NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U04529-1
Contig ID Contig-U04529-1
Contig update 2002. 9.13
Contig sequence 
>Contig-U04529-1 (Contig-U04529-1Q) /CSM_Contig/Contig-U04529-1Q.Seq.d
CCCCACTGCGTTTATTCTTTTTAATTTTAATTTTTTTTTTTTTTTTTTTG
ATAAAAATTTGTATATACTATAATAACAGTCATAAAAAATTACAATAAAA
AAAAAAAATAGTAATAATAATAAAAAAGAAATAAAACATTAAAAATGCAA
GGAAGTTTATTAGGATCATTATTAATTAATGGTGGTAAAAAATTCAGTAC
ACCAGTCACACCATTCAAACAAAATAACTGTATTATTCCATCACAACCAT
TATTTAAACAAGCAACACAACAACAACAAATNTTACCATCAACTGAAAAT
GAAAATAAAATGGAAATTCCAACTGAAGAAGGTGAAATGGAATTAACAGC
TGTNCCAAAAAAGAGAGTCAGTTTTACAAGAAATAGAAAGAGAAACTNTT
CAAAGAAACACGAAAATNTTCACAACATTACCATTTGTCAAAAATGTAGT
ACACCAAAATTAANACATAACCTTTGCTNTGTTTGTTTAANAAANAATTC
AGTTTAAATTAATTTTAAAAAANTAAAAAAAATTTAAAAAAAAAAAAAGG
GG
Gap no gap
Contig length 552
Chromosome number (1..6, M) 5
Chromosome length 5062330
Start point 3878755
End point 3878290
Strand (PLUS/MINUS) MINUS
Number of clones 3
Number of EST 5
Link to clone list U04529
List of clone(s) 

est1=SSB319F,1,281
est2=VSH256F,1,106
est3=VSH608F,1,191
est4=VSH256Z,56,550
est5=VSH608Z,57,552
Translated Amino Acid sequence 
phcvysf*f*ffffff**kfvytiitviknynkkkk*****KRNKTLKMQGSLLGSLLIN
GGKKFSTPVTPFKQNNCIIPSQPLFKQATQQQQXLPSTENENKMEIPTEEGEMELTAVPK
KRVSFTRNRKRNXSKKHENXHNITICQKCSTPKLXHNLCXVCLXXNSV*infkkxkki*k
kkkg
Translated Amino Acid sequence (All Frames) 
Frame A:
phcvysf*f*ffffff**kfvytiitviknynkkkk*****KRNKTLKMQGSLLGSLLIN
GGKKFSTPVTPFKQNNCIIPSQPLFKQATQQQQXLPSTENENKMEIPTEEGEMELTAVPK
KRVSFTRNRKRNXSKKHENXHNITICQKCSTPKLXHNLCXVCLXXNSV*infkkxkki*k
kkkg


Frame B:
ptafilfnfnffffffdknlyil**qs*kitikkknsnnnkkeikh*kckevy*dhy*lm
vvknsvhqshhsnkitvlfhhnhylnkqhnnnkxyhqlkmkikwkfqlkkvkwn*qlxqk
resvlqeieretxqrntkxfttlpfvknvvhqn*xitfaxfv*xxiqfklilkx*kkfkk
kkr


Frame C:
plrlffliliffffflikiciyynnshkklq*kkkiviiikkk*niknarkfiriiin*w
w*kiqytshtiqtk*lyysittii*tsnttttnxtin*k*k*ngnsn*rr*nginscxkk
esqfykk*keklfketrkxsqhyhlskm*ytkixt*pllclfxkxfsln*f*kxkknlkk
kkg
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U04529-1 (Contig-U04529-1Q)
/CSM_Contig/Contig-U04529-1Q.Seq.d
         (552 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U04529-1 (Contig-U04529-1Q) /CSM_Contig/Conti...   636  0.0
Contig-U13852-1 (Contig-U13852-1Q) /CSM_Contig/Conti...    38  0.010
Contig-U10979-1 (Contig-U10979-1Q) /CSM_Contig/Conti...    38  0.010
Contig-U12580-1 (Contig-U12580-1Q) /CSM_Contig/Conti...    36  0.038
Contig-U10772-1 (Contig-U10772-1Q) /CSM_Contig/Conti...    36  0.038
Contig-U09266-1 (Contig-U09266-1Q) /CSM_Contig/Conti...    36  0.038
Contig-U02984-1 (Contig-U02984-1Q) /CSM_Contig/Conti...    36  0.038
Contig-U14573-1 (Contig-U14573-1Q) /CSM_Contig/Conti...    34  0.15
Contig-U14547-1 (Contig-U14547-1Q) /CSM_Contig/Conti...    34  0.15
Contig-U13453-1 (Contig-U13453-1Q) /CSM_Contig/Conti...    34  0.15

>Contig-U04529-1 (Contig-U04529-1Q) /CSM_Contig/Contig-U04529-1Q.Seq.d
          Length = 552

 Score =  636 bits (321), Expect = 0.0
 Identities = 339/339 (100%)
 Strand = Plus / Plus

                                                                       
Query: 146 tgcaaggaagtttattaggatcattattaattaatggtggtaaaaaattcagtacaccag 205
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146 tgcaaggaagtttattaggatcattattaattaatggtggtaaaaaattcagtacaccag 205

                                                                       
Query: 206 tcacaccattcaaacaaaataactgtattattccatcacaaccattatttaaacaagcaa 265
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 tcacaccattcaaacaaaataactgtattattccatcacaaccattatttaaacaagcaa 265

                                                                       
Query: 266 cacaacaacaacaaatnttaccatcaactgaaaatgaaaataaaatggaaattccaactg 325
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 cacaacaacaacaaatnttaccatcaactgaaaatgaaaataaaatggaaattccaactg 325

                                                                       
Query: 326 aagaaggtgaaatggaattaacagctgtnccaaaaaagagagtcagttttacaagaaata 385
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 aagaaggtgaaatggaattaacagctgtnccaaaaaagagagtcagttttacaagaaata 385

                                                                       
Query: 386 gaaagagaaactnttcaaagaaacacgaaaatnttcacaacattaccatttgtcaaaaat 445
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 gaaagagaaactnttcaaagaaacacgaaaatnttcacaacattaccatttgtcaaaaat 445

                                                  
Query: 446 gtagtacaccaaaattaanacataacctttgctntgttt 484
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 446 gtagtacaccaaaattaanacataacctttgctntgttt 484


 Score = 63.9 bits (32), Expect = 2e-10
 Identities = 32/32 (100%)
 Strand = Plus / Plus

                                          
Query: 50 gataaaaatttgtatatactataataacagtc 81
          ||||||||||||||||||||||||||||||||
Sbjct: 50 gataaaaatttgtatatactataataacagtc 81


 Score = 60.0 bits (30), Expect = 3e-09
 Identities = 30/30 (100%)
 Strand = Plus / Plus

                                        
Query: 1  ccccactgcgtttattctttttaattttaa 30
          ||||||||||||||||||||||||||||||
Sbjct: 1  ccccactgcgtttattctttttaattttaa 30


>Contig-U13852-1 (Contig-U13852-1Q) /CSM_Contig/Contig-U13852-1Q.Seq.d
          Length = 1299

 Score = 38.2 bits (19), Expect = 0.010
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 257 aacaagcaacacaacaacaacaa 279
           |||||||| ||||||||||||||
Sbjct: 73  aacaagcaccacaacaacaacaa 95


 Score = 28.2 bits (14), Expect = 9.4
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                         
Query: 266 cacaacaacaacaa 279
           ||||||||||||||
Sbjct: 64  cacaacaacaacaa 77


 Score = 28.2 bits (14), Expect = 9.4
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                         
Query: 267 acaacaacaacaaa 280
           ||||||||||||||
Sbjct: 89  acaacaacaacaaa 102


 Score = 28.2 bits (14), Expect = 9.4
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                         
Query: 266 cacaacaacaacaa 279
           ||||||||||||||
Sbjct: 808 cacaacaacaacaa 821


 Score = 28.2 bits (14), Expect = 9.4
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                         
Query: 268 caacaacaacaaat 281
           ||||||||||||||
Sbjct: 768 caacaacaacaaat 781


 Score = 28.2 bits (14), Expect = 9.4
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                         
Query: 266 cacaacaacaacaa 279
           ||||||||||||||
Sbjct: 205 cacaacaacaacaa 218


 Score = 28.2 bits (14), Expect = 9.4
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                         
Query: 266 cacaacaacaacaa 279
           ||||||||||||||
Sbjct: 592 cacaacaacaacaa 605


 Score = 28.2 bits (14), Expect = 9.4
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                         
Query: 267 acaacaacaacaaa 280
           ||||||||||||||
Sbjct: 29  acaacaacaacaaa 42


>Contig-U10979-1 (Contig-U10979-1Q) /CSM_Contig/Contig-U10979-1Q.Seq.d
          Length = 1392

 Score = 38.2 bits (19), Expect = 0.010
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 257 aacaagcaacacaacaacaacaa 279
           ||||||||| |||||||||||||
Sbjct: 118 aacaagcaaaacaacaacaacaa 140


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 15,031
Number of Sequences: 6905
Number of extensions: 15031
Number of successful extensions: 5316
Number of sequences better than 10.0: 720
length of query: 552
length of database: 5,674,871
effective HSP length: 16
effective length of query: 536
effective length of database: 5,564,391
effective search space: 2982513576
effective search space used: 2982513576
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)
dna update 2009. 6.22
Homology vs DNA 
Query= Contig-U04529-1 (Contig-U04529-1Q) /CSM_Contig/Contig-U04529-1Q.Seq.d
         (552 letters)

Database: ddbj_A
           102,105,510 sequences; 101,790,757,118 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU267149) Dictyostelium discoideum vegetative cDNA clone:VS...   668   0.0    2
(AU267701) Dictyostelium discoideum vegetative cDNA clone:VS...   632   e-180  2
(AU071366) Dictyostelium discoideum slug cDNA, clone SSB319.      184   1e-53  3
(AC010084) Homo sapiens BAC clone RP11-145J12 from Y, comple...    44   0.002  5
(AC107086) Rattus norvegicus clone CH230-200B21, *** SEQUENC...    42   0.045  4
(AL133328) Human DNA sequence from clone RP13-21D1 on chromo...    44   0.098  3
(AC194645) Pan troglodytes BAC clone CH251-501H10 from chrom...    44   0.14   3
(BV782230) pRRL2:Newb:20080411:154745 USMARC Pig Breed SNP D...    48   0.36   1
(EU162611) Capsella rubella clone contig46 BAC sequence.           44   0.37   2
(EE665543) 30123_re457 R. filosa cDNA library Reticulomyxa f...    34   1.0    2
(BX323079) Zebrafish DNA sequence from clone DKEYP-113D7 in ...    46   1.4    1
(AC116312) Homo sapiens chromosome 5 clone RP11-44B19, compl...    46   1.4    1
(AC011364) Homo sapiens chromosome 5 clone CTC-529P8, comple...    46   1.4    1
(AC119015) Rattus norvegicus clone CH230-466L18, *** SEQUENC...    46   1.4    1
(EK233978) 1095460193104 Global-Ocean-Sampling_GS-31-01-01-1...    46   1.4    1
(DX520902) GH_MBb0059M09r GH_MBb Gossypium hirsutum genomic ...    46   1.4    1
(DH823388) Rattus norvegicus DNA, BAC clone: RNB1-428A24, 3'...    46   1.4    1
(DH628747) Rattus norvegicus DNA, BAC clone: RNB1-164C17, 5'...    46   1.4    1
(DE904187) Macropus eugenii DNA, BAC clone: MEB1-085F09_F, 5...    46   1.4    1
(CO483784) GQ0206.TB_M20 GQ020: Clean ROOTS systems -Diurnal...    46   1.4    1
(CO478838) GQ0171.TB_O08 GQ017: Immature somatic EMBRYOS Pic...    46   1.4    1
(CK841794) UI-R-BJ0p-aio-f-05-0-UI.s10 UI-R-BJ0p Rattus norv...    46   1.4    1
(BX081656) AGENAE Rainbow trout multi-tissues normalized lib...    46   1.4    1
(AI266699) qn29f11.x1 NCI_CGAP_Kid5 Homo sapiens cDNA clone ...    46   1.4    1
(GE723688) CBUP3843.b1 B.anynana_wing.4-6d_2-10kb Bicyclus a...    46   1.4    1
(AW525168) UI-R-BJ0p-aio-f-05-0-UI.s1 UI-R-BJ0p Rattus norve...    46   1.4    1
(AC114858) Rattus norvegicus clone CH230-86H24, *** SEQUENCI...    40   2.2    3
(AC113704) Rattus norvegicus clone CH230-100C24, WORKING DRA...    40   2.2    3
(AC201497) Strongylocentrotus purpuratus clone R3-3069H20, W...    36   2.3    4
(AC025897) Homo sapiens chromosome 13 clone RP11-384P14 map ...    34   2.8    2
(AC046138) Homo sapiens chromosome 3 clone RP11-22K19, WORKI...    34   2.8    2
(AC093025) Homo sapiens 12 BAC RP11-384P14 (Roswell Park Can...    34   2.9    2
(AC154189) Mus musculus BAC clone RP24-458A18 from 17, compl...    38   2.9    5
(AM444698) Vitis vinifera contig VV78X202971.10, whole genom...    34   3.1    2
(EA729207) Sequence 108086 from patent US 7365185.                 42   3.3    2
(DX426751) BE1095_B08_F IASMA L1 HindIII BAC library Vitis v...    34   3.7    2
(EX225307) AsAmUn153H04.b Mosquito midgut cDNA Library Anoph...    34   3.9    2
(EA640414) Sequence 19293 from patent US 7365185.                  42   4.5    2
(EA640413) Sequence 19292 from patent US 7365185.                  42   4.5    2
(AC107026) Homo sapiens 3 BAC RP11-494I8 (Roswell Park Cance...    40   5.0    3
(AC114142) Rattus norvegicus clone CH230-140C23, *** SEQUENC...    42   5.3    4
(CR391948) Zebrafish DNA sequence from clone DKEY-42O15 in l...    34   5.5    5
(BV321522) S236P6403RC10.T0 AlaskanMalamute Canis familiaris...    44   5.6    1
(AM448975) Vitis vinifera contig VV78X229925.1, whole genome...    44   5.6    1
(AE013599) Drosophila melanogaster chromosome 2R, complete s...    44   5.6    1
(AC099014) Drosophila melanogaster, chromosome 2R, region 56...    44   5.6    1
(AC009738) Drosophila melanogaster clone BACR02J10, complete...    44   5.6    1
(AC005148) Drosophila melanogaster DNA sequence (P1s DS05759...    44   5.6    1
(AL445645) Human DNA sequence from clone RP11-295G24 on chro...    44   5.6    1
(AC132722) Rattus norvegicus clone CH230-26C2, WORKING DRAFT...    44   5.6    1
(AC131345) Rattus norvegicus clone CH230-5F10, WORKING DRAFT...    44   5.6    1
(AC112538) Rattus norvegicus clone CH230-140A23, *** SEQUENC...    44   5.6    1
(AC106381) Rattus norvegicus clone CH230-113I13, *** SEQUENC...    44   5.6    1
(AL161726) Human DNA sequence *** SEQUENCING CANCELLED *** f...    44   5.6    1
(AC220909) Bos taurus clone CH240-341K8, WORKING DRAFT SEQUE...    44   5.6    1
(AC220908) Bos taurus clone CH240-341K4, WORKING DRAFT SEQUE...    44   5.6    1
(AC216873) Zea mays chromosome unknown clone ZMMBBb-247M20; ...    44   5.6    1
(AC208407) Zea mays chromosome unknown clone CH201-127K10; Z...    44   5.6    1
(AC206651) Zea mays chromosome unknown clone CH201-501N5; ZM...    44   5.6    1
(AC203987) Zea mays chromosome unknown clone CH201-310P9; ZM...    44   5.6    1
(AC187038) Zea mays chromosome 8 clone CH201-15N1; ZMMBBc001...    44   5.6    1
(AC168490) Strongylocentrotus purpuratus clone R3-3117I17, W...    44   5.6    1
(AC167733) Bos taurus clone CH240-201K11, WORKING DRAFT SEQU...    44   5.6    1
(AC020279) Drosophila melanogaster, *** SEQUENCING IN PROGRE...    44   5.6    1
(AC002095) Homo sapiens chromosome 9 clone 81H10 map 9q34, *...    44   5.6    1
(FI448815) CH322-189B07.y CHORI-322 Drosophila melanogaster ...    44   5.6    1
(FI342689) CH321-25H18.y CHORI-321 Drosophila melanogaster g...    44   5.6    1
(FH572097) CHO_OF4239xj05f1.ab1 CHO_OF4 Nicotiana tabacum ge...    44   5.6    1
(ET737472) CHO_OF135xm13f1.ab1 CHO_OF Nicotiana tabacum geno...    44   5.6    1
(EK426428) 1095516031366 Global-Ocean-Sampling_GS-31-01-01-1...    44   5.6    1
(EJ438792) 1093015294090 Global-Ocean-Sampling_GS-28-01-01-1...    44   5.6    1
(DX536206) GH_MBb0051K17r GH_MBb Gossypium hirsutum genomic ...    44   5.6    1
(DU945538) 374379 Tomato EcoRI BAC Library Solanum lycopersi...    44   5.6    1
(CR827383) GR0AAA59BC06RM1 INRA BAC Bos taurus genomic clone...    44   5.6    1
(CG391390) ZMMBBc0574I12f ZMMBBc Zea mays subsp. mays genomi...    44   5.6    1
(CC837159) ZMMBBc0485G24f ZMMBBc Zea mays subsp. mays genomi...    44   5.6    1
(CC374217) PUHMM44TD ZM_0.6_1.0_KB Zea mays genomic clone ZM...    44   5.6    1
(CC066552) CSU-K33r.15J5.SP6 CSU-K33r Aedes aegypti genomic ...    44   5.6    1
(ES217667) MpFVN_ag1_I01 Myzus persicae, line F001, PLRV fre...    44   5.6    1
(EE571013) C06_C06fv4f11_pDNRf_531458 Myzus persicae, line F...    44   5.6    1
(EE570626) H02_H02fm3p4_pDNRf_532775 Myzus persicae, line F0...    44   5.6    1
(EE261764) E11_E11ff3g21_pDNRf_514268 Myzus persicae, line F...    44   5.6    1
(EC387986) E08_E08gm1g15_pDNRf_477102 Myzus persicae, line G...    44   5.6    1
(DV457519) CV02024B1G04.f1 CV02-normalized library Manihot e...    44   5.6    1
(AM525204) Paracentrotus lividus EST, clone MPMGp1171D0251Q,...    44   5.6    1
(AM524816) Paracentrotus lividus EST, clone MPMGp1171I2445Q,...    44   5.6    1
(AM515807) Paracentrotus lividus EST, clone MPMGp1171C1026Q,...    44   5.6    1
(AM507007) Paracentrotus lividus EST, clone MPMGp1171M1214Q,...    44   5.6    1
(AM505255) Paracentrotus lividus EST, clone MPMGp1171P183Q, ...    44   5.6    1
(FF667109) G826P5361RA9.T0 Acorn worm normalized juvenile pE...    44   5.6    1
(FF667108) G826P5361FA9.T0 Acorn worm normalized juvenile pE...    44   5.6    1
(FF666724) G826P5359FD11.T0 Acorn worm normalized juvenile p...    44   5.6    1
(FF661823) G826P5306FF5.T0 Acorn worm normalized juvenile pE...    44   5.6    1
(FF634225) G825P564FE1.T0 Acorn worm normalized gastrula pEx...    44   5.6    1
(FF569018) TTBC038TO Tetrahymena thermophila CU428 log phase...    44   5.6    1
(FF568505) TTBBM16TVB Tetrahymena thermophila CU428 log phas...    44   5.6    1
(FF533885) G710P55FD12.T0 Acorn worm normalized juvenile pEx...    44   5.6    1
(FF527668) G710P5343RA2.T0 Acorn worm normalized juvenile pE...    44   5.6    1
(FF506863) G709P5210RF9.T0 Acorn worm normalized neurula pEx...    44   5.6    1
(FF451865) G178P60146RG11.T0 Acorn worm gastrula/neurula pCM...    44   5.6    1
(FD339098) CBPN2090.g1 CBPN: Subtracted channel catfish cDNA...    44   5.6    1
(EV849110) FTSAW82TF Tetrahymena thermophila SB210 cDNA libr...    44   5.6    1
(EV845659) FTSCC88TF Tetrahymena thermophila SB210 cDNA libr...    44   5.6    1
(FP102325) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    34   5.6    6
(AC194974) Zea mays chromosome 5 clone CH201-115G11; ZMMBBc0...    42   5.8    2
(AC115598) Dictyostelium discoideum chromosome 2 map 581427-...    42   6.0    5
(AL589879) Mouse DNA sequence from clone RP23-38E20 on chrom...    42   6.6    2
(AC187042) Trichinella spiralis chromosome UNK clone TS195-2...    36   8.0    4
(BP949661) Bruguiera gymnorhiza mRNA, clone: Bg04-29_L08, 5'...    32   8.2    2
(BP949986) Bruguiera gymnorhiza mRNA, clone: Bg04-30_P09, 5'...    32   8.3    2
(AP009792) Lotus japonicus genomic DNA, clone: LjT42M11, TM2...    36   9.4    3
(EA679740) Sequence 58619 from patent US 7365185.                  42   9.6    2
(EA433533) Sequence 33 from patent US 7335469.                     32   9.6    2
(AC147232) Mus musculus BAC clone RP23-311C15 from 7, comple...    30   9.9    2
(FP102264) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    32   10.0   2
(AC117081) Dictyostelium discoideum chromosome 2 map 5862124...    30   10.0   2

>(AU267149) Dictyostelium discoideum vegetative cDNA clone:VSH256,
           3' end single read.
          Length = 495

 Score =  668 bits (337), Expect(2) = 0.0
 Identities = 367/370 (99%)
 Strand = Plus / Minus


Query: 147 gcaaggaagtttattaggatcattattaattaatggtggtaaaaaattcagtacaccagt 206
           |||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 406 gcaangaagtttattaggatcattattaattaatggnggtaaaaaattcagtacaccagt 347


Query: 207 cacaccattcaaacaaaataactgtattattccatcacaaccattatttaaacaagcaac 266
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 346 cacaccattcaaacaaaataactgtnttattccatcacaaccattatttaaacaagcaac 287


Query: 267 acaacaacaacaaatnttaccatcaactgaaaatgaaaataaaatggaaattccaactga 326
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 acaacaacaacaaatnttaccatcaactgaaaatgaaaataaaatggaaattccaactga 227


Query: 327 agaaggtgaaatggaattaacagctgtnccaaaaaagagagtcagttttacaagaaatag 386
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 226 agaaggtgaaatggaattaacagctgtnccaaaaaagagagtcagttttacaagaaatag 167


Query: 387 aaagagaaactnttcaaagaaacacgaaaatnttcacaacattaccatttgtcaaaaatg 446
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 166 aaagagaaactnttcaaagaaacacgaaaatnttcacaacattaccatttgtcaaaaatg 107


Query: 447 tagtacaccaaaattaanacataacctttgctntgtttgtttaanaaanaattcagttta 506
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 106 tagtacaccaaaattaanacataacctttgctntgtttgtttaanaaanaattcagttta 47


Query: 507 aattaatttt 516
           ||||||||||
Sbjct: 46  aattaatttt 37

 Score = 48.1 bits (24), Expect(2) = 0.0
 Identities = 24/24 (100%)
 Strand = Plus / Minus


Query: 58  tttgtatatactataataacagtc 81
           ||||||||||||||||||||||||
Sbjct: 495 tttgtatatactataataacagtc 472

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 102105510
Number of Hits to DB: 588,104,121
Number of extensions: 41763410
Number of successful extensions: 4996465
Number of sequences better than 10.0: 117
Length of query: 552
Length of database: 101,790,757,118
Length adjustment: 23
Effective length of query: 529
Effective length of database: 99,442,330,388
Effective search space: 52604992775252
Effective search space used: 52604992775252
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7.30
Homology vs Protein 
Query= Contig-U04529-1 (Contig-U04529-1Q) /CSM_Contig/Contig-U04529-1Q.Seq.d
         (552 letters)

Database: nrp_A
           3,268,448 sequences; 1,061,185,681 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE017343_101(AE017343|pid:none) Cryptococcus neoformans var. neo...    44   0.002
CP001577_79(CP001577|pid:none) Micromonas sp. RCC299 chromosome ...    43   0.005
(O94379) RecName: Full=Probable 60S ribosomal protein L32, mitoc...    42   0.014
DQ214849_1(DQ214849|pid:none) Taeniopygia guttata clone 0058P004...    42   0.014
DQ214848_1(DQ214848|pid:none) Taeniopygia guttata clone 0058P001...    41   0.018
CU466930_246(CU466930|pid:none) Candidatus Cloacamonas acidamino...    41   0.024
BC157296_1(BC157296|pid:none) Xenopus tropicalis mitochondrial r...    40   0.041
BC152712_1(BC152712|pid:none) Xenopus laevis hypothetical protei...    39   0.070
BC122245_1(BC122245|pid:none) Danio rerio zgc:153328, mRNA (cDNA...    39   0.12
(B2A2M3) RecName: Full=50S ribosomal protein L32;  &CP001034_133...    38   0.16
AY084414_1(AY084414|pid:none) Arabidopsis thaliana clone 10780 m...    38   0.20
FM992695_419(FM992695|pid:none) Candida dubliniensis CD36 chromo...    37   0.35
CP001098_1016(CP001098|pid:none) Halothermothrix orenii H 168, c...    37   0.35
BT081540_1(BT081540|pid:none) Rana catesbeiana clone rcat-evr-52...    37   0.35
AB170975_1(AB170975|pid:none) Macaca fascicularis brain cDNA clo...    37   0.45
(B3E2K0) RecName: Full=50S ribosomal protein L32;  &CP001089_191...    36   0.59
CR382129_787(CR382129|pid:none) Yarrowia lipolytica strain CLIB1...    36   0.59
(Q2S6I6) RecName: Full=50S ribosomal protein L32;  &CP000159_37(...    36   0.59
CR954205_111(CR954205|pid:none) Ostreococcus tauri strain OTTH05...    36   0.77
AY800613_1(AY800613|pid:none) Arabidopsis thaliana clone H000000...    36   0.77
CP001357_1634(CP001357|pid:none) Brachyspira hyodysenteriae WA1,...    35   1.0
(Q9DCI9) RecName: Full=39S ribosomal protein L32, mitochondrial;...    35   1.0
AC073556_19(AC073556|pid:none) Oryza sativa chromosome 3 BAC OSJ...    35   1.0
T52357(T52357)related to ribosomal protein YmL32 precursor [impo...    35   1.0
AL442043_6(AL442043|pid:none) Neurospora crassa DNA linkage grou...    35   1.0
AF279255_1(AF279255|pid:none) Mus musculus heart expressed gene ...    35   1.0
BT039955_1(BT039955|pid:none) Zea mays full-length cDNA clone ZM...    35   1.3
(Q9BYC8) RecName: Full=39S ribosomal protein L32, mitochondrial;...    35   1.3
CP000930_2090(CP000930|pid:none) Heliobacterium modesticaldum Ic...    35   1.3
CP000585_119(CP000585|pid:none) Ostreococcus lucimarinus CCE9901...    35   1.3
AF161401_1(AF161401|pid:none) Homo sapiens HSPC283 mRNA, partial...    35   1.3
(Q8RDX9) RecName: Full=50S ribosomal protein L32;  &AE009951_194...    35   1.3
(Q4L5E1) RecName: Full=50S ribosomal protein L32;  &AP006716_182...    35   1.7
(Q18B38) RecName: Full=50S ribosomal protein L32;  &AM180355_121...    35   1.7
(Q5HQ39) RecName: Full=50S ribosomal protein L32;  &(Q8CSZ2) Rec...    35   1.7
(Q74CS3) RecName: Full=50S ribosomal protein L32;  &AE017180_158...    35   1.7
(Q49WQ2) RecName: Full=50S ribosomal protein L32;  &AP008934_166...    35   1.7
(A5IS14) RecName: Full=50S ribosomal protein L32;  &(A6QFY1) Rec...    35   1.7
BX908798_1315(BX908798|pid:none) Parachlamydia-related symbiont ...    34   2.3
(Q6MBL0) RecName: Full=50S ribosomal protein L32;                      34   2.3
CP001656_3448(CP001656|pid:none) Paenibacillus sp. JDR-2, comple...    34   2.3
(Q9ZBQ8) RecName: Full=50S ribosomal protein L32-1;  &AL939124_7...    34   2.9
CR382138_750(CR382138|pid:none) Debaryomyces hansenii strain CBS...    34   2.9
AM295250_749(AM295250|pid:none) Staphylococcus carnosus subsp. c...    34   2.9
(Q2TBI6) RecName: Full=39S ribosomal protein L32, mitochondrial;...    34   2.9
(Q3Z712) RecName: Full=50S ribosomal protein L32;  &CP000027_123...    33   3.8
BT080088_1(BT080088|pid:none) Esox lucius clone eluc-evq-529-104...    33   3.8
(Q47S79) RecName: Full=50S ribosomal protein L32;  &CP000088_648...    33   3.8
(B7IGQ3) RecName: Full=50S ribosomal protein L32;  &CP001185_781...    33   5.0
(B1VYY3) RecName: Full=50S ribosomal protein L32;  &AP009493_190...    33   5.0
AM270157_11(AM270157|pid:none) Aspergillus niger contig An08c002...    33   5.0
AY880433_1(AY880433|pid:none) Gekko japonicus GekBS202P mRNA, co...    33   5.0
FJ546080_1(FJ546080|pid:none) Ovis aries mitochondrial ribosomal...    33   5.0
AY501350_1(AY501350|pid:none) Arabidopsis thaliana hypothetical ...    33   5.0
(Q82JT8) RecName: Full=50S ribosomal protein L32;  &BA000030_267...    33   5.0
CP000853_1423(CP000853|pid:none) Alkaliphilus oremlandii OhILAs,...    33   5.0
(P25348) RecName: Full=54S ribosomal protein L32, mitochondrial;...    33   5.0
(A6LK89) RecName: Full=50S ribosomal protein L32;  &CP000716_458...    33   6.6
(Q9K9R2) RecName: Full=50S ribosomal protein L32;  &BA000004_258...    32   8.6
CR382126_553(CR382126|pid:none) Kluyveromyces lactis strain NRRL...    32   8.6
(P49228) RecName: Full=50S ribosomal protein L32;  &AE000513_231...    32   8.6
(Q54PP6) RecName: Full=Myb-like protein Y;                             32   8.6

>AE017343_101(AE017343|pid:none) Cryptococcus neoformans var.
           neoformans JEC21 chromosome 3, complete sequence.
          Length = 150

 Score = 44.3 bits (103), Expect = 0.002
 Identities = 18/46 (39%), Positives = 29/46 (63%)
 Frame = +1

Query: 349 AVPKKRVSFTRNRKRNXSKKHENXHNITICQKCSTPKLXHNLCXVC 486
           +VPKK+VS +R   R  +K  +N  N+++C  C + KL H++C  C
Sbjct: 81  SVPKKKVSHSRKNMRAANKGLKNKTNLSLCPACGSIKLTHHVCPTC 126

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3268448
Number of Hits to DB: 453,638,578
Number of extensions: 5133725
Number of successful extensions: 22642
Number of sequences better than 10.0: 62
Number of HSP's gapped: 22617
Number of HSP's successfully gapped: 62
Length of query: 184
Length of database: 1,061,185,681
Length adjustment: 121
Effective length of query: 63
Effective length of database: 665,703,473
Effective search space: 41939318799
Effective search space used: 41939318799
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 30 (16.2 bits)
PSORT 

 psg: 0.93  gvh: 0.42  alm: 0.51  top: 0.27  tms: 0.00  mit: 0.36  mip: 0.02
 nuc: 0.09  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 32.0 %: cytoplasmic
	 24.0 %: nuclear
	 12.0 %: extracellular, including cell wall
	 12.0 %: mitochondrial
	  8.0 %: vacuolar
	  4.0 %: cytoskeletal
	  4.0 %: endoplasmic reticulum
	  4.0 %: vesicles of secretory system

>> prediction for Contig-U04529-1 is cyt
VS (DIR, S) 2
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 1
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0