Contig-U04465-1 |
Contig ID |
Contig-U04465-1 |
Contig update |
2002. 9.13 |
Contig sequence |
|
Gap |
no gap |
Contig length |
773 |
Chromosome number (1..6, M) |
4 |
Chromosome length |
5430582 |
Start point |
4504522 |
End point |
4503798 |
Strand (PLUS/MINUS) |
MINUS |
Number of clones |
6 |
Number of EST |
7 |
Link to clone list |
U04465 |
List of clone(s) |
|
Translated Amino Acid sequence |
|
Translated Amino Acid sequence (All Frames) |
|
own update |
2004. 6.10 |
Homology vs CSM-cDNA |
|
dna update |
2009. 6.21 |
Homology vs DNA |
Query= Contig-U04465-1 (Contig-U04465-1Q) /CSM_Contig/Contig-U04465-1Q.Seq.d (773 letters)
Database: ddbj_A 102,105,510 sequences; 101,790,757,118 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value N
(C90831) Dictyostelium discoideum slug cDNA, clone SSJ203. 521 0.0 2 (C84716) Dictyostelium discoideum slug cDNA, clone SSE728. 793 0.0 2 (AU263358) Dictyostelium discoideum vegetative cDNA clone:VS... 793 0.0 1 (AU263355) Dictyostelium discoideum vegetative cDNA clone:VS... 793 0.0 1 (AU261747) Dictyostelium discoideum vegetative cDNA clone:VS... 617 e-172 1 (AU037017) Dictyostelium discoideum slug cDNA, clone SSA756. 539 e-149 1 (AU072753) Dictyostelium discoideum slug cDNA, clone SSA756. 111 1e-32 3 (CP000942) Ureaplasma parvum serovar 3 str. ATCC 27815, comp... 44 2e-04 10 (AF222894) Ureaplasma parvum serovar 3 str. ATCC 700970, com... 44 2e-04 10 (FL503148) vfase1ng_UP_003_D07_06MAY2004_057 Vicia faba cv. ... 50 0.021 2 (EW766934) ST020031A20F07 Normalized and subtracted western ... 52 0.032 1 (DT613944) ACAG-aaa43e04.g1 Hydra_EST_UCI-9 Hydra magnipapil... 38 0.099 2 (CR848789) Zebrafish DNA sequence from clone DKEYP-114B4 in ... 50 0.13 1 (AL929184) Zebrafish DNA sequence from clone CH211-125N20. 50 0.13 1 (AC165218) Medicago truncatula chromosome 2 BAC clone mth2-4... 50 0.13 1 (CU695309) Brassica rapa subsp. pekinensis clone KBrH066L21,... 50 0.13 1 (CR853288) Zebrafish DNA sequence *** SEQUENCING CANCELLED *... 50 0.13 1 (CR556716) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 50 0.13 1 (AC222070) Bos taurus clone CH240-373G19, WORKING DRAFT SEQU... 50 0.13 1 (AC180385) Strongylocentrotus purpuratus clone R3-3113O23, W... 50 0.13 1 (AC171257) Bos taurus clone CH240-273M6, WORKING DRAFT SEQUE... 50 0.13 1 (AM652121) Entamoeba moshkovskii FIC GSS, clone mosh112b07.q1k. 50 0.13 1 (BH920636) odh75g09.g1 B.oleracea002 Brassica oleracea genom... 50 0.13 1 (EL587190) 65JKBNM0_T3_006_E12_16MAR2005_088 65JKBNM0 Brassi... 50 0.13 1 (EG982808) GLL094_D08_029 Cyamopsis tetragonoloba (L.) Taub ... 50 0.13 1 (EE549652) BNQA_UP_019_A08_18SEP2003_064 Brassica napus BNQA... 50 0.13 1 (EE530965) 46RDOAG_UP_011_G02_24SEP2004_004 O. Alba 46RDOAG ... 50 0.13 1 (EE460633) BNBS8DCT_UP_031_E06_17APR2005_040 Brassica napus ... 50 0.13 1 (EE452660) BNBS2DCT_UP_023_D07_12MAR2005_057 Brassica napus ... 50 0.13 1 (EE448994) 75ETGS60_UP_014_D05_05MAY2005_041 75ETGS60 Brassi... 50 0.13 1 (EE441414) 6ETGS6H_UP_027_H05_04FEB2005_033 Brassica napus 6... 50 0.13 1 (EE428182) 33ETGS36_UP_008_F07_17MAR2004_053 Brassica napus ... 50 0.13 1 (DY019481) 48RDOAM_UP_043_H04_15SEP2004_018 O. Alba 48RDOAM ... 50 0.13 1 (DY009742) 8RDBRH_UP_012_F04_12SEP2003_022 Brassica rapa - 8... 50 0.13 1 (DY000896) 62ETGS52_RP_013_G02_03JAN2005_004 Brassica napus ... 50 0.13 1 (DT550731) EST1061371 GH_TMO Gossypium hirsutum cDNA, mRNA s... 50 0.13 1 (DT550713) EST1061353 GH_TMO Gossypium hirsutum cDNA, mRNA s... 50 0.13 1 (DN794148) Pm_Admus_06E09_T3 Helene and Hannah Pecten maximu... 50 0.13 1 (AM061504) Brassica oleracea var. alboglabra EST, clone AAF... 50 0.13 1 (CO108603) GR__Eb0040I07.r GR__Eb Gossypium raimondii cDNA c... 50 0.13 1 (AL374661) Medicago truncatula EST MtBB07H05F1 : T3 end of c... 50 0.13 1 (CF069793) EST670514 MTUS Medicago truncatula cDNA clone MTU... 50 0.13 1 (CB895068) EST647860 HOGA Medicago truncatula cDNA clone HOG... 50 0.13 1 (CA920202) EST637920 MTUS Medicago truncatula cDNA clone MTU... 50 0.13 1 (AI730233) BNLGHi6413 Six-day Cotton fiber Gossypium hirsutu... 50 0.13 1 (BQ413860) GA__Ed0079F05r Gossypium arboreum 7-10 dpa fiber ... 50 0.13 1 (BQ405182) GA__Ed0079F05f Gossypium arboreum 7-10 dpa fiber ... 50 0.13 1 (BQ402737) GA__Ed0051C10r Gossypium arboreum 7-10 dpa fiber ... 50 0.13 1 (BQ402736) GA__Ed0051C10f Gossypium arboreum 7-10 dpa fiber ... 50 0.13 1 (BP953941) Euphorbia tirucalli mRNA, clone: ETC013B12, 5' end. 50 0.13 1 (BG583602) EST485354 GVN Medicago truncatula cDNA clone pGVN... 50 0.13 1 (BF635834) NF054A05DT1F1037 Drought Medicago truncatula cDNA... 50 0.13 1 (BE940886) EST420465 MGHG Medicago truncatula cDNA clone pMG... 50 0.13 1 (FF404625) CT0772 Cistus creticus trichome library, Clontech... 50 0.13 1 (EY473940) META002TF JCVI-MT3 Medicago truncatula cDNA 5', m... 50 0.13 1 (EY145409) CBTH9877.g1_I22.ab1:P Triphysaria pusilla root ti... 50 0.13 1 (EY145408) CBTH9877.b1_I22.ab1:P Triphysaria pusilla root ti... 50 0.13 1 (EY136060) CBTH5233.g1_A14.ab1:P Triphysaria pusilla root ti... 50 0.13 1 (EY136059) CBTH5233.b1_A14.ab1:P Triphysaria pusilla root ti... 50 0.13 1 (EY130821) CBTH2738.g1_C13.ab1:P Triphysaria pusilla root ti... 50 0.13 1 (EY130820) CBTH2738.b1_C13.ab1:P Triphysaria pusilla root ti... 50 0.13 1 (EX287569) 1575498_5_M24_084 PY06 Carica papaya cDNA, mRNA s... 50 0.13 1 (EX285113) 1572240_5_F06_027 PY06 Carica papaya cDNA, mRNA s... 50 0.13 1 (EX271248) 1451530_5_D16_062 PY06 Carica papaya cDNA, mRNA s... 50 0.13 1 (EX271097) 1451681_5_J23_088 PY06 Carica papaya cDNA, mRNA s... 50 0.13 1 (EX261059) 1441527_5_C21_093 PY06 Carica papaya cDNA, mRNA s... 50 0.13 1 (EX261044) 1441473_5_A15_064 PY06 Carica papaya cDNA, mRNA s... 50 0.13 1 (EX259861) 1440052_5_F10_043 PY06 Carica papaya cDNA, mRNA s... 50 0.13 1 (EX084501) BR069145 primary inflorescence cDNA library KBST ... 50 0.13 1 (EX034032) BR018676 callus cDNA library KBCG Brassica rapa s... 50 0.13 1 (EX027705) BR012349 callus cDNA library KBCG Brassica rapa s... 50 0.13 1 (EX027425) BR012069 callus cDNA library KBCG Brassica rapa s... 50 0.13 1 (EV259436) MTYDW06TF JCVI-MT1 Medicago truncatula cDNA 5', m... 50 0.13 1 (EV146390) 0212324 Brassica napus Very early anther Brassica... 50 0.13 1 (EV146161) 0212095 Brassica napus Very early anther Brassica... 50 0.13 1 (ES850760) UFL_685_27 Cotton fiber 0-10 day post anthesis Go... 50 0.13 1 (ES809314) UFL_286_95 Cotton fiber 0-10 day post anthesis Go... 50 0.13 1 (ES808079) UFL_307_69 Cotton fiber 0-10 day post anthesis Go... 50 0.13 1 (DX558619) GH_MBb0025F20r GH_MBb Gossypium hirsutum genomic ... 42 0.41 2 (AM489037) Vitis vinifera contig VV78X082512.3, whole genome... 46 0.44 2 (CR855260) Zebrafish DNA sequence from clone DKEY-151C10 in ... 48 0.50 1 (AC112153) Mus musculus BAC clone RP24-93G11 from chromosome... 48 0.50 1 (GN008040) Sequence 481 from Patent EP2014669. 48 0.50 1 (AP008123) Lotus japonicus genomic DNA, chromosome 4, clone:... 48 0.50 1 (EK388927) 1095469493441 Global-Ocean-Sampling_GS-31-01-01-1... 48 0.50 1 (CR153779) Forward strand read from insert in 3'HPRT inserti... 48 0.50 1 (CR080227) Forward strand read from insert in 3'HPRT inserti... 48 0.50 1 (CC306906) TAM32-7F14_EC1.1 TAM32 Gallus gallus genomic clon... 48 0.50 1 (DW513017) GH_TMIRS_168_H02_F Cotton Normalized Library dT p... 48 0.50 1 (CV182424) tai86f06.x1 Hydra EST UCI 5 ALP Hydra magnipapill... 48 0.50 1 (ES738874) MytUSCGMHMa4pTrueBlue11m06f1 Mytilus californianu... 48 0.50 1 (ES737095) MytUSCGM7pFLC-I 09p18f1 Mytilus californianus lib... 48 0.50 1 (ES736845) MytUSCGM5pFLC-I 09c09f1 Mytilus californianus lib... 48 0.50 1 (AE006394) Lactococcus lactis subsp. lactis IL1403 section 1... 48 0.50 1 (AC189963) Glycine tomentella clone gtd1-72e2, WORKING DRAFT... 38 0.90 5 (D83749) Bean yellow mosaic virus genomic RNA for polyprotei... 44 0.92 2 (FJ492961) Bean yellow mosaic virus isolate Fr, complete gen... 44 0.92 2 (AB079887) Bean yellow mosaic virus genomic RNA, complete ge... 44 0.92 2 (AB079886) Bean yellow mosaic virus genomic RNA, complete ge... 44 0.92 2 (CU019660) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 36 1.1 2 (CR855862) Zebrafish DNA sequence from clone DKEY-208O10 in ... 36 1.1 2 (AM443511) Vitis vinifera contig VV78X059386.8, whole genome... 34 1.1 2 (BX572646) Zebrafish DNA sequence from clone DKEY-245O11 in ... 46 2.0 1 (CU104722) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 46 2.0 1 (EH771645) CNSM4234.b1_C03.ab1 CNS(LMS) yellow starthistle C... 46 2.0 1 (EG981611) GLL083_G05_018 Cyamopsis tetragonoloba (L.) Taub ... 46 2.0 1 (EE151050) AMUFL-P01_C02 Adult Argas monolakensis salivary g... 46 2.0 1 (BW985592) Physa acuta cDNA, clone: Physa0373, 5' enriched P... 46 2.0 1 (BI270387) NF010E01FL1F1007 Developing flower Medicago trunc... 46 2.0 1 (CU855775) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 40 2.1 2 (CR382398) Plasmodium falciparum chromosome 6, complete sequ... 38 2.7 7 (AY192568) Bean yellow mosaic virus isolate GDD, complete ge... 42 3.4 2 (CU972491) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 38 3.6 5 (BX927397) Zebrafish DNA sequence from clone DKEY-87H7 in li... 34 3.8 2 (AC231348) Medicago truncatula clone mth2-143a10, WORKING DR... 32 3.9 2 (AC106715) Homo sapiens 3 BAC RP11-695J20 (Roswell Park Canc... 34 3.9 6 (AC174143) Medicago truncatula chromosome 8 clone mth2-144h4... 32 3.9 2 (AC135100) Medicago truncatula chromosome 8 clone mth2-17j9,... 32 3.9 2 (AL133547) Human DNA sequence from clone RP11-140C18 on chro... 40 4.8 3 (DU103456) JBnY022D19F Brassica napus BAC library JBnY Brass... 32 5.1 2 (CR848746) Zebrafish DNA sequence from clone CH211-269K10 in... 38 6.7 5 (AC010255) Homo sapiens chromosome 5 clone CTC-441N14, compl... 38 7.4 5 (AP000386) Arabidopsis thaliana genomic DNA, chromosome 3, P... 42 7.6 4 (AL935333) Zebrafish DNA sequence from clone CH211-198I18 in... 44 7.9 1 (AC161176) Mus musculus chromosome 5, clone RP24-295A5, comp... 44 7.9 1 (AC117812) Mus musculus chromosome 5, clone RP24-571E8, comp... 44 7.9 1 (DQ273270) Allium cepa clone 1G-12-89, complete sequence. 44 7.9 1 (AP001307) Arabidopsis thaliana genomic DNA, chromosome 3, P... 44 7.9 1 (AM398270) Mylia taylorii chloroplast rps4 gene for small ri... 44 7.9 1 (AC107304) Homo sapiens 3 BAC RP11-598F17 (Roswell Park Canc... 44 7.9 1 (AC128241) Rattus norvegicus clone CH230-39D23, WORKING DRAF... 44 7.9 1 (AC097122) Rattus norvegicus clone CH230-58N18, WORKING DRAF... 44 7.9 1 (AC060756) Homo sapiens chromosome 9 clone RP11-598F17 map 9... 44 7.9 1 (CR925834) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 44 7.9 1 (AC232709) Solanum tuberosum chromosome 6 clone RHPOTKEY164L... 44 7.9 1 (AC178336) Strongylocentrotus purpuratus clone R3-1114G16, W... 44 7.9 1 (AC173372) Strongylocentrotus purpuratus clone R3-1040C10, W... 44 7.9 1 (AC022369) Mus musculus strain C57BL6/J chromosome 5 clone R... 44 7.9 1 (AY815452) Schistosoma japonicum SJCHGC05786 protein mRNA, c... 44 7.9 1 (AQ234529) HS_2052_B2_F11_T7 CIT Approved Human Genomic Sper... 44 7.9 1 (EJ190252) 1092344186683 Global-Ocean-Sampling_GS-27-01-01-1... 44 7.9 1 (EI963791) SB_BBc115-D09.R SB_BBc Sorghum bicolor genomic 3'... 44 7.9 1 (ED703644) GM_WBb0047G21.f GM_WBb Glycine max genomic clone ... 44 7.9 1 (CZ162484) OR_ABa0004C09.f OR_ABa Oryza ridleyi genomic clon... 44 7.9 1 (B85263) RPCI11-30P3.TP RPCI-11 Homo sapiens genomic clone R... 44 7.9 1 (BH722969) BOMNE15TR BO_2_3_KB Brassica oleracea genomic clo... 44 7.9 1 (DT612770) ACAG-aaa16c09.g1 Hydra_EST_UCI-9 Hydra magnipapil... 44 7.9 1 (DT511988) WS02418.B21_A21 PTxD-ICC-N-A-14 Populus trichocar... 44 7.9 1 (DT507360) WS02418.BR_A21 PTxD-ICC-N-A-14 Populus trichocarp... 44 7.9 1 (AU265776) Dictyostelium discoideum vegetative cDNA clone:VS... 44 7.9 1 (CX859831) SJF2_CE_B01.T3 SJA Schistosoma japonicum cDNA, mR... 44 7.9 1 (CV697939) SJS_034_92.T3 SJS Schistosoma japonicum cDNA, mRN... 44 7.9 1 (CV694142) SJS_010_88.T3 SJS Schistosoma japonicum cDNA, mRN... 44 7.9 1 (CV255334) WS02412.B21_L15 PTxD-ICC-N-A-14 Populus trichocar... 44 7.9 1 (CV182657) tai86f06.y1 Hydra EST UCI 5 ALP Hydra magnipapill... 44 7.9 1 (CV181729) tai77c07.y1 Hydra EST UCI 5 ALP Hydra magnipapill... 44 7.9 1 (CU549856) Theobroma cacao, mRNA sequence (KZ0AAS8YJ06FM1). 44 7.9 1 (CU471136) Theobroma cacao, mRNA sequence (KZ0ACI3YF11FM1). 44 7.9 1 (CN625244) tae67f04.y1 Hydra EST Darmstadt I Hydra magnipapi... 44 7.9 1 (CN624917) tae67f04.x1 Hydra EST Darmstadt I Hydra magnipapi... 44 7.9 1 (CN557498) tae50f07.y1 Hydra EST Darmstadt I Hydra magnipapi... 44 7.9 1 (CN557252) tae50f07.x1 Hydra EST Darmstadt I Hydra magnipapi... 44 7.9 1 (CF601429) tac37c11.y1 Hydra EST -IV Hydra magnipapillata cD... 44 7.9 1 (CB414043) ScaE_2818 Bay scallop Uni-ZAP XR Expression Libra... 44 7.9 1 (BU780635) SJEFZD06 SJE Schistosoma japonicum cDNA similar t... 44 7.9 1 (BU725646) SJMCIC11 SJM Schistosoma japonicum cDNA similar t... 44 7.9 1 (BP515617) Hydra magnipapillata cDNA, clone:hmp_11776. 44 7.9 1 (BP509825) Hydra magnipapillata cDNA, clone:hmp_04929. 44 7.9 1 (GE910544) 9559023_A04.ab1_c Past_norm2007 Porites astreoide... 44 7.9 1 (FG197874) AGN_PNL226cf1_f5.trimmed.seq AGN_PNL Nicotiana ta... 44 7.9 1 (FE595884) CAXG9149.rev Amphioxus Branchiostoma floridae unp... 44 7.9 1 (CP001184) Ureaplasma urealyticum serovar 10 str. ATCC 33699... 44 7.9 1 (CP000551) Prochlorococcus marinus str. AS9601, complete gen... 44 7.9 1 (AM902716) Bordetella petrii strain DSM 12804, complete genome. 44 7.9 1 (AE002115) Ureaplasma parvum serovar 3 str. ATCC 700970 sect... 44 7.9 1 (AC172257) Bos taurus clone CH240-525G21, WORKING DRAFT SEQU... 42 8.6 3 (EU169655) Petrophile canescens maturase K (matK) gene, comp... 38 9.9 2
>(C90831) Dictyostelium discoideum slug cDNA, clone SSJ203. Length = 749
Score = 521 bits (263), Expect(2) = 0.0 Identities = 272/275 (98%) Strand = Plus / Plus
Query: 366 aaataaatctaatgaatcattttcagtacaatatgaactttcagaaggtgtttactcttc 425 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 351 aaataaatctaatgaatcattttcagtacaatatgaactttcagaaggtgtttactcttc 410
Query: 426 agcacaagtaaatgaaccaaaatcaatttatttatggttaggtgcaaatgtaatgttgga 485 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 411 agcacaagtaaatgacccaaaatcaatttatttatggttaggtgcaaatgtaatgttgga 470
Query: 486 atattcatttgaagaagcaagagaggtattaagaaagaataaagatacagtcgatcgtca 545 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 471 atattcatttgaagaagcaagagaggtattaagaaagaataaagatacagtcgatcgtca 530
Query: 546 acttagtgagagcattcaagatttaggttttgtaaaggatcaaatcactacaactgatgt 605 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 531 acttagtgagagcattcaagatttaggttttgtaaaggatcaaatcactacaactgatgt 590
Query: 606 taacgtttcacgtgtttacaattatgatatcattc 640 ||| |||||||||||||||||||||||||||||| Sbjct: 591 taaactttcacgtgtttacaattatgatatcattc 625
Score = 507 bits (256), Expect(2) = 0.0 Identities = 268/271 (98%) Strand = Plus / Plus
Query: 97 tggccacaattacaaatgcagaccccatctaaaatattcatttggacccagttttnaaaa 156 ||||||| ||| | |||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 83 tggccaccatttccaatgcagaccccatctaaaatattcatttggacccagttttnaaaa 142
Query: 157 acagcacccaatatttccactggtcacattcaattcccattgtgaagaatctgttaaaga 216 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 143 acagcacccaatatttccactggtcacattcaattcccattgtgaagaatctgttaaaga 202
Query: 217 ttacagattgttgaaaatgttttcaaacaattacaaggagcatatcaaacatataaattt 276 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 203 ttacagattgttgaaaatgttttcaaacaattacaaggagcatatcaaacatataaattt 262
Query: 277 tttgaatcaaaactttcaaataatatttcactgttaactccaagatcaaaacaattacaa 336 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 263 tttgaatcaaaactttcaaataatatttcactgttaactccaagatcaaaacaattacaa 322
Query: 337 gaatctttagatattgtcgatcatgttgaaa 367 ||||||||||||||||||||||||||||||| Sbjct: 323 gaatctttagatattgtcgatcatgttgaaa 353
Lambda K H 1.37 0.711 1.31
Matrix: blastn matrix:1 -3 Number of Sequences: 102105510 Number of Hits to DB: 849,224,320 Number of extensions: 53669726 Number of successful extensions: 4549203 Number of sequences better than 10.0: 179 Length of query: 773 Length of database: 101,790,757,118 Length adjustment: 24 Effective length of query: 749 Effective length of database: 99,340,224,878 Effective search space: 74405828433622 Effective search space used: 74405828433622 X1: 11 (21.8 bits) S2: 22 (44.1 bits)
|
protein update |
2009. 7.30 |
Homology vs Protein |
|
PSORT |
|
VS (DIR, S) |
3 |
VH (FL, L) |
0 |
VF (FL, S) |
0 |
AH (FL, L) |
0 |
AF (FL, S) |
0 |
SL (DIR, L) |
0 |
SS (DIR, S) |
3 |
SH (FL, L) |
0 |
SF (FL, S) |
0 |
CH (FL, L) |
0 |
CF (FL, S) |
0 |
FCL (DIR, L) |
0 |
FC (DIR, S) |
0 |
FC-IC (SUB) |
0 |