Contig-U04465-1
Contig ID Contig-U04465-1
Contig update 2002. 9.13
Contig sequence
>Contig-U04465-1 (Contig-U04465-1Q) /CSM_Contig/Contig-U04465-1Q.Seq.d
GTCTAAATTTGTACATATATTAATTTTAAATTTGTTAGACAGAATTTACA
GGTTGGAAAAAAAAAAAAAAAAAAGAAGAAAGATATAAGAAAAAGATGGC
CACAATTACAAATGCAGACCCCATCTAAAATATTCATTTGGACCCAGTTT
TNAAAAACAGCACCCAATATTTCCACTGGTCACATTCAATTCCCATTGTG
AAGAATCTGTTAAAGATTACAGATTGTTGAAAATGTTTTCAAACAATTAC
AAGGAGCATATCAAACATATAAATTTTTTGAATCAAAACTTTCAAATAAT
ATTTCACTGTTAACTCCAAGATCAAAACAATTACAAGAATCTTTAGATAT
TGTCGATCATGTTGAAAATAAATCTAATGAATCATTTTCAGTACAATATG
AACTTTCAGAAGGTGTTTACTCTTCAGCACAAGTAAATGAACCAAAATCA
ATTTATTTATGGTTAGGTGCAAATGTAATGTTGGAATATTCATTTGAAGA
AGCAAGAGAGGTATTAAGAAAGAATAAAGATACAGTCGATCGTCAACTTA
GTGAGAGCATTCAAGATTTAGGTTTTGTAAAGGATCAAATCACTACAACT
GATGTTAACGTTTCACGTGTTTACAATTATGATATCATTCAAAAAAGAAA
ATTAAAACTATCAGGTAAAACTGAAGAAGAGGAAAAATAAAAAAAAAAAA
AATAAAAAAAGTAAAAAAAAAAAAAATAAAAAAAGTAAAAATAAAAATAT
AATTAACTTTAAAAAAAAAAAAT

Gap no gap
Contig length 773
Chromosome number (1..6, M) 4
Chromosome length 5430582
Start point 4504522
End point 4503798
Strand (PLUS/MINUS) MINUS
Number of clones 6
Number of EST 7
Link to clone list U04465
List of clone(s)

est1=SSA756F,1,245
est2=SSJ203E,18,768
est3=SSE728Z,92,741
est4=VSE760Z,159,765
est5=VSE765Z,161,765
est6=VSA801Z,329,740
est7=SSA756Z,361,777
Translated Amino Acid sequence
v*ictyinfkfvrqnlqvgkkkkkkkkdirkrwpqlqmqtpskifiwtqfxktapnistg
hiqfpl*ric*RLQIVENVFKQLQGAYQTYKFFESKLSNNISLLTPRSKQLQESLDIVDH
VENKSNESFSVQYELSEGVYSSAQVNEPKSIYLWLGANVMLEYSFEEAREVLRKNKDTVD
RQLSESIQDLGFVKDQITTTDVNVSRVYNYDIIQKRKLKLSGKTEEEEK*kkkk*kk*kk
kk*kk*k*kyn*l*kkk


Translated Amino Acid sequence (All Frames)
Frame A:
v*ictyinfkfvrqnlqvgkkkkkkkkdirkrwpqlqmqtpskifiwtqfxktapnistg
hiqfpl*ric*RLQIVENVFKQLQGAYQTYKFFESKLSNNISLLTPRSKQLQESLDIVDH
VENKSNESFSVQYELSEGVYSSAQVNEPKSIYLWLGANVMLEYSFEEAREVLRKNKDTVD
RQLSESIQDLGFVKDQITTTDVNVSRVYNYDIIQKRKLKLSGKTEEEEK*kkkk*kk*kk
kk*kk*k*kyn*l*kkk


Frame B:
skfvhililnlldriyrlekkkkkrrki*ekdghnykcrphlkysfgpsfxkqhpifplv
tfnshceesvkdyrllkmfsnnykehikhinflnqnfqiifhc*lqdqnnyknl*ilsim
lkinlmnhfqynmnfqkvftlqhk*mnqnqfiyg*vqm*cwnihlkkqery*erikiqsi
vnlvrafki*vl*rikslqlmltfhvftimisfkken*nyqvklkkrknkkkknkkskkk
knkksknkniinfkkkk


Frame C:
lnlyiy*f*ic*teftgwkkkkkkeerykkkmatitnadpi*nihldpvxknstqyfhws
hsipivknllkitdc*kcfqtitrsisni*if*iktfk*yftvnskiktitrifrycrsc
*k*i**iifsti*tfrrcllfstsk*tkinlfmvrckcnvgifi*rskrgikke*rysrs
st**ehsrfrfckgsnhyn*c*rftclql*yhskkkiktir*n*rrgkikkkkikkvkkk
kikkvkiki*ltlkkkn


own update 2004. 6.10
Homology vs CSM-cDNA
Query= Contig-U04465-1 (Contig-U04465-1Q)
/CSM_Contig/Contig-U04465-1Q.Seq.d
(773 letters)

Database: CSM
6905 sequences; 5,674,871 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U04465-1 (Contig-U04465-1Q) /CSM_Contig/Conti... 1199 0.0
Contig-U06747-1 (Contig-U06747-1Q) /CSM_Contig/Conti... 44 2e-04
Contig-U01918-1 (Contig-U01918-1Q) /CSM_Contig/Conti... 40 0.003
Contig-U12777-1 (Contig-U12777-1Q) /CSM_Contig/Conti... 36 0.054
Contig-U11174-1 (Contig-U11174-1Q) /CSM_Contig/Conti... 36 0.054
Contig-U10996-1 (Contig-U10996-1Q) /CSM_Contig/Conti... 36 0.054
Contig-U10357-1 (Contig-U10357-1Q) /CSM_Contig/Conti... 36 0.054
Contig-U08962-1 (Contig-U08962-1Q) /CSM_Contig/Conti... 36 0.054
Contig-U01511-1 (Contig-U01511-1Q) /CSM_Contig/Conti... 36 0.054
Contig-U14697-1 (Contig-U14697-1Q) /CSM_Contig/Conti... 34 0.21

>Contig-U04465-1 (Contig-U04465-1Q) /CSM_Contig/Contig-U04465-1Q.Seq.d
Length = 773

Score = 1199 bits (605), Expect = 0.0
Identities = 608/608 (100%)
Strand = Plus / Plus


Query: 75 gaagaaagatataagaaaaagatggccacaattacaaatgcagaccccatctaaaatatt 134
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75 gaagaaagatataagaaaaagatggccacaattacaaatgcagaccccatctaaaatatt 134


Query: 135 catttggacccagttttnaaaaacagcacccaatatttccactggtcacattcaattccc 194
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135 catttggacccagttttnaaaaacagcacccaatatttccactggtcacattcaattccc 194


Query: 195 attgtgaagaatctgttaaagattacagattgttgaaaatgttttcaaacaattacaagg 254
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 attgtgaagaatctgttaaagattacagattgttgaaaatgttttcaaacaattacaagg 254


Query: 255 agcatatcaaacatataaattttttgaatcaaaactttcaaataatatttcactgttaac 314
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 agcatatcaaacatataaattttttgaatcaaaactttcaaataatatttcactgttaac 314


Query: 315 tccaagatcaaaacaattacaagaatctttagatattgtcgatcatgttgaaaataaatc 374
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 tccaagatcaaaacaattacaagaatctttagatattgtcgatcatgttgaaaataaatc 374


Query: 375 taatgaatcattttcagtacaatatgaactttcagaaggtgtttactcttcagcacaagt 434
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 taatgaatcattttcagtacaatatgaactttcagaaggtgtttactcttcagcacaagt 434


Query: 435 aaatgaaccaaaatcaatttatttatggttaggtgcaaatgtaatgttggaatattcatt 494
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 aaatgaaccaaaatcaatttatttatggttaggtgcaaatgtaatgttggaatattcatt 494


Query: 495 tgaagaagcaagagaggtattaagaaagaataaagatacagtcgatcgtcaacttagtga 554
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 tgaagaagcaagagaggtattaagaaagaataaagatacagtcgatcgtcaacttagtga 554


Query: 555 gagcattcaagatttaggttttgtaaaggatcaaatcactacaactgatgttaacgtttc 614
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 gagcattcaagatttaggttttgtaaaggatcaaatcactacaactgatgttaacgtttc 614


Query: 615 acgtgtttacaattatgatatcattcaaaaaagaaaattaaaactatcaggtaaaactga 674
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 acgtgtttacaattatgatatcattcaaaaaagaaaattaaaactatcaggtaaaactga 674


Query: 675 agaagagg 682
||||||||
Sbjct: 675 agaagagg 682


Score = 111 bits (56), Expect = 1e-24
Identities = 56/56 (100%)
Strand = Plus / Plus


Query: 1 gtctaaatttgtacatatattaattttaaatttgttagacagaatttacaggttgg 56
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gtctaaatttgtacatatattaattttaaatttgttagacagaatttacaggttgg 56


>Contig-U06747-1 (Contig-U06747-1Q) /CSM_Contig/Contig-U06747-1Q.Seq.d
Length = 521

Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus


Query: 317 caagatcaaaacaattacaaga 338
||||||||||||||||||||||
Sbjct: 25 caagatcaaaacaattacaaga 46


>Contig-U01918-1 (Contig-U01918-1Q) /CSM_Contig/Contig-U01918-1Q.Seq.d
Length = 1761

Score = 40.1 bits (20), Expect = 0.003
Identities = 20/20 (100%)
Strand = Plus / Plus


Query: 642 aaaaagaaaattaaaactat 661
||||||||||||||||||||
Sbjct: 252 aaaaagaaaattaaaactat 271


Database: CSM
Posted date: Jun 9, 2004 7:35 PM
Number of letters in database: 5,674,871
Number of sequences in database: 6905

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 12,648
Number of Sequences: 6905
Number of extensions: 12648
Number of successful extensions: 1451
Number of sequences better than 10.0: 186
length of query: 773
length of database: 5,674,871
effective HSP length: 16
effective length of query: 757
effective length of database: 5,564,391
effective search space: 4212243987
effective search space used: 4212243987
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2009. 6.21
Homology vs DNA
Query= Contig-U04465-1 (Contig-U04465-1Q) /CSM_Contig/Contig-U04465-1Q.Seq.d
(773 letters)

Database: ddbj_A
102,105,510 sequences; 101,790,757,118 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(C90831) Dictyostelium discoideum slug cDNA, clone SSJ203. 521 0.0 2
(C84716) Dictyostelium discoideum slug cDNA, clone SSE728. 793 0.0 2
(AU263358) Dictyostelium discoideum vegetative cDNA clone:VS... 793 0.0 1
(AU263355) Dictyostelium discoideum vegetative cDNA clone:VS... 793 0.0 1
(AU261747) Dictyostelium discoideum vegetative cDNA clone:VS... 617 e-172 1
(AU037017) Dictyostelium discoideum slug cDNA, clone SSA756. 539 e-149 1
(AU072753) Dictyostelium discoideum slug cDNA, clone SSA756. 111 1e-32 3
(CP000942) Ureaplasma parvum serovar 3 str. ATCC 27815, comp... 44 2e-04 10
(AF222894) Ureaplasma parvum serovar 3 str. ATCC 700970, com... 44 2e-04 10
(FL503148) vfase1ng_UP_003_D07_06MAY2004_057 Vicia faba cv. ... 50 0.021 2
(EW766934) ST020031A20F07 Normalized and subtracted western ... 52 0.032 1
(DT613944) ACAG-aaa43e04.g1 Hydra_EST_UCI-9 Hydra magnipapil... 38 0.099 2
(CR848789) Zebrafish DNA sequence from clone DKEYP-114B4 in ... 50 0.13 1
(AL929184) Zebrafish DNA sequence from clone CH211-125N20. 50 0.13 1
(AC165218) Medicago truncatula chromosome 2 BAC clone mth2-4... 50 0.13 1
(CU695309) Brassica rapa subsp. pekinensis clone KBrH066L21,... 50 0.13 1
(CR853288) Zebrafish DNA sequence *** SEQUENCING CANCELLED *... 50 0.13 1
(CR556716) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 50 0.13 1
(AC222070) Bos taurus clone CH240-373G19, WORKING DRAFT SEQU... 50 0.13 1
(AC180385) Strongylocentrotus purpuratus clone R3-3113O23, W... 50 0.13 1
(AC171257) Bos taurus clone CH240-273M6, WORKING DRAFT SEQUE... 50 0.13 1
(AM652121) Entamoeba moshkovskii FIC GSS, clone mosh112b07.q1k. 50 0.13 1
(BH920636) odh75g09.g1 B.oleracea002 Brassica oleracea genom... 50 0.13 1
(EL587190) 65JKBNM0_T3_006_E12_16MAR2005_088 65JKBNM0 Brassi... 50 0.13 1
(EG982808) GLL094_D08_029 Cyamopsis tetragonoloba (L.) Taub ... 50 0.13 1
(EE549652) BNQA_UP_019_A08_18SEP2003_064 Brassica napus BNQA... 50 0.13 1
(EE530965) 46RDOAG_UP_011_G02_24SEP2004_004 O. Alba 46RDOAG ... 50 0.13 1
(EE460633) BNBS8DCT_UP_031_E06_17APR2005_040 Brassica napus ... 50 0.13 1
(EE452660) BNBS2DCT_UP_023_D07_12MAR2005_057 Brassica napus ... 50 0.13 1
(EE448994) 75ETGS60_UP_014_D05_05MAY2005_041 75ETGS60 Brassi... 50 0.13 1
(EE441414) 6ETGS6H_UP_027_H05_04FEB2005_033 Brassica napus 6... 50 0.13 1
(EE428182) 33ETGS36_UP_008_F07_17MAR2004_053 Brassica napus ... 50 0.13 1
(DY019481) 48RDOAM_UP_043_H04_15SEP2004_018 O. Alba 48RDOAM ... 50 0.13 1
(DY009742) 8RDBRH_UP_012_F04_12SEP2003_022 Brassica rapa - 8... 50 0.13 1
(DY000896) 62ETGS52_RP_013_G02_03JAN2005_004 Brassica napus ... 50 0.13 1
(DT550731) EST1061371 GH_TMO Gossypium hirsutum cDNA, mRNA s... 50 0.13 1
(DT550713) EST1061353 GH_TMO Gossypium hirsutum cDNA, mRNA s... 50 0.13 1
(DN794148) Pm_Admus_06E09_T3 Helene and Hannah Pecten maximu... 50 0.13 1
(AM061504) Brassica oleracea var. alboglabra EST, clone AAF... 50 0.13 1
(CO108603) GR__Eb0040I07.r GR__Eb Gossypium raimondii cDNA c... 50 0.13 1
(AL374661) Medicago truncatula EST MtBB07H05F1 : T3 end of c... 50 0.13 1
(CF069793) EST670514 MTUS Medicago truncatula cDNA clone MTU... 50 0.13 1
(CB895068) EST647860 HOGA Medicago truncatula cDNA clone HOG... 50 0.13 1
(CA920202) EST637920 MTUS Medicago truncatula cDNA clone MTU... 50 0.13 1
(AI730233) BNLGHi6413 Six-day Cotton fiber Gossypium hirsutu... 50 0.13 1
(BQ413860) GA__Ed0079F05r Gossypium arboreum 7-10 dpa fiber ... 50 0.13 1
(BQ405182) GA__Ed0079F05f Gossypium arboreum 7-10 dpa fiber ... 50 0.13 1
(BQ402737) GA__Ed0051C10r Gossypium arboreum 7-10 dpa fiber ... 50 0.13 1
(BQ402736) GA__Ed0051C10f Gossypium arboreum 7-10 dpa fiber ... 50 0.13 1
(BP953941) Euphorbia tirucalli mRNA, clone: ETC013B12, 5' end. 50 0.13 1
(BG583602) EST485354 GVN Medicago truncatula cDNA clone pGVN... 50 0.13 1
(BF635834) NF054A05DT1F1037 Drought Medicago truncatula cDNA... 50 0.13 1
(BE940886) EST420465 MGHG Medicago truncatula cDNA clone pMG... 50 0.13 1
(FF404625) CT0772 Cistus creticus trichome library, Clontech... 50 0.13 1
(EY473940) META002TF JCVI-MT3 Medicago truncatula cDNA 5', m... 50 0.13 1
(EY145409) CBTH9877.g1_I22.ab1:P Triphysaria pusilla root ti... 50 0.13 1
(EY145408) CBTH9877.b1_I22.ab1:P Triphysaria pusilla root ti... 50 0.13 1
(EY136060) CBTH5233.g1_A14.ab1:P Triphysaria pusilla root ti... 50 0.13 1
(EY136059) CBTH5233.b1_A14.ab1:P Triphysaria pusilla root ti... 50 0.13 1
(EY130821) CBTH2738.g1_C13.ab1:P Triphysaria pusilla root ti... 50 0.13 1
(EY130820) CBTH2738.b1_C13.ab1:P Triphysaria pusilla root ti... 50 0.13 1
(EX287569) 1575498_5_M24_084 PY06 Carica papaya cDNA, mRNA s... 50 0.13 1
(EX285113) 1572240_5_F06_027 PY06 Carica papaya cDNA, mRNA s... 50 0.13 1
(EX271248) 1451530_5_D16_062 PY06 Carica papaya cDNA, mRNA s... 50 0.13 1
(EX271097) 1451681_5_J23_088 PY06 Carica papaya cDNA, mRNA s... 50 0.13 1
(EX261059) 1441527_5_C21_093 PY06 Carica papaya cDNA, mRNA s... 50 0.13 1
(EX261044) 1441473_5_A15_064 PY06 Carica papaya cDNA, mRNA s... 50 0.13 1
(EX259861) 1440052_5_F10_043 PY06 Carica papaya cDNA, mRNA s... 50 0.13 1
(EX084501) BR069145 primary inflorescence cDNA library KBST ... 50 0.13 1
(EX034032) BR018676 callus cDNA library KBCG Brassica rapa s... 50 0.13 1
(EX027705) BR012349 callus cDNA library KBCG Brassica rapa s... 50 0.13 1
(EX027425) BR012069 callus cDNA library KBCG Brassica rapa s... 50 0.13 1
(EV259436) MTYDW06TF JCVI-MT1 Medicago truncatula cDNA 5', m... 50 0.13 1
(EV146390) 0212324 Brassica napus Very early anther Brassica... 50 0.13 1
(EV146161) 0212095 Brassica napus Very early anther Brassica... 50 0.13 1
(ES850760) UFL_685_27 Cotton fiber 0-10 day post anthesis Go... 50 0.13 1
(ES809314) UFL_286_95 Cotton fiber 0-10 day post anthesis Go... 50 0.13 1
(ES808079) UFL_307_69 Cotton fiber 0-10 day post anthesis Go... 50 0.13 1
(DX558619) GH_MBb0025F20r GH_MBb Gossypium hirsutum genomic ... 42 0.41 2
(AM489037) Vitis vinifera contig VV78X082512.3, whole genome... 46 0.44 2
(CR855260) Zebrafish DNA sequence from clone DKEY-151C10 in ... 48 0.50 1
(AC112153) Mus musculus BAC clone RP24-93G11 from chromosome... 48 0.50 1
(GN008040) Sequence 481 from Patent EP2014669. 48 0.50 1
(AP008123) Lotus japonicus genomic DNA, chromosome 4, clone:... 48 0.50 1
(EK388927) 1095469493441 Global-Ocean-Sampling_GS-31-01-01-1... 48 0.50 1
(CR153779) Forward strand read from insert in 3'HPRT inserti... 48 0.50 1
(CR080227) Forward strand read from insert in 3'HPRT inserti... 48 0.50 1
(CC306906) TAM32-7F14_EC1.1 TAM32 Gallus gallus genomic clon... 48 0.50 1
(DW513017) GH_TMIRS_168_H02_F Cotton Normalized Library dT p... 48 0.50 1
(CV182424) tai86f06.x1 Hydra EST UCI 5 ALP Hydra magnipapill... 48 0.50 1
(ES738874) MytUSCGMHMa4pTrueBlue11m06f1 Mytilus californianu... 48 0.50 1
(ES737095) MytUSCGM7pFLC-I 09p18f1 Mytilus californianus lib... 48 0.50 1
(ES736845) MytUSCGM5pFLC-I 09c09f1 Mytilus californianus lib... 48 0.50 1
(AE006394) Lactococcus lactis subsp. lactis IL1403 section 1... 48 0.50 1
(AC189963) Glycine tomentella clone gtd1-72e2, WORKING DRAFT... 38 0.90 5
(D83749) Bean yellow mosaic virus genomic RNA for polyprotei... 44 0.92 2
(FJ492961) Bean yellow mosaic virus isolate Fr, complete gen... 44 0.92 2
(AB079887) Bean yellow mosaic virus genomic RNA, complete ge... 44 0.92 2
(AB079886) Bean yellow mosaic virus genomic RNA, complete ge... 44 0.92 2
(CU019660) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 36 1.1 2
(CR855862) Zebrafish DNA sequence from clone DKEY-208O10 in ... 36 1.1 2
(AM443511) Vitis vinifera contig VV78X059386.8, whole genome... 34 1.1 2
(BX572646) Zebrafish DNA sequence from clone DKEY-245O11 in ... 46 2.0 1
(CU104722) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 46 2.0 1
(EH771645) CNSM4234.b1_C03.ab1 CNS(LMS) yellow starthistle C... 46 2.0 1
(EG981611) GLL083_G05_018 Cyamopsis tetragonoloba (L.) Taub ... 46 2.0 1
(EE151050) AMUFL-P01_C02 Adult Argas monolakensis salivary g... 46 2.0 1
(BW985592) Physa acuta cDNA, clone: Physa0373, 5' enriched P... 46 2.0 1
(BI270387) NF010E01FL1F1007 Developing flower Medicago trunc... 46 2.0 1
(CU855775) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 40 2.1 2
(CR382398) Plasmodium falciparum chromosome 6, complete sequ... 38 2.7 7
(AY192568) Bean yellow mosaic virus isolate GDD, complete ge... 42 3.4 2
(CU972491) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 38 3.6 5
(BX927397) Zebrafish DNA sequence from clone DKEY-87H7 in li... 34 3.8 2
(AC231348) Medicago truncatula clone mth2-143a10, WORKING DR... 32 3.9 2
(AC106715) Homo sapiens 3 BAC RP11-695J20 (Roswell Park Canc... 34 3.9 6
(AC174143) Medicago truncatula chromosome 8 clone mth2-144h4... 32 3.9 2
(AC135100) Medicago truncatula chromosome 8 clone mth2-17j9,... 32 3.9 2
(AL133547) Human DNA sequence from clone RP11-140C18 on chro... 40 4.8 3
(DU103456) JBnY022D19F Brassica napus BAC library JBnY Brass... 32 5.1 2
(CR848746) Zebrafish DNA sequence from clone CH211-269K10 in... 38 6.7 5
(AC010255) Homo sapiens chromosome 5 clone CTC-441N14, compl... 38 7.4 5
(AP000386) Arabidopsis thaliana genomic DNA, chromosome 3, P... 42 7.6 4
(AL935333) Zebrafish DNA sequence from clone CH211-198I18 in... 44 7.9 1
(AC161176) Mus musculus chromosome 5, clone RP24-295A5, comp... 44 7.9 1
(AC117812) Mus musculus chromosome 5, clone RP24-571E8, comp... 44 7.9 1
(DQ273270) Allium cepa clone 1G-12-89, complete sequence. 44 7.9 1
(AP001307) Arabidopsis thaliana genomic DNA, chromosome 3, P... 44 7.9 1
(AM398270) Mylia taylorii chloroplast rps4 gene for small ri... 44 7.9 1
(AC107304) Homo sapiens 3 BAC RP11-598F17 (Roswell Park Canc... 44 7.9 1
(AC128241) Rattus norvegicus clone CH230-39D23, WORKING DRAF... 44 7.9 1
(AC097122) Rattus norvegicus clone CH230-58N18, WORKING DRAF... 44 7.9 1
(AC060756) Homo sapiens chromosome 9 clone RP11-598F17 map 9... 44 7.9 1
(CR925834) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 44 7.9 1
(AC232709) Solanum tuberosum chromosome 6 clone RHPOTKEY164L... 44 7.9 1
(AC178336) Strongylocentrotus purpuratus clone R3-1114G16, W... 44 7.9 1
(AC173372) Strongylocentrotus purpuratus clone R3-1040C10, W... 44 7.9 1
(AC022369) Mus musculus strain C57BL6/J chromosome 5 clone R... 44 7.9 1
(AY815452) Schistosoma japonicum SJCHGC05786 protein mRNA, c... 44 7.9 1
(AQ234529) HS_2052_B2_F11_T7 CIT Approved Human Genomic Sper... 44 7.9 1
(EJ190252) 1092344186683 Global-Ocean-Sampling_GS-27-01-01-1... 44 7.9 1
(EI963791) SB_BBc115-D09.R SB_BBc Sorghum bicolor genomic 3'... 44 7.9 1
(ED703644) GM_WBb0047G21.f GM_WBb Glycine max genomic clone ... 44 7.9 1
(CZ162484) OR_ABa0004C09.f OR_ABa Oryza ridleyi genomic clon... 44 7.9 1
(B85263) RPCI11-30P3.TP RPCI-11 Homo sapiens genomic clone R... 44 7.9 1
(BH722969) BOMNE15TR BO_2_3_KB Brassica oleracea genomic clo... 44 7.9 1
(DT612770) ACAG-aaa16c09.g1 Hydra_EST_UCI-9 Hydra magnipapil... 44 7.9 1
(DT511988) WS02418.B21_A21 PTxD-ICC-N-A-14 Populus trichocar... 44 7.9 1
(DT507360) WS02418.BR_A21 PTxD-ICC-N-A-14 Populus trichocarp... 44 7.9 1
(AU265776) Dictyostelium discoideum vegetative cDNA clone:VS... 44 7.9 1
(CX859831) SJF2_CE_B01.T3 SJA Schistosoma japonicum cDNA, mR... 44 7.9 1
(CV697939) SJS_034_92.T3 SJS Schistosoma japonicum cDNA, mRN... 44 7.9 1
(CV694142) SJS_010_88.T3 SJS Schistosoma japonicum cDNA, mRN... 44 7.9 1
(CV255334) WS02412.B21_L15 PTxD-ICC-N-A-14 Populus trichocar... 44 7.9 1
(CV182657) tai86f06.y1 Hydra EST UCI 5 ALP Hydra magnipapill... 44 7.9 1
(CV181729) tai77c07.y1 Hydra EST UCI 5 ALP Hydra magnipapill... 44 7.9 1
(CU549856) Theobroma cacao, mRNA sequence (KZ0AAS8YJ06FM1). 44 7.9 1
(CU471136) Theobroma cacao, mRNA sequence (KZ0ACI3YF11FM1). 44 7.9 1
(CN625244) tae67f04.y1 Hydra EST Darmstadt I Hydra magnipapi... 44 7.9 1
(CN624917) tae67f04.x1 Hydra EST Darmstadt I Hydra magnipapi... 44 7.9 1
(CN557498) tae50f07.y1 Hydra EST Darmstadt I Hydra magnipapi... 44 7.9 1
(CN557252) tae50f07.x1 Hydra EST Darmstadt I Hydra magnipapi... 44 7.9 1
(CF601429) tac37c11.y1 Hydra EST -IV Hydra magnipapillata cD... 44 7.9 1
(CB414043) ScaE_2818 Bay scallop Uni-ZAP XR Expression Libra... 44 7.9 1
(BU780635) SJEFZD06 SJE Schistosoma japonicum cDNA similar t... 44 7.9 1
(BU725646) SJMCIC11 SJM Schistosoma japonicum cDNA similar t... 44 7.9 1
(BP515617) Hydra magnipapillata cDNA, clone:hmp_11776. 44 7.9 1
(BP509825) Hydra magnipapillata cDNA, clone:hmp_04929. 44 7.9 1
(GE910544) 9559023_A04.ab1_c Past_norm2007 Porites astreoide... 44 7.9 1
(FG197874) AGN_PNL226cf1_f5.trimmed.seq AGN_PNL Nicotiana ta... 44 7.9 1
(FE595884) CAXG9149.rev Amphioxus Branchiostoma floridae unp... 44 7.9 1
(CP001184) Ureaplasma urealyticum serovar 10 str. ATCC 33699... 44 7.9 1
(CP000551) Prochlorococcus marinus str. AS9601, complete gen... 44 7.9 1
(AM902716) Bordetella petrii strain DSM 12804, complete genome. 44 7.9 1
(AE002115) Ureaplasma parvum serovar 3 str. ATCC 700970 sect... 44 7.9 1
(AC172257) Bos taurus clone CH240-525G21, WORKING DRAFT SEQU... 42 8.6 3
(EU169655) Petrophile canescens maturase K (matK) gene, comp... 38 9.9 2

>(C90831) Dictyostelium discoideum slug cDNA, clone SSJ203.
Length = 749

Score = 521 bits (263), Expect(2) = 0.0
Identities = 272/275 (98%)
Strand = Plus / Plus


Query: 366 aaataaatctaatgaatcattttcagtacaatatgaactttcagaaggtgtttactcttc 425
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 aaataaatctaatgaatcattttcagtacaatatgaactttcagaaggtgtttactcttc 410


Query: 426 agcacaagtaaatgaaccaaaatcaatttatttatggttaggtgcaaatgtaatgttgga 485
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 agcacaagtaaatgacccaaaatcaatttatttatggttaggtgcaaatgtaatgttgga 470


Query: 486 atattcatttgaagaagcaagagaggtattaagaaagaataaagatacagtcgatcgtca 545
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 atattcatttgaagaagcaagagaggtattaagaaagaataaagatacagtcgatcgtca 530


Query: 546 acttagtgagagcattcaagatttaggttttgtaaaggatcaaatcactacaactgatgt 605
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 531 acttagtgagagcattcaagatttaggttttgtaaaggatcaaatcactacaactgatgt 590


Query: 606 taacgtttcacgtgtttacaattatgatatcattc 640
||| ||||||||||||||||||||||||||||||
Sbjct: 591 taaactttcacgtgtttacaattatgatatcattc 625

Score = 507 bits (256), Expect(2) = 0.0
Identities = 268/271 (98%)
Strand = Plus / Plus


Query: 97 tggccacaattacaaatgcagaccccatctaaaatattcatttggacccagttttnaaaa 156
||||||| ||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 83 tggccaccatttccaatgcagaccccatctaaaatattcatttggacccagttttnaaaa 142


Query: 157 acagcacccaatatttccactggtcacattcaattcccattgtgaagaatctgttaaaga 216
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143 acagcacccaatatttccactggtcacattcaattcccattgtgaagaatctgttaaaga 202


Query: 217 ttacagattgttgaaaatgttttcaaacaattacaaggagcatatcaaacatataaattt 276
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 ttacagattgttgaaaatgttttcaaacaattacaaggagcatatcaaacatataaattt 262


Query: 277 tttgaatcaaaactttcaaataatatttcactgttaactccaagatcaaaacaattacaa 336
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 tttgaatcaaaactttcaaataatatttcactgttaactccaagatcaaaacaattacaa 322


Query: 337 gaatctttagatattgtcgatcatgttgaaa 367
|||||||||||||||||||||||||||||||
Sbjct: 323 gaatctttagatattgtcgatcatgttgaaa 353

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 102105510
Number of Hits to DB: 849,224,320
Number of extensions: 53669726
Number of successful extensions: 4549203
Number of sequences better than 10.0: 179
Length of query: 773
Length of database: 101,790,757,118
Length adjustment: 24
Effective length of query: 749
Effective length of database: 99,340,224,878
Effective search space: 74405828433622
Effective search space used: 74405828433622
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)

protein update 2009. 7.30
Homology vs Protein
Query= Contig-U04465-1 (Contig-U04465-1Q) /CSM_Contig/Contig-U04465-1Q.Seq.d
(773 letters)

Database: nrp_A
3,268,448 sequences; 1,061,185,681 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

CP001333_264(CP001333|pid:none) Micromonas sp. RCC299 chromosome... 114 5e-24
BC054252_1(BC054252|pid:none) Xenopus laevis von Hippel-Lindau b... 112 2e-23
EF087700_1(EF087700|pid:none) Picea sitchensis clone WS02736_B07... 111 2e-23
BC092334_1(BC092334|pid:none) Xenopus laevis hypothetical protei... 111 3e-23
AK301646_1(AK301646|pid:none) Homo sapiens cDNA FLJ59776 complet... 110 7e-23
AY890868_1(AY890868|pid:none) Synthetic construct Homo sapiens c... 110 7e-23
U56833_1(U56833|pid:none) Human VHL binding protein-1 (VBP-1) mR... 110 7e-23
BC132169_1(BC132169|pid:none) Mus musculus von Hippel-Lindau bin... 110 7e-23
BT047875_1(BT047875|pid:none) Salmo salar clone ssal-evf-520-165... 109 9e-23
(P61758) RecName: Full=Prefoldin subunit 3; AltName: Full=Von Hi... 109 1e-22
CR954212_32(CR954212|pid:none) Ostreococcus tauri strain OTTH059... 108 2e-22
BX908789_18(BX908789|pid:none) Neurospora crassa DNA linkage gro... 106 9e-22
(Q2TBX2) RecName: Full=Prefoldin subunit 3; AltName: Full=Von Hi... 106 9e-22
AK059971_1(AK059971|pid:none) Oryza sativa Japonica Group cDNA c... 105 1e-21
BC095370_1(BC095370|pid:none) Danio rerio von Hippel-Lindau bind... 105 1e-21
(O18054) RecName: Full=Probable prefoldin subunit 3; &T24621(T2... 105 2e-21
BT039206_1(BT039206|pid:none) Zea mays full-length cDNA clone ZM... 104 3e-21
EU964876_1(EU964876|pid:none) Zea mays clone 282278 prefoldin su... 104 3e-21
EU965462_1(EU965462|pid:none) Zea mays clone 286197 prefoldin su... 104 4e-21
AM502244_135(AM502244|pid:none) Leishmania infantum chromosome 26. 103 8e-21
(P57741) RecName: Full=Probable prefoldin subunit 3; &AB023033_... 102 1e-20
AM494963_140(AM494963|pid:none) Leishmania braziliensis chromoso... 102 1e-20
CT005265_137(CT005265|pid:none) Leishmania major strain Friedlin... 100 4e-20
BT076159_1(BT076159|pid:none) Caligus rogercresseyi clone crog-e... 99 2e-19
EF541362_1(EF541362|pid:none) Lygus lineolaris clone A68 putativ... 99 2e-19
BT077241_1(BT077241|pid:none) Caligus rogercresseyi clone crog-e... 98 3e-19
FM992690_478(FM992690|pid:none) Candida dubliniensis CD36 chromo... 97 7e-19
DQ443340_1(DQ443340|pid:none) Bombyx mori prefoldin subunit 3 mR... 96 2e-18
BT072072_1(BT072072|pid:none) Salmo salar clone ssal-rgf-510-135... 95 2e-18
AB174449_1(AB174449|pid:none) Macaca fascicularis brain cDNA clo... 95 3e-18
CR382138_728(CR382138|pid:none) Debaryomyces hansenii strain CBS... 94 4e-18
FN392319_1132(FN392319|pid:none) Pichia pastoris GS115 chromosom... 94 5e-18
EU401707_1(EU401707|pid:none) Elsinoe fawcettii ESC prefoldin pr... 93 8e-18
AP007171_428(AP007171|pid:none) Aspergillus oryzae RIB40 genomic... 93 1e-17
AM270135_17(AM270135|pid:none) Aspergillus niger contig An07c018... 93 1e-17
CR382128_333(CR382128|pid:none) Yarrowia lipolytica strain CLIB1... 91 4e-17
AE014297_1328(AE014297|pid:none) Drosophila melanogaster chromos... 90 9e-17
AY815452_1(AY815452|pid:none) Schistosoma japonicum SJCHGC05786 ... 89 1e-16
FN357333_9(FN357333|pid:none) Schistosoma mansoni genome sequenc... 87 5e-16
AC159458_42(AC159458|pid:none) Trypanosoma brucei chromosome 7 c... 87 8e-16
AM920427_1620(AM920427|pid:none) Penicillium chrysogenum Wiscons... 86 1e-15
AE016818_552(AE016818|pid:none) Ashbya gossypii (= Eremothecium ... 84 7e-15
CU928174_232(CU928174|pid:none) Zygosaccharomyces rouxii strain ... 81 3e-14
BC157499_1(BC157499|pid:none) Xenopus laevis cDNA clone MGC:1801... 81 4e-14
CR716158_4(CR716158|pid:none) P. carinii cosmid 18A9. 78 3e-13
CR380957_44(CR380957|pid:none) Candida glabrata strain CBS138 ch... 78 3e-13
AE017344_108(AE017344|pid:none) Cryptococcus neoformans var. neo... 78 4e-13
AL954129_5(AL954129|pid:none) Zebrafish DNA sequence from clone ... 65 2e-09
AK167742_1(AK167742|pid:none) Mus musculus CRL-1722 L5178Y-R cDN... 49 2e-04
CP001365_815(CP001365|pid:none) Halorubrum lacusprofundi ATCC 49... 42 0.029
(A1RXA9) RecName: Full=Prefoldin subunit alpha; AltName: Full=Gi... 40 0.11
CT005248_94(CT005248|pid:none) Leishmania major strain Friedlin,... 37 0.92
CP000552_899(CP000552|pid:none) Prochlorococcus marinus str. MIT... 36 1.6
BX548174_935(BX548174|pid:none) Prochlorococcus marinus MED4 com... 35 2.1
AE014188_382(AE014188|pid:none) Plasmodium falciparum 3D7 chromo... 35 2.1
CP001037_4595(CP001037|pid:none) Nostoc punctiforme PCC 73102, c... 35 3.5
AE017198_1308(AE017198|pid:none) Lactobacillus johnsonii NCC 533... 35 3.5
Z25750_1(Z25750|pid:none) S.cerevisiae of JNM1 gene. 35 3.5
BX571876_74(BX571876|pid:none) Leptospira biflexa temperate bact... 35 3.5
(P36224) RecName: Full=Nuclear migration protein JNM1; &S47455(... 35 3.5
CU928173_484(CU928173|pid:none) Zygosaccharomyces rouxii strain ... 35 3.5
BA000033_1117(BA000033|pid:none) Staphylococcus aureus subsp. au... 34 4.6
(A2STI6) RecName: Full=Prefoldin subunit alpha; AltName: Full=Gi... 34 4.6
CP000679_1519(CP000679|pid:none) Caldicellulosiruptor saccharoly... 34 6.0
AF447813_12(AF447813|pid:none) Staphylococcus aureus plasmid pRJ... 34 6.0
AP004840_19(AP004840|pid:none) Oryza sativa Japonica Group genom... 33 7.8
AE015927_2097(AE015927|pid:none) Clostridium tetani E88, complet... 33 7.8
AJ131892_1(AJ131892|pid:none) Gallus gallus mRNA for Hyperion pr... 33 7.8
CP000048_494(CP000048|pid:none) Borrelia hermsii DAH, complete g... 33 7.8
AE016819_519(AE016819|pid:none) Ashbya gossypii (= Eremothecium ... 33 7.8
(Q9LY71) RecName: Full=Cytokinin dehydrogenase 6; EC=1.... 33 7.8

>CP001333_264(CP001333|pid:none) Micromonas sp. RCC299 chromosome
15, complete sequence.
Length = 168

Score = 114 bits (284), Expect = 5e-24
Identities = 55/145 (37%), Positives = 92/145 (63%), Gaps = 2/145 (1%)
Frame = +1

Query: 229 ENVFKQLQGAYQTYKFFESKLSNNISLLTPRSKQLQESLDIVDHVENKS--NESFSVQYE 402
E ++LQ +Q YK E L N L + +++ +LD V ++ KS + + YE
Sbjct: 19 EQTMRELQTLFQQYKQIEQGLQQNRIRLGNKLPEIKRALDTVKLLKEKSASGDELDMDYE 78

Query: 403 LSEGVYSSAQVNEPKSIYLWLGANVMLEYSFEEAREVLRKNKDTVDRQLSESIQDLGFVK 582
L++ V++ A+V + +S+YLWLGANVMLEYS ++A +L+ N + R L+ + DL FVK
Sbjct: 79 LTDSVFAKAKVKDAQSVYLWLGANVMLEYSLDDAENLLQTNHENCARNLATNKSDLAFVK 138

Query: 583 DQITTTDVNVSRVYNYDIIQKRKLK 657
D +T T+V+++RVYN+D+ +++ K
Sbjct: 139 DNVTITEVSIARVYNWDVKRRKAAK 163

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3268448
Number of Hits to DB: 968,521,940
Number of extensions: 16707073
Number of successful extensions: 39657
Number of sequences better than 10.0: 71
Number of HSP's gapped: 39612
Number of HSP's successfully gapped: 71
Length of query: 257
Length of database: 1,061,185,681
Length adjustment: 126
Effective length of query: 131
Effective length of database: 649,361,233
Effective search space: 85066321523
Effective search space used: 85066321523
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 31 (16.5 bits)

PSORT

psg: 0.72 gvh: 0.34 alm: 0.51 top: 0.53 tms: 0.00 mit: 0.24 mip: 0.07
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

48.0 %: cytoplasmic
28.0 %: nuclear
16.0 %: mitochondrial
4.0 %: cytoskeletal
4.0 %: peroxisomal

>> prediction for Contig-U04465-1 is cyt

VS (DIR, S) 3
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 3
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0