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Dicty_cDB
Contig List | Clone List | cDNA Library List
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U04511-1
Contig ID Contig-U04511-1
Contig update 2001. 8.29
Contig sequence 
>Contig-U04511-1 (Contig-U04511-1Q) /CSM_Contig/Contig-U04511-1Q.Seq.d
CAAAAAAAAAAAAAAAAAAAAAAAAGTAATAAAAAAAATGTCAATTAAAT
CAATCACAGCCTTAATTTTTGTTGTTTTATGTATTGCAATTTCAAGTGCC
GATATTTGGAGCTATTGTCCAGGAAATATTGATGCAACTTTTACAATTGA
TACACTCACAGTTTCACCAGATCCACCATTAATTGGTAAAGCAGCTTTCG
TCAAATTAGCAGGTTCTTTAAGTGATGAAGTTACTGAAGGTGAATCAGTC
TTTAGTCTCCAAATATTACATTGATGGTGCTTGGAGAAATCTTCCAACTT
TCAAAAACGATGTTTGCAAATTACTCTCTTGTCCAGTTCAACCAGGTCCA
CTCGTTTTTAACACTACTATTAATGTCCCATTCATTACTCCACCAGGTCA
ATATCAAGGTACTCTTCAATTAACTGACCAAAATAACAAAAACATCTCAT
GTTTAACTTTTGCAACCACCTTAGCTTATTCAATCTAAAGGAATTCCAAA
ATAAATATTTATTTACTGAAAAAAAAAAAAAAAAAAAATCAAAACAAACA
AAACCTCAACATTGTTGAGTCGACTCCAAAGTTTCTTAAGTATTTATAGT
TTTTTATAATAAATTAGTTTTTGGGGTTCTCATTAAAAAAAAAAAAAAAA
AAA
Gap no gap
Contig length 653
Chromosome number (1..6, M) 3
Chromosome length 6358359
Start point 5483761
End point 5484414
Strand (PLUS/MINUS) PLUS
Number of clones 6
Number of EST 7
Link to clone list U04511
List of clone(s) 

est1=SSG835E,1,520
est2=SSB193E,5,522
est3=SSD424F,5,426
est4=SSH250E,8,654
est5=VSD795Z,12,400
est6=VSF484F,31,526
est7=VSF484Z,31,499
Translated Amino Acid sequence 
KKKKKKKKVIKKMSIKSITALIFVVLCIAISSADIWSYCPGNIDATFTIDTLTVSPDPPL
IGKAAFVKLAGSLSDEVTEGESVFSLQILH*wclekssnfqkrclqitllssstrstrf*
hyy*cpihystrsisryssin*pk*qkhlmfnfcnhlslfnlkefqnkylftekkkkkks
kqtkpqhc*vdskvs*vfivfynklvfgvlikkkkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
qkkkkkkksnkknvn*inhslnfccfmycnfkcrylellsrky*cnfyn*ythsftrsti
nw*ssfrqisrffk**sy*r*isl*spnitlmvlgeifqlsktmfanyslvqfnqvhsfl
tlllmshsllhqvnikvlfn*ltkitktshv*llqpp*liqskgipk*ifiy*kkkkkki
ktnktstllsrlqsflsiysfl**isfwgsh*kkkkk


Frame B:
KKKKKKKKVIKKMSIKSITALIFVVLCIAISSADIWSYCPGNIDATFTIDTLTVSPDPPL
IGKAAFVKLAGSLSDEVTEGESVFSLQILH*wclekssnfqkrclqitllssstrstrf*
hyy*cpihystrsisryssin*pk*qkhlmfnfcnhlslfnlkefqnkylftekkkkkks
kqtkpqhc*vdskvs*vfivfynklvfgvlikkkkkk


Frame C:
kkkkkkkk**kkcqlnqsqp*fllfyvlqfqvpifgaivqeilmqllqlihsqfhqihh*
lvkqlssn*qvl*vmkllkvnqslvskyyidgawrnlptfkndvckllscpvqpgplvfn
ttinvpfitppgqyqgtlqltdqnnkniscltfattlaysi*rnskiniyllkkkkkknq
nkqnlnivestpkflkyl*ffiin*flgfslkkkkkk
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U04511-1 (Contig-U04511-1Q)
/CSM_Contig/Contig-U04511-1Q.Seq.d
         (653 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U04511-1 (Contig-U04511-1Q) /CSM_Contig/Conti...   952  0.0
Contig-U12227-1 (Contig-U12227-1Q) /CSM_Contig/Conti...    38  0.012
Contig-U06682-1 (Contig-U06682-1Q) /CSM_Contig/Conti...    36  0.046
Contig-U04521-1 (Contig-U04521-1Q) /CSM_Contig/Conti...    36  0.046
Contig-U13975-1 (Contig-U13975-1Q) /CSM_Contig/Conti...    34  0.18
Contig-U13239-1 (Contig-U13239-1Q) /CSM_Contig/Conti...    34  0.18
Contig-U12450-1 (Contig-U12450-1Q) /CSM_Contig/Conti...    34  0.18
Contig-U10307-1 (Contig-U10307-1Q) /CSM_Contig/Conti...    34  0.18
Contig-U09751-1 (Contig-U09751-1Q) /CSM_Contig/Conti...    34  0.18
Contig-U04375-1 (Contig-U04375-1Q) /CSM_Contig/Conti...    34  0.18

>Contig-U04511-1 (Contig-U04511-1Q) /CSM_Contig/Contig-U04511-1Q.Seq.d
          Length = 653

 Score =  952 bits (480), Expect = 0.0
 Identities = 480/480 (100%)
 Strand = Plus / Plus

                                                                       
Query: 39  tgtcaattaaatcaatcacagccttaatttttgttgttttatgtattgcaatttcaagtg 98
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 39  tgtcaattaaatcaatcacagccttaatttttgttgttttatgtattgcaatttcaagtg 98

                                                                       
Query: 99  ccgatatttggagctattgtccaggaaatattgatgcaacttttacaattgatacactca 158
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 99  ccgatatttggagctattgtccaggaaatattgatgcaacttttacaattgatacactca 158

                                                                       
Query: 159 cagtttcaccagatccaccattaattggtaaagcagctttcgtcaaattagcaggttctt 218
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 159 cagtttcaccagatccaccattaattggtaaagcagctttcgtcaaattagcaggttctt 218

                                                                       
Query: 219 taagtgatgaagttactgaaggtgaatcagtctttagtctccaaatattacattgatggt 278
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 219 taagtgatgaagttactgaaggtgaatcagtctttagtctccaaatattacattgatggt 278

                                                                       
Query: 279 gcttggagaaatcttccaactttcaaaaacgatgtttgcaaattactctcttgtccagtt 338
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 gcttggagaaatcttccaactttcaaaaacgatgtttgcaaattactctcttgtccagtt 338

                                                                       
Query: 339 caaccaggtccactcgtttttaacactactattaatgtcccattcattactccaccaggt 398
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 caaccaggtccactcgtttttaacactactattaatgtcccattcattactccaccaggt 398

                                                                       
Query: 399 caatatcaaggtactcttcaattaactgaccaaaataacaaaaacatctcatgtttaact 458
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 caatatcaaggtactcttcaattaactgaccaaaataacaaaaacatctcatgtttaact 458

                                                                       
Query: 459 tttgcaaccaccttagcttattcaatctaaaggaattccaaaataaatatttatttactg 518
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 tttgcaaccaccttagcttattcaatctaaaggaattccaaaataaatatttatttactg 518


 Score =  190 bits (96), Expect = 1e-48
 Identities = 96/96 (100%)
 Strand = Plus / Plus

                                                                       
Query: 539 tcaaaacaaacaaaacctcaacattgttgagtcgactccaaagtttcttaagtatttata 598
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 tcaaaacaaacaaaacctcaacattgttgagtcgactccaaagtttcttaagtatttata 598

                                               
Query: 599 gttttttataataaattagtttttggggttctcatt 634
           ||||||||||||||||||||||||||||||||||||
Sbjct: 599 gttttttataataaattagtttttggggttctcatt 634


 Score = 32.2 bits (16), Expect = 0.71
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                           
Query: 499 aaataaatatttattt 514
           ||||||||||||||||
Sbjct: 514 aaataaatatttattt 499


>Contig-U12227-1 (Contig-U12227-1Q) /CSM_Contig/Contig-U12227-1Q.Seq.d
          Length = 1334

 Score = 38.2 bits (19), Expect = 0.012
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 226 tgaagttactgaaggtgaa 244
           |||||||||||||||||||
Sbjct: 788 tgaagttactgaaggtgaa 806


>Contig-U06682-1 (Contig-U06682-1Q) /CSM_Contig/Contig-U06682-1Q.Seq.d
          Length = 520

 Score = 36.2 bits (18), Expect = 0.046
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                 
Query: 592 atttatagttttttataataaa 613
           |||||||||||||| |||||||
Sbjct: 229 atttatagttttttgtaataaa 208


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7952
Number of Sequences: 6905
Number of extensions: 7952
Number of successful extensions: 983
Number of sequences better than 10.0: 110
length of query: 653
length of database: 5,674,871
effective HSP length: 16
effective length of query: 637
effective length of database: 5,564,391
effective search space: 3544517067
effective search space used: 3544517067
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2009. 6.21
Homology vs DNA 
Query= Contig-U04511-1 (Contig-U04511-1Q) /CSM_Contig/Contig-U04511-1Q.Seq.d
         (653 letters)

Database: ddbj_A
           102,105,510 sequences; 101,790,757,118 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(C89778) Dictyostelium discoideum slug cDNA, clone SSG835.        509   0.0    2
(AU265306) Dictyostelium discoideum vegetative cDNA clone:VS...   509   0.0    2
(C25686) Dictyostelium discoideum slug cDNA, clone SSB193.        502   0.0    2
(AU265307) Dictyostelium discoideum vegetative cDNA clone:VS...   444   0.0    2
(AU038083) Dictyostelium discoideum slug cDNA, clone SSH250.      509   0.0    3
(AU264574) Dictyostelium discoideum vegetative cDNA clone:VS...   438   0.0    2
(AU073454) Dictyostelium discoideum slug cDNA, clone SSH250.      416   e-112  1
(AU072103) Dictyostelium discoideum slug cDNA, clone SSD424.      408   e-109  1
(BJ445727) Dictyostelium discoideum cDNA clone:ddv60o07, 3' ...   107   8e-23  2
(CU207399) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    46   0.17   2
(DB776326) Apis mellifera head cDNA, RIKEN full-length enric...    48   0.42   1
(AX323517) Sequence 5 from Patent WO0192565.                       40   0.53   2
(GM995865) Sequence 5 from Patent EP2014776.                       40   0.53   2
(AE014134) Drosophila melanogaster chromosome 2L, complete s...    32   0.64   2
(AX346954) Sequence 2025 from Patent WO0200928.                    42   0.76   2
(CT555966) A BAC library has been constructed from cultivar ...    44   0.80   2
(AC008333) Drosophila melanogaster strain y chromosome 2 clo...    32   0.89   2
(AC016129) Drosophila melanogaster clone BACR07M22, complete...    32   0.90   2
(FF536003) CASRJ74TF CASR Manihot esculenta cDNA 5', mRNA se...    36   0.94   2
(CQ598211) Sequence 25969 from Patent WO0171042.                   32   1.0    2
(AC014708) Drosophila melanogaster, *** SEQUENCING IN PROGRE...    32   1.1    2
(FI417830) CH322-147A23.y CHORI-322 Drosophila melanogaster ...    32   1.2    2
(FI481035) CH322-77A21.x CHORI-322 Drosophila melanogaster g...    32   1.2    2
(FI398205) CH322-121E12.y CHORI-322 Drosophila melanogaster ...    32   1.2    2
(AC102549) Mus musculus chromosome 18, clone RP23-138E12, co...    46   1.7    1
(ER316080) 1092344143788 Global-Ocean-Sampling_GS-34-01-01-1...    46   1.7    1
(CW431935) fsbb001f146g11f0 Sorghum methylation filtered lib...    46   1.7    1
(CW086841) 104_431_10947237_116_32569_095 Sorghum methylatio...    46   1.7    1
(CU283201) Equus caballus GSS, BAC clone CH241-441D18, SP6 e...    46   1.7    1
(AC159471) Mus musculus 6 BAC RP24-148O24 (Roswell Park Canc...    40   2.0    4
(FG294517) 1108770708727 New World Screwworm Larvae 9387 EST...    38   2.5    2
(EJ265926) 1095351010350 Global-Ocean-Sampling_GS-27-01-01-1...    36   3.0    2
(AP008983) Clostridium phage c-st genomic DNA, complete genome.    36   3.8    6
(BD453005) Diagnosis of Diseases Associated with tumor suppr...    32   3.9    2
(AX251484) Sequence 452 from Patent WO0168912.                     32   3.9    2
(CU972425) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    38   6.5    3
(CR792457) Zebrafish DNA sequence from clone DKEY-228B2 in l...    44   6.6    1
(AC191859) Rhesus Macaque  BAC CH250-378O7 () complete seque...    44   6.6    1
(AM470659) Vitis vinifera contig VV78X084430.9, whole genome...    44   6.6    1
(AM459351) Vitis vinifera contig VV78X157409.3, whole genome...    44   6.6    1
(AC006931) Arabidopsis thaliana chromosome 2 clone F7D19 map...    44   6.6    1
(BD453024) Diagnosis of Diseases Associated with tumor suppr...    44   6.6    1
(AX344502) Sequence 349 from Patent WO0200926.                     44   6.6    1
(AX251503) Sequence 471 from Patent WO0168912.                     44   6.6    1
(AC002994) Homo sapiens chromosome 17, clone RP5-987K16, com...    44   6.6    1
(AC152903) Ornithorhynchus anatinus clone OA_Bb-75F7, WORKIN...    44   6.6    1
(CU928098) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   6.6    1
(CU693409) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   6.6    1
(AC027150) Homo sapiens chromosome 17 clone RP11-164C7 map 1...    44   6.6    1
(AC187449) Ornithorhynchus anatinus clone OA_Bb-393A8, WORKI...    44   6.6    1
(FH943624) CHO_OF6739xe10r1.ab1 CHO_OF6 Nicotiana tabacum ge...    44   6.6    1
(FH747478) CHO_OF5016xc15f1.ab1 CHO_OF5 Nicotiana tabacum ge...    44   6.6    1
(ET877345) CHO_OF095xk21f1.ab1 CHO_OF Nicotiana tabacum geno...    44   6.6    1
(AM657312) Entamoeba moshkovskii FIC GSS, clone mosh059b12.p1k.    44   6.6    1
(AM655803) Entamoeba moshkovskii FIC GSS, clone mosh031f01.q1k.    44   6.6    1
(DU050339) 144917 Tomato HindIII BAC Library Solanum lycoper...    44   6.6    1
(CZ097277) OM__Ba0103E01.r OM__Ba Oryza minuta genomic clone...    44   6.6    1
(CT556718) A BAC library has been constructed from cultivar ...    44   6.6    1
(BZ483196) BONJI57TR BO_1.6_2_KB_tot Brassica oleracea genom...    44   6.6    1
(EC911953) 3005 CM334 Root cDNA Capsicum annuum cDNA clone R...    44   6.6    1
(AV373567) Mus musculus adult male colon cDNA, RIKEN full-le...    44   6.6    1
(DT772864) 125665243 TH1 Tribolium castaneum cDNA clone 29M1...    44   6.6    1
(CV185508) taj14b01.x1 Hydra EST UCI 5 ALP Hydra magnipapill...    44   6.6    1
(CV151588) tai72b05.x2 Hydra EST UCI 5 ALP Hydra magnipapill...    44   6.6    1
(CV042108) tai66d06.x1 Hydra EST UCI 5 ALP Hydra magnipapill...    44   6.6    1
(CA302296) taa13a01.y1 Hydra cDNA library Hydra magnipapilla...    44   6.6    1
(CU914136) Medicago truncatula chromosome 5 clone mth2-55i14...    42   7.4    2
(AX344676) Sequence 101 from Patent WO0200927.                     40   8.2    3
(AP003515) Clostridium perfringens str. 13 plasmid pCP13 DNA...    30   8.6    6
(AC178284) Strongylocentrotus purpuratus clone R3-3093P21, W...    32   8.7    6
(CS623758) Sequence 309 from Patent WO2006071466.                  40   9.5    2
(CS623630) Sequence 181 from Patent WO2006071466.                  40   9.5    2
(CT027663) Medicago truncatula chromosome 5 clone mth2-139g2...    38   9.7    6

>(C89778) Dictyostelium discoideum slug cDNA, clone SSG835.
          Length = 518

 Score =  509 bits (257), Expect(2) = 0.0
 Identities = 257/257 (100%)
 Strand = Plus / Plus


Query: 262 aatattacattgatggtgcttggagaaatcttccaactttcaaaaacgatgtttgcaaat 321
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 aatattacattgatggtgcttggagaaatcttccaactttcaaaaacgatgtttgcaaat 319


Query: 322 tactctcttgtccagttcaaccaggtccactcgtttttaacactactattaatgtcccat 381
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 tactctcttgtccagttcaaccaggtccactcgtttttaacactactattaatgtcccat 379


Query: 382 tcattactccaccaggtcaatatcaaggtactcttcaattaactgaccaaaataacaaaa 441
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 tcattactccaccaggtcaatatcaaggtactcttcaattaactgaccaaaataacaaaa 439


Query: 442 acatctcatgtttaacttttgcaaccaccttagcttattcaatctaaaggaattccaaaa 501
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 acatctcatgtttaacttttgcaaccaccttagcttattcaatctaaaggaattccaaaa 499


Query: 502 taaatatttatttactg 518
           |||||||||||||||||
Sbjct: 500 taaatatttatttactg 516

 Score =  444 bits (224), Expect(2) = 0.0
 Identities = 224/224 (100%)
 Strand = Plus / Plus


Query: 39  tgtcaattaaatcaatcacagccttaatttttgttgttttatgtattgcaatttcaagtg 98
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38  tgtcaattaaatcaatcacagccttaatttttgttgttttatgtattgcaatttcaagtg 97


Query: 99  ccgatatttggagctattgtccaggaaatattgatgcaacttttacaattgatacactca 158
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98  ccgatatttggagctattgtccaggaaatattgatgcaacttttacaattgatacactca 157


Query: 159 cagtttcaccagatccaccattaattggtaaagcagctttcgtcaaattagcaggttctt 218
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 158 cagtttcaccagatccaccattaattggtaaagcagctttcgtcaaattagcaggttctt 217


Query: 219 taagtgatgaagttactgaaggtgaatcagtctttagtctccaa 262
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 218 taagtgatgaagttactgaaggtgaatcagtctttagtctccaa 261

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 102105510
Number of Hits to DB: 754,481,559
Number of extensions: 46167084
Number of successful extensions: 4272047
Number of sequences better than 10.0: 73
Length of query: 653
Length of database: 101,790,757,118
Length adjustment: 24
Effective length of query: 629
Effective length of database: 99,340,224,878
Effective search space: 62485001448262
Effective search space used: 62485001448262
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7.30
Homology vs Protein 
Query= Contig-U04511-1 (Contig-U04511-1Q) /CSM_Contig/Contig-U04511-1Q.Seq.d
         (653 letters)

Database: nrp_A
           3,268,448 sequences; 1,061,185,681 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF145038_1(EF145038|pid:none) Populus trichocarpa clone WS0111_L...    46   1e-08
AM425399_1(AM425399|pid:none) Vitis vinifera contig VV78X202323....    50   1e-08
AC084296_18(AC084296|pid:none) Oryza sativa chromosome 3 BAC OSJ...    47   2e-08
AM429733_1(AM429733|pid:none) Vitis vinifera contig VV78X195295....    42   7e-08
EU973929_1(EU973929|pid:none) Zea mays clone 424469 ML domain pr...    44   2e-07
EU975900_1(EU975900|pid:none) Zea mays clone 504766 ML domain pr...    42   6e-07
(Q4P580) RecName: Full=Phosphatidylglycerol/phosphatidylinositol...    41   9e-06
EF083906_1(EF083906|pid:none) Picea sitchensis clone WS0271_M08 ...    42   1e-04
AK227594_1(AK227594|pid:none) Arabidopsis thaliana mRNA for hypo...    49   1e-04
AJ853479_1(AJ853479|pid:none) Nicotiana glauca partial mRNA for ...    49   2e-04
AK060475_1(AK060475|pid:none) Oryza sativa Japonica Group cDNA c...    41   4e-04
(Q54KP7) RecName: Full=Putative phosphatidylglycerol/phosphatidy...    39   4e-04
FJ596177_1(FJ596177|pid:none) Capsicum annuum putative ML domain...    47   6e-04
(Q4X136) RecName: Full=Phosphatidylglycerol/phosphatidylinositol...    35   8e-04
AM920430_43(AM920430|pid:none) Penicillium chrysogenum Wisconsin...    34   0.002
CU928174_222(CU928174|pid:none) Zygosaccharomyces rouxii strain ...    39   0.003
(Q54SZ8) RecName: Full=Putative phosphatidylglycerol/phosphatidy...    42   0.012
AK176496_1(AK176496|pid:none) Arabidopsis thaliana mRNA, partial...    42   0.012
(Q5KIR9) RecName: Full=Phosphatidylglycerol/phosphatidylinositol...    30   0.022
AY086418_1(AY086418|pid:none) Arabidopsis thaliana clone 250294 ...    41   0.036
AC016795_7(AC016795|pid:none) Arabidopsis thaliana chromosome II...    41   0.036
BT041039_1(BT041039|pid:none) Zea mays full-length cDNA clone ZM...    40   0.046
CU928167_354(CU928167|pid:none) Kluyveromyces thermotolerans str...    39   0.18
(Q7RZ85) RecName: Full=Phosphatidylglycerol/phosphatidylinositol...    38   0.23
FN392319_1534(FN392319|pid:none) Pichia pastoris GS115 chromosom...    32   0.37
(Q12408) RecName: Full=Phosphatidylglycerol/phosphatidylinositol...    37   0.51
(Q6CNE0) RecName: Full=Phosphatidylglycerol/phosphatidylinositol...    37   0.67
CP000502_275(CP000502|pid:none) Pichia stipitis CBS 6054 chromos...    36   0.88
AY288142_1(AY288142|pid:none) Lepidoglyphus destructor type 2 al...    36   1.1
AY288148_1(AY288148|pid:none) Lepidoglyphus destructor type 2 al...    36   1.1
AY288145_1(AY288145|pid:none) Lepidoglyphus destructor type 2 al...    36   1.1
AY288146_1(AY288146|pid:none) Lepidoglyphus destructor type 2 al...    36   1.1
AY288143_1(AY288143|pid:none) Lepidoglyphus destructor type 2 al...    36   1.1
AJ487973_1(AJ487973|pid:none) Lepidoglyphus destructor Lep d 2.0...    35   2.0
(Q756Q3) RecName: Full=Phosphatidylglycerol/phosphatidylinositol...    35   2.0
U35145_2(U35145|pid:none) Parietaria mottle virus 3a protein and...    35   2.5
AM182746_2(AM182746|pid:none) Parietaria mottle virus MP gene fo...    35   2.5
S66499(S66499) allergen Lep d 1.02 precursor - Lepidoglyphus des...    35   2.5
BX538353_91(BX538353|pid:none) Cryptosporidium parvum chromosome...    34   3.3
AM182748_2(AM182748|pid:none) Parietaria mottle virus MP gene fo...    33   5.7
AM182749_2(AM182749|pid:none) Parietaria mottle virus MP gene fo...    33   7.4
AM182744_2(AM182744|pid:none) Parietaria mottle virus MP gene fo...    33   7.4
AJ427994_1(AJ427994|pid:none) Human immunodeficiency virus type ...    33   7.4

>EF145038_1(EF145038|pid:none) Populus trichocarpa clone WS0111_L02
           unknown mRNA.
          Length = 152

 Score = 45.8 bits (107), Expect(2) = 1e-08
 Identities = 20/69 (28%), Positives = 38/69 (55%), Gaps = 2/69 (2%)
 Frame = +3

Query: 261 KYYIDGAWRNLPTFK--NDVCKLLSCPVQPGPLVFNTTINVPFITPPGQYQGTLQLTDQN 434
           K  +D  +   P +   +D+C+   CPV  G  V + T  +P  TPPG Y  T+++ +
Sbjct: 71  KMRVDVRYFGFPVYSQDHDLCEETPCPVTSGNFVVSHTEELPGFTPPGSYSLTMKMINGE 130

Query: 435 NKNISCLTF 461
           ++ ++C++F
Sbjct: 131 SRELTCISF 139

 Score = 36.6 bits (83), Expect(2) = 1e-08
 Identities = 17/61 (27%), Positives = 32/61 (52%)
 Frame = +2

Query: 62  LIFVVLCIAISSADIWSYCPGNIDATFTIDTLTVSPDPPLIGKAAFVKLAGSLSDEVTEG 241
           LI + L + +  A  + YC  N D    +  + +SP+P   GK A   ++ + S+ +T+G
Sbjct: 11  LISLCLILPLIQASKFQYCDNNKDYDVKVSGVKISPNPVKKGKPATFTISATTSESITDG 70

Query: 242 E 244
           +
Sbjct: 71  K 71

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3268448
Number of Hits to DB: 843,445,296
Number of extensions: 14857955
Number of successful extensions: 45822
Number of sequences better than 10.0: 43
Number of HSP's gapped: 45737
Number of HSP's successfully gapped: 58
Length of query: 217
Length of database: 1,061,185,681
Length adjustment: 123
Effective length of query: 94
Effective length of database: 659,166,577
Effective search space: 61961658238
Effective search space used: 61961658238
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 31 (16.5 bits)
PSORT 

 psg: 0.70  gvh: 0.70  alm: 0.22  top: -0.27  tms: 0.07  mit: 0.33  mip: 0.00
 nuc: 0.20  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 1.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 24.0 %: mitochondrial
	 20.0 %: endoplasmic reticulum
	 16.0 %: cytoplasmic
	 16.0 %: nuclear
	 12.0 %: Golgi
	  4.0 %: vacuolar
	  4.0 %: extracellular, including cell wall
	  4.0 %: peroxisomal

>> prediction for Contig-U04511-1 is mit
VS (DIR, S) 2
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 4
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0