| Contig-U04537-1 |
| Contig ID |
Contig-U04537-1 |
| Contig update |
2002. 9.13 |
| Contig sequence |
 |
| Gap |
no gap |
| Contig length |
717 |
| Chromosome number (1..6, M) |
4 |
| Chromosome length |
5430582 |
| Start point |
5185641 |
| End point |
5186337 |
| Strand (PLUS/MINUS) |
PLUS |
| Number of clones |
5 |
| Number of EST |
6 |
| Link to clone list |
U04537 |
| List of clone(s) |
|
| Translated Amino Acid sequence |
|
| Translated Amino Acid sequence (All Frames) |
|
| own update |
2004. 6.10 |
| Homology vs CSM-cDNA |
|
| dna update |
2009. 6.22 |
| Homology vs DNA |
Query= Contig-U04537-1 (Contig-U04537-1Q) /CSM_Contig/Contig-U04537-1Q.Seq.d
(717 letters)
Database: ddbj_A
102,105,510 sequences; 101,790,757,118 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value N
(C90163) Dictyostelium discoideum slug cDNA, clone SSI164. 559 0.0 3
(AU038192) Dictyostelium discoideum slug cDNA, clone SSH391. 507 e-165 3
(AU073504) Dictyostelium discoideum slug cDNA, clone SSH391. 236 1e-62 3
(AU038621) Dictyostelium discoideum slug cDNA, clone SSL262. 133 5e-54 3
(C84227) Dictyostelium discoideum slug cDNA, clone SSB344. 103 1e-44 3
(C92381) Dictyostelium discoideum slug cDNA, clone SSE719. 103 6e-21 2
(DX055746) KBrB060G16R KBrB, Brassica rapa BamHI BAC library... 38 0.096 2
(AL607128) Human DNA sequence from clone RP11-444I9 on chrom... 46 0.17 4
(AC234000) Muntiacus reevesi clone CH245-267B1, WORKING DRAF... 48 0.47 1
(AC191470) Muntiacus reevesi clone CH245-66I15, WORKING DRAF... 48 0.47 1
(ER464429) 1092963913269 Global-Ocean-Sampling_GS-35-01-01-1... 48 0.47 1
(AC140292) Mus musculus chromosome UNK clone RP24-327G2, WOR... 32 0.96 2
(BX005206) Mouse DNA sequence from clone RP23-384P3 on chrom... 32 0.97 2
(BX890622) Mouse DNA sequence *** SEQUENCING IN PROGRESS ***... 32 0.97 2
(BX005197) Mouse DNA sequence from clone RP23-216H19 on chro... 32 0.98 2
(AC134465) Mus musculus chromosome UNK clone RP23-461D17, WO... 32 0.98 2
(CR381683) Mouse DNA sequence from clone RP24-559I10 on chro... 32 0.99 2
(AC130820) Mus musculus chromosome UNK clone RP23-193H17, WO... 32 0.99 2
(CT573299) Mouse DNA sequence from clone RP23-211C14 on chro... 32 1.0 2
(BX005170) Mouse DNA sequence from clone RP23-430A21 on chro... 32 1.0 2
(AC100273) Mus musculus clone RP23-94C8, LOW-PASS SEQUENCE S... 32 1.0 2
(BX927190) Mouse DNA sequence from clone RP23-136C14 on chro... 32 1.1 2
(EJ717006) 1092959426666 Global-Ocean-Sampling_GS-30-02-01-1... 36 1.1 2
(EJ672011) 1092955063114 Global-Ocean-Sampling_GS-30-02-01-1... 36 1.2 2
(AC126429) Mus musculus BAC clone RP24-403O23 from chromosom... 46 1.8 1
(AC122519) Mus musculus BAC clone RP24-462C10 from chromosom... 46 1.8 1
(AC110378) Mus musculus BAC clone RP24-193H8 from 6, complet... 46 1.8 1
(AC211112) Chlorocebus aethiops clone CH252-305I19, WORKING ... 46 1.8 1
(AC211099) Chlorocebus aethiops clone CH252-120E14, WORKING ... 46 1.8 1
(AC190367) Callicebus moloch clone LB5-228J22, WORKING DRAFT... 46 1.8 1
(AK172196) Mus musculus activated spleen cDNA, RIKEN full-le... 46 1.8 1
(EJ703729) 1092956045725 Global-Ocean-Sampling_GS-30-02-01-1... 46 1.8 1
(EJ673571) 1092955067965 Global-Ocean-Sampling_GS-30-02-01-1... 46 1.8 1
(CE291958) tigr-gss-dog-17000333862158 Dog Library Canis lup... 46 1.8 1
(AW996900) QV3-BN0047-160300-123-e08 BN0047 Homo sapiens cDN... 46 1.8 1
(AW945725) QV4-EN0032-130500-216-c05 EN0032 Homo sapiens cDN... 46 1.8 1
(AC102918) Mus musculus chromosome 7, clone RP24-273E13, com... 36 3.4 5
(CS468836) Sequence 27 from Patent EP1748080. 42 3.7 4
(CS468835) Sequence 26 from Patent EP1748080. 42 3.7 4
(CS419313) Sequence 27 from Patent WO2006094836. 42 3.7 4
(CS419312) Sequence 26 from Patent WO2006094836. 42 3.7 4
(CR735101) Zebrafish DNA sequence from clone DKEY-211C15 in ... 32 3.9 2
(AC216942) Populus trichocarpa clone POP024-B10, complete se... 42 4.2 4
(AX346917) Sequence 1988 from Patent WO0200928. 34 4.3 2
(DD391983) Method and nucleic acids for the improved treatme... 36 4.5 2
(DD391709) Method and nucleic acids for the improved treatme... 36 4.5 2
(CQ807239) Sequence 689 from Patent WO2004035803. 36 4.5 2
(CQ806965) Sequence 415 from Patent WO2004035803. 36 4.5 2
(CR803509) GR0AAA24BC09FM1 INRA BAC Bos taurus genomic clone... 34 4.7 2
(BH994946) oeh20a03.b1 B.oleracea002 Brassica oleracea genom... 32 4.8 2
(BX177540) Danio rerio genomic clone DKEY-182N12, genomic su... 32 4.8 2
(AX345628) Sequence 699 from Patent WO0200928. 36 4.8 2
(AX344660) Sequence 85 from Patent WO0200927. 36 4.8 2
(EI385509) POTDN46TR Solanum tuberosum RHPOTKEY BAC ends Sol... 42 4.9 2
(ER313572) 1092344117378 Global-Ocean-Sampling_GS-34-01-01-1... 34 4.9 3
(AX458567) Sequence 113 from Patent WO0246454. 36 5.3 2
(CT573102) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 36 6.3 5
(CR352285) Zebrafish DNA sequence from clone CH211-210K13 in... 44 7.3 1
(BX663501) Zebrafish DNA sequence from clone DKEY-117G20 in ... 44 7.3 1
(BX530409) Zebrafish DNA sequence from clone DKEY-69K9 in li... 44 7.3 1
(BX296559) Zebrafish DNA sequence from clone CH211-285F17 in... 44 7.3 1
(AC126798) Mus musculus BAC clone RP24-229N7 from chromosome... 44 7.3 1
(AP006680) Lotus japonicus genomic DNA, chromosome 1, clone:... 44 7.3 1
(AM465991) Vitis vinifera contig VV78X079387.3, whole genome... 44 7.3 1
(AM430963) Vitis vinifera contig VV78X262385.12, whole genom... 44 7.3 1
(AF309805) Pneumocystis carinii f. sp. carinii glutathione s... 44 7.3 1
(AF276732) Lilium superbum phytochrome A (PHYA) gene, partia... 44 7.3 1
(AC063953) Homo sapiens 3 BAC RP11-317I15 (Roswell Park Canc... 44 7.3 1
(AC009476) Homo sapiens BAC clone RP11-207O14 from 2, comple... 44 7.3 1
(AC134087) Rattus norvegicus clone CH230-238M9, *** SEQUENCI... 44 7.3 1
(AC123895) Rattus norvegicus clone CH230-60M14, *** SEQUENCI... 44 7.3 1
(AC122063) Rattus norvegicus clone CH230-451N1, WORKING DRAF... 44 7.3 1
(AC112712) Homo sapiens chromosome 2 clone RP11-16B6, WORKIN... 44 7.3 1
(AC099074) Rattus norvegicus clone CH230-40F7, WORKING DRAFT... 44 7.3 1
(CT573370) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 44 7.3 1
(CR936853) Zebrafish DNA sequence *** SEQUENCING CANCELLED *... 44 7.3 1
(AC205160) Zea mays chromosome 7 clone CH201-148K9; ZMMBBc01... 44 7.3 1
(AC204845) Zea mays chromosome 7 clone CH201-489H13; ZMMBBc0... 44 7.3 1
(AC204393) Zea mays chromosome 8 clone CH201-384A7; ZMMBBc03... 44 7.3 1
(AC197696) Zea mays chromosome 7 clone CH201-530I4, *** SEQU... 44 7.3 1
(AC178466) Strongylocentrotus purpuratus clone R3-3034I22, W... 44 7.3 1
(AC166500) Bos taurus clone CH240-185A3, WORKING DRAFT SEQUE... 44 7.3 1
(FH737369) CHO_OF5138xh04f1.ab1 CHO_OF5 Nicotiana tabacum ge... 44 7.3 1
(FH279071) CHO_OF4174xf13f1.ab1 CHO_OF4 Nicotiana tabacum ge... 44 7.3 1
(FH068637) CHO_OF3656xn23r1.ab1 CHO_OF3 Nicotiana tabacum ge... 44 7.3 1
(ET648574) JBVRY66TR JBVR Allium cepa genomic clone JBVRW_RX... 44 7.3 1
(ET646818) JBVRF44TR JBVR Allium cepa genomic clone JBVRC_RD... 44 7.3 1
(ET645288) JBVRY66TF JBVR Allium cepa genomic clone JBVRW_RX... 44 7.3 1
(ET644023) JBVRK72TF JBVR Allium cepa genomic clone JBVRK_RL... 44 7.3 1
(EK450647) 1095467268412 Global-Ocean-Sampling_GS-32-01-01-1... 44 7.3 1
(EK168241) 1095458063163 Global-Ocean-Sampling_GS-31-01-01-1... 44 7.3 1
(EK031400) 1092955410599 Global-Ocean-Sampling_GS-31-01-01-1... 44 7.3 1
(EK023511) 1092955348583 Global-Ocean-Sampling_GS-31-01-01-1... 44 7.3 1
(EJ531302) 1092955229799 Global-Ocean-Sampling_GS-29-01-01-1... 44 7.3 1
(DX425580) BE1037_F08_F IASMA L1 HindIII BAC library Vitis v... 44 7.3 1
(CT523253) A BAC library has been constructed from cultivar ... 44 7.3 1
(CT521538) A BAC library has been constructed from cultivar ... 44 7.3 1
(CT515544) A BAC library has been constructed from cultivar ... 44 7.3 1
(CG568697) OST195949 Mus musculus 129Sv/Ev Mus musculus cDNA... 44 7.3 1
(CG163418) PUFMD57TD ZM_0.6_1.0_KB Zea mays genomic clone ZM... 44 7.3 1
(CG163417) PUFMD57TB ZM_0.6_1.0_KB Zea mays genomic clone ZM... 44 7.3 1
(CE528466) tigr-gss-dog-17000365848449 Dog Library Canis lup... 44 7.3 1
(BZ108975) CH230-229C22.TV CHORI-230 Segment 1 Rattus norveg... 44 7.3 1
(CJ100979) Mus musculus 11 days embryo whole body cDNA, RIKE... 44 7.3 1
(CD079922) MA3-9999U-M280-D04-U.B MA3-0001 Schistosoma manso... 44 7.3 1
(BW598363) Lotus japonicus cDNA, clone: LjCa-014-AH03, 5' en... 44 7.3 1
(FM250331) Caenorhabditis elegans EST, clone C02_ce5.trans.... 44 7.3 1
(FF388493) MOOC791TF MOO Vigna unguiculata cDNA 5', mRNA seq... 44 7.3 1
(AW332197) S5E1 AGS-1 Pneumocystis carinii cDNA 3', mRNA seq... 44 7.3 1
(CU302319) Zebrafish DNA sequence from clone DKEY-108M3. 42 7.5 3
(BD452603) Diagnosis of Diseases Associated with tumor suppr... 42 7.6 2
(AX251082) Sequence 50 from Patent WO0168912. 42 7.6 2
(BX323820) Zebrafish DNA sequence from clone CH211-251K4 in ... 36 8.4 3
(AC012069) Homo sapiens BAC clone RP11-300D24 from 2, comple... 38 9.2 2
>(C90163) Dictyostelium discoideum slug cDNA, clone SSI164.
Length = 583
Score = 559 bits (282), Expect(3) = 0.0
Identities = 282/282 (100%)
Strand = Plus / Plus
Query: 107 gagtcatcatcatcattcaccaccaagcttctcttgtagttgcatatcttcttttaatct 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7 gagtcatcatcatcattcaccaccaagcttctcttgtagttgcatatcttcttttaatct 66
Query: 167 ttttaggattttttggtgttcatagattttatgtaggtcgtacaatttcaggagttgtgt 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67 ttttaggattttttggtgttcatagattttatgtaggtcgtacaatttcaggagttgtgt 126
Query: 227 accttctcactggtggtatttttggtattggatatattgtagatttctttttacttccat 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 127 accttctcactggtggtatttttggtattggatatattgtagatttctttttacttccat 186
Query: 287 cactcgtttgtcactataataataaacatcatgatcatacaacagtgatcgtttcaccaa 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 187 cactcgtttgtcactataataataaacatcatgatcatacaacagtgatcgtttcaccaa 246
Query: 347 ctccagttgtttatcaatcaggttcacaacattatgctccat 388
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 ctccagttgtttatcaatcaggttcacaacattatgctccat 288
Score = 103 bits (52), Expect(3) = 0.0
Identities = 52/52 (100%)
Strand = Plus / Plus
Query: 606 gttttattattatttaaataaatctttaggttttaaaattttgtacactgat 657
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 gttttattattatttaaataaatctttaggttttaaaattttgtacactgat 557
Score = 34.2 bits (17), Expect(3) = 0.0
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 519 aaatagtgttttttttt 535
|||||||||||||||||
Sbjct: 419 aaatagtgttttttttt 435
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Number of Sequences: 102105510
Number of Hits to DB: 692,053,160
Number of extensions: 47498112
Number of successful extensions: 4717340
Number of sequences better than 10.0: 115
Length of query: 717
Length of database: 101,790,757,118
Length adjustment: 24
Effective length of query: 693
Effective length of database: 99,340,224,878
Effective search space: 68842775840454
Effective search space used: 68842775840454
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
|
| protein update |
2009. 7.30 |
| Homology vs Protein |
Query= Contig-U04537-1 (Contig-U04537-1Q) /CSM_Contig/Contig-U04537-1Q.Seq.d
(717 letters)
Database: nrp_A
3,268,448 sequences; 1,061,185,681 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
(Q9GPR3) RecName: Full=TM2 domain-containing protein DDB0214922;... 74 3e-12
CP000252_2176(CP000252|pid:none) Syntrophus aciditrophicus SB, c... 71 4e-11
BX294142_179(BX294142|pid:none) Rhodopirellula baltica SH 1 comp... 70 7e-11
AY375531_84(AY375531|pid:none) Bacteriophage 44RR2.8t, complete ... 69 1e-10
AY962392_83(AY962392|pid:none) Aeromonas phage 31, complete geno... 69 1e-10
CP000859_1987(CP000859|pid:none) Desulfococcus oleovorans Hxd3, ... 69 1e-10
CP000142_1745(CP000142|pid:none) Pelobacter carbinolicus DSM 238... 68 2e-10
CP000514_166(CP000514|pid:none) Marinobacter aquaeolei VT8, comp... 66 1e-09
AM286690_819(AM286690|pid:none) Alcanivorax borkumensis SK2, com... 65 2e-09
CP000680_4117(CP000680|pid:none) Pseudomonas mendocina ymp, comp... 65 3e-09
CP001037_5911(CP001037|pid:none) Nostoc punctiforme PCC 73102, c... 64 4e-09
DQ155425_3(DQ155425|pid:none) Nostoc commune DRH1 3-phosphoshiki... 64 4e-09
CP000076_5742(CP000076|pid:none) Pseudomonas fluorescens Pf-5, c... 64 6e-09
CP000828_3658(CP000828|pid:none) Acaryochloris marina MBIC11017,... 64 6e-09
CP001157_302(CP001157|pid:none) Azotobacter vinelandii DJ, compl... 63 1e-08
CP000094_5311(CP000094|pid:none) Pseudomonas fluorescens Pf0-1, ... 62 1e-08
CP000949_374(CP000949|pid:none) Pseudomonas putida W619, complet... 62 2e-08
CT573326_285(CT573326|pid:none) Pseudomonas entomophila str. L48... 62 2e-08
AM181176_5637(AM181176|pid:none) Pseudomonas fluorescens SBW25 c... 62 2e-08
CP000075_480(CP000075|pid:none) Pseudomonas syringae pv. syringa... 62 2e-08
CP000058_460(CP000058|pid:none) Pseudomonas syringae pv. phaseol... 62 2e-08
AE004091_399(AE004091|pid:none) Pseudomonas aeruginosa PAO1, com... 62 2e-08
CP001614_3015(CP001614|pid:none) Teredinibacter turnerae T7901, ... 62 2e-08
CR522870_2882(CR522870|pid:none) Desulfotalea psychrophila LSv54... 61 3e-08
CP000744_497(CP000744|pid:none) Pseudomonas aeruginosa PA7, comp... 61 3e-08
AE015451_5022(AE015451|pid:none) Pseudomonas putida KT2440 compl... 60 5e-08
CP000926_5109(CP000926|pid:none) Pseudomonas putida GB-1, comple... 60 7e-08
CP000240_1176(CP000240|pid:none) Synechococcus sp. JA-2-3B'a(2-1... 59 1e-07
AC2218(AC2218) hypothetical protein all3298 [imported] - Nostoc ... 58 3e-07
CT978603_946(CT978603|pid:none) Synechococcus sp. RCC307 genomic... 58 3e-07
CP000117_4928(CP000117|pid:none) Anabaena variabilis ATCC 29413,... 57 8e-07
CP001291_1783(CP001291|pid:none) Cyanothece sp. PCC 7424, comple... 57 8e-07
CP000393_2087(CP000393|pid:none) Trichodesmium erythraeum IMS101... 57 8e-07
BA000039_1307(BA000039|pid:none) Thermosynechococcus elongatus B... 56 1e-06
CP001453_24(CP001453|pid:none) Borrelia burgdorferi WI91-23 plas... 54 4e-06
AP009384_342(AP009384|pid:none) Azorhizobium caulinodans ORS 571... 54 4e-06
CP001376_25(CP001376|pid:none) Borrelia burgdorferi 72a plasmid ... 52 1e-05
AY309081_4(AY309081|pid:none) Borrelia burgdorferi strain Sh-2-8... 52 2e-05
CP000806_1789(CP000806|pid:none) Cyanothece sp. ATCC 51142 circu... 52 2e-05
CP001520_46(CP001520|pid:none) Borrelia sp. SV1 plasmid SV1_cp32... 51 3e-05
CP000239_2746(CP000239|pid:none) Synechococcus sp. JA-3-3Ab, com... 50 5e-05
AE016823_2752(AE016823|pid:none) Leptospira interrogans serovar ... 50 7e-05
AE010300_782(AE010300|pid:none) Leptospira interrogans serovar l... 50 7e-05
CP000980_1(CP000980|pid:none) Borrelia duttonii Ly plasmid pl23,... 50 7e-05
CP001145_1003(CP001145|pid:none) Coprothermobacter proteolyticus... 49 2e-04
AY657663_1(AY657663|pid:none) Synthetic construct Peudomonas aer... 49 2e-04
FM209186_4519(FM209186|pid:none) Pseudomonas aeruginosa LESB58 c... 49 2e-04
A83543(A83543) hypothetical protein PA0825 [imported] - Pseudomo... 49 2e-04
CP001145_1002(CP001145|pid:none) Coprothermobacter proteolyticus... 47 5e-04
CP001615_2100(CP001615|pid:none) Exiguobacterium sp. AT1b, compl... 46 0.001
CP000817_1783(CP000817|pid:none) Lysinibacillus sphaericus C3-41... 46 0.001
CP000356_1080(CP000356|pid:none) Sphingopyxis alaskensis RB2256,... 45 0.002
CP001656_1114(CP001656|pid:none) Paenibacillus sp. JDR-2, comple... 45 0.002
CP000158_373(CP000158|pid:none) Hyphomonas neptunium ATCC 15444,... 45 0.003
CP000489_2236(CP000489|pid:none) Paracoccus denitrificans PD1222... 45 0.003
AY129333_40(AY129333|pid:none) Mycobacterium phage Che9c, comple... 45 0.003
CP000487_1623(CP000487|pid:none) Campylobacter fetus subsp. fetu... 44 0.004
(A9ULE9) RecName: Full=DnaJ homolog subfamily C member 22; &BC1... 44 0.004
AP009552_2756(AP009552|pid:none) Microcystis aeruginosa NIES-843... 44 0.005
AL646052_1614(AL646052|pid:none) Ralstonia solanacearum GMI1000 ... 44 0.007
AP009152_2339(AP009152|pid:none) Kocuria rhizophila DC2201 DNA, ... 44 0.007
(Q5PR00) RecName: Full=DnaJ homolog subfamily C member 22; &BC0... 44 0.007
AL671140_6(AL671140|pid:none) Mouse DNA sequence from clone RP23... 43 0.009
(Q99MB3) RecName: Full=TM2 domain-containing protein 1; AltName:... 43 0.009
BA000022_2871(BA000022|pid:none) Synechocystis sp. PCC 6803 DNA,... 43 0.009
BC112745_1(BC112745|pid:none) Bos taurus TM2 domain containing 1... 43 0.009
(Q9BX74) RecName: Full=TM2 domain-containing protein 1; AltName:... 43 0.009
AM902716_962(AM902716|pid:none) Bordetella petrii strain DSM 128... 43 0.011
BA000030_3408(BA000030|pid:none) Streptomyces avermitilis MA-468... 43 0.011
AK341092_1(AK341092|pid:none) Acyrthosiphon pisum ACYPI007262 mR... 43 0.011
CP000685_832(CP000685|pid:none) Flavobacterium johnsoniae UW101,... 42 0.015
CP000153_1829(CP000153|pid:none) Sulfurimonas denitrificans DSM ... 42 0.019
BC118149_1(BC118149|pid:none) Bos taurus DnaJ (Hsp40) homolog, s... 42 0.019
(Q8CHS2) RecName: Full=DnaJ homolog subfamily C member 22; &BC0... 42 0.019
CR954246_1444(CR954246|pid:none) Pseudoalteromonas haloplanktis ... 42 0.019
CP000159_278(CP000159|pid:none) Salinibacter ruber DSM 13855, co... 42 0.025
CP000703_1258(CP000703|pid:none) Staphylococcus aureus subsp. au... 42 0.025
A89894(A89894) conserved hypothetical protein SA1057 [imported] ... 42 0.025
AY813774_1(AY813774|pid:none) Schistosoma japonicum SJCHGC08970 ... 42 0.025
BT047767_1(BT047767|pid:none) Salmo salar clone ssal-eve-517-359... 42 0.025
(Q5RBD7) RecName: Full=DnaJ homolog subfamily C member 22; &CR8... 42 0.025
CP000820_4800(CP000820|pid:none) Frankia sp. EAN1pec, complete g... 42 0.025
CP000885_3161(CP000885|pid:none) Clostridium phytofermentans ISD... 41 0.033
FN357434_2(FN357434|pid:none) Schistosoma mansoni genome sequenc... 41 0.033
AP009608_743(AP009608|pid:none) Mycoplasma fermentans PG18 DNA, ... 41 0.043
AP009256_1339(AP009256|pid:none) Bifidobacterium adolescentis AT... 40 0.056
CP000792_43(CP000792|pid:none) Campylobacter concisus 13826, com... 40 0.073
BA000035_122(BA000035|pid:none) Corynebacterium efficiens YS-314... 40 0.073
CP001213_556(CP001213|pid:none) Bifidobacterium animalis subsp. ... 40 0.073
CP000607_347(CP000607|pid:none) Chlorobium phaeovibrioides DSM 2... 40 0.095
AF250284_16(AF250284|pid:none) Amsacta moorei entomopoxvirus, co... 39 0.12
BT076292_1(BT076292|pid:none) Caligus rogercresseyi clone crog-e... 39 0.12
BT075976_1(BT075976|pid:none) Caligus rogercresseyi clone crog-e... 39 0.12
(Q5XGR4) RecName: Full=TM2 domain-containing protein 2; Flags: P... 39 0.12
CP001145_1004(CP001145|pid:none) Coprothermobacter proteolyticus... 39 0.16
BT074605_1(BT074605|pid:none) Osmerus mordax clone omor-rgc-509-... 39 0.21
DQ216215_1(DQ216215|pid:none) Taeniopygia guttata clone 0058P005... 39 0.21
AL009126_1952(AL009126|pid:none) Bacillus subtilis subsp. subtil... 39 0.21
(Q2TA35) RecName: Full=TM2 domain-containing protein 2; Flags: P... 39 0.21
(Q5M8E3) RecName: Full=TM2 domain-containing protein 2; Flags: P... 39 0.21
(Q566R2) RecName: Full=TM2 domain-containing protein 2; Flags: P... 39 0.21
CP001068_1900(CP001068|pid:none) Ralstonia pickettii 12J chromos... 39 0.21
AK083654_1(AK083654|pid:none) Mus musculus 9 days embryo whole b... 39 0.21
AX118885_1(AX118885|pid:none) Sequence 49 from Patent WO0129221. 39 0.21
AK075027_1(AK075027|pid:none) Homo sapiens cDNA FLJ90546 fis, cl... 39 0.21
CP000875_352(CP000875|pid:none) Herpetosiphon aurantiacus ATCC 2... 39 0.21
(Q5RCC0) RecName: Full=TM2 domain-containing protein 2; Flags: P... 39 0.21
(Q6DHN3) RecName: Full=TM2 domain-containing protein 2; Flags: P... 39 0.21
CP001239_25(CP001239|pid:none) Borrelia afzelii ACA-1 plasmid lp... 38 0.28
S44605(S44605)C02F5.3 protein - Caenorhabditis elegans 38 0.28
BX950851_2128(BX950851|pid:none) Erwinia carotovora subsp. atros... 38 0.28
(P61228) RecName: Full=TM2 domain-containing protein C02F5.13; F... 38 0.28
(Q95PJ8) RecName: Full=TM2 domain-containing protein Y66D12A.21;... 38 0.28
CT978603_1656(CT978603|pid:none) Synechococcus sp. RCC307 genomi... 38 0.28
FN357354_43(FN357354|pid:none) Schistosoma mansoni genome sequen... 38 0.28
CP001348_1387(CP001348|pid:none) Clostridium cellulolyticum H10,... 38 0.28
CP001644_1575(CP001644|pid:none) Ralstonia pickettii 12D chromos... 38 0.28
(Q94421) RecName: Full=TM2 domain-containing protein ZK858.5; &... 38 0.36
T28057(T28057)hypothetical protein ZK858.5 - Caenorhabditis eleg... 38 0.36
AM942759_242(AM942759|pid:none) Proteus mirabilis strain HI4320,... 37 0.47
(Q9W2H1) RecName: Full=TM2 domain-containing protein CG10795; Fl... 37 0.62
CU672275_1(CU672275|pid:none) H.melpomene DNA sequence from clon... 37 0.62
AY816148_1(AY816148|pid:none) Schistosoma japonicum clone SJCHGC... 37 0.62
CU681835_10(CU681835|pid:none) H.melpomene DNA sequence from clo... 37 0.62
CP000393_759(CP000393|pid:none) Trichodesmium erythraeum IMS101,... 37 0.62
CP001287_918(CP001287|pid:none) Cyanothece sp. PCC 8801, complet... 37 0.62
CP000667_1899(CP000667|pid:none) Salinispora tropica CNB-440, co... 37 0.80
AE014298_2049(AE014298|pid:none) Drosophila melanogaster chromos... 37 0.80
AP008934_1880(AP008934|pid:none) Staphylococcus saprophyticus su... 37 0.80
CP001342_131(CP001342|pid:none) Arthrobacter chlorophenolicus A6... 37 0.80
CP000688_124(CP000688|pid:none) Dehalococcoides sp. BAV1, comple... 37 0.80
CP001348_584(CP001348|pid:none) Clostridium cellulolyticum H10, ... 36 1.4
BX897700_480(BX897700|pid:none) Bartonella quintana str. Toulous... 35 1.8
CP001099_298(CP001099|pid:none) Chlorobaculum parvum NCIB 8327, ... 35 1.8
(Q07FZ2) RecName: Full=TM2 domain-containing protein 3; Flags: P... 35 2.3
(Q6DE06) RecName: Full=TM2 domain-containing protein 3; Flags: P... 35 2.3
CU928175_663(CU928175|pid:none) Zygosaccharomyces rouxii strain ... 35 3.0
AE000788_51(AE000788|pid:none) Borrelia burgdorferi B31 plasmid ... 35 3.1
CP001344_4448(CP001344|pid:none) Cyanothece sp. PCC 7425, comple... 35 3.1
CR936503_728(CR936503|pid:none) Lactobacillus sakei strain 23K c... 35 3.1
AP008231_1132(AP008231|pid:none) Synechococcus elongatus PCC 630... 34 4.0
CP001540_27(CP001540|pid:none) Borrelia burgdorferi 118a plasmid... 34 4.0
CP001114_2303(CP001114|pid:none) Deinococcus deserti VCD115, com... 34 4.0
AM295250_645(AM295250|pid:none) Staphylococcus carnosus subsp. c... 34 4.0
CP000114_513(CP000114|pid:none) Streptococcus agalactiae A909, c... 34 4.0
CU458896_2618(CU458896|pid:none) Mycobacterium abscessus chromos... 34 4.0
AP011115_736(AP011115|pid:none) Rhodococcus opacus B4 DNA, compl... 34 5.2
CP000142_2948(CP000142|pid:none) Pelobacter carbinolicus DSM 238... 34 5.2
CP000419_177(CP000419|pid:none) Streptococcus thermophilus LMD-9... 34 5.2
AE014295_40(AE014295|pid:none) Bifidobacterium longum NCC2705, c... 33 6.8
CP001095_687(CP001095|pid:none) Bifidobacterium longum subsp. in... 33 6.8
CP000155_6502(CP000155|pid:none) Hahella chejuensis KCTC 2396, c... 33 6.8
CP000605_52(CP000605|pid:none) Bifidobacterium longum DJO10A, co... 33 6.8
CP000431_1001(CP000431|pid:none) Rhodococcus jostii RHA1, comple... 33 6.8
CP000685_833(CP000685|pid:none) Flavobacterium johnsoniae UW101,... 33 8.9
>(Q9GPR3) RecName: Full=TM2 domain-containing protein DDB0214922;
&AF310895_3(AF310895|pid:none)
Length = 153
Score = 74.3 bits (181), Expect = 3e-12
Identities = 36/78 (46%), Positives = 47/78 (60%)
Frame = +1
Query: 130 QASLVVAYLLLIFLGFFGVHRFYVGRTISGVVYLLTGGIFGIGYIVDFFLLPSLVCHYNN 309
Q S+ V YLL +F G FG+HRFY+ R SGV+YL T G F IG+ +D L+P +V YN
Sbjct: 3 QKSVCVTYLLWLFFGLFGIHRFYLNRPCSGVLYLFTCGCFFIGWFIDICLIPGMVEDYNA 62
Query: 310 KHHDHTTVIVSPTPVVYQ 363
K+ + T VV Q
Sbjct: 63 KYDSMNKTTTTVTQVVVQ 80
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3268448
Number of Hits to DB: 588,772,157
Number of extensions: 9257902
Number of successful extensions: 33079
Number of sequences better than 10.0: 155
Number of HSP's gapped: 33054
Number of HSP's successfully gapped: 176
Length of query: 239
Length of database: 1,061,185,681
Length adjustment: 125
Effective length of query: 114
Effective length of database: 652,629,681
Effective search space: 74399783634
Effective search space used: 74399783634
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 31 (16.5 bits)
|
| PSORT |
|
| VS (DIR, S) |
0 |
| VH (FL, L) |
0 |
| VF (FL, S) |
0 |
| AH (FL, L) |
0 |
| AF (FL, S) |
0 |
| SL (DIR, L) |
0 |
| SS (DIR, S) |
5 |
| SH (FL, L) |
0 |
| SF (FL, S) |
0 |
| CH (FL, L) |
0 |
| CF (FL, S) |
0 |
| FCL (DIR, L) |
0 |
| FC (DIR, S) |
0 |
| FC-IC (SUB) |
0 |