Contig-U04535-1
Contig ID Contig-U04535-1
Contig update 2002. 9.13
Contig sequence
>Contig-U04535-1 (Contig-U04535-1Q) /CSM_Contig/Contig-U04535-1Q.Seq.d
CACAAATAAAATAAAGAATAATAGAATGTTTTTAGTTGACTATTATAACT
ATCTTTCTGAAAGATATGATTATTATTTAACATTAAGAGATGAAAGAGTA
TTAAATTGGCCATTAATTAATAGACCACATGAAATGATATATTTAGTTAT
TGGATATTTTGCAATCATATTTTTTGGTCAAAAGATAATGAAGAAACAAA
AACCATTCGAATTGAGGTATCCATTAATTATTCATAATGTGGTTTGTACA
TTATTAAGTTTATATATGACTATTGAAATTACATATCAAGCAT

Gap no gap
Contig length 293
Chromosome number (1..6, M) -
Chromosome length -
Start point -
End point -
Strand (PLUS/MINUS) -
Number of clones 1
Number of EST 1
Link to clone list U04535
List of clone(s)

est1=SSB334F,1,294
Translated Amino Acid sequence
TNKIKNNRMFLVDYYNYLSERYDYYLTLRDERVLNWPLINRPHEMIYLVIGYFAIIFFGQ
KIMKKQKPFELRYPLIIHNVVCTLLSLYMTIEITYQA


Translated Amino Acid sequence (All Frames)
Frame A:
hk*nke**nvfs*ll*lsf*ki*llfnikr*ksiklain**tt*ndifsywifcnhifws
kdneetktirievsinys*cglyiikfiydy*nyiss


Frame B:
TNKIKNNRMFLVDYYNYLSERYDYYLTLRDERVLNWPLINRPHEMIYLVIGYFAIIFFGQ
KIMKKQKPFELRYPLIIHNVVCTLLSLYMTIEITYQA


Frame C:
qik*riiecf*ltiitiflkdmiii*h*emkey*igh*lidhmk*yi*lldilqsyflvk
r**rnknhsn*gih*lfimwfvhy*vyi*llklhikh


own update 2004. 6.10
Homology vs CSM-cDNA
Query= Contig-U04535-1 (Contig-U04535-1Q)
/CSM_Contig/Contig-U04535-1Q.Seq.d
(293 letters)

Database: CSM
6905 sequences; 5,674,871 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U04535-1 (Contig-U04535-1Q) /CSM_Contig/Conti... 581 e-166
Contig-U11354-1 (Contig-U11354-1Q) /CSM_Contig/Conti... 38 0.005
Contig-U09053-1 (Contig-U09053-1Q) /CSM_Contig/Conti... 38 0.005
Contig-U11472-1 (Contig-U11472-1Q) /CSM_Contig/Conti... 36 0.020
Contig-U11260-1 (Contig-U11260-1Q) /CSM_Contig/Conti... 36 0.020
Contig-U04689-1 (Contig-U04689-1Q) /CSM_Contig/Conti... 36 0.020
Contig-U11473-1 (Contig-U11473-1Q) /CSM_Contig/Conti... 34 0.079
Contig-U02455-1 (Contig-U02455-1Q) /CSM_Contig/Conti... 34 0.079
Contig-U14896-1 (Contig-U14896-1Q) /CSM_Contig/Conti... 32 0.31
Contig-U14794-1 (Contig-U14794-1Q) /CSM_Contig/Conti... 32 0.31

>Contig-U04535-1 (Contig-U04535-1Q) /CSM_Contig/Contig-U04535-1Q.Seq.d
Length = 293

Score = 581 bits (293), Expect = e-166
Identities = 293/293 (100%)
Strand = Plus / Plus


Query: 1 cacaaataaaataaagaataatagaatgtttttagttgactattataactatctttctga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cacaaataaaataaagaataatagaatgtttttagttgactattataactatctttctga 60


Query: 61 aagatatgattattatttaacattaagagatgaaagagtattaaattggccattaattaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 aagatatgattattatttaacattaagagatgaaagagtattaaattggccattaattaa 120


Query: 121 tagaccacatgaaatgatatatttagttattggatattttgcaatcatattttttggtca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tagaccacatgaaatgatatatttagttattggatattttgcaatcatattttttggtca 180


Query: 181 aaagataatgaagaaacaaaaaccattcgaattgaggtatccattaattattcataatgt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 aaagataatgaagaaacaaaaaccattcgaattgaggtatccattaattattcataatgt 240


Query: 241 ggtttgtacattattaagtttatatatgactattgaaattacatatcaagcat 293
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 ggtttgtacattattaagtttatatatgactattgaaattacatatcaagcat 293


>Contig-U11354-1 (Contig-U11354-1Q) /CSM_Contig/Contig-U11354-1Q.Seq.d
Length = 1429

Score = 38.2 bits (19), Expect = 0.005
Identities = 19/19 (100%)
Strand = Plus / Plus


Query: 180 aaaagataatgaagaaaca 198
|||||||||||||||||||
Sbjct: 1168 aaaagataatgaagaaaca 1186


Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus


Query: 13 aaagaataatagaa 26
||||||||||||||
Sbjct: 985 aaagaataatagaa 998


>Contig-U09053-1 (Contig-U09053-1Q) /CSM_Contig/Contig-U09053-1Q.Seq.d
Length = 1231

Score = 38.2 bits (19), Expect = 0.005
Identities = 19/19 (100%)
Strand = Plus / Plus


Query: 178 tcaaaagataatgaagaaa 196
|||||||||||||||||||
Sbjct: 1083 tcaaaagataatgaagaaa 1101


Database: CSM
Posted date: Jun 9, 2004 7:35 PM
Number of letters in database: 5,674,871
Number of sequences in database: 6905

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7871
Number of Sequences: 6905
Number of extensions: 7871
Number of successful extensions: 3608
Number of sequences better than 10.0: 247
length of query: 293
length of database: 5,674,871
effective HSP length: 15
effective length of query: 278
effective length of database: 5,571,296
effective search space: 1548820288
effective search space used: 1548820288
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)
dna update 2009. 6.22
Homology vs DNA
Query= Contig-U04535-1 (Contig-U04535-1Q) /CSM_Contig/Contig-U04535-1Q.Seq.d
(293 letters)

Database: ddbj_A
102,105,510 sequences; 101,790,757,118 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(AU071370) Dictyostelium discoideum slug cDNA, clone SSB334. 476 e-130 1
(AF250284) Amsacta moorei entomopoxvirus, complete genome. 36 5e-04 9
(BM273478) PfESToaa51c12.y1 Plasmodium falciparum 3D7 gameto... 44 0.007 2
(AF165818) Guillardia theta nucleomorph chromosome 1, comple... 38 0.008 6
(AL663095) Mouse DNA sequence from clone RP23-211M16 on chro... 50 0.046 1
(AE014822) Plasmodium falciparum 3D7 chromosome 14 section 7... 34 0.058 7
(AC177200) Strongylocentrotus purpuratus clone R3-4018N23, W... 34 0.078 5
(AC114471) Rattus norvegicus clone CH230-57I22, *** SEQUENCI... 36 0.21 5
(AC223144) Bos taurus clone CH240-428F8, WORKING DRAFT SEQUE... 40 0.26 3
(BX294380) Zebrafish DNA sequence from clone DKEY-58N10 in l... 42 0.28 3
(CU019628) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 40 0.37 5
(BX470188) Zebrafish DNA sequence from clone DKEY-206F10 in ... 36 0.40 4
(AC224053) Bos taurus clone CH240-451C5, WORKING DRAFT SEQUE... 32 0.40 2
(AC170606) Bos taurus clone CH240-249H20, WORKING DRAFT SEQU... 32 0.41 2
(D50617) Saccharomyces cerevisiae chromosome VI complete DNA... 38 0.42 3
(DJ025874) Genome-wide DNA marker of Saccharomyces cerevisiae. 38 0.42 3
(EI365587) GM_WBc0120N24.r GM_WBc Glycine max genomic clone ... 42 0.56 2
(AE014832) Plasmodium falciparum 3D7 chromosome 10 section 4... 34 0.57 7
(AC112541) Rattus norvegicus clone CH230-9I19, WORKING DRAFT... 46 0.67 2
(AC119252) Mus musculus chromosome 8, clone RP24-279M13, com... 44 0.71 3
(AC133461) Mus musculus chromosome 15, clone RP23-52B2, comp... 46 0.72 1
(AC129678) Rattus norvegicus clone CH230-381L18, WORKING DRA... 46 0.72 1
(AC116854) Mus musculus chromosome 17 clone RP24-401D21 map ... 46 0.72 1
(AM633899) Entamoeba dispar GSS, clone dispar10a12.q1k. 46 0.72 1
(CX576541) TTE00034499 Amplicon Express - Conjugative Form T... 46 0.72 1
(FF573393) TTEFT27THC Tetrahymena thermophila conjugation cD... 46 0.72 1
(BX247886) Zebrafish DNA sequence from clone DKEY-253J12 in ... 36 0.78 6
(CR769766) Zebrafish DNA sequence from clone DKEY-207J12 in ... 36 0.79 6
(AM629972) Entamoeba dispar GSS, clone dispar49b04.p1k. 26 1.1 4
(AC224558) Bos taurus clone CH240-481M11, WORKING DRAFT SEQU... 40 1.3 4
(U02970) Prototheca wickerhamii 263-11 complete mitochondria... 38 1.4 5
(CU856302) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 1.5 2
(CU424463) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 34 1.5 4
(CR382400) Plasmodium falciparum chromosome 6, complete sequ... 40 1.5 5
(AC182816) Medicago truncatula chromosome 8 clone mth2-177f1... 38 1.6 3
(AC115612) Dictyostelium discoideum chromosome 2 map 6245135... 40 1.6 4
(AE014840) Plasmodium falciparum 3D7 chromosome 11 section 5... 36 1.7 5
(CU570708) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 36 1.7 5
(AL662954) Oryza sativa genomic DNA, chromosome 4, BAC clone... 38 1.8 2
(CP001056) Clostridium botulinum B str. Eklund 17B, complete... 36 1.8 14
(AC141581) Rattus norvegicus clone CH230-506D19, WORKING DRA... 40 1.8 2
(BJ351698) Dictyostelium discoideum cDNA clone:dda44g10, 3' ... 38 1.9 2
(AC202680) Macaca mulatta clone CH250-38D15, WORKING DRAFT S... 38 2.0 2
(BJ381446) Dictyostelium discoideum cDNA clone:ddc41e14, 3' ... 38 2.0 2
(BJ379953) Dictyostelium discoideum cDNA clone:ddc36e15, 3' ... 38 2.2 2
(AC107568) Rattus norvegicus clone CH230-128H2, WORKING DRAF... 40 2.2 2
(AC137220) Rattus norvegicus clone CH230-unknown, *** SEQUEN... 40 2.2 2
(CR382398) Plasmodium falciparum chromosome 6, complete sequ... 34 2.2 7
(BJ445154) Dictyostelium discoideum cDNA clone:ddv58i16, 3' ... 38 2.3 2
(BJ434055) Dictyostelium discoideum cDNA clone:ddv23c22, 3' ... 38 2.4 2
(BJ354275) Dictyostelium discoideum cDNA clone:dda53i02, 3' ... 38 2.4 2
(AC218614) Bos taurus clone CH240-299E4, WORKING DRAFT SEQUE... 42 2.4 3
(BJ356193) Dictyostelium discoideum cDNA clone:dda59f15, 3' ... 38 2.5 2
(AL049183) Plasmodium falciparum DNA *** SEQUENCING IN PROGR... 34 2.6 6
(AM632950) Entamoeba dispar GSS, clone dispar96c03.q1k. 36 2.7 2
(AL645907) Mouse DNA sequence from clone RP23-9N7 on chromos... 44 2.8 1
(AC182231) Mus musculus BAC clone RP23-356C18 from chromosom... 44 2.8 1
(AP006653) Lotus japonicus genomic DNA, chromosome 2, clone:... 44 2.8 1
(Z83228) Caenorhabditis elegans Cosmid F52F12. 44 2.8 1
(AC025561) Homo sapiens BAC clone RP11-673E21 from 4, comple... 44 2.8 1
(CU695153) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 2.8 1
(AP008183) Lotus japonicus genomic DNA, chromosome 2, clone:... 44 2.8 1
(AL591971) Mouse DNA sequence *** SEQUENCING CANCELLED *** f... 44 2.8 1
(AC215964) Procavia capensis clone CH280-270K11, WORKING DRA... 44 2.8 1
(AC184209) Strongylocentrotus purpuratus clone R3-3030E1, WO... 44 2.8 1
(AC181479) Strongylocentrotus purpuratus clone R3-51K19, WOR... 44 2.8 1
(EK416492) 1095515467686 Global-Ocean-Sampling_GS-31-01-01-1... 44 2.8 1
(EJ670988) 1092955057446 Global-Ocean-Sampling_GS-30-02-01-1... 44 2.8 1
(EJ650036) 1092953007643 Global-Ocean-Sampling_GS-30-02-01-1... 44 2.8 1
(CT358080) Sus scrofa genomic clone CH242-309K23, genomic su... 44 2.8 1
(CK632861) AM2-AP0009-151201-022-H12 AP0009 Apis mellifera c... 44 2.8 1
(BM274684) PfESToaa73d11.y1 Plasmodium falciparum 3D7 gameto... 44 2.8 1
(CP001176) Bacillus cereus B4264, complete genome. 44 2.8 1
(AC211024) Solanum lycopersicum chromosome 6 clone C06HBa001... 42 2.9 4
(CR548612) Paramecium tetraurelia macronuclear largest chrom... 34 2.9 10
(AC205927) Pongo abelii BAC clone CH276-388C14 from chromoso... 42 3.0 3
(AC160905) Dasypus novemcinctus clone VMRC5-116C3, WORKING D... 32 3.1 6
(CT990569) Zebrafish DNA sequence from clone DKEY-33H4 in li... 32 3.4 7
(CU606919) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 34 3.7 7
(AC068977) Homo sapiens chromosome 13 clone RP11-809O8, WORK... 32 4.1 5
(AC209194) Populus trichocarpa clone POP091-C08, complete se... 40 4.4 2
(DQ863292) Solanum lycopersicum Mi-1E and Mi-1F genes, parti... 42 4.8 2
(AX344570) Sequence 21 from Patent WO0200932. 32 4.8 5
(AL731633) Oryza sativa genomic DNA, chromosome 4, BAC clone... 36 4.9 3
(AC007264) Arabidopsis thaliana chromosome 2 clone F12P23 ma... 38 5.1 3
(AM632797) Entamoeba dispar GSS, clone dispar94e10.p1k. 30 5.2 3
(BX248136) Zebrafish DNA sequence from clone DKEY-81B15 in l... 32 5.3 2
(CR954229) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 32 5.3 2
(CU914316) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 32 5.3 6
(CR954225) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 32 5.4 2
(CR382401) Plasmodium falciparum chromosome 6, complete sequ... 34 5.5 7
(BX001021) Zebrafish DNA sequence from clone BUSM1-140K9 in ... 32 5.5 2
(AC013351) Drosophila melanogaster clone BACR06H06, complete... 40 5.5 4
(DX924979) Bst5kb000721 bstricta5kb Boechera stricta genomic... 30 5.9 3
(AC098833) Oryza sativa Japonica Group chromosome 5 clone OJ... 36 6.3 4
(AC023335) Homo sapiens chromosome 5 clone RP11-756N1 map 5,... 36 6.3 4
(AP004037) Oryza sativa Japonica Group genomic DNA, chromoso... 36 6.5 5
(AC220300) Bos taurus clone CH240-369A22, WORKING DRAFT SEQU... 36 7.1 2
(CO217017) WS0046.B21_O05 SS-R-A-5 Picea sitchensis cDNA clo... 34 7.4 2
(AL954136) Zebrafish DNA sequence from clone CH211-220E11. 34 7.5 5
(CU407121) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 38 7.7 5
(BJ355646) Dictyostelium discoideum cDNA clone:dda57d19, 3' ... 38 7.8 2
(FK720958) av01047a19r1.1 Symbiotic sea anemone (Anemonia vi... 32 8.0 2
(FK734048) av02126b02r1.1 Symbiotic sea anemone (Anemonia vi... 32 8.4 2
(AP003563) Oryza sativa Japonica Group genomic DNA, chromoso... 36 8.9 3
(AL603906) Human DNA sequence from clone RP11-191O20 on chro... 40 9.2 2
(BX465201) Zebrafish DNA sequence from clone DKEY-15F11 in l... 40 9.3 2
(CJ457359) Macaca fascicularis mRNA, clone: QflA-23238, 5' e... 38 9.5 2
(AP004883) Oryza sativa Japonica Group genomic DNA, chromoso... 36 9.5 5
(CR759775) Zebrafish DNA sequence from clone DKEY-267D17 in ... 36 9.6 3
(FH539316) CHO_OF4769xg19f1.ab1 CHO_OF4 Nicotiana tabacum ge... 34 9.7 2
(AC201308) Strongylocentrotus purpuratus clone R3-16J23, WOR... 36 9.7 4
(AC208629) Zea mays chromosome 2 clone CH201-239H18; ZMMBBc0... 36 9.8 3
(AC153723) Bos taurus clone CH240-14D15, WORKING DRAFT SEQUE... 36 9.9 3

>(AU071370) Dictyostelium discoideum slug cDNA, clone SSB334.
Length = 240

Score = 476 bits (240), Expect = e-130
Identities = 240/240 (100%)
Strand = Plus / Plus


Query: 1 cacaaataaaataaagaataatagaatgtttttagttgactattataactatctttctga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cacaaataaaataaagaataatagaatgtttttagttgactattataactatctttctga 60


Query: 61 aagatatgattattatttaacattaagagatgaaagagtattaaattggccattaattaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 aagatatgattattatttaacattaagagatgaaagagtattaaattggccattaattaa 120


Query: 121 tagaccacatgaaatgatatatttagttattggatattttgcaatcatattttttggtca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tagaccacatgaaatgatatatttagttattggatattttgcaatcatattttttggtca 180


Query: 181 aaagataatgaagaaacaaaaaccattcgaattgaggtatccattaattattcataatgt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 aaagataatgaagaaacaaaaaccattcgaattgaggtatccattaattattcataatgt 240

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 102105510
Number of Hits to DB: 473,091,102
Number of extensions: 31903754
Number of successful extensions: 2765371
Number of sequences better than 10.0: 115
Length of query: 293
Length of database: 101,790,757,118
Length adjustment: 23
Effective length of query: 270
Effective length of database: 99,442,330,388
Effective search space: 26849429204760
Effective search space used: 26849429204760
X1: 11 (21.8 bits)
S2: 21 (42.1 bits)

protein update 2009. 7.30
Homology vs Protein
Query= Contig-U04535-1 (Contig-U04535-1Q) /CSM_Contig/Contig-U04535-1Q.Seq.d
(293 letters)

Database: nrp_A
3,268,448 sequences; 1,061,185,681 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

AY318871_68(AY318871|pid:none) Canarypox virus strain ATCC VR-11... 57 2e-07
DQ216939_1(DQ216939|pid:none) Taeniopygia guttata clone 0064P001... 56 3e-07
(Q9EQC4) RecName: Full=Elongation of very long chain fatty acids... 56 5e-07
BC051608_1(BC051608|pid:none) Danio rerio ELOVL family member 7,... 55 1e-06
GQ258117_1(GQ258117|pid:none) Monopterus albus polyunsaturated f... 54 1e-06
BC152203_1(BC152203|pid:none) Danio rerio elongation of very lon... 53 3e-06
AF465520_1(AF465520|pid:none) Scophthalmus maximus polyunsaturat... 53 3e-06
BC059658_1(BC059658|pid:none) Danio rerio zgc:73341, mRNA (cDNA ... 53 3e-06
BC080108_1(BC080108|pid:none) Xenopus laevis MGC84669 protein, m... 53 3e-06
FJ156735_1(FJ156735|pid:none) Thunnus maccoyii fatty acid elonga... 53 4e-06
BC155205_1(BC155205|pid:none) Danio rerio elongation of very lon... 53 4e-06
BC049330_1(BC049330|pid:none) Danio rerio elongation of very lon... 53 4e-06
DQ439986_1(DQ439986|pid:none) Aedes aegypti clone AE-11159 fatty... 52 5e-06
BC155281_1(BC155281|pid:none) Danio rerio ELOVL family member 7,... 52 7e-06
EU747336_1(EU747336|pid:none) Sus scrofa elongase mRNA, partial ... 52 9e-06
AY660880_1(AY660880|pid:none) Clarias gariepinus fatty acid elon... 52 9e-06
DQ067616_1(DQ067616|pid:none) Oncorhynchus masou putative polyun... 52 9e-06
AY605100_1(AY605100|pid:none) Oncorhynchus mykiss polyunsaturate... 52 9e-06
AY660879_1(AY660879|pid:none) Sparus aurata fatty acid elongase ... 52 9e-06
(Q2KJD9) RecName: Full=Elongation of very long chain fatty acids... 52 9e-06
FJ952143_1(FJ952143|pid:none) Nibea mitsukurii polyunsaturated f... 51 1e-05
AE014296_2019(AE014296|pid:none) Drosophila melanogaster chromos... 51 1e-05
BT022647_1(BT022647|pid:none) Drosophila melanogaster IP07720 fu... 51 1e-05
AY660881_1(AY660881|pid:none) Gadus morhua fatty acid elongase m... 51 1e-05
FJ440239_1(FJ440239|pid:none) Rachycentron canadum polyunsaturat... 51 1e-05
AK045274_1(AK045274|pid:none) Mus musculus 9.5 days embryo parth... 50 2e-05
BC083417_1(BC083417|pid:none) Danio rerio elongation of very lon... 50 3e-05
BX323588_5(BX323588|pid:none) Zebrafish DNA sequence from clone ... 50 3e-05
(Q8BHI7) RecName: Full=Elongation of very long chain fatty acids... 49 4e-05
(Q9NYP7) RecName: Full=Elongation of very long chain fatty acids... 49 4e-05
AK088153_1(AK088153|pid:none) Mus musculus 2 days neonate thymus... 49 4e-05
FN357308_40(FN357308|pid:none) Schistosoma mansoni genome sequen... 49 4e-05
AB209798_1(AB209798|pid:none) Homo sapiens mRNA for homolog of y... 49 4e-05
(Q4R516) RecName: Full=Elongation of very long chain fatty acids... 49 4e-05
BC100190_1(BC100190|pid:none) Xenopus laevis hypothetical protei... 49 6e-05
EU570221_1(EU570221|pid:none) Channa striata polyunsaturated fat... 49 6e-05
(Q920L7) RecName: Full=Elongation of very long chain fatty acids... 49 7e-05
BT078466_1(BT078466|pid:none) Lepeophtheirus salmonis Pacific fo... 48 9e-05
AY170326_1(AY170326|pid:none) Oreochromis niloticus putative pol... 47 2e-04
BT076206_1(BT076206|pid:none) Caligus rogercresseyi clone crog-e... 47 2e-04
BC072173_1(BC072173|pid:none) Xenopus laevis hypothetical protei... 47 2e-04
AB264656_1(AB264656|pid:none) Papilio xuthus mRNA for similar to... 47 3e-04
(Q32NI8) RecName: Full=Elongation of very long chain fatty acids... 47 3e-04
BT080322_1(BT080322|pid:none) Caligus clemensi clone ccle-evs-51... 47 3e-04
DQ472676_1(DQ472676|pid:none) Bufo gargarizans fatty acid elonga... 46 4e-04
AK302948_1(AK302948|pid:none) Homo sapiens cDNA FLJ52813 complet... 46 4e-04
(A1L3X0) RecName: Full=Elongation of very long chain fatty acids... 46 4e-04
BC044967_1(BC044967|pid:none) Xenopus laevis hypothetical protei... 46 5e-04
AY605098_1(AY605098|pid:none) Xenopus laevis polyunsaturated fat... 46 5e-04
DQ102382_1(DQ102382|pid:none) Symphysodon aequifasciata liver po... 45 6e-04
(Q5M8U1) RecName: Full=Elongation of very long chain fatty acids... 45 6e-04
AF532782_1(AF532782|pid:none) Danio rerio polyunsaturated fatty ... 45 6e-04
AK298163_1(AK298163|pid:none) Homo sapiens cDNA FLJ51720 complet... 45 8e-04
BT076352_1(BT076352|pid:none) Caligus rogercresseyi clone crog-e... 45 0.001
AK001653_1(AK001653|pid:none) Homo sapiens cDNA FLJ10791 fis, cl... 45 0.001
BC095456_1(BC095456|pid:none) Homo sapiens elongation of very lo... 45 0.001
(Q9BW60) RecName: Full=Elongation of very long chain fatty acids... 45 0.001
(Q9JLJ5) RecName: Full=Elongation of very long chain fatty acids... 45 0.001
AF151846_1(AF151846|pid:none) Homo sapiens CGI-88 protein mRNA, ... 45 0.001
AK222498_1(AK222498|pid:none) Homo sapiens mRNA for elongation o... 45 0.001
BC054983_1(BC054983|pid:none) Xenopus laevis hypothetical protei... 44 0.001
BT076365_1(BT076365|pid:none) Caligus rogercresseyi clone crog-e... 44 0.001
BC154147_1(BC154147|pid:none) Danio rerio zgc:112263, mRNA (cDNA... 44 0.002
CT025742_10(CT025742|pid:none) Zebrafish DNA sequence from clone... 43 0.003
AB170105_1(AB170105|pid:none) Macaca fascicularis brain cDNA clo... 43 0.003
BT080790_1(BT080790|pid:none) Caligus clemensi clone ccle-evs-50... 43 0.003
CT025742_12(CT025742|pid:none) Zebrafish DNA sequence from clone... 43 0.003
AF336793_1(AF336793|pid:none) Homo sapiens SSC1/ELOVL1 mRNA, com... 43 0.004
CR760398_1(CR760398|pid:none) Xenopus tropicalis finished cDNA, ... 43 0.004
AF206662_1(AF206662|pid:none) Mortierella alpina long chain poly... 42 0.005
AE014297_3312(AE014297|pid:none) Drosophila melanogaster chromos... 42 0.005
(P25358) RecName: Full=Elongation of fatty acids protein 2; AltN... 42 0.007
AE014297_3303(AE014297|pid:none) Drosophila melanogaster chromos... 42 0.009
AE014297_3304(AE014297|pid:none) Drosophila melanogaster chromos... 42 0.009
AK037162_1(AK037162|pid:none) Mus musculus 6 days neonate skin c... 42 0.009
AB238914_1(AB238914|pid:none) Physcomitrella patens PSE1 gene fo... 41 0.012
CU640366_1226(CU640366|pid:none) Podospora anserina genomic DNA ... 40 0.020
BX294020_14(BX294020|pid:none) Neurospora crassa DNA linkage gro... 40 0.026
FN357422_17(FN357422|pid:none) Schistosoma mansoni genome sequen... 40 0.026
BT078005_1(BT078005|pid:none) Lepeophtheirus salmonis Pacific fo... 40 0.026
EU835909_1(EU835909|pid:none) Amylomyces rouxii strain ATCC 2490... 40 0.033
AE017343_12(AE017343|pid:none) Cryptococcus neoformans var. neof... 39 0.044
AC116957_93(AC116957|pid:none) Dictyostelium discoideum chromoso... 39 0.044
AB449110_1(AB449110|pid:none) Mortierella alpina MAELO gene for ... 39 0.057
AF268031_1(AF268031|pid:none) Mortierella alpina long chain fatt... 39 0.057
BT077152_1(BT077152|pid:none) Caligus rogercresseyi clone crog-e... 39 0.057
CR382128_803(CR382128|pid:none) Yarrowia lipolytica strain CLIB1... 39 0.075
AM920436_1883(AM920436|pid:none) Penicillium chrysogenum Wiscons... 39 0.075
CT005253_78(CT005253|pid:none) Leishmania major strain Friedlin,... 39 0.075
AK029029_1(AK029029|pid:none) Mus musculus 10 days neonate skin ... 38 0.097
(Q920L5) RecName: Full=Elongation of very long chain fatty acids... 38 0.097
(P39540) RecName: Full=Elongation of fatty acids protein 1; &S4... 38 0.097
FJ039819_1(FJ039819|pid:none) Aureobasidium pullulans var. melan... 38 0.13
FJ039820_1(FJ039820|pid:none) Aureobasidium pullulans var. melan... 38 0.13
BC148954_1(BC148954|pid:none) Bos taurus hypothetical LOC533333,... 38 0.13
FJ039810_1(FJ039810|pid:none) Aureobasidium pullulans var. melan... 37 0.17
(Q5ZJR8) RecName: Full=Elongation of very long chain fatty acids... 37 0.17
BT081143_1(BT081143|pid:none) Caligus clemensi clone ccle-evs-51... 37 0.17
BT077312_1(BT077312|pid:none) Caligus rogercresseyi clone crog-e... 37 0.17
FJ039812_1(FJ039812|pid:none) Aureobasidium pullulans var. melan... 37 0.17
(Q6PC64) RecName: Full=Elongation of very long chain fatty acids... 37 0.17
CR382123_151(CR382123|pid:none) Kluyveromyces lactis strain NRRL... 37 0.22
FJ039813_1(FJ039813|pid:none) Aureobasidium pullulans var. melan... 37 0.22
FJ039823_1(FJ039823|pid:none) Kabatiella microsticta strain CBS ... 37 0.28
AE014297_100(AE014297|pid:none) Drosophila melanogaster chromoso... 37 0.28
FJ039847_1(FJ039847|pid:none) Selenophoma mahoniae strain CBS 38... 37 0.28
FJ039816_1(FJ039816|pid:none) Aureobasidium pullulans var. melan... 37 0.28
AE013599_2923(AE013599|pid:none) Drosophila melanogaster chromos... 37 0.28
FJ039841_1(FJ039841|pid:none) Aureobasidium pullulans var. nov. ... 36 0.37
EF123104_1(EF123104|pid:none) Aureobasidium pullulans putative f... 36 0.37
GM840770_1(GM840770|pid:none) Sequence 410 from Patent WO2008124... 36 0.48
GM840543_1(GM840543|pid:none) Sequence 183 from Patent WO2008124... 36 0.48
AE016819_857(AE016819|pid:none) Ashbya gossypii (= Eremothecium ... 35 0.63
AM502223_117(AM502223|pid:none) Leishmania infantum chromosome 5. 35 0.63
CU928170_156(CU928170|pid:none) Kluyveromyces thermotolerans str... 35 0.82
FJ039848_1(FJ039848|pid:none) Kabatiella microsticta strain CBS ... 35 0.82
AY525762_2(AY525762|pid:none) Aspergillus tubingensis NADH dehyd... 35 1.1
AE014297_3541(AE014297|pid:none) Drosophila melanogaster chromos... 35 1.1
AE014297_3374(AE014297|pid:none) Drosophila melanogaster chromos... 34 1.8
AM910984_42(AM910984|pid:none) Plasmodium knowlesi strain H chro... 33 2.4
CP000685_1482(CP000685|pid:none) Flavobacterium johnsoniae UW101... 33 2.4
AE013599_982(AE013599|pid:none) Drosophila melanogaster chromoso... 33 3.1
CU928168_569(CU928168|pid:none) Kluyveromyces thermotolerans str... 33 3.1
CR380958_355(CR380958|pid:none) Candida glabrata strain CBS138 c... 33 4.1
CP000123_707(CP000123|pid:none) Mycoplasma capricolum subsp. cap... 33 4.1
AL929357_41(AL929357|pid:none) Plasmodium falciparum strain 3D7,... 32 7.0
AM989988_4(AM989988|pid:none) Zygosaccharomyces rouxii strain CB... 32 9.1
CR382139_442(CR382139|pid:none) Debaryomyces hansenii strain CBS... 32 9.1
AY576803_1(AY576803|pid:none) Hortaea werneckii putative fatty a... 32 9.1

>AY318871_68(AY318871|pid:none) Canarypox virus strain ATCC VR-111,
complete genome.
Length = 257

Score = 57.4 bits (137), Expect = 2e-07
Identities = 28/74 (37%), Positives = 45/74 (60%)
Frame = +2

Query: 59 ERYDYYLTLRDERVLNWPLINRPHEMIYLVIGYFAIIFFGQKIMKKQKPFELRYPLIIHN 238
E Y++ LT+RD+RV +W L+N P I++ Y ++ G K+MK K ELR+ L+I+N
Sbjct: 3 EFYNWALTVRDKRVDDWLLMNSPLPTIFISTIYLITVWLGPKLMKNIKAMELRWVLVIYN 62

Query: 239 VVCTLLSLYMTIEI 280
L+ Y+ E+
Sbjct: 63 FSMVYLNFYIVKEL 76

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3268448
Number of Hits to DB: 475,447,930
Number of extensions: 10318547
Number of successful extensions: 20958
Number of sequences better than 10.0: 129
Number of HSP's gapped: 20948
Number of HSP's successfully gapped: 129
Length of query: 97
Length of database: 1,061,185,681
Length adjustment: 66
Effective length of query: 31
Effective length of database: 845,468,113
Effective search space: 26209511503
Effective search space used: 26209511503
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 28 (15.4 bits)

PSORT

psg: 0.72 gvh: 0.33 alm: 0.31 top: 0.23 tms: 0.07 mit: 0.24 mip: 0.03
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 1.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

24.0 %: endoplasmic reticulum
20.0 %: cytoplasmic
20.0 %: mitochondrial
16.0 %: nuclear
8.0 %: Golgi
4.0 %: plasma membrane
4.0 %: vesicles of secretory system
4.0 %: extracellular, including cell wall

>> prediction for Contig-U04535-1 is end

VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 1
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0