| Contig-U04470-1 |
| Contig ID |
Contig-U04470-1 |
| Contig update |
2002. 9.13 |
| Contig sequence |
 |
| Gap |
no gap |
| Contig length |
779 |
| Chromosome number (1..6, M) |
4 |
| Chromosome length |
5430582 |
| Start point |
914754 |
| End point |
913975 |
| Strand (PLUS/MINUS) |
MINUS |
| Number of clones |
2 |
| Number of EST |
2 |
| Link to clone list |
U04470 |
| List of clone(s) |
|
| Translated Amino Acid sequence |
|
| Translated Amino Acid sequence (All Frames) |
|
| own update |
2004. 6.10 |
| Homology vs CSM-cDNA |
|
| dna update |
2009. 6.21 |
| Homology vs DNA |
Query= Contig-U04470-1 (Contig-U04470-1Q) /CSM_Contig/Contig-U04470-1Q.Seq.d
(779 letters)
Database: ddbj_A
102,105,510 sequences; 101,790,757,118 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value N
(AY392440) Dictyostelium discoideum probable 3-oxoacyl-acyl-... 531 0.0 4
(AU037031) Dictyostelium discoideum slug cDNA, clone SSA779. 517 e-142 1
(AU072762) Dictyostelium discoideum slug cDNA, clone SSA779. 444 e-120 1
(AU074707) Dictyostelium discoideum slug cDNA, clone SSL596. 234 4e-76 3
(EJ439029) 1093015295305 Global-Ocean-Sampling_GS-28-01-01-1... 44 0.40 2
(AC119469) Rattus norvegicus clone CH230-365J20, WORKING DRA... 48 0.51 1
(AC178280) Strongylocentrotus purpuratus clone R3-3093L23, W... 48 0.51 1
(FM132387) Rattus norvegicus EST, 5'-end sequence, clone etn... 48 0.51 1
(BX510323) Zebrafish DNA sequence from clone CH211-266F12 in... 44 0.91 2
(AC115364) Rattus norvegicus clone CH230-39A17, *** SEQUENCI... 46 2.0 1
(EJ364536) 1092963700573 Global-Ocean-Sampling_GS-28-01-01-1... 46 2.0 1
(EI936994) VUH2-83C10TR VUUBBa (VUH2) Vigna unguiculata geno... 46 2.0 1
(AL340785) Tetraodon nigroviridis genome survey sequence T7 ... 46 2.0 1
(DH714096) Rattus norvegicus DNA, BAC clone: RNB1-278P07, 5'... 46 2.0 1
(CZ057524) OM__Ba0052A18.f OM__Ba Oryza minuta genomic clone... 46 2.0 1
(BZ058499) llf56a09.b1 B.oleracea002 Brassica oleracea genom... 46 2.0 1
(FM120592) Rattus norvegicus EST, 5'-end sequence, clone etn... 46 2.0 1
(FM111210) Rattus norvegicus EST, 5'-end sequence, clone etn... 46 2.0 1
(CU538950) human distal ileum metagenome sequence. 46 2.0 1
(AJ972409) Spiroplasma citri pBJS-O plasmid, complete sequence. 46 2.0 1
(AL792101) Xenopus tropicalis EST, clone TNeu119a14 5'. 36 3.4 2
(EL730515) CBSS9062.fwd NICHD_XGC_tropSp1 Xenopus (Silurana)... 36 4.3 2
(EK142791) 1095456003404 Global-Ocean-Sampling_GS-31-01-01-1... 40 4.4 2
(AY082376) Dictyostelium discoideum ABC transporter ABCC.14 ... 34 4.6 2
(CX462382) JGI_XZG25293.fwd NIH_XGC_tropGas7 Xenopus (Silura... 36 4.8 2
(DX912682) KBrH050G21R KBrH, Brassica rapa HindIII BAC libra... 38 4.9 2
(EK152792) 1095456061247 Global-Ocean-Sampling_GS-31-01-01-1... 32 5.2 2
(ED538767) KBrB132H15F KBrB, Brassica rapa BamHI BAC library... 36 6.3 2
(CU984562) Brassica rapa subsp. pekinensis clone KBrH088K13,... 32 7.2 7
(FP085385) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 40 7.7 5
(AC112149) Mus musculus BAC clone RP23-186F18 from chromosom... 44 7.9 1
(AP008240) Lotus japonicus genomic DNA, chromosome 4, clone:... 44 7.9 1
(DQ490056) Lactococcus phage Q54, complete genome. 44 7.9 1
(AP003100) Homo sapiens genomic DNA, chromosome 11 clone:RP1... 44 7.9 1
(AP003063) Homo sapiens genomic DNA, chromosome 11 clone:RP1... 44 7.9 1
(AC224443) Bos taurus clone CH240-484H18, WORKING DRAFT SEQU... 44 7.9 1
(AC172842) Bos taurus clone CH240-267L5, WORKING DRAFT SEQUE... 44 7.9 1
(AC021387) Homo sapiens clone RP11-27G22, WORKING DRAFT SEQU... 44 7.9 1
(AZ930404) 474.dhz53h02.s1 Saccharomyces unisporus NRRL Y-15... 44 7.9 1
(EK558557) 1095518008427 Global-Ocean-Sampling_GS-32-01-01-1... 44 7.9 1
(EK111685) 1092963119767 Global-Ocean-Sampling_GS-31-01-01-1... 44 7.9 1
(EK093690) 1092962020949 Global-Ocean-Sampling_GS-31-01-01-1... 44 7.9 1
(CU038476) Equus caballus GSS, BAC clone CH241-137D3, SP6 en... 44 7.9 1
(CU023597) Equus caballus GSS, BAC clone CH241-94D9, SP6 end... 44 7.9 1
(BH930972) odi10c04.b1 B.oleracea002 Brassica oleracea genom... 44 7.9 1
(BH705653) BOMAY19TF BO_2_3_KB Brassica oleracea genomic clo... 44 7.9 1
(DN303493) PL05003A2B01 cDNA from sexually mature hermaphodi... 44 7.9 1
(DN291391) PL030007A10H04 cDNA from sexually mature hermapho... 44 7.9 1
>(AY392440) Dictyostelium discoideum probable 3-oxoacyl-acyl-carrier
protein synthase gene, complete cds.
Length = 7536
Score = 531 bits (268), Expect(4) = 0.0
Identities = 268/268 (100%)
Strand = Plus / Minus
Query: 398 ggtttaaaaaatgcaattgattatttatggaaagaatggactaaaaaaccaacaatcgta 457
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5057 ggtttaaaaaatgcaattgattatttatggaaagaatggactaaaaaaccaacaatcgta 4998
Query: 458 gttacatatggttcaaccggtggtaaaggtagtaatgactttttatatacattattaggt 517
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4997 gttacatatggttcaaccggtggtaaaggtagtaatgactttttatatacattattaggt 4938
Query: 518 ggtgctcttggtatgaatttaattccacaagaaaaaacagttttaattccattatcacgt 577
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4937 ggtgctcttggtatgaatttaattccacaagaaaaaacagttttaattccattatcacgt 4878
Query: 578 tcattctatgttgaaaataccagtacattcattgacattgataaagatttattaccacac 637
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4877 tcattctatgttgaaaataccagtacattcattgacattgataaagatttattaccacac 4818
Query: 638 aaagaaaccttagtaaatgcaattgaag 665
||||||||||||||||||||||||||||
Sbjct: 4817 aaagaaaccttagtaaatgcaattgaag 4790
Score = 343 bits (173), Expect(4) = 0.0
Identities = 173/173 (100%)
Strand = Plus / Minus
Query: 124 ggaattattgtatcatccaccagaccaaatagagtaggtttccaaatcagtgaatgggcc 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5448 ggaattattgtatcatccaccagaccaaatagagtaggtttccaaatcagtgaatgggcc 5389
Query: 184 caaagaattttagctgaaaatattgactcttcttcaactcaaattaaaattatcgattta 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5388 caaagaattttagctgaaaatattgactcttcttcaactcaaattaaaattatcgattta 5329
Query: 244 caaaaagaaaatttaccactttatgatgaaccaaatccaccaaaagctggtaa 296
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5328 caaaaagaaaatttaccactttatgatgaaccaaatccaccaaaagctggtaa 5276
Score = 65.9 bits (33), Expect(4) = 0.0
Identities = 33/33 (100%)
Strand = Plus / Minus
Query: 92 aatggttagtaacactgcaacaaaagtaattgg 124
|||||||||||||||||||||||||||||||||
Sbjct: 5479 aatggttagtaacactgcaacaaaagtaattgg 5447
Score = 44.1 bits (22), Expect(4) = 0.0
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 1 attcaaacaaataattaaaaac 22
||||||||||||||||||||||
Sbjct: 5570 attcaaacaaataattaaaaac 5549
Score = 214 bits (108), Expect = 4e-51
Identities = 114/116 (98%)
Strand = Plus / Minus
Query: 292 ggtaaaccatatgtaaattctcatacaatggcatggtcagaaaagattgcaggaattgat 351
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5162 ggtaaaccatatgtaaattctcatacaatggcatggtcagaaaagattgcaggaattgat 5103
Query: 352 agttttatttttgtatcaccagtttataatggttcaattccaggtgggtttaaaaa 407
||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct: 5102 agttttatttttgtatcaccagtttataatggttcaattccaggtggtttaaaaaa 5047
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Number of Sequences: 102105510
Number of Hits to DB: 885,324,655
Number of extensions: 53553868
Number of successful extensions: 4535061
Number of sequences better than 10.0: 49
Length of query: 779
Length of database: 101,790,757,118
Length adjustment: 24
Effective length of query: 755
Effective length of database: 99,340,224,878
Effective search space: 75001869782890
Effective search space used: 75001869782890
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
|
| protein update |
2009. 7.30 |
| Homology vs Protein |
Query= Contig-U04470-1 (Contig-U04470-1Q) /CSM_Contig/Contig-U04470-1Q.Seq.d
(779 letters)
Database: nrp_A
3,268,448 sequences; 1,061,185,681 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AP006840_957(AP006840|pid:none) Symbiobacterium thermophilum IAM... 87 3e-21
CP000820_1548(CP000820|pid:none) Frankia sp. EAN1pec, complete g... 80 3e-20
CP000813_1704(CP000813|pid:none) Bacillus pumilus SAFR-032, comp... 80 2e-19
AM746676_1882(AM746676|pid:none) Sorangium cellulosum 'So ce 56'... 74 2e-18
CP000416_248(CP000416|pid:none) Lactobacillus brevis ATCC 367, c... 72 2e-18
AL939126_246(AL939126|pid:none) Streptomyces coelicolor A3(2) co... 77 4e-18
AM269950_32(AM269950|pid:none) Aspergillus niger contig An01c003... 69 2e-16
CP000724_1903(CP000724|pid:none) Alkaliphilus metalliredigens QY... 70 1e-15
BA000012_4001(BA000012|pid:none) Mesorhizobium loti MAFF303099 D... 68 2e-15
AP009044_1118(AP009044|pid:none) Corynebacterium glutamicum R DN... 72 7e-15
CP000521_19(CP000521|pid:none) Acinetobacter baumannii ATCC 1797... 61 2e-14
CP001172_3422(CP001172|pid:none) Acinetobacter baumannii AB307-0... 61 2e-14
CP000631_210(CP000631|pid:none) Agrobacterium radiobacter K84 pl... 69 5e-14
CP001615_1555(CP001615|pid:none) Exiguobacterium sp. AT1b, compl... 61 5e-14
CP001349_2308(CP001349|pid:none) Methylobacterium nodulans ORS 2... 64 3e-13
CP001618_3527(CP001618|pid:none) Beutenbergia cavernae DSM 12333... 63 6e-13
CP000875_1659(CP000875|pid:none) Herpetosiphon aurantiacus ATCC ... 58 7e-13
BX640415_24(BX640415|pid:none) Bordetella pertussis strain Toham... 75 2e-12
CP001022_1126(CP001022|pid:none) Exiguobacterium sibiricum 255-1... 54 3e-12
CP000705_29(CP000705|pid:none) Lactobacillus reuteri DSM 20016, ... 73 9e-12
AY026363_11(AY026363|pid:none) Streptomyces venezuelae decarboxy... 71 3e-11
CP001624_271(CP001624|pid:none) Rhizobium leguminosarum bv. trif... 52 5e-11
AY233211_15(AY233211|pid:none) Streptomyces griseoflavus strain ... 69 1e-10
BA000012_2008(BA000012|pid:none) Mesorhizobium loti MAFF303099 D... 49 3e-10
CP000103_1464(CP000103|pid:none) Nitrosospira multiformis ATCC 2... 68 4e-10
AL939132_199(AL939132|pid:none) Streptomyces coelicolor A3(2) co... 53 4e-10
CP000489_327(CP000489|pid:none) Paracoccus denitrificans PD1222 ... 49 9e-10
BA000035_2752(BA000035|pid:none) Corynebacterium efficiens YS-31... 66 1e-09
AP007155_295(AP007155|pid:none) Aspergillus oryzae RIB40 genomic... 66 1e-09
CU928165_266(CU928165|pid:none) Kluyveromyces thermotolerans str... 66 1e-09
AP009044_2873(AP009044|pid:none) Corynebacterium glutamicum R DN... 65 2e-09
AL954747_1005(AL954747|pid:none) Nitrosomonas europaea ATCC 1971... 65 3e-09
CP000450_2371(CP000450|pid:none) Nitrosomonas eutropha C91, comp... 61 4e-08
(Q07923) RecName: Full=NAD(P)H-dependent FMN reductase LOT6; ... 60 1e-07
CP000667_1474(CP000667|pid:none) Salinispora tropica CNB-440, co... 46 2e-07
CP000383_1720(CP000383|pid:none) Cytophaga hutchinsonii ATCC 334... 42 3e-07
(Q9USJ6) RecName: Full=NAD(P)H-dependent FMN reductase C4B3.06c;... 56 1e-06
CP001656_5994(CP001656|pid:none) Paenibacillus sp. JDR-2, comple... 55 3e-06
FJ670504_13(FJ670504|pid:none) Micromonospora sp. Tu 6368 hypoth... 43 5e-06
AP007161_313(AP007161|pid:none) Aspergillus oryzae RIB40 genomic... 52 2e-05
CP000491_65(CP000491|pid:none) Paracoccus denitrificans PD1222 p... 39 2e-05
FJ479754_24(FJ479754|pid:none) Streptomyces aureofaciens strain ... 40 3e-05
AL939112_223(AL939112|pid:none) Streptomyces coelicolor A3(2) co... 36 3e-05
CP000416_2124(CP000416|pid:none) Lactobacillus brevis ATCC 367, ... 42 1e-04
CP000896_220(CP000896|pid:none) Acholeplasma laidlawii PG-8A, co... 48 3e-04
AP006618_2976(AP006618|pid:none) Nocardia farcinica IFM 10152 DN... 39 4e-04
AM420293_1505(AM420293|pid:none) Saccharopolyspora erythraea NRR... 37 4e-04
AJ628018_43(AJ628018|pid:none) Streptomyces sp. SCC 2136 deoxysu... 35 8e-04
AE017347_396(AE017347|pid:none) Cryptococcus neoformans var. neo... 46 0.002
CP000251_3187(CP000251|pid:none) Anaeromyxobacter dehalogenans 2... 39 0.002
DQ219974_1(DQ219974|pid:none) Lactobacillus reuteri putative fla... 45 0.003
CP001114_1178(CP001114|pid:none) Deinococcus deserti VCD115, com... 44 0.004
CP000943_1291(CP000943|pid:none) Methylobacterium sp. 4-46, comp... 44 0.008
CP000628_3241(CP000628|pid:none) Agrobacterium radiobacter K84 c... 34 0.011
AM236086_781(AM236086|pid:none) Rhizobium leguminosarum bv. vici... 43 0.013
CP000411_788(CP000411|pid:none) Oenococcus oeni PSU-1, complete ... 43 0.013
CU458896_3616(CU458896|pid:none) Mycobacterium abscessus chromos... 33 0.014
CP000759_269(CP000759|pid:none) Ochrobactrum anthropi ATCC 49188... 32 0.014
CP001623_516(CP001623|pid:none) Rhizobium leguminosarum bv. trif... 42 0.017
CP000249_1868(CP000249|pid:none) Frankia sp. CcI3, complete geno... 31 0.018
CT573213_3202(CT573213|pid:none) Frankia alni str. ACN14A chromo... 34 0.018
AP008957_1886(AP008957|pid:none) Rhodococcus erythropolis PR4 DN... 34 0.018
CP000138_228(CP000138|pid:none) Rhizobium etli CFN 42 plasmid p4... 42 0.022
AM746676_1516(AM746676|pid:none) Sorangium cellulosum 'So ce 56'... 42 0.022
CP000820_4843(CP000820|pid:none) Frankia sp. EAN1pec, complete g... 31 0.023
CP000738_1527(CP000738|pid:none) Sinorhizobium medicae WSM419, c... 32 0.023
AP006618_852(AP006618|pid:none) Nocardia farcinica IFM 10152 DNA... 35 0.023
CP001131_3285(CP001131|pid:none) Anaeromyxobacter sp. K, complet... 35 0.030
AB2734(AB2734) NADH dehydrogenase I chain M nuoM [imported] - Ag... 41 0.050
CP000319_3748(CP000319|pid:none) Nitrobacter hamburgensis X14, c... 41 0.050
AF164961_9(AF164961|pid:none) Streptomyces fradiae strain T#2717... 36 0.050
CP001389_1638(CP001389|pid:none) Rhizobium sp. NGR234, complete ... 30 0.065
AL591688_1829(AL591688|pid:none) Sinorhizobium meliloti 1021 com... 30 0.084
AE006468_3745(AE006468|pid:none) Salmonella enterica subsp. ente... 37 0.14
AE017220_3763(AE017220|pid:none) Salmonella enterica subsp. ente... 37 0.14
AY434091_2(AY434091|pid:none) Salmonella enterica strain 507Sa01... 37 0.14
CU928158_3849(CU928158|pid:none) Escherichia fergusonii ATCC 354... 38 0.14
CP000886_4656(CP000886|pid:none) Salmonella enterica subsp. ente... 37 0.14
CP001138_3805(CP001138|pid:none) Salmonella enterica subsp. ente... 37 0.14
CP001113_3868(CP001113|pid:none) Salmonella enterica subsp. ente... 37 0.14
DQ987901_1(DQ987901|pid:none) Escherichia coli chromate reductas... 36 0.14
CP000713_2279(CP000713|pid:none) Psychrobacter sp. PRwf-1, compl... 39 0.14
CP000117_2432(CP000117|pid:none) Anabaena variabilis ATCC 29413,... 39 0.14
CP000249_4118(CP000249|pid:none) Frankia sp. CcI3, complete geno... 39 0.19
CP000817_143(CP000817|pid:none) Lysinibacillus sphaericus C3-41,... 39 0.19
CT573326_3293(CT573326|pid:none) Pseudomonas entomophila str. L4... 39 0.19
AM933172_3650(AM933172|pid:none) Salmonella enterica subsp. ente... 36 0.23
CP000880_3639(CP000880|pid:none) Salmonella enterica subsp. ariz... 36 0.23
CP000822_57(CP000822|pid:none) Citrobacter koseri ATCC BAA-895, ... 36 0.23
CP000113_6335(CP000113|pid:none) Myxococcus xanthus DK 1622, com... 38 0.32
AM286415_4019(AM286415|pid:none) Yersinia enterocolitica subsp. ... 37 0.39
AM260479_1653(AM260479|pid:none) Ralstonia eutropha H16 chromoso... 38 0.42
CP000133_3945(CP000133|pid:none) Rhizobium etli CFN 42, complete... 30 0.50
CP000384_1801(CP000384|pid:none) Mycobacterium sp. MCS, complete... 30 0.50
AM746676_8854(AM746676|pid:none) Sorangium cellulosum 'So ce 56'... 37 0.55
CP000474_3858(CP000474|pid:none) Arthrobacter aurescens TC1, com... 37 0.55
CP000076_3242(CP000076|pid:none) Pseudomonas fluorescens Pf-5, c... 37 0.55
CP000058_1643(CP000058|pid:none) Pseudomonas syringae pv. phaseo... 37 0.55
CP000036_3409(CP000036|pid:none) Shigella boydii Sb227, complete... 36 0.65
CP000075_1766(CP000075|pid:none) Pseudomonas syringae pv. syring... 37 0.72
AF375641_1(AF375641|pid:none) Pseudomonas putida MK1 chromate re... 37 0.72
CP001341_3363(CP001341|pid:none) Arthrobacter chlorophenolicus A... 37 0.72
AP009240_3999(AP009240|pid:none) Escherichia coli SE11 DNA, comp... 35 0.84
AE014075_4537(AE014075|pid:none) Escherichia coli CFT073, comple... 35 0.84
CU928162_4290(CU928162|pid:none) Escherichia coli ED1a chromosom... 35 0.84
CU651637_3600(CU651637|pid:none) Escherichia coli LF82 chromosom... 35 0.84
FM180568_4024(FM180568|pid:none) Escherichia coli 0127:H6 E2348/... 35 0.84
CP000970_3925(CP000970|pid:none) Escherichia coli SMS-3-5, compl... 35 0.84
CP000155_4796(CP000155|pid:none) Hahella chejuensis KCTC 2396, c... 37 0.93
AE015451_4087(AE015451|pid:none) Pseudomonas putida KT2440 compl... 36 1.2
CP000250_2510(CP000250|pid:none) Rhodopseudomonas palustris HaA2... 36 1.2
CU234118_3232(CU234118|pid:none) Bradyrhizobium sp. ORS278,compl... 36 1.2
CP001151_142(CP001151|pid:none) Rhodobacter sphaeroides KD131 ch... 36 1.2
CP000383_2691(CP000383|pid:none) Cytophaga hutchinsonii ATCC 334... 36 1.2
CP000680_4028(CP000680|pid:none) Pseudomonas mendocina ymp, comp... 36 1.2
CP000949_3440(CP000949|pid:none) Pseudomonas putida W619, comple... 36 1.2
AJ871581_35(AJ871581|pid:none) Streptomyces achromogenes subsp. ... 36 1.2
CP000578_783(CP000578|pid:none) Rhodobacter sphaeroides ATCC 170... 36 1.6
CP000494_4035(CP000494|pid:none) Bradyrhizobium sp. BTAi1, compl... 36 1.6
AL935252_200(AL935252|pid:none) Lactobacillus plantarum strain W... 36 1.6
CP000633_1272(CP000633|pid:none) Agrobacterium vitis S4 chromoso... 36 1.6
CR954246_2808(CR954246|pid:none) Pseudoalteromonas haloplanktis ... 35 2.1
(P50974) RecName: Full=NADH-quinone oxidoreductase subunit M; ... 35 2.1
CP000687_1984(CP000687|pid:none) Actinobacillus pleuropneumoniae... 35 2.1
CP000712_1706(CP000712|pid:none) Pseudomonas putida F1, complete... 35 2.1
CU914166_530(CU914166|pid:none) Ralstonia solanacearum strain IP... 35 2.1
AJ507836_54(AJ507836|pid:none) Arthrobacter nicotinovorans pAO1 ... 35 2.1
CP001029_2301(CP001029|pid:none) Methylobacterium populi BJ001, ... 35 2.1
CP000387_1314(CP000387|pid:none) Streptococcus sanguinis SK36, c... 35 2.7
CP001298_2525(CP001298|pid:none) Methylobacterium chloromethanic... 35 2.7
CP001510_2190(CP001510|pid:none) Methylobacterium extorquens AM1... 35 2.7
CP000908_2344(CP000908|pid:none) Methylobacterium extorquens PA1... 35 2.7
CP000267_3439(CP000267|pid:none) Rhodoferax ferrireducens T118, ... 35 2.7
CP000783_3866(CP000783|pid:none) Enterobacter sakazakii ATCC BAA... 32 3.0
AP008955_2305(AP008955|pid:none) Brevibacillus brevis NBRC 10059... 33 3.0
CP000250_2763(CP000250|pid:none) Rhodopseudomonas palustris HaA2... 35 3.6
BX897699_1570(BX897699|pid:none) Bartonella henselae strain Hous... 35 3.6
AM849034_2986(AM849034|pid:none) Clavibacter michiganensis subsp... 34 4.6
AM158258_2(AM158258|pid:none) Pseudomonas sp. Y1000 arsB and pyu... 34 4.6
CP001275_1708(CP001275|pid:none) Thermomicrobium roseum DSM 5159... 34 4.6
CP000575_201(CP000575|pid:none) Staphylothermus marinus F1, comp... 34 6.1
CP000878_47(CP000878|pid:none) Prochlorococcus marinus str. MIT ... 34 6.1
CP000444_3869(CP000444|pid:none) Shewanella sp. MR-7, complete g... 34 6.1
CP000444_1173(CP000444|pid:none) Shewanella sp. MR-7, complete g... 34 6.1
CP000140_3403(CP000140|pid:none) Parabacteroides distasonis ATCC... 34 6.1
AY596297_864(AY596297|pid:none) Haloarcula marismortui ATCC 4304... 34 6.1
CP001053_2935(CP001053|pid:none) Burkholderia phytofirmans PsJN ... 33 7.9
AB088043_2(AB088043|pid:none) Pseudomonas fluorescens 3-hydroxya... 33 7.9
AM946015_889(AM946015|pid:none) Streptococcus uberis 0140J compl... 33 7.9
CP000780_1460(CP000780|pid:none) Candidatus Methanoregula boonei... 33 7.9
CP000511_2005(CP000511|pid:none) Mycobacterium vanbaalenii PYR-1... 30 8.2
>AP006840_957(AP006840|pid:none) Symbiobacterium thermophilum IAM
14863 DNA, complete genome.
Length = 194
Score = 86.7 bits (213), Expect(2) = 3e-21
Identities = 41/95 (43%), Positives = 56/95 (58%)
Frame = +1
Query: 121 LGIIVSSTRPNRVGFQISEWAQRILAENIDSSSTQIKIIDLQKENLPLYDEPNPPKAGKP 300
+GII+ STRP R G ++ W + D+ + +++DL+ NLP+YDEP PP GK
Sbjct: 4 IGIIIGSTRPGRNGEAVARWVYEHARKRTDA---EFELVDLKDFNLPVYDEPVPPSYGKN 60
Query: 301 YVNSHTMAWSEKIAGIDSFIFVSPVYNGSIPGGFK 405
Y + HT WS KI D FIFV+P YN + G K
Sbjct: 61 YQHEHTRRWSAKIDSFDGFIFVTPEYNHATSGALK 95
Score = 38.9 bits (89), Expect(2) = 3e-21
Identities = 19/38 (50%), Positives = 24/38 (63%)
Frame = +2
Query: 401 LKNAIDYLWKEWTKKPTIVVTYGSTGGKGSNDFLYTLL 514
LKNAIDYL+ EW K +V YGS GG + + L +L
Sbjct: 94 LKNAIDYLYLEWNNKAAGLVGYGSLGGARAIENLRAIL 131
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3268448
Number of Hits to DB: 1,136,108,769
Number of extensions: 22234292
Number of successful extensions: 54825
Number of sequences better than 10.0: 151
Number of HSP's gapped: 54748
Number of HSP's successfully gapped: 238
Length of query: 259
Length of database: 1,061,185,681
Length adjustment: 126
Effective length of query: 133
Effective length of database: 649,361,233
Effective search space: 86365043989
Effective search space used: 86365043989
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 31 (16.5 bits)
|
| PSORT |
|
| VS (DIR, S) |
0 |
| VH (FL, L) |
0 |
| VF (FL, S) |
0 |
| AH (FL, L) |
0 |
| AF (FL, S) |
0 |
| SL (DIR, L) |
0 |
| SS (DIR, S) |
2 |
| SH (FL, L) |
0 |
| SF (FL, S) |
0 |
| CH (FL, L) |
0 |
| CF (FL, S) |
0 |
| FCL (DIR, L) |
0 |
| FC (DIR, S) |
0 |
| FC-IC (SUB) |
0 |