Contig-U04547-1 |
Contig ID |
Contig-U04547-1 |
Contig update |
2001. 8.29 |
Contig sequence |
|
Gap |
no gap |
Contig length |
575 |
Chromosome number (1..6, M) |
3 |
Chromosome length |
6358359 |
Start point |
5599936 |
End point |
5599378 |
Strand (PLUS/MINUS) |
MINUS |
Number of clones |
1 |
Number of EST |
1 |
Link to clone list |
U04547 |
List of clone(s) |
|
Translated Amino Acid sequence |
|
Translated Amino Acid sequence (All Frames) |
|
own update |
2004. 6.10 |
Homology vs CSM-cDNA |
|
dna update |
2009. 6.23 |
Homology vs DNA |
Query= Contig-U04547-1 (Contig-U04547-1Q) /CSM_Contig/Contig-U04547-1Q.Seq.d (575 letters)
Database: ddbj_A 102,105,510 sequences; 101,790,757,118 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value N
(AY392444) Dictyostelium discoideum RNA-binding protein gene... 204 e-130 4 (AF072431) Dictyostelium discoideum putative RNA binding pro... 204 e-130 4 (AU071389) Dictyostelium discoideum slug cDNA, clone SSB379. 204 3e-79 2 (C84244) Dictyostelium discoideum slug cDNA, clone SSB379. 161 7e-79 3 (AC217718) Solanum tuberosum chromosome 1 clone RH089B02, **... 48 0.015 3 (AC116956) Dictyostelium discoideum chromosome 2 map 1418423... 52 0.024 1 (AU268606) Dictyostelium discoideum vegetative cDNA clone:VS... 52 0.024 1 (FK704784) ADM-P31_C01 Adult female salivary gland cDNA libr... 50 0.094 1 (AC232028) Solanum tuberosum chromosome 1 clone RH053G11, **... 38 0.22 2 (AF170083) Candida albicans putative transcriptional repress... 34 0.26 2 (AC234530) Solanum tuberosum chromosome 1 clone RH040C01, **... 48 0.37 1 (AC233419) Solanum tuberosum chromosome 1 clone RH071B08, **... 48 0.37 1 (ER863119) POTM801TF Solanum tuberosum RHPOTKEY BAC ends Sol... 48 0.37 1 (EI384617) POTCU50TR Solanum tuberosum RHPOTKEY BAC ends Sol... 48 0.37 1 (EI383514) POTC320TR Solanum tuberosum RHPOTKEY BAC ends Sol... 48 0.37 1 (EI383123) POTA375TR Solanum tuberosum RHPOTKEY BAC ends Sol... 48 0.37 1 (EI380234) POTBW65TR Solanum tuberosum RHPOTKEY BAC ends Sol... 48 0.37 1 (EI374463) POTBP30TF Solanum tuberosum RHPOTKEY BAC ends Sol... 48 0.37 1 (EI367531) POTCB91TF Solanum tuberosum RHPOTKEY BAC ends Sol... 48 0.37 1 (CU633509) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 36 0.47 5 (CU633895) Podospora anserina genomic DNA chromosome 4, supe... 46 1.5 1 (AC171131) Helobdella robusta clone CH306-1A2, complete sequ... 46 1.5 1 (AC171127) Helobdella robusta clone CH306-1A1, complete sequ... 46 1.5 1 (AC152852) Carollia perspicillata clone 299C9, WORKING DRAFT... 46 1.5 1 (AC152851) Carollia perspicillata clone 107E13, WORKING DRAF... 46 1.5 1 (EJ273521) 1095366003601 Global-Ocean-Sampling_GS-27-01-01-1... 46 1.5 1 (AU039777) Dictyostelium discoideum slug cDNA, clone SLG393. 46 1.5 1 (CU737586) Phaeodactylum tricornutum mRNA 5-prime sequence f... 46 1.5 1 (CU729866) Phaeodactylum tricornutum mRNA 5-prime sequence f... 46 1.5 1 (CU717104) Phaeodactylum tricornutum mRNA 5-prime sequence f... 46 1.5 1 (CU707884) Phaeodactylum tricornutum mRNA 5-prime sequence f... 46 1.5 1 (CU702886) Phaeodactylum tricornutum mRNA 5-prime sequence f... 46 1.5 1 (CU697610) Phaeodactylum tricornutum mRNA 5-prime sequence f... 46 1.5 1 (CT943844) Phaeodactylum tricornutum 5-PRIME EST from clone ... 46 1.5 1 (CT889120) Phaeodactylum tricornutum 5-PRIME EST from clone ... 46 1.5 1 (CT876479) Phaeodactylum tricornutum 5-PRIME EST from clone ... 46 1.5 1 (CT874363) Phaeodactylum tricornutum 5-PRIME EST from clone ... 46 1.5 1 (CT873006) Phaeodactylum tricornutum 5-PRIME EST from clone ... 46 1.5 1 (BJ382386) Dictyostelium discoideum cDNA clone:ddc44g14, 3' ... 46 1.5 1 (BE581738) kq51e10.y1 TBN95TM-SSR Strongyloides stercoralis ... 46 1.5 1 (FK073726) XABT132097.b1 Gateway compatible cien cDNA librar... 46 1.5 1 (FG287351) 1108770738534 New World Screwworm Egg 9261 ESTs C... 46 1.5 1 (FG282842) 1108383360865 New World Screwworm Egg 9261 ESTs C... 46 1.5 1 (FF790298) XABT86279.fwd Gateway compatible cien cDNA librar... 46 1.5 1 (EY176053) CBTI5365.g1_J22.ab1:P Triphysaria pusilla root ti... 46 1.5 1 (EX487651) HA_MX1_57g05_SP6 Lobster Multiple Tissues, Normal... 46 1.5 1 (CA997285) rg14f01.y1 Meloidogyne hapla J2 pAMP1 v1 Meloidog... 42 1.9 2 (EY381894) CAXA3738.rev CAXA Helobdella robusta Subtracted L... 38 2.2 2 (ER822756) PPTAH15TR Solanum tuberosum RHPOTKEY BAC ends Sol... 42 2.3 2 (ER851450) PPTFT22TF Solanum tuberosum RHPOTKEY BAC ends Sol... 42 2.3 2 (AC181946) Strongylocentrotus purpuratus clone R3-1008B10, W... 40 2.4 3 (CU633360) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 36 2.7 6 (EY332349) CAWY4797.fwd CAWY Helobdella robusta Subtracted E... 36 2.7 2 (EI383491) POTBB01TF Solanum tuberosum RHPOTKEY BAC ends Sol... 42 2.8 2 (EI821716) POTGL92TF Solanum tuberosum RHPOTKEY BAC ends Sol... 42 2.9 2 (AC196856) Medicago truncatula chromosome 7 BAC clone mth2-3... 42 3.7 2 (DU489006) 1098421162853 CHORI-243 Ovis aries genomic clone ... 34 3.9 2 (EY352514) CAWZ18861.rev CAWZ Helobdella robusta Primary Lat... 34 3.9 2 (BX284113) Zebrafish DNA sequence from clone CH211-247M3 in ... 44 5.8 1 (AF133300) Mus musculus MOR 3'Beta1, MOR 3'Beta2, MOR 3'Beta... 44 5.8 1 (AP008214) Oryza sativa (japonica cultivar-group) genomic DN... 44 5.8 1 (AP005245) Oryza sativa Japonica Group genomic DNA, chromoso... 44 5.8 1 (AP003883) Oryza sativa Japonica Group genomic DNA, chromoso... 44 5.8 1 (AM426608) Vitis vinifera contig VV78X010792.19, whole genom... 44 5.8 1 (AC215428) Solanum lycopersicum chromosome 2 clone C02HBa022... 44 5.8 1 (EA687282) Sequence 66161 from patent US 7365185. 44 5.8 1 (CQ610304) Sequence 38062 from Patent WO0171042. 44 5.8 1 (EU304615) Anopheles quadriannulatus isolate QUA23_B REL2 ge... 44 5.8 1 (DQ656524) Papilio zelicaon clone D224 microsatellite sequence. 44 5.8 1 (AE014298) Drosophila melanogaster chromosome X, complete se... 44 5.8 1 (AC115680) Dictyostelium discoideum chromosome 2 map 4915084... 44 5.8 1 (AC023705) Drosophila melanogaster X BAC RP98-7L6 (Roswell P... 44 5.8 1 (AC021856) Homo sapiens BAC clone RP11-553E5 from 4, complet... 44 5.8 1 (CU928183) Brassica rapa subsp. pekinensis clone KBrH026A01,... 44 5.8 1 (AC079636) Mus musculus clone RP23-16H9, WORKING DRAFT SEQUE... 44 5.8 1 (AC068088) Homo sapiens chromosome 4 clone RP11-565E18 map 4... 44 5.8 1 (AC232500) Brassica rapa subsp. pekinensis clone KBrB055E21,... 44 5.8 1 (AC180726) Strongylocentrotus purpuratus clone R3-3083J2, WO... 44 5.8 1 (AC167029) Bos taurus clone CH240-187F5, WORKING DRAFT SEQUE... 44 5.8 1 (AC012987) Drosophila melanogaster, *** SEQUENCING IN PROGRE... 44 5.8 1 (FH130157) CHO_OF3500xf14f1.ab1 CHO_OF3 Nicotiana tabacum ge... 44 5.8 1 (ER850446) POTJN45TR Solanum tuberosum RHPOTKEY BAC ends Sol... 44 5.8 1 (CW693152) OG_BBa0052D13.r OG_BBa Oryza glaberrima genomic c... 44 5.8 1 (CW424174) fsbb001f134g03f0 Sorghum methylation filtered lib... 44 5.8 1 (BZ475810) BONQF01TF BO_1.6_2_KB_tot Brassica oleracea genom... 44 5.8 1 (BZ042580) ljt11g10.b1 B.oleracea002 Brassica oleracea genom... 44 5.8 1 (BH603228) BOGNR14TF BOGN Brassica oleracea genomic clone BO... 44 5.8 1 (BH591189) BOGMT53TF BOGM Brassica oleracea genomic clone BO... 44 5.8 1 (DY966678) CLSM17831.b1_N17.ab1 CLS(LMS) lettuce sativa Lact... 44 5.8 1 (DN312160) PL06012A1G01 cDNA from juvenile hermaphodites Sch... 44 5.8 1 (DB696053) Solanum lycopersicum cDNA, clone: LEFL1056BG04, 5... 44 5.8 1 (DB688436) Solanum lycopersicum cDNA, clone: LEFL1033AB08, 5... 44 5.8 1 (DB679552) Solanum lycopersicum cDNA, clone: LEFL1004CC11, 5... 44 5.8 1 (CN768769) taf19a09.x1 Hydra EST Darmstadt I Hydra magnipapi... 44 5.8 1 (BB930387) Trifolium pratense cDNA clone:RCC02026. 44 5.8 1 (FG296422) 1108793252569 New World Screwworm Larvae 9387 EST... 44 5.8 1 (FG284529) 1108770671713 New World Screwworm Egg 9261 ESTs C... 44 5.8 1 (FC846447) CBHN4235.fwd CBHN Metridium senile tentacle Metri... 44 5.8 1 (AW398111) EST297994 L. pennellii trichome, Cornell Universi... 44 5.8 1 (EY337104) CAWY811.fwd CAWY Helobdella robusta Subtracted Ea... 44 5.8 1 (EY336934) CAWY8011.fwd CAWY Helobdella robusta Subtracted E... 44 5.8 1 (EY332280) CAWY4754.fwd CAWY Helobdella robusta Subtracted E... 44 5.8 1 (EX140714) BR124544 primary leaf cDNA library KLPS Brassica ... 44 5.8 1 (EX030014) BR014658 callus cDNA library KBCG Brassica rapa s... 44 5.8 1 (EV477410) Fc_nor_24D02_M13F Folsomia candida normalized cDN... 44 5.8 1 (EV197580) 0098733 Brassica napus Cold acclimation - light B... 44 5.8 1 (DX953997) CHORI105-48C4.TF CHORI105.pEpiFOS5 Trypanosoma cr... 34 8.4 2 (AC108576) Rattus norvegicus clone CH230-228K24, WORKING DRA... 38 9.2 2 (DX953998) CHORI105-48C4.TF.1 CHORI105.pEpiFOS5 Trypanosoma ... 34 9.2 2
>(AY392444) Dictyostelium discoideum RNA-binding protein gene, complete cds. Length = 3658
Score = 204 bits (103), Expect(4) = e-130 Identities = 103/103 (100%) Strand = Plus / Plus
Query: 1 aagaaaaaccaataaatataaatggtaaggttttgtcattaagttttgcaaaaccaatag 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2335 aagaaaaaccaataaatataaatggtaaggttttgtcattaagttttgcaaaaccaatag 2394
Query: 61 ataaaaaattaagatccgataagattcaaagaaaattacaaag 103 ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2395 ataaaaaattaagatccgataagattcaaagaaaattacaaag 2437
Score = 157 bits (79), Expect(4) = e-130 Identities = 79/79 (100%) Strand = Plus / Plus
Query: 177 gggaatctatttggaagtacatcttttaatcctcatattccccaacattataaaaactca 236 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2511 gggaatctatttggaagtacatcttttaatcctcatattccccaacattataaaaactca 2570
Query: 237 agtgtacattataaccaac 255 ||||||||||||||||||| Sbjct: 2571 agtgtacattataaccaac 2589
Score = 153 bits (77), Expect(4) = e-130 Identities = 80/81 (98%) Strand = Plus / Plus
Query: 412 aacttttacagcaacaacaacaacttcaaccccaacaattatatttcaattatccgaact 471 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct: 2746 aacttttacagcaacaacaacaacttcaaccccaacaattatattttaattatccgaact 2805
Query: 472 ccttaaataatggaaattttc 492 ||||||||||||||||||||| Sbjct: 2806 ccttaaataatggaaattttc 2826
Score = 42.1 bits (21), Expect(4) = e-130 Identities = 21/21 (100%) Strand = Plus / Plus
Query: 555 tttatatattctttccaaacg 575 ||||||||||||||||||||| Sbjct: 2889 tttatatattctttccaaacg 2909
Lambda K H 1.37 0.711 1.31
Matrix: blastn matrix:1 -3 Number of Sequences: 102105510 Number of Hits to DB: 421,846,776 Number of extensions: 29409362 Number of successful extensions: 3767591 Number of sequences better than 10.0: 111 Length of query: 575 Length of database: 101,790,757,118 Length adjustment: 23 Effective length of query: 552 Effective length of database: 99,442,330,388 Effective search space: 54892166374176 Effective search space used: 54892166374176 X1: 11 (21.8 bits) S2: 22 (44.1 bits)
|
protein update |
2009. 7.30 |
Homology vs Protein |
|
PSORT |
|
VS (DIR, S) |
0 |
VH (FL, L) |
0 |
VF (FL, S) |
0 |
AH (FL, L) |
0 |
AF (FL, S) |
0 |
SL (DIR, L) |
0 |
SS (DIR, S) |
1 |
SH (FL, L) |
0 |
SF (FL, S) |
0 |
CH (FL, L) |
0 |
CF (FL, S) |
0 |
FCL (DIR, L) |
0 |
FC (DIR, S) |
0 |
FC-IC (SUB) |
0 |