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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U04514-1
Contig ID Contig-U04514-1
Contig update 2001. 8.29
Contig sequence 
>Contig-U04514-1 (Contig-U04514-1Q) /CSM_Contig/Contig-U04514-1Q.Seq.d
ATTTATTTGAAATATTAATAAAAAAAAAAAAAAAAAAAAAAAATGAAGAT
TAATAAGTTTATATTAATATTTTTTATTTCTTTCTTAATAATTAGTTCAT
GTTTTGCTTCACCTATAAAATGGAAAAAAACTAAATTTAAAAGTAATGAA
AAGAGTGAAATATATGTTGATAGTCAAATTAAACAAATGAAATTAATTTT
AAATAGTGATGAATTTAAAAATGGAAATTATAATAATTTTAATTCATCAA
TGGTTAAATTTTCAAATCAAATTCAATTATTTGAAAATGATAAAATATTG
GCATTCTTTTTAGATCAAATTAGAGATTATTTTTCAGAGATTGGATTCGA
TCCAATTACATTGGAAAGTTATATTAAAACACTTTGTAATACATTGTTAA
TTTGTAAAATTCCAATTTTAGGTGATGCAATTAATTTAACCGTTGATACA
GTTGGTATATTATTAGAAGCTCAATGTTATAGAGATAGAATTTTAAATAC
ACCTGTTCTTGGTGGTTTAACAACTTCTTCTCCAACAAAACCGCCACTAT
TGCCTCAAAAACAACATTAAATTTATTACAATTTGATTAATTATATATAT
AGTTC
Gap no gap
Contig length 605
Chromosome number (1..6, M) 2
Chromosome length 8467578
Start point 3899386
End point 3898788
Strand (PLUS/MINUS) MINUS
Number of clones 4
Number of EST 4
Link to clone list U04514
List of clone(s) 

est1=SSF779F,1,574
est2=SSB208F,22,458
est3=SSG729E,37,606
est4=SSI503Z,72,604
Translated Amino Acid sequence 
iylky**KKKKKKKMKINKFILIFFISFLIISSCFASPIKWKKTKFKSNEKSEIYVDSQI
KQMKLILNSDEFKNGNYNNFNSSMVKFSNQIQLFENDKILAFFLDQIRDYFSEIGFDPIT
LESYIKTLCNTLLICKIPILGDAINLTVDTVGILLEAQCYRDRILNTPVLGGLTTSSPTK
PPLLPQKQH*iyynlinyiys
Translated Amino Acid sequence (All Frames) 
Frame A:
iylky**KKKKKKKMKINKFILIFFISFLIISSCFASPIKWKKTKFKSNEKSEIYVDSQI
KQMKLILNSDEFKNGNYNNFNSSMVKFSNQIQLFENDKILAFFLDQIRDYFSEIGFDPIT
LESYIKTLCNTLLICKIPILGDAINLTVDTVGILLEAQCYRDRILNTPVLGGLTTSSPTK
PPLLPQKQH*iyynlinyiys


Frame B:
fi*ninkkkkkkkk*rlisly*yflfls**lvhvllhl*ngkklnlkvmkrvkymlivkl
nk*n*f*ivmnlkmeiiiilihqwlnfqikfnylkmikywhsf*ikleiifqrldsiqlh
wkvilkhfvihc*fvkfqf*vmqli*pliqlvyy*klnvieief*ihlflvv*qlllqqn
rhyclknnikfiti*liiyiv


Frame C:
lfeilikkkkkkkned**vyinifyfflnn*fmfcftykmekn*i*k**ke*nic**sn*
tneinfk***i*kwkl**f*fing*ifksnsii*k**nigilfrsn*rlffrdwirsnyi
gkly*ntl*yivnl*nsnfr*cn*fnr*yswyiirssml*r*nfkytcswwfnnffsnkt
atiaskttlnllqfd*lyi*f
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U04514-1 (Contig-U04514-1Q)
/CSM_Contig/Contig-U04514-1Q.Seq.d
         (605 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U04514-1 (Contig-U04514-1Q) /CSM_Contig/Conti...  1072  0.0
Contig-U13585-1 (Contig-U13585-1Q) /CSM_Contig/Conti...    40  0.003
Contig-U14841-1 (Contig-U14841-1Q) /CSM_Contig/Conti...    38  0.011
Contig-U13931-1 (Contig-U13931-1Q) /CSM_Contig/Conti...    38  0.011
Contig-U12146-1 (Contig-U12146-1Q) /CSM_Contig/Conti...    38  0.011
Contig-U11332-1 (Contig-U11332-1Q) /CSM_Contig/Conti...    38  0.011
Contig-U10367-1 (Contig-U10367-1Q) /CSM_Contig/Conti...    38  0.011
Contig-U05178-1 (Contig-U05178-1Q) /CSM_Contig/Conti...    38  0.011
Contig-U05042-1 (Contig-U05042-1Q) /CSM_Contig/Conti...    38  0.011
Contig-U02182-1 (Contig-U02182-1Q) /CSM_Contig/Conti...    38  0.011

>Contig-U04514-1 (Contig-U04514-1Q) /CSM_Contig/Contig-U04514-1Q.Seq.d
          Length = 605

 Score = 1072 bits (541), Expect = 0.0
 Identities = 555/562 (98%)
 Strand = Plus / Plus

                                                                       
Query: 44  tgaagattaataagtttatattaatattttttatttctttcttaataattagttcatgtt 103
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44  tgaagattaataagtttatattaatattttttatttctttcttaataattagttcatgtt 103

                                                                       
Query: 104 ttgcttcacctataaaatggnnnnnnnctaaatttaaaagtaatgaaaagagtgaaatat 163
           ||||||||||||||||||||       |||||||||||||||||||||||||||||||||
Sbjct: 104 ttgcttcacctataaaatggaaaaaaactaaatttaaaagtaatgaaaagagtgaaatat 163

                                                                       
Query: 164 atgttgatagtcaaattaaacaaatgaaattaattttaaatagtgatgaatttaaaaatg 223
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 164 atgttgatagtcaaattaaacaaatgaaattaattttaaatagtgatgaatttaaaaatg 223

                                                                       
Query: 224 gaaattataataattttaattcatcaatggttaaattttcaaatcaaattcaattatttg 283
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 224 gaaattataataattttaattcatcaatggttaaattttcaaatcaaattcaattatttg 283

                                                                       
Query: 284 aaaatgataaaatattggcattctttttagatcaaattagagattatttttcagagattg 343
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 aaaatgataaaatattggcattctttttagatcaaattagagattatttttcagagattg 343

                                                                       
Query: 344 gattcgatccaattacattggaaagttatattaaaacactttgtaatacattgttaattt 403
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 gattcgatccaattacattggaaagttatattaaaacactttgtaatacattgttaattt 403

                                                                       
Query: 404 gtaaaattccaattttaggtgatgcaattaatttaaccgttgatacagttggtatattat 463
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 gtaaaattccaattttaggtgatgcaattaatttaaccgttgatacagttggtatattat 463

                                                                       
Query: 464 tagaagctcaatgttatagagatagaattttaaatacacctgttcttggtggtttaacaa 523
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 tagaagctcaatgttatagagatagaattttaaatacacctgttcttggtggtttaacaa 523

                                                                       
Query: 524 cttcttctccaacaaaaccgccactattgcctcaaaaacaacattaaatttattacaatt 583
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 cttcttctccaacaaaaccgccactattgcctcaaaaacaacattaaatttattacaatt 583

                                 
Query: 584 tgattaattatatatatagttc 605
           ||||||||||||||||||||||
Sbjct: 584 tgattaattatatatatagttc 605


 Score = 38.2 bits (19), Expect = 0.011
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                             
Query: 1  atttatttgaaatattaat 19
          |||||||||||||||||||
Sbjct: 1  atttatttgaaatattaat 19


>Contig-U13585-1 (Contig-U13585-1Q) /CSM_Contig/Contig-U13585-1Q.Seq.d
          Length = 769

 Score = 40.1 bits (20), Expect = 0.003
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 268 caaattcaattatttgaaaa 287
           ||||||||||||||||||||
Sbjct: 479 caaattcaattatttgaaaa 498


>Contig-U14841-1 (Contig-U14841-1Q) /CSM_Contig/Contig-U14841-1Q.Seq.d
          Length = 132

 Score = 38.2 bits (19), Expect = 0.011
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 225 aaattataataattttaat 243
           |||||||||||||||||||
Sbjct: 60  aaattataataattttaat 78


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 18,662
Number of Sequences: 6905
Number of extensions: 18662
Number of successful extensions: 2514
Number of sequences better than 10.0: 302
length of query: 605
length of database: 5,674,871
effective HSP length: 16
effective length of query: 589
effective length of database: 5,564,391
effective search space: 3277426299
effective search space used: 3277426299
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2009. 6.21
Homology vs DNA 
Query= Contig-U04514-1 (Contig-U04514-1Q) /CSM_Contig/Contig-U04514-1Q.Seq.d
         (605 letters)

Database: ddbj_A
           102,105,510 sequences; 101,790,757,118 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AC116986) Dictyostelium discoideum chromosome 2 map 2234041...   617   0.0    4
(C90255) Dictyostelium discoideum slug cDNA, clone SSI503.        617   0.0    3
(C84835) Dictyostelium discoideum slug cDNA, clone SSG729.        628   0.0    3
(AU073044) Dictyostelium discoideum slug cDNA, clone SSF779.      159   3e-61  3
(AU073343) Dictyostelium discoideum slug cDNA, clone SSG729.      159   2e-55  2
(AU071307) Dictyostelium discoideum slug cDNA, clone SSB208.      159   2e-55  2
(AC216452) Populus trichocarpa clone POP018-D02, complete se...    52   0.025  1
(AC116305) Dictyostelium discoideum chromosome 2 map 1005175...    40   0.056  10
(AC204231) Zea mays chromosome 4 clone CH201-237F22; ZMMBBc0...    34   0.061  2
(AC214432) Zea mays chromosome 4 clone CH201-69I21; ZMMBBc00...    34   0.061  2
(AC023138) Homo sapiens chromosome 8 clone RP11-523D2, WORKI...    36   0.062  6
(L06178) Apis mellifera ligustica complete mitochondrial gen...    36   0.066  5
(CJ456984) Macaca fascicularis mRNA, clone: QflA-22843, 5' e...    36   0.078  2
(EJ873781) 1093018358675 Global-Ocean-Sampling_GS-30-02-01-1...    34   0.091  3
(EJ868311) 1093018295312 Global-Ocean-Sampling_GS-30-02-01-1...    34   0.094  3
(ER342858) 1092344357955 Global-Ocean-Sampling_GS-34-01-01-1...    34   0.098  3
(AP009888) Lotus japonicus genomic DNA, clone: LjT35F15, TM1...    46   0.15   3
(AC189432) Brassica rapa subsp. pekinensis clone KBrB068E07,...    42   0.27   5
(BZ391325) EINAS80TF EI_10_12_KB Entamoeba invadens genomic ...    34   0.28   3
(DX921035) rGB-SNP_Gr_Grai-LR-101b-B06 rGB-SNP_Gr Gossypium ...    48   0.39   1
(EL927972) NY4Tr1_19_G06.b1_A039 NY4 trophonts (NY4Tr1) Icht...    48   0.39   1
(CV924277) PJ018F12 sporangia, purified Phytophthora infesta...    48   0.39   1
(AM285320) Spiroplasma citri GII3-3X chromosome, contig Cont...    36   0.41   5
(AP009696) Lotus japonicus genomic DNA, chromosome 1, clone:...    42   0.45   4
(EU746611) Nasonia giraulti strain RV2 NADH dehydrogenase su...    40   0.48   3
(AE014822) Plasmodium falciparum 3D7 chromosome 14 section 7...    32   0.48   7
(AP010088) Lotus japonicus genomic DNA, clone: LjT16I12, TM0...    42   0.48   4
(BH301945) CH230-58E4.TVB CHORI-230 Segment 1 Rattus norvegi...    36   0.54   2
(EA684772) Sequence 63651 from patent US 7365185.                  34   0.56   3
(AC004688) Plasmodium falciparum chromosome 12 clone PFYAC69...    32   0.58   8
(CU929000) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    42   0.59   2
(AC141857) Sus scrofa clone RP44-473N18, WORKING DRAFT SEQUE...    42   0.60   2
(EA699230) Sequence 78109 from patent US 7365185.                  34   0.61   3
(AC175990) Strongylocentrotus purpuratus clone R3-17I8, WORK...    46   0.62   4
(CR792414) Zebrafish DNA sequence from clone CH211-95O10 in ...    38   0.63   5
(BX571857) Staphylococcus aureus strain MSSA476, complete ge...    32   0.78   19
(BA000033) Staphylococcus aureus subsp. aureus MW2 DNA, comp...    32   0.85   19
(AC141714) Apis mellifera clone CH224-57G22, *** SEQUENCING ...    36   0.93   6
(AL929359) Plasmodium falciparum strain 3D7, chromosome 9; s...    40   0.96   9
(AM445472) Vitis vinifera contig VV78X038222.9, whole genome...    34   1.1    5
(AC136832) Rattus norvegicus clone CH230-192A20, WORKING DRA...    36   1.3    5
(AP009180) Candidatus Carsonella ruddii PV DNA, complete gen...    36   1.5    6
(DH209263) Oryzias latipes Fosmid clone:GOLWFno532_b01, forw...    38   1.5    2
(CR456641) Zebrafish DNA sequence from clone DKEY-69N13 in l...    46   1.5    1
(CR293504) Zebrafish DNA sequence from clone CH211-147G3 in ...    46   1.5    1
(BX649554) Zebrafish DNA sequence from clone DKEYP-71F10 in ...    46   1.5    1
(BX004764) Zebrafish DNA sequence from clone DKEY-162L4 in l...    46   1.5    1
(AC210636) Macaca mulatta  BAC CH250-186F20 (Children's Hosp...    46   1.5    1
(AC210499) Macaca mulatta  BAC CH250-194O22 (Children's Hosp...    46   1.5    1
(AP009637) Lotus japonicus genomic DNA, chromosome 2, clone:...    46   1.5    1
(AP006537) Lotus japonicus genomic DNA, chromosome 2, clone:...    46   1.5    1
(AP006536) Lotus japonicus genomic DNA, chromosome 2, clone:...    46   1.5    1
(AM460354) Vitis vinifera contig VV78X139905.9, whole genome...    46   1.5    1
(AM434684) Vitis vinifera contig VV78X060112.2, whole genome...    46   1.5    1
(AM433536) Vitis vinifera contig VV78X236432.1, whole genome...    46   1.5    1
(AC152406) Medicago truncatula chromosome 8 clone mth2-71o20...    46   1.5    1
(AC135311) Medicago truncatula clone mth2-27l9, complete seq...    46   1.5    1
(AF405554) Cryptosporidium parvum hypothetical protein gene,...    46   1.5    1
(CU469272) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    46   1.5    1
(CU468399) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    46   1.5    1
(CR936397) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    46   1.5    1
(AP008137) Lotus japonicus genomic DNA, clone: LjB11F20, BM1...    46   1.5    1
(AP007889) Lotus japonicus genomic DNA, chromosome 1, clone:...    46   1.5    1
(AP007680) Lotus japonicus genomic DNA, chromosome 4, clone:...    46   1.5    1
(AP007611) Lotus japonicus genomic DNA, chromosome 1, clone:...    46   1.5    1
(AC201212) Strongylocentrotus purpuratus clone R3-15D9, WORK...    46   1.5    1
(AC178455) Strongylocentrotus purpuratus clone R3-3039K08, W...    46   1.5    1
(BH429437) BOGOO93TF BOGO Brassica oleracea genomic clone BO...    46   1.5    1
(BH138520) ENTNI76TR Entamoeba histolytica Sheared DNA Entam...    46   1.5    1
(AZ685494) ENTIX82TF Entamoeba histolytica Sheared DNA Entam...    46   1.5    1
(AM607495) Entamoeba invadens IP1 GSS, clone inv079g03.q1k.        46   1.5    1
(DX549898) GH_MBb0042J09f GH_MBb Gossypium hirsutum genomic ...    46   1.5    1
(AJ562198) Cryptosporidium parvum GSS, PAC clone pica_0007_d...    46   1.5    1
(CT270451) Sus scrofa genomic clone CH242-252H3, genomic sur...    46   1.5    1
(BZ436804) BONLE51TF BO_1.6_2_KB_tot Brassica oleracea genom...    46   1.5    1
(BH688305) BOHZX36TR BO_2_3_KB Brassica oleracea genomic clo...    46   1.5    1
(EE131653) SiJWE02ACV Lausanne fire ant library Solenopsis i...    46   1.5    1
(CP000939) Clostridium botulinum B1 str. Okra, complete genome.    46   1.5    1
(CP000728) Clostridium botulinum F str. Langeland, complete ...    46   1.5    1
(CP000684) Rickettsia massiliae MTU5 plasmid pRMA, complete ...    46   1.5    1
(DQ832718) Phytophthora ramorum mitochondrion, complete genome.    34   1.7    6
(AY513372) Stictodepsa sp. CPL-2004 cytochrome oxidase subun...    40   1.7    2
(DV776281) Hw_Fat_48_050806_C03 Bos taurus CF-24-HW fat cDNA...    44   1.7    2
(EU427470) Phytophthora ramorum strain CBS 101553 mitochondr...    34   1.7    6
(AM460448) Vitis vinifera contig VV78X193118.36, whole genom...    34   1.7    5
(AC180763) Strongylocentrotus purpuratus clone R3-3080G22, W...    36   1.9    4
(AC149494) Medicago truncatula clone mth2-116m7, complete se...    32   2.0    5
(DX541023) GH_MBb0042E14f GH_MBb Gossypium hirsutum genomic ...    34   2.0    3
(EH014105) USDA-FP_186838 Lysiphlebus testaceipes adult whol...    40   2.0    2
(DQ870926) Bombus ignitus mitochondrion, complete genome.          34   2.2    4
(AC175989) Strongylocentrotus purpuratus clone R3-17I22, WOR...    36   2.2    6
(AM426673) Vitis vinifera contig VV78X232609.17, whole genom...    44   2.2    2
(CS604443) Sequence 3429 from Patent WO2007039234.                 42   2.3    2
(CS602795) Sequence 1781 from Patent WO2007039234.                 42   2.3    2
(CS604967) Sequence 3953 from Patent WO2007039234.                 42   2.3    2
(CS603319) Sequence 2305 from Patent WO2007039234.                 42   2.3    2
(AP009695) Lotus japonicus genomic DNA, clone: LjT08P02, TM1...    42   2.4    3
(BX293980) Mycoplasma mycoides subsp. mycoides SC str. PG1, ...    38   2.5    14
(AE014848) Plasmodium falciparum 3D7 chromosome 12, section ...    36   2.7    6
(AC234740) Brassica rapa subsp. pekinensis chromosome Linkag...    34   2.8    6
(FH468441) CHO_OF4963xa21r1.ab1 CHO_OF4 Nicotiana tabacum ge...    32   2.8    3
(AL929357) Plasmodium falciparum strain 3D7, chromosome 9; s...    34   2.9    9
(AM463121) Vitis vinifera contig VV78X245121.18, whole genom...    38   3.1    3
(FH509085) CHO_OF4703xn04f1.ab1 CHO_OF4 Nicotiana tabacum ge...    36   3.1    2
(AX344555) Sequence 6 from Patent WO0200932.                       34   3.2    10
(ED109391) AUAC-aag56b07.b1 Ascaris suum whole genome shotgu...    36   3.2    2
(EJ776339) 1093004100333 Global-Ocean-Sampling_GS-30-02-01-1...    40   3.3    2
(EJ739652) 1092962008781 Global-Ocean-Sampling_GS-30-02-01-1...    40   3.5    2
(AM438717) Vitis vinifera contig VV78X033077.8, whole genome...    42   3.6    3
(DJ386602) Diagnosis of Diseases Associated with Metastasis.       32   3.6    5
(BD452617) Diagnosis of Diseases Associated with tumor suppr...    32   3.6    5
(AX348636) Sequence 94 from Patent WO0202807.                      32   3.6    5
(AX345603) Sequence 674 from Patent WO0200928.                     32   3.6    5
(AX281398) Sequence 62 from Patent WO0177376.                      32   3.6    5
(AX251096) Sequence 64 from Patent WO0168912.                      32   3.6    5
(AC162030) Medicago truncatula clone mth2-178b21, complete s...    36   3.8    6
(AX344506) Sequence 353 from Patent WO0200926.                     30   4.1    7
(DX921655) rGB-SNP_Gt_Grai-LR-101b-B06 rGB-SNP_Gt Gossypium ...    34   4.3    2
(BX537274) Zebrafish DNA sequence from clone DKEY-103L3 in l...    44   4.3    4
(AJ925952) Theileria annulata EST, clone tam009g01_q1k.            36   4.4    2
(AC107295) Homo sapiens 3 BAC RP11-1E5 (Roswell Park Cancer ...    40   4.8    4
(AF466146) Melipona bicolor mitochondrial genome, partial se...    32   4.8    5
(AC097449) Homo sapiens BAC clone CTD-2140E23 from 2, comple...    44   4.9    2
(AC114783) Homo sapiens BAC clone RP11-600N14 from 2, comple...    44   4.9    2
(AL844509) Plasmodium falciparum chromosome 13.                    34   5.1    9
(AP006423) Lotus japonicus genomic DNA, chromosome 5, clone:...    44   5.3    3
(GC700596) Sequence 15841 from patent US 6812339.                  38   5.6    3
(CU928040) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    44   5.7    2
(FD390721) 1106162214829 Cryptosporidium muris (strain RN66)...    34   5.9    3
(BI513724) BB160013B10G01.5 Bee Brain Normalized Library, BB...    40   6.1    2
(CR394569) Zebrafish DNA sequence from clone CH211-212K20 in...    44   6.1    1
(BX571708) Zebrafish DNA sequence from clone DKEYP-74B2.           44   6.1    1
(BX088573) Mouse DNA sequence from clone RP23-78N10 on chrom...    44   6.1    1
(AC153582) Mus musculus 6 BAC RP23-432M19 (Roswell Park Canc...    44   6.1    1
(AC116839) Mus musculus chromosome 8, clone RP24-390L13, com...    44   6.1    1
(AC098888) Mus musculus BAC clone RP23-122N8 from 8, complet...    44   6.1    1
(BX000510) Oryza sativa chromosome 12, . BAC OJ1769_D07 of l...    44   6.1    1
(AP010582) Lotus japonicus genomic DNA, chromosome 1, clone:...    44   6.1    1
(AP010572) Lotus japonicus genomic DNA, clone: LjT38M11, TM1...    44   6.1    1
(AP010571) Lotus japonicus genomic DNA, clone: LjT17J13, TM1...    44   6.1    1
(AP010552) Lotus japonicus genomic DNA, chromosome 5, clone:...    44   6.1    1
(AP009652) Lotus japonicus genomic DNA, chromosome 1, clone:...    44   6.1    1
(AP009633) Lotus japonicus genomic DNA, chromosome 1, clone:...    44   6.1    1
(AP008950) Lotus japonicus genomic DNA, chromosome 2, clone:...    44   6.1    1
(AP008218) Oryza sativa (japonica cultivar-group) genomic DN...    44   6.1    1
(AP006139) Lotus japonicus genomic DNA, chromosome 3, clone:...    44   6.1    1
(AP006111) Lotus japonicus genomic DNA, chromosome 3, clone:...    44   6.1    1
(AP005601) Lotus japonicus genomic DNA, chromosome 2, clone:...    44   6.1    1
(AP004959) Lotus japonicus genomic DNA, chromosome 3, clone:...    44   6.1    1
(AP004942) Lotus japonicus genomic DNA, chromosome 1, clone:...    44   6.1    1
(AP004923) Lotus japonicus genomic DNA, chromosome 1, clone:...    44   6.1    1
(AP004895) Lotus japonicus genomic DNA, chromosome 1, clone:...    44   6.1    1
(AM467168) Vitis vinifera contig VV78X112775.3, whole genome...    44   6.1    1
(AM465961) Vitis vinifera, whole genome shotgun sequence, co...    44   6.1    1
(AM445376) Vitis vinifera contig VV78X000791.14, whole genom...    44   6.1    1
(AL391712) Arabidopsis thaliana DNA chromosome 5, BAC clone ...    44   6.1    1
(AL353994) Arabidopsis thaliana DNA chromosome 5, BAC clone ...    44   6.1    1
(EA684055) Sequence 62934 from patent US 7365185.                  44   6.1    1
(EA647056) Sequence 25935 from patent US 7365185.                  44   6.1    1
(AY219179) Dictyostelium discoideum putative G protein-coupl...    44   6.1    1
(AC116984) Dictyostelium discoideum chromosome 2 map 2567470...    44   6.1    1
(AC160870) Otolemur garnettii clone CH256-419I5, WORKING DRA...    44   6.1    1
(AC135722) Homo sapiens clone CTD-2646J10, LOW-PASS SEQUENCE...    44   6.1    1
(AC130120) Rattus norvegicus clone CH230-156H24, *** SEQUENC...    44   6.1    1
(AC127239) Mus musculus chromosome 8 clone RP24-381A23, WORK...    44   6.1    1
(AC126623) Rattus norvegicus clone CH230-269I18, WORKING DRA...    44   6.1    1
(CU606896) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   6.1    1
(AP010365) Lotus japonicus genomic DNA, chromosome 3, clone:...    44   6.1    1
(AP010158) Lotus japonicus genomic DNA, chromosome 1, clone:...    44   6.1    1
(AP010068) Lotus japonicus genomic DNA, clone: LjT10P12, TM0...    44   6.1    1
(AP010025) Lotus japonicus genomic DNA, chromosome 3, clone:...    44   6.1    1
(AP007871) Lotus japonicus genomic DNA, chromosome 3, clone:...    44   6.1    1
(AP007801) Lotus japonicus genomic DNA, chromosome 4, clone:...    44   6.1    1
(AP007692) Lotus japonicus genomic DNA, chromosome 1, clone:...    44   6.1    1
(AC230591) Bos taurus clone CH240-504E10, WORKING DRAFT SEQU...    44   6.1    1
(AC230523) Bos taurus clone CH240-505P16, WORKING DRAFT SEQU...    44   6.1    1
(AC224526) Bos taurus clone CH240-482J24, WORKING DRAFT SEQU...    44   6.1    1
(AC217943) Zea mays chromosome 6 clone ZMMBBb-11O17; ZMMBBb0...    44   6.1    1
(AC203402) Zea mays chromosome 6 clone CH201-69J18; ZMMBBc00...    44   6.1    1
(AC194386) Zea mays chromosome 1 clone ZMMBBb-598N14; ZMMBBb...    44   6.1    1
(AC188338) Aotus nancymaae clone CH258-275N8, WORKING DRAFT ...    44   6.1    1
(AC187952) Callicebus moloch clone LB5-246D12, WORKING DRAFT...    44   6.1    1
(AC185501) Zea mays chromosome 4 clone CH201-323J10; ZMMBBc0...    44   6.1    1
(AC182255) Gallus gallus chromosome W clone CH261-149N6, WOR...    44   6.1    1
(AC177283) Strongylocentrotus purpuratus clone R3-1033G9, WO...    44   6.1    1
(AC175832) Gallus gallus chromosome W clone CH261-75N4, WORK...    44   6.1    1
(AC173325) Bos taurus clone CH240-16C6, WORKING DRAFT SEQUEN...    44   6.1    1
(AC172684) Bos taurus clone CH240-246D16, WORKING DRAFT SEQU...    44   6.1    1
(AC172529) Bos taurus clone CH240-254N6, WORKING DRAFT SEQUE...    44   6.1    1
(AC171278) Bos taurus clone CH240-70K8, WORKING DRAFT SEQUEN...    44   6.1    1
(AK286782) Glycine max cDNA, clone: GMFL01-36-J16.                 44   6.1    1
(AZ685365) ENTKH15TF Entamoeba histolytica Sheared DNA Entam...    44   6.1    1
(AZ548943) ENTDE80TR Entamoeba histolytica Sheared DNA Entam...    44   6.1    1
(AZ540560) ENTDD05TF Entamoeba histolytica Sheared DNA Entam...    44   6.1    1
(FI038621) CHO_OF6461xa04f1.ab1 CHO_OF6 Nicotiana tabacum ge...    44   6.1    1
(FI031397) CHO_OF6945xl07r1.ab1 CHO_OF6 Nicotiana tabacum ge...    44   6.1    1
(FI031318) CHO_OF6945xl07f1.ab1 CHO_OF6 Nicotiana tabacum ge...    44   6.1    1
(ER760204) SB_BBc233-A02.F SB_BBc Sorghum bicolor genomic 5'...    44   6.1    1
(EK378345) 1095469449354 Global-Ocean-Sampling_GS-31-01-01-1...    44   6.1    1
(EK149373) 1095456041434 Global-Ocean-Sampling_GS-31-01-01-1...    44   6.1    1
(EK040768) 1092959516204 Global-Ocean-Sampling_GS-31-01-01-1...    44   6.1    1
(EK022487) 1092955341503 Global-Ocean-Sampling_GS-31-01-01-1...    44   6.1    1
(AM654606) Entamoeba moshkovskii FIC GSS, clone mosh015f11.q1k.    44   6.1    1
(AM640367) Entamoeba dispar GSS, clone dispar73h01.p1k.            44   6.1    1
(EJ553496) 1092959475662 Global-Ocean-Sampling_GS-29-01-01-1...    44   6.1    1
(EJ333452) 1092963457571 Global-Ocean-Sampling_GS-28-01-01-1...    44   6.1    1
(EJ271497) 1095353018226 Global-Ocean-Sampling_GS-27-01-01-1...    44   6.1    1
(EJ261876) 1095349046384 Global-Ocean-Sampling_GS-27-01-01-1...    44   6.1    1
(EJ121839) 1092343376557 Global-Ocean-Sampling_GS-27-01-01-1...    44   6.1    1
(EJ109834) 1092343150633 Global-Ocean-Sampling_GS-27-01-01-1...    44   6.1    1
(EI347807) GM_WBc0094G02.f GM_WBc Glycine max genomic clone ...    44   6.1    1
(DX559638) GH_MBb0043F09f GH_MBb Gossypium hirsutum genomic ...    44   6.1    1
(DU023230) 3080 Tomato HindIII BAC Library Solanum lycopersi...    44   6.1    1
(DU023229) 3078 Tomato HindIII BAC Library Solanum lycopersi...    44   6.1    1
(CW418119) fsbb001f121h04k0 Sorghum methylation filtered lib...    44   6.1    1
(CW418118) fsbb001f121h04f0 Sorghum methylation filtered lib...    44   6.1    1
(CW303445) 104_788_11465242_148_35696_047 Sorghum methylatio...    44   6.1    1
(CW303444) 104_788_11465242_116_35692_047 Sorghum methylatio...    44   6.1    1
(CW241493) 104_700_11218801_116_37547_003 Sorghum methylatio...    44   6.1    1
(CL064916) CH216-103G18_RM1.1 CH216 Xenopus (Silurana) tropi...    44   6.1    1
(CG815117) SOYEA34TV LargeInsertSoybeanGenLib Glycine max ge...    44   6.1    1
(CG306484) OG1AC86TV ZM_0.7_1.5_KB Zea mays genomic clone ZM...    44   6.1    1
(CG273944) OG1CE56TH ZM_0.7_1.5_KB Zea mays genomic clone ZM...    44   6.1    1
(CG038086) PUFRS90TD ZM_0.6_1.0_KB Zea mays genomic clone ZM...    44   6.1    1
(CC445191) PUHGL60TD ZM_0.6_1.0_KB Zea mays genomic clone ZM...    44   6.1    1
(CC291700) CH261-160N10_RM1.1 CH261 Gallus gallus genomic cl...    44   6.1    1
(BZ087410) lkf50d10.b1 B.oleracea002 Brassica oleracea genom...    44   6.1    1
(BZ073849) lkf17h05.b1 B.oleracea002 Brassica oleracea genom...    44   6.1    1
(BX224579) Danio rerio genomic clone DKEY-254J21, genomic su...    44   6.1    1
(BH708254) BOMDG25TF BO_2_3_KB Brassica oleracea genomic clo...    44   6.1    1
(EL523325) EST_omor_eva_2478 omoreva mixed_tissue Osmerus mo...    44   6.1    1
(EH260856) JGI_ACBU4281.fwd ACBU Phakopsora pachyrhizi infec...    44   6.1    1
(EH257665) JGI_ACBU1748.fwd ACBU Phakopsora pachyrhizi infec...    44   6.1    1
(EH222219) JGI_ABWZ2931.fwd ABWZ Phakopsora pachyrhizi infec...    44   6.1    1
(EE373369) LB03038.CR_B20 GC_BGC-30 Bos taurus cDNA clone IM...    44   6.1    1
(EE078713) S2B21089 Buds (VvS2) Vitis vinifera cDNA clone S2...    44   6.1    1
(EE074314) C4B05603 Berries veraison stage (VvC4) Vitis vini...    44   6.1    1
(EC981965) WIN1114.C21_G20 Muscat Hamburg pre-veraison berry...    44   6.1    1
(EC973252) WIN1015.C21_M21 Muscat Hamburg post-veraison peri...    44   6.1    1
(EC972343) WIN1012.C21_M19 Muscat Hamburg post-veraison peri...    44   6.1    1
(EC970870) WIN102.C21_P12 Muscat Hamburg post-veraison peric...    44   6.1    1
(EC970220) WIN094.C21_O13 Cab Sauv pericarp normalized (WIN0...    44   6.1    1
(EC967588) WIN0825.C21_F08 Cab Sauv seed normalized (WIN08) ...    44   6.1    1
(EC965854) WIN0819.C21_E22 Cab Sauv seed normalized (WIN08) ...    44   6.1    1
(EC963090) WIN0816.C21_F02 Cab Sauv seed normalized (WIN08) ...    44   6.1    1
(EC954484) WIN0561.C21_N20 Cab Sauv flower, leaf and root no...    44   6.1    1
(EC945703) WIN0535.C21_I23 Cab Sauv flower, leaf and root no...    44   6.1    1
(DY052939) 000905BEMN012167HT BEMN Bos taurus cDNA 5', mRNA ...    44   6.1    1
(DW163724) CLVY2241.b1_B10.ab1 CLV(XYZ) lettuce virosa Lactu...    44   6.1    1
(DT018598) VVI026D03_587036 CabSau Flower Stage 12 (FLOu0012...    44   6.1    1
(DR390345) USDA-FP_150196 Adult Alate Aphis gossypii (WHAGA)...    44   6.1    1
(DB972525) Glycine max cDNA, clone: GMFL02-48-P03, 5'end.          44   6.1    1
(CX949639) UMC-bcl_0B01-024-c07 Day 8 Corpus luteum bcl Bos ...    44   6.1    1
(AM015671) Bos taurus 5' EST, clone C0007414b06.                   44   6.1    1
(AM014605) Bos taurus 3' EST, clone C0007414b06.                   44   6.1    1
(CO377019) tah47f12.x1 Hydra EST -Kiel 5 Hydra magnipapillat...    44   6.1    1
(CF405950) CSECS061F11_VERu0035 CabSau Berry Veraison Stage ...    44   6.1    1
(CF355617) V-B-130C02 VAN-Baker-1 Vitis aestivalis cDNA clon...    44   6.1    1
(CD416474) Gm_ck6844 Soybean induced by Salicylic Acid Glyci...    44   6.1    1
(CD414681) Gm_ck46877 Soybean induced by Salicylic Acid Glyc...    44   6.1    1
(CD411950) Gm_ck42945 Soybean induced by Salicylic Acid Glyc...    44   6.1    1
(CD408570) Gm_ck34871 Soybean induced by Salicylic Acid Glyc...    44   6.1    1
(CD407502) Gm_ck32871 Soybean induced by Salicylic Acid Glyc...    44   6.1    1
(CD405632) Gm_ck29355 Soybean induced by Salicylic Acid Glyc...    44   6.1    1
(CD404445) Gm_ck27279 Soybean induced by Salicylic Acid Glyc...    44   6.1    1
(CD394418) Gm_ck14124 Soybean induced by Salicylic Acid Glyc...    44   6.1    1
(CD392993) Gm_ck12289 Soybean induced by Salicylic Acid Glyc...    44   6.1    1
(CD391824) Gm_ck10788 Soybean induced by Salicylic Acid Glyc...    44   6.1    1
(CD391362) Gm_ck10239 Soybean induced by Salicylic Acid Glyc...    44   6.1    1
(CB289391) V-B-116E01 VAN-Baker-1 Vitis aestivalis cDNA clon...    44   6.1    1
(CB288640) V-B-17D01 VAN-Baker-1 Vitis aestivalis cDNA clone...    44   6.1    1
(CB036083) VVA024D12_120188 An expressed sequence tag databa...    44   6.1    1
(CA936166) sav11d08.y1 Gm-c1048 Glycine max cDNA clone SOYBE...    44   6.1    1
(CA801115) sau01b06.y2 Gm-c1062 Glycine max cDNA clone SOYBE...    44   6.1    1
(BW673731) Glycine max cDNA clone: GMFL01-36-J16, 5'end.           44   6.1    1
(BU925892) sas83d06.y1 Gm-c1036 Glycine max cDNA clone SOYBE...    44   6.1    1
(BQ786639) saq71b04.y1 Gm-c1076 Glycine max cDNA clone SOYBE...    44   6.1    1
(BQ413843) GA__Ed0079D11r Gossypium arboreum 7-10 dpa fiber ...    44   6.1    1
(BQ405165) GA__Ed0079D11f Gossypium arboreum 7-10 dpa fiber ...    44   6.1    1
(BQ297225) sao31g11.y1 Gm-c1054 Glycine max cDNA clone SOYBE...    44   6.1    1
(BM893273) sam54a08.y1 Gm-c1069 Glycine max cDNA clone SOYBE...    44   6.1    1
(BM396608) 5009-0-23-C01.t.1 Chilcoat/Turkewitz cDNA (large ...    44   6.1    1
(BM270312) sak11b09.y1 Gm-c1075 Glycine max cDNA clone SOYBE...    44   6.1    1
(BM177685) saj64c09.y1 Gm-c1072 Glycine max cDNA clone SOYBE...    44   6.1    1
(BI681502) 460914 MARC 1BOV Bos taurus cDNA 5', mRNA sequence.     44   6.1    1
(BI534725) 397857 MARC 4BOV Bos taurus cDNA 5', mRNA sequence.     44   6.1    1
(BI423875) saf29b04.y3 Gm-c1076 Glycine max cDNA clone GENOM...    44   6.1    1
(BG653513) sad58c09.y1 Gm-c1075 Glycine max cDNA clone GENOM...    44   6.1    1
(BG508725) sac85f04.y1 Gm-c1072 Glycine max cDNA clone GENOM...    44   6.1    1
(BE191555) sn78a02.y1 Gm-c1038 Glycine max cDNA clone GENOME...    44   6.1    1
(GD827052) 454GmaGlobSeed569701 Soybean Seeds Containing Glo...    44   6.1    1
(FG612189) stem_S081_H11.SEQ Opium poppy stem cDNA library P...    44   6.1    1
(FE222116) O029H05 Antarctic fish Dissostichus mawsoni adult...    44   6.1    1
(FE154655) LV_LO_RA015D01f Litopenaeus vannamei lymphoid org...    44   6.1    1
(FE154447) LV_LO_RA014J14f Litopenaeus vannamei lymphoid org...    44   6.1    1
(FE153622) LV_LO_RA013D17f Litopenaeus vannamei lymphoid org...    44   6.1    1
(AW598565) sj93b09.y1 Gm-c1023 Glycine max cDNA clone GENOME...    44   6.1    1
(AW596355) sj02d02.y1 Gm-c1032 Glycine max cDNA clone GENOME...    44   6.1    1
(EV844372) TT1EY14TV Tetrahymena thermophila SB210 cDNA libr...    44   6.1    1
(EV732566) LB03411.C21_D17 GC_BGC-34 Bos taurus cDNA clone I...    44   6.1    1
(EV663643) LB03411.CR_D17 GC_BGC-34 Bos taurus cDNA clone IM...    44   6.1    1
(AW318129) sg60g08.y1 Gm-c1007 Glycine max cDNA clone GENOME...    44   6.1    1
(AM398681) Flavobacterium psychrophilum JIP02/86 complete ge...    44   6.1    1
(AC116979) Dictyostelium discoideum chromosome 2 map 6445720...    32   6.2    10
(CP000255) Staphylococcus aureus subsp. aureus USA300_FPR375...    32   6.3    19
(CP000730) Staphylococcus aureus subsp. aureus USA300_TCH151...    32   6.3    19
(AC180255) Strongylocentrotus purpuratus clone R3-32I21, WOR...    40   6.3    4
(AP007493) Lotus japonicus genomic DNA, chromosome 4, clone:...    42   6.5    4
(DE552302) Bombyx mori genomic DNA, Fosmid clone:GBMFno188_l...    40   6.6    2
(AC083896) Homo sapiens chromosome RPCI-6 clone RP6-194K9, W...    42   6.7    2
(AC134838) Mus musculus BAC clone RP24-350C10 from 8, comple...    34   6.7    6
(CU914268) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    40   6.7    4
(CP001184) Ureaplasma urealyticum serovar 10 str. ATCC 33699...    36   6.7    10
(BA000021) Wigglesworthia glossinidia endosymbiont of Glossi...    32   6.8    12
(CR382401) Plasmodium falciparum chromosome 6, complete sequ...    32   6.8    8
(AC232482) Brassica rapa subsp. pekinensis clone KBrB038O14,...    38   6.8    5
(DB745356) Apis mellifera head cDNA, RIKEN full-length enric...    40   7.0    2
(AY528719) Homo sapiens estrogen-related receptor gamma (ESR...    36   7.0    7
(AX345574) Sequence 645 from Patent WO0200928.                     30   7.0    5
(AC183344) Oryctolagus cuniculus clone LB1-49D13, WORKING DR...    42   7.2    2
(AC148706) Macaca mulatta Major Histocompatibility Complex B...    34   7.3    6
(CP001056) Clostridium botulinum B str. Eklund 17B, complete...    32   7.4    17
(BX901908) Zebrafish DNA sequence from clone DKEY-268B12 in ...    38   7.6    5
(CU571199) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    38   7.6    2
(DE567863) Bombyx mori genomic DNA, Fosmid clone:GBMFno211_m...    40   7.8    2
(AC189237) Brassica rapa subsp. pekinensis clone KBrB014O06,...    36   7.9    3
(AC102391) Mus musculus chromosome 18, clone RP24-62K22, com...    34   8.2    4
(AC022544) Homo sapiens clone RP11-45O22, WORKING DRAFT SEQU...    36   8.3    4
(BX548063) Zebrafish DNA sequence from clone CH211-198J3 in ...    42   8.6    4
(CR405708) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    34   9.0    6
(Z99707) Arabidopsis thaliana DNA chromosome 4, ESSA I AP2 c...    38   9.1    4
(CP000123) Mycoplasma capricolum subsp. capricolum ATCC 2734...    34   9.2    14
(CE352268) tigr-gss-dog-17000361417185 Dog Library Canis lup...    40   9.3    2
(CU179705) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    42   9.3    4
(AL929082) Zebrafish DNA sequence from clone CH211-113P18.         34   9.5    6
(CW234263) 104_687_11213887_148_37382_018 Sorghum methylatio...    36   9.7    2

>(AC116986) Dictyostelium discoideum chromosome 2 map 2234041-2567370
              strain AX4, complete sequence.
          Length = 333321

 Score =  617 bits (311), Expect(4) = 0.0
 Identities = 311/311 (100%)
 Strand = Plus / Plus


Query: 289    gataaaatattggcattctttttagatcaaattagagattatttttcagagattggattc 348
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185393 gataaaatattggcattctttttagatcaaattagagattatttttcagagattggattc 185452


Query: 349    gatccaattacattggaaagttatattaaaacactttgtaatacattgttaatttgtaaa 408
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185453 gatccaattacattggaaagttatattaaaacactttgtaatacattgttaatttgtaaa 185512


Query: 409    attccaattttaggtgatgcaattaatttaaccgttgatacagttggtatattattagaa 468
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185513 attccaattttaggtgatgcaattaatttaaccgttgatacagttggtatattattagaa 185572


Query: 469    gctcaatgttatagagatagaattttaaatacacctgttcttggtggtttaacaacttct 528
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185573 gctcaatgttatagagatagaattttaaatacacctgttcttggtggtttaacaacttct 185632


Query: 529    tctccaacaaaaccgccactattgcctcaaaaacaacattaaatttattacaatttgatt 588
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185633 tctccaacaaaaccgccactattgcctcaaaaacaacattaaatttattacaatttgatt 185692


Query: 589    aattatatata 599
              |||||||||||
Sbjct: 185693 aattatatata 185703

 Score =  145 bits (73), Expect(4) = 0.0
 Identities = 76/77 (98%)
 Strand = Plus / Plus


Query: 44     tgaagattaataagtttatattaatattttttatttctttcttaataattagttcatgtt 103
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185055 tgaagattaataagtttatattaatattttttatttctttcttaataattagttcatgtt 185114


Query: 104    ttgcttcacctataaaa 120
              ||||||||||| |||||
Sbjct: 185115 ttgcttcacctgtaaaa 185131

 Score = 89.7 bits (45), Expect(4) = 0.0
 Identities = 45/45 (100%)
 Strand = Plus / Plus


Query: 131    ctaaatttaaaagtaatgaaaagagtgaaatatatgttgatagtc 175
              |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185235 ctaaatttaaaagtaatgaaaagagtgaaatatatgttgatagtc 185279

 Score = 38.2 bits (19), Expect(4) = 0.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus


Query: 1      atttatttgaaatattaat 19
              |||||||||||||||||||
Sbjct: 185012 atttatttgaaatattaat 185030

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 102105510
Number of Hits to DB: 797,471,888
Number of extensions: 52692238
Number of successful extensions: 4954751
Number of sequences better than 10.0: 339
Length of query: 605
Length of database: 101,790,757,118
Length adjustment: 23
Effective length of query: 582
Effective length of database: 99,442,330,388
Effective search space: 57875436285816
Effective search space used: 57875436285816
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7.30
Homology vs Protein 
Query= Contig-U04514-1 (Contig-U04514-1Q) /CSM_Contig/Contig-U04514-1Q.Seq.d
         (605 letters)

Database: nrp_A
           3,268,448 sequences; 1,061,185,681 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE010300_1489(AE010300|pid:none) Leptospira interrogans serovar ...    37   0.33
AE016823_2202(AE016823|pid:none) Leptospira interrogans serovar ...    37   0.33
AL844502_77(AL844502|pid:none) Plasmodium falciparum 3D7 chromos...    37   0.57
AC116960_55(AC116960|pid:none) Dictyostelium discoideum chromoso...    36   0.97
(Q8ILR9) RecName: Full=LRR domain-containing protein PF14_0175; ...    35   1.6
AE014297_2174(AE014297|pid:none) Drosophila melanogaster chromos...    35   2.2
CR940352_209(CR940352|pid:none) Theileria annulata strain Ankara...    35   2.2
AY051414_1(AY051414|pid:none) Drosophila melanogaster GH09326 fu...    35   2.2
A98211(A98211) hypothetical protein ECs4657 [imported] - Escheri...    34   2.8
CP000989_9(CP000989|pid:none) Borrelia duttonii Ly plasmid pl42,...    34   2.8
CP000937_1830(CP000937|pid:none) Francisella philomiragia subsp....    34   3.7
AE014188_465(AE014188|pid:none) Plasmodium falciparum 3D7 chromo...    33   4.8
CP000034_3710(CP000034|pid:none) Shigella dysenteriae Sd197, com...    33   6.3
CR940347_416(CR940347|pid:none) Theileria annulata strain Ankara...    33   6.3
CR628336_1945(CR628336|pid:none) Legionella pneumophila str. Par...    33   8.2
AC146308_2(AC146308|pid:none) Medicago truncatula clone mth2-10a...    33   8.2
CP001047_264(CP001047|pid:none) Mycoplasma arthritidis 158L3-1, ...    33   8.2
CP001034_1740(CP001034|pid:none) Natranaerobius thermophilus JW/...    33   8.2

>AE010300_1489(AE010300|pid:none) Leptospira interrogans serovar lai
           str. 56601 chromosome I, complete sequence.
          Length = 365

 Score = 37.4 bits (85), Expect = 0.33
 Identities = 29/106 (27%), Positives = 49/106 (46%), Gaps = 4/106 (3%)
 Frame = +1

Query: 127 KTKFKSNEKSEIYVDSQIKQMKLI----LNSDEFKNGNYNNFNSSMVKFSNQIQLFENDK 294
           K  F    K  ++ +S I++ + I        E+  G  + F  S ++F  Q +   N+K
Sbjct: 207 KFNFLKRNKKYLFENSLIEKQEEISLTYFQKIEYDKGRESKFKFSKIEF--QFKNVNNEK 264

Query: 295 ILAFFLDQIRDYFSEIGFDPITLESYIKTLCNTLLICKIPILGDAI 432
           I + FLDQ +D +S +   PIT    +  +  TL     P+ GD +
Sbjct: 265 IKSVFLDQEKDCYSFLLCKPIT--GRMHQIRATLFSLGFPLFGDKL 308

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3268448
Number of Hits to DB: 677,442,865
Number of extensions: 11661950
Number of successful extensions: 34878
Number of sequences better than 10.0: 18
Number of HSP's gapped: 34794
Number of HSP's successfully gapped: 18
Length of query: 201
Length of database: 1,061,185,681
Length adjustment: 122
Effective length of query: 79
Effective length of database: 662,435,025
Effective search space: 52332366975
Effective search space used: 52332366975
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 30 (16.2 bits)
PSORT 

 psg: 0.82  gvh: 0.73  alm: 0.18  top: 0.13  tms: 0.07  mit: 0.36  mip: 0.00
 nuc: 0.21  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 1.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 24.0 %: endoplasmic reticulum
	 20.0 %: cytoplasmic
	 16.0 %: nuclear
	 12.0 %: Golgi
	 12.0 %: mitochondrial
	  4.0 %: extracellular, including cell wall
	  4.0 %: peroxisomal
	  4.0 %: vacuolar
	  4.0 %: plasma membrane

>> prediction for Contig-U04514-1 is end
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 4
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0