Homology vs CSM-cDNA |
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Homology vs DNA |
Query= Contig-U04535-1 (Contig-U04535-1Q) /CSM_Contig/Contig-U04535-1Q.Seq.d (293 letters)
Database: ddbj_A 102,105,510 sequences; 101,790,757,118 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value N
(AU071370) Dictyostelium discoideum slug cDNA, clone SSB334. 476 e-130 1 (AF250284) Amsacta moorei entomopoxvirus, complete genome. 36 5e-04 9 (BM273478) PfESToaa51c12.y1 Plasmodium falciparum 3D7 gameto... 44 0.007 2 (AF165818) Guillardia theta nucleomorph chromosome 1, comple... 38 0.008 6 (AL663095) Mouse DNA sequence from clone RP23-211M16 on chro... 50 0.046 1 (AE014822) Plasmodium falciparum 3D7 chromosome 14 section 7... 34 0.058 7 (AC177200) Strongylocentrotus purpuratus clone R3-4018N23, W... 34 0.078 5 (AC114471) Rattus norvegicus clone CH230-57I22, *** SEQUENCI... 36 0.21 5 (AC223144) Bos taurus clone CH240-428F8, WORKING DRAFT SEQUE... 40 0.26 3 (BX294380) Zebrafish DNA sequence from clone DKEY-58N10 in l... 42 0.28 3 (CU019628) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 40 0.37 5 (BX470188) Zebrafish DNA sequence from clone DKEY-206F10 in ... 36 0.40 4 (AC224053) Bos taurus clone CH240-451C5, WORKING DRAFT SEQUE... 32 0.40 2 (AC170606) Bos taurus clone CH240-249H20, WORKING DRAFT SEQU... 32 0.41 2 (D50617) Saccharomyces cerevisiae chromosome VI complete DNA... 38 0.42 3 (DJ025874) Genome-wide DNA marker of Saccharomyces cerevisiae. 38 0.42 3 (EI365587) GM_WBc0120N24.r GM_WBc Glycine max genomic clone ... 42 0.56 2 (AE014832) Plasmodium falciparum 3D7 chromosome 10 section 4... 34 0.57 7 (AC112541) Rattus norvegicus clone CH230-9I19, WORKING DRAFT... 46 0.67 2 (AC119252) Mus musculus chromosome 8, clone RP24-279M13, com... 44 0.71 3 (AC133461) Mus musculus chromosome 15, clone RP23-52B2, comp... 46 0.72 1 (AC129678) Rattus norvegicus clone CH230-381L18, WORKING DRA... 46 0.72 1 (AC116854) Mus musculus chromosome 17 clone RP24-401D21 map ... 46 0.72 1 (AM633899) Entamoeba dispar GSS, clone dispar10a12.q1k. 46 0.72 1 (CX576541) TTE00034499 Amplicon Express - Conjugative Form T... 46 0.72 1 (FF573393) TTEFT27THC Tetrahymena thermophila conjugation cD... 46 0.72 1 (BX247886) Zebrafish DNA sequence from clone DKEY-253J12 in ... 36 0.78 6 (CR769766) Zebrafish DNA sequence from clone DKEY-207J12 in ... 36 0.79 6 (AM629972) Entamoeba dispar GSS, clone dispar49b04.p1k. 26 1.1 4 (AC224558) Bos taurus clone CH240-481M11, WORKING DRAFT SEQU... 40 1.3 4 (U02970) Prototheca wickerhamii 263-11 complete mitochondria... 38 1.4 5 (CU856302) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 1.5 2 (CU424463) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 34 1.5 4 (CR382400) Plasmodium falciparum chromosome 6, complete sequ... 40 1.5 5 (AC182816) Medicago truncatula chromosome 8 clone mth2-177f1... 38 1.6 3 (AC115612) Dictyostelium discoideum chromosome 2 map 6245135... 40 1.6 4 (AE014840) Plasmodium falciparum 3D7 chromosome 11 section 5... 36 1.7 5 (CU570708) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 36 1.7 5 (AL662954) Oryza sativa genomic DNA, chromosome 4, BAC clone... 38 1.8 2 (CP001056) Clostridium botulinum B str. Eklund 17B, complete... 36 1.8 14 (AC141581) Rattus norvegicus clone CH230-506D19, WORKING DRA... 40 1.8 2 (BJ351698) Dictyostelium discoideum cDNA clone:dda44g10, 3' ... 38 1.9 2 (AC202680) Macaca mulatta clone CH250-38D15, WORKING DRAFT S... 38 2.0 2 (BJ381446) Dictyostelium discoideum cDNA clone:ddc41e14, 3' ... 38 2.0 2 (BJ379953) Dictyostelium discoideum cDNA clone:ddc36e15, 3' ... 38 2.2 2 (AC107568) Rattus norvegicus clone CH230-128H2, WORKING DRAF... 40 2.2 2 (AC137220) Rattus norvegicus clone CH230-unknown, *** SEQUEN... 40 2.2 2 (CR382398) Plasmodium falciparum chromosome 6, complete sequ... 34 2.2 7 (BJ445154) Dictyostelium discoideum cDNA clone:ddv58i16, 3' ... 38 2.3 2 (BJ434055) Dictyostelium discoideum cDNA clone:ddv23c22, 3' ... 38 2.4 2 (BJ354275) Dictyostelium discoideum cDNA clone:dda53i02, 3' ... 38 2.4 2 (AC218614) Bos taurus clone CH240-299E4, WORKING DRAFT SEQUE... 42 2.4 3 (BJ356193) Dictyostelium discoideum cDNA clone:dda59f15, 3' ... 38 2.5 2 (AL049183) Plasmodium falciparum DNA *** SEQUENCING IN PROGR... 34 2.6 6 (AM632950) Entamoeba dispar GSS, clone dispar96c03.q1k. 36 2.7 2 (AL645907) Mouse DNA sequence from clone RP23-9N7 on chromos... 44 2.8 1 (AC182231) Mus musculus BAC clone RP23-356C18 from chromosom... 44 2.8 1 (AP006653) Lotus japonicus genomic DNA, chromosome 2, clone:... 44 2.8 1 (Z83228) Caenorhabditis elegans Cosmid F52F12. 44 2.8 1 (AC025561) Homo sapiens BAC clone RP11-673E21 from 4, comple... 44 2.8 1 (CU695153) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 2.8 1 (AP008183) Lotus japonicus genomic DNA, chromosome 2, clone:... 44 2.8 1 (AL591971) Mouse DNA sequence *** SEQUENCING CANCELLED *** f... 44 2.8 1 (AC215964) Procavia capensis clone CH280-270K11, WORKING DRA... 44 2.8 1 (AC184209) Strongylocentrotus purpuratus clone R3-3030E1, WO... 44 2.8 1 (AC181479) Strongylocentrotus purpuratus clone R3-51K19, WOR... 44 2.8 1 (EK416492) 1095515467686 Global-Ocean-Sampling_GS-31-01-01-1... 44 2.8 1 (EJ670988) 1092955057446 Global-Ocean-Sampling_GS-30-02-01-1... 44 2.8 1 (EJ650036) 1092953007643 Global-Ocean-Sampling_GS-30-02-01-1... 44 2.8 1 (CT358080) Sus scrofa genomic clone CH242-309K23, genomic su... 44 2.8 1 (CK632861) AM2-AP0009-151201-022-H12 AP0009 Apis mellifera c... 44 2.8 1 (BM274684) PfESToaa73d11.y1 Plasmodium falciparum 3D7 gameto... 44 2.8 1 (CP001176) Bacillus cereus B4264, complete genome. 44 2.8 1 (AC211024) Solanum lycopersicum chromosome 6 clone C06HBa001... 42 2.9 4 (CR548612) Paramecium tetraurelia macronuclear largest chrom... 34 2.9 10 (AC205927) Pongo abelii BAC clone CH276-388C14 from chromoso... 42 3.0 3 (AC160905) Dasypus novemcinctus clone VMRC5-116C3, WORKING D... 32 3.1 6 (CT990569) Zebrafish DNA sequence from clone DKEY-33H4 in li... 32 3.4 7 (CU606919) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 34 3.7 7 (AC068977) Homo sapiens chromosome 13 clone RP11-809O8, WORK... 32 4.1 5 (AC209194) Populus trichocarpa clone POP091-C08, complete se... 40 4.4 2 (DQ863292) Solanum lycopersicum Mi-1E and Mi-1F genes, parti... 42 4.8 2 (AX344570) Sequence 21 from Patent WO0200932. 32 4.8 5 (AL731633) Oryza sativa genomic DNA, chromosome 4, BAC clone... 36 4.9 3 (AC007264) Arabidopsis thaliana chromosome 2 clone F12P23 ma... 38 5.1 3 (AM632797) Entamoeba dispar GSS, clone dispar94e10.p1k. 30 5.2 3 (BX248136) Zebrafish DNA sequence from clone DKEY-81B15 in l... 32 5.3 2 (CR954229) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 32 5.3 2 (CU914316) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 32 5.3 6 (CR954225) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 32 5.4 2 (CR382401) Plasmodium falciparum chromosome 6, complete sequ... 34 5.5 7 (BX001021) Zebrafish DNA sequence from clone BUSM1-140K9 in ... 32 5.5 2 (AC013351) Drosophila melanogaster clone BACR06H06, complete... 40 5.5 4 (DX924979) Bst5kb000721 bstricta5kb Boechera stricta genomic... 30 5.9 3 (AC098833) Oryza sativa Japonica Group chromosome 5 clone OJ... 36 6.3 4 (AC023335) Homo sapiens chromosome 5 clone RP11-756N1 map 5,... 36 6.3 4 (AP004037) Oryza sativa Japonica Group genomic DNA, chromoso... 36 6.5 5 (AC220300) Bos taurus clone CH240-369A22, WORKING DRAFT SEQU... 36 7.1 2 (CO217017) WS0046.B21_O05 SS-R-A-5 Picea sitchensis cDNA clo... 34 7.4 2 (AL954136) Zebrafish DNA sequence from clone CH211-220E11. 34 7.5 5 (CU407121) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 38 7.7 5 (BJ355646) Dictyostelium discoideum cDNA clone:dda57d19, 3' ... 38 7.8 2 (FK720958) av01047a19r1.1 Symbiotic sea anemone (Anemonia vi... 32 8.0 2 (FK734048) av02126b02r1.1 Symbiotic sea anemone (Anemonia vi... 32 8.4 2 (AP003563) Oryza sativa Japonica Group genomic DNA, chromoso... 36 8.9 3 (AL603906) Human DNA sequence from clone RP11-191O20 on chro... 40 9.2 2 (BX465201) Zebrafish DNA sequence from clone DKEY-15F11 in l... 40 9.3 2 (CJ457359) Macaca fascicularis mRNA, clone: QflA-23238, 5' e... 38 9.5 2 (AP004883) Oryza sativa Japonica Group genomic DNA, chromoso... 36 9.5 5 (CR759775) Zebrafish DNA sequence from clone DKEY-267D17 in ... 36 9.6 3 (FH539316) CHO_OF4769xg19f1.ab1 CHO_OF4 Nicotiana tabacum ge... 34 9.7 2 (AC201308) Strongylocentrotus purpuratus clone R3-16J23, WOR... 36 9.7 4 (AC208629) Zea mays chromosome 2 clone CH201-239H18; ZMMBBc0... 36 9.8 3 (AC153723) Bos taurus clone CH240-14D15, WORKING DRAFT SEQUE... 36 9.9 3
>(AU071370) Dictyostelium discoideum slug cDNA, clone SSB334. Length = 240
Score = 476 bits (240), Expect = e-130 Identities = 240/240 (100%) Strand = Plus / Plus
Query: 1 cacaaataaaataaagaataatagaatgtttttagttgactattataactatctttctga 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 cacaaataaaataaagaataatagaatgtttttagttgactattataactatctttctga 60
Query: 61 aagatatgattattatttaacattaagagatgaaagagtattaaattggccattaattaa 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61 aagatatgattattatttaacattaagagatgaaagagtattaaattggccattaattaa 120
Query: 121 tagaccacatgaaatgatatatttagttattggatattttgcaatcatattttttggtca 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 121 tagaccacatgaaatgatatatttagttattggatattttgcaatcatattttttggtca 180
Query: 181 aaagataatgaagaaacaaaaaccattcgaattgaggtatccattaattattcataatgt 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 181 aaagataatgaagaaacaaaaaccattcgaattgaggtatccattaattattcataatgt 240
Lambda K H 1.37 0.711 1.31
Matrix: blastn matrix:1 -3 Number of Sequences: 102105510 Number of Hits to DB: 473,091,102 Number of extensions: 31903754 Number of successful extensions: 2765371 Number of sequences better than 10.0: 115 Length of query: 293 Length of database: 101,790,757,118 Length adjustment: 23 Effective length of query: 270 Effective length of database: 99,442,330,388 Effective search space: 26849429204760 Effective search space used: 26849429204760 X1: 11 (21.8 bits) S2: 21 (42.1 bits)
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Homology vs Protein |
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