HPAG1, compl...    35   2.2
AJ545046_1(AJ545046|pid:none) Mycoplasma hominis vmp gene for va...    35   2.2
(Q5AMN3) RecName: Full=Autophagy-related protein 11;                   35   2.2
DQ213254_1(DQ213254|pid:none) Taeniopygia guttata clone 0061P001...    35   2.2
AE001439_545(AE001439|pid:none) Helicobacter pylori J99, complet...    35   2.2
CP000263_65(CP000263|pid:none) Buchnera aphidicola str. Cc (Cina...    34   2.9
AL844509_266(AL844509|pid:none) Plasmodium falciparum 3D7 chromo...    34   2.9
CP000312_1398(CP000312|pid:none) Clostridium perfringens SM101, ...    34   3.8
CP001403_2648(CP001403|pid:none) Sulfolobus islandicus Y.G.57.14...    34   3.8
CP001401_2418(CP001401|pid:none) Sulfolobus islandicus M.16.27, ...    34   3.8
(Q54QK4) RecName: Full=COMM domain-containing protein 3;               34   3.8
CP001393_1957(CP001393|pid:none) Anaerocellum thermophilum DSM 6...    34   3.8
BX842655_238(BX842655|pid:none) Bdellovibrio bacteriovorus compl...    33   4.9
CP000679_2086(CP000679|pid:none) Caldicellulosiruptor saccharoly...    33   4.9
AF427496_1(AF427496|pid:none) Drosophila melanogaster occludin-l...    33   4.9
CP000246_1659(CP000246|pid:none) Clostridium perfringens ATCC 13...    33   4.9
FM992689_551(FM992689|pid:none) Candida dubliniensis CD36 chromo...    33   4.9
BA000016_1443(BA000016|pid:none) Clostridium perfringens str. 13...    33   4.9
AE006641_1583(AE006641|pid:none) Sulfolobus solfataricus P2, com...    33   4.9
AL844501_96(AL844501|pid:none) Plasmodium falciparum strain 3D7,...    33   4.9
(A4QLG7) RecName: Full=Putative membrane protein ycf1;  &AP00937...    33   6.5
(P57375) RecName: Full=Histidyl-tRNA synthetase;          EC=6.1...    33   6.5
CP001161_265(CP001161|pid:none) Buchnera aphidicola str. 5A (Acy...    33   6.5
(Q8VG09) RecName: Full=Olfactory receptor 502; AltName: Full=Olf...    33   6.5
CP001047_207(CP001047|pid:none) Mycoplasma arthritidis 158L3-1, ...    33   6.5
AY501912_1(AY501912|pid:none) Campylobacter jejuni strain TGH 90...    33   6.5
AL596255_1(AL596255|pid:none) Mouse DNA sequence from clone RP23...    33   8.4
(B0S1P2) RecName: Full=MutS2 protein;  &AP008971_864(AP008971|pi...    33   8.4
AM946635_1(AM946635|pid:none) Helicobacter pylori partial ORF2 D...    33   8.4
CT030003_17(CT030003|pid:none) Integrative Conjugative Element M...    33   8.4
CP000487_3(CP000487|pid:none) Campylobacter fetus subsp. fetus 8...    33   8.4
AE009951_1027(AE009951|pid:none) Fusobacterium nucleatum subsp. ...    33   8.4
CR380959_581(CR380959|pid:none) Candida glabrata strain CBS138 c...    33   8.4
DQ927304_44(DQ927304|pid:none) Tetrahymena paravorax strain RP m...    33   8.4
AJ719495_1(AJ719495|pid:none) Gallus gallus mRNA for hypothetica...    33   8.4
CR954208_117(CR954208|pid:none) Ostreococcus tauri strain OTTH05...    33   8.4
B83902(B83902) transcription repressor (beta-galactosidase gene)...    33   8.4
BT079715_1(BT079715|pid:none) Esox lucius clone eluc-evq-502-282...    33   8.4
CP000382_1316(CP000382|pid:none) Clostridium novyi NT, complete ...    33   8.4

>AB076722_1(AB076722|pid:none) Mus musculus U2/MU mRNA, complete
           cds.  &AL772364_3(AL772364|pid:none)
           &BX001008_1(BX001008|pid:none)
          Length = 243

 Score = 64.7 bits (156), Expect = 2e-09
 Identities = 38/144 (26%), Positives = 80/144 (55%), Gaps = 5/144 (3%)
 Frame = +2

Query: 119 LELIEFTYNKCFEIIQKASYXDMQISTFENIV-----KESDFTTVXQECLNKFWKVNKKK 283
           LEL +    +  E++  AS  DM  +  E  +     K+   T+     ++KFWK +K K
Sbjct: 100 LELRQHVMVEIQELLSIAS-ADMDFNQLEAFLTAQTKKQGGITSEQAAVISKFWKSHKIK 158

Query: 284 IHEIIYKTTRFNNSLQKISWRIDVKTKSKEISEINEPVSIVELKLXXXXXXXXXXXXXDL 463
           I E + K +R++N L+ +SWR+D K++S+  ++I+ PV+I+EL+              +
Sbjct: 159 IRESLMKQSRWDNGLRGLSWRVDGKSQSRHSTQIHSPVAIIELEF------GKNGQESEF 212

Query: 464 IRCEMDKNQLEETLQQINSIQKHL 535
           +  E D+ ++++ L++++ +++ +
Sbjct: 213 LCLEFDEVKVKQILKKLSEVEESI 236

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3268448
Number of Hits to DB: 636,348,525
Number of extensions: 10117750
Number of successful extensions: 35164
Number of sequences better than 10.0: 71
Number of HSP's gapped: 35134
Number of HSP's successfully gapped: 71
Length of query: 205
Length of database: 1,061,185,681
Length adjustment: 123
Effective length of query: 82
Effective length of database: 659,166,577
Effective search space: 54051659314
Effective search space used: 54051659314
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 31 (16.5 bits)

 psg: 0.94  gvh: 0.34  alm: 0.48  top: 0.27  tms: 0.00  mit: 0.20  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 36.0 %: nuclear
	  4.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for Contig-U04548-1 is cyt