>Contig-U04458-1 (Contig-U04458-1Q) /CSM_Contig/Contig-U04458-1Q.Seq.d
AATCACAATAAATACAGAAACACAAGATGAATAATTTAATTAAAGGTATT
TCAAATGTAACATTAAGATGTGTTTCACAAACATCAGCAACATCAACCTC
ATTATTTTATATACCAAGTATTACAAGATGTTTAACAAAAAAATGTTATG
GTAATAAATCAACAACAATTTTAAATAGTAGAATTAATAATAATAACAAT
GTCAATATTAGACAACAATCAACAACAGCAGCAAGTACAAATATTTTTCA
ACAAGCATTAAAAGAAACTAAACAAGAACAAGGTGAAGAGAAAGTTAAAG
TCGAAGATAATAAAATAGTTAGAGTATCACTCCAAAAATTAGGTTATAGT
GAATGGAAATTAATGGCATTATTCAAAGCACTTAGTGGTCTAAGTCTTAG
AGAAGCCATGGCTCAATTATCATTCACTGAACACAGTCCATCAAAAAAAC
TTAGAGGTCTTATTAAACATGCTGCACACGTTGCAGAGAATATTAAAGGA
ATGGATCCAGAACGTTTAATTATTAGTCAAATTTGGGCAGGGTCGTTCAT
TTTACAAAAGAAGTATTATGTGGAAAGGTAGAGGCCAAGGTTCTACTATT
CGTAAACCATTCTGTCATGTCTCTGTAGAAATTAAAGAATCAGAATTTAA
AGATGGTGAAAAGAAAGTTGGTAAATTTGGTAAAACTAATAAAACTTTCT
CTAAATATGATGGTAATTTTGATCATACTAAAGAATATTAAAAAAATAAA
AAAAAAAATAAAAAAAAAATAAACATAAAAAAATAAACATAAAAAATAGT
ATAAAAAAAAAAAAAAAAAAAAAAAAAACTACAAATAAAAACATTTTATA
AAAAAAAAAAAAAAAAAAAAAAAAAGGGCGGCGGC

est1=VSF650F,1,406
est2=VSI728E,1,703
est3=SSH495F,23,662
est4=SSA731F,138,478
est5=SSA731Z,435,815
est6=SSH495Z,688,885

sq*IQKHKMNNLIKGISNVTLRCVSQTSATSTSLFYIPSITRCLTKKCYGNKSTTILNSR
INNNNNVNIRQQSTTAASTNIFQQALKETKQEQGEEKVKVEDNKIVRVSLQKLGYSEWKL
MALFKALSGLSLREAMAQLSFTEHSPSKKLRGLIKHAAHVAENIKGMDPERLIISQIWAG
SFILQKKYYVER*rprfyys*tilsclcrn*riri*rw*kesw*iw*n**nfl*i*w*f*
sy*rilkk*kkk*kknkhkkiniknsikkkkkkkkttnknil*kkkkkkkkgrr

Frame A:
nhnkyrntr*ii*lkvfqm*h*dvfhkhqqhqphyfiyqvlqdv*qknvmvinqqqf*iv
eliiitmsildnnqqqqqvqiffnkh*kklnknkvkrklkskiik*leyhskn*vivngn
*whyskhlvv*vlekpwlnyhslntvhqknlevllnmlhtlqrilkewiqnv*llvkfgq
grsfykrsimwkgrgqgstirkpfchvsveikesefkdgekkvgkfgktnktfskydgnf
dhtkey*knkkknkkkinikk*t*kiv*kkkkkkkklqiktfykkkkkkkkkggg


Frame B:
itintetqde*fn*ryfkcnikmcftnisninliilytkyykmfnkkmlw**innnfk**
n****qcqy*ttinnsskykyfstsikrn*trtr*res*srr**ns*sitpkirl**mei
ngiiqst*wsks*rshgsiiih*tqsikkt*rsy*tcctrcrey*rngsrtfny*snlgr
vvhftkevlcgkveakvllfvnhsvmsl*klknqnlkmvkrklvnlvkliklslnmmvil
iilknikkikkkikkk*t*knkhkk*ykkkkkkkknyk*khfikkkkkkkkraa


Frame C:
sq*IQKHKMNNLIKGISNVTLRCVSQTSATSTSLFYIPSITRCLTKKCYGNKSTTILNSR
INNNNNVNIRQQSTTAASTNIFQQALKETKQEQGEEKVKVEDNKIVRVSLQKLGYSEWKL
MALFKALSGLSLREAMAQLSFTEHSPSKKLRGLIKHAAHVAENIKGMDPERLIISQIWAG
SFILQKKYYVER*rprfyys*tilsclcrn*riri*rw*kesw*iw*n**nfl*i*w*f*
sy*rilkk*kkk*kknkhkkiniknsikkkkkkkkttnknil*kkkkkkkkgrr

Query= Contig-U04458-1 (Contig-U04458-1Q)
/CSM_Contig/Contig-U04458-1Q.Seq.d
         (885 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U04458-1 (Contig-U04458-1Q) /CSM_Contig/Conti...  1382  0.0
Contig-U13423-1 (Contig-U13423-1Q) /CSM_Contig/Conti...    38  0.016
Contig-U13063-1 (Contig-U13063-1Q) /CSM_Contig/Conti...    38  0.016
Contig-U12193-1 (Contig-U12193-1Q) /CSM_Contig/Conti...    38  0.016
Contig-U12148-1 (Contig-U12148-1Q) /CSM_Contig/Conti...    38  0.016
Contig-U11733-1 (Contig-U11733-1Q) /CSM_Contig/Conti...    38  0.016
Contig-U03229-1 (Contig-U03229-1Q) /CSM_Contig/Conti...    38  0.016
Contig-U14180-1 (Contig-U14180-1Q) /CSM_Contig/Conti...    36  0.062
Contig-U13988-1 (Contig-U13988-1Q) /CSM_Contig/Conti...    36  0.062
Contig-U06778-1 (Contig-U06778-1Q) /CSM_Contig/Conti...    32  0.97

>Contig-U04458-1 (Contig-U04458-1Q) /CSM_Contig/Contig-U04458-1Q.Seq.d
          Length = 885

 Score = 1382 bits (697), Expect = 0.0
 Identities = 725/739 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   aatcacaataaatacagaaacacaagatgaataatttaattaaaggtatttcaaatgtaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   aatcacaataaatacagaaacacaagatgaataatttaattaaaggtatttcaaatgtaa 60

                                                                       
Query: 61  cattaagatgtgtttcacaaacatcagcaacatcaacctcattattttatataccaagta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  cattaagatgtgtttcacaaacatcagcaacatcaacctcattattttatataccaagta 120

                                                                       
Query: 121 ttacaagatgtttaacnnnnnnntgttatggtaataaatcaacaacaattttaaatagta 180
           ||||||||||||||||       |||||||||||||||||||||||||||||||||||||
Sbjct: 121 ttacaagatgtttaacaaaaaaatgttatggtaataaatcaacaacaattttaaatagta 180

                                                                       
Query: 181 gaattaataataataacaatgtcaatattagacaacaatcaacaacagcagcaagtacaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 gaattaataataataacaatgtcaatattagacaacaatcaacaacagcagcaagtacaa 240

                                                                       
Query: 241 atatttttcaacaagcattaaaagaaactaaacaagaacaaggtgaagagaaagttaaag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 atatttttcaacaagcattaaaagaaactaaacaagaacaaggtgaagagaaagttaaag 300

                                                                       
Query: 301 tcgaagataataaaatagttagagtatcactccaaaaattaggttatagtgaatggaaat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tcgaagataataaaatagttagagtatcactccaaaaattaggttatagtgaatggaaat 360

                                                                       
Query: 361 taatggcattattcaaagcacttagtggtctaagtcttagagaagccatggctcaattat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 taatggcattattcaaagcacttagtggtctaagtcttagagaagccatggctcaattat 420

                                                                       
Query: 421 cattcactgaacacagtccatcnnnnnnncttagaggtcttattaaacatgctgcacacg 480
           ||||||||||||||||||||||       |||||||||||||||||||||||||||||||
Sbjct: 421 cattcactgaacacagtccatcaaaaaaacttagaggtcttattaaacatgctgcacacg 480

                                                                       
Query: 481 ttgcagagaatattaaaggaatggatccagaacgtttaattattagtcaaatttgggcag 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 ttgcagagaatattaaaggaatggatccagaacgtttaattattagtcaaatttgggcag 540

                                                                       
Query: 541 ggtcgttcattttacaaaagaagtattatgtggaaaggtagaggccaaggttctactatt 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 ggtcgttcattttacaaaagaagtattatgtggaaaggtagaggccaaggttctactatt 600

                                                                       
Query: 601 cgtaaaccattctgtcatgtctctgtagaaattaaagaatcagaatttaaagatggtgaa 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 cgtaaaccattctgtcatgtctctgtagaaattaaagaatcagaatttaaagatggtgaa 660

                                                                       
Query: 661 aagaaagttggtaaatttggtaaaactaataaaactttctctaaatatgatggtaatttt 720
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 aagaaagttggtaaatttggtaaaactaataaaactttctctaaatatgatggtaatttt 720

                              
Query: 721 gatcatactaaagaatatt 739
           |||||||||||||||||||
Sbjct: 721 gatcatactaaagaatatt 739


>Contig-U13423-1 (Contig-U13423-1Q) /CSM_Contig/Contig-U13423-1Q.Seq.d
          Length = 1236

 Score = 38.2 bits (19), Expect = 0.016
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                   
Query: 173  aaatagtagaattaataataata 195
            |||||||| ||||||||||||||
Sbjct: 1124 aaatagtaaaattaataataata 1146


>Contig-U13063-1 (Contig-U13063-1Q) /CSM_Contig/Contig-U13063-1Q.Seq.d
          Length = 830

 Score = 38.2 bits (19), Expect = 0.016
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 182 aattaataataataacaat 200
           |||||||||||||||||||
Sbjct: 800 aattaataataataacaat 782


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 25,015
Number of Sequences: 6905
Number of extensions: 25015
Number of successful extensions: 2745
Number of sequences better than 10.0: 581
length of query: 885
length of database: 5,674,871
effective HSP length: 16
effective length of query: 869
effective length of database: 5,564,391
effective search space: 4835455779
effective search space used: 4835455779
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)

Query= Contig-U04458-1 (Contig-U04458-1Q) /CSM_Contig/Contig-U04458-1Q.Seq.d
         (885 letters)

Database: ddbj_A
           102,105,510 sequences; 101,790,757,118 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU269150) Dictyostelium discoideum vegetative cDNA clone:VS...   579   0.0    3
(AU269149) Dictyostelium discoideum vegetative cDNA clone:VS...   593   0.0    3
(AU265557) Dictyostelium discoideum vegetative cDNA clone:VS...   521   0.0    2
(AU037000) Dictyostelium discoideum slug cDNA, clone SSA731.      394   e-154  2
(AU072740) Dictyostelium discoideum slug cDNA, clone SSA731.      464   e-126  1
(AU073542) Dictyostelium discoideum slug cDNA, clone SSH495.      236   e-119  2
(AU038268) Dictyostelium discoideum slug cDNA, clone SSH495.      101   4e-17  1
(AU265558) Dictyostelium discoideum vegetative cDNA clone:VS...    38   6e-04  2
(EY356498) CAWZ439.fwd CAWZ Helobdella robusta Primary Late ...    40   0.11   2
(CU759287) A BAC library has been constructed from PN40024 g...    50   0.15   1
(AC115684) Dictyostelium discoideum chromosome 2 map 3108975...    32   0.24   9
(BX663503) Zebrafish DNA sequence from clone CH211-136A13 in...    34   0.33   2
(AC091808) Homo sapiens chromosome X clone RP11-157D23 map p...    44   0.37   3
(EY382742) CAXA4209.fwd CAXA Helobdella robusta Subtracted L...    38   0.42   2
(AC201025) Strongylocentrotus purpuratus clone R3-12I14, WOR...    42   0.44   4
(EY383727) CAXA476.fwd CAXA Helobdella robusta Subtracted La...    38   0.46   2
(AC154037) Mus musculus chromosome 8 clone RP23-292G7, WORKI...    46   0.48   4
(EY391036) CAXA9052.fwd CAXA Helobdella robusta Subtracted L...    38   0.50   2
(EY385814) CAXA5893.fwd CAXA Helobdella robusta Subtracted L...    38   0.50   2
(EY347375) CAWZ15582.fwd CAWZ Helobdella robusta Primary Lat...    38   0.50   2
(EY389422) CAXA7842.fwd CAXA Helobdella robusta Subtracted L...    38   0.51   2
(EY357131) CAWZ4738.fwd CAWZ Helobdella robusta Primary Late...    38   0.52   2
(EY380138) CAXA2705.fwd CAXA Helobdella robusta Subtracted L...    38   0.54   2
(EJ360639) 1092963685420 Global-Ocean-Sampling_GS-28-01-01-1...    48   0.58   1
(DU522949) 1098609868288 CHORI-243 Ovis aries genomic clone ...    48   0.58   1
(AC079416) Homo sapiens chromosome 16 clone RP11-454F8, comp...    34   0.92   6
(CT998555) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    36   1.2    2
(AC179413) Strongylocentrotus purpuratus clone R3-1101A4, WO...    36   1.2    2
(CU744541) A BAC library has been constructed from PN40024 g...    38   1.3    2
(CR854914) Zebrafish DNA sequence from clone DKEY-256M11 in ...    38   1.3    5
(AM472098) Vitis vinifera contig VV78X210992.5, whole genome...    34   1.5    2
(EI845949) POTJ779TF Solanum tuberosum RHPOTKEY BAC ends Sol...    34   1.6    2
(EI831838) POTHS28TR Solanum tuberosum RHPOTKEY BAC ends Sol...    34   1.6    2
(EJ575353) 1092960096515 Global-Ocean-Sampling_GS-29-01-01-1...    44   1.6    2
(CR388031) Zebrafish DNA sequence from clone CH211-192P3 in ...    40   1.7    3
(AC122998) Rattus norvegicus clone CH230-33N23, *** SEQUENCI...    38   1.7    5
(EJ629084) 1092963289260 Global-Ocean-Sampling_GS-29-01-01-1...    44   1.8    2
(EJ550516) 1092959438852 Global-Ocean-Sampling_GS-29-01-01-1...    42   1.9    2
(AC116986) Dictyostelium discoideum chromosome 2 map 2234041...    32   2.1    11
(AC144485) Gasterosteus aculeatus clone CH213-101E8, complet...    46   2.3    1
(AC121985) Mus musculus BAC clone RP24-293C3 from chromosome...    46   2.3    1
(AC192730) Pan troglodytes BAC clone CH251-497K24 from chrom...    46   2.3    1
(Z99707) Arabidopsis thaliana DNA chromosome 4, ESSA I AP2 c...    46   2.3    1
(BT042092) Zea mays full-length cDNA clone ZM_BFb0128O06 mRN...    46   2.3    1
(AM269987) Aspergillus niger contig An01c0400, complete genome.    46   2.3    1
(AL161590) Arabidopsis thaliana DNA chromosome 4, contig fra...    46   2.3    1
(AC009220) Homo sapiens chromosome 7 clone RP11-365F18, comp...    46   2.3    1
(AC146292) Gallus gallus clone CH261-162O9, WORKING DRAFT SE...    46   2.3    1
(AC210021) Zea mays chromosome 5 clone CH201-504P20; ZMMBBc0...    46   2.3    1
(AC209554) Homo sapiens chromosome 4 clone ABC10-44748500F13...    46   2.3    1
(AC207191) Zea mays chromosome 5 clone CH201-382G9; ZMMBBc03...    46   2.3    1
(AC201833) Zea mays chromosome 5 clone CH201-104J17; ZMMBBc0...    46   2.3    1
(EJ863294) 1093018226103 Global-Ocean-Sampling_GS-30-02-01-1...    46   2.3    1
(EJ790305) 1093017374134 Global-Ocean-Sampling_GS-30-02-01-1...    46   2.3    1
(EJ001017) 1091120761946 Global-Ocean-Sampling_GS-26-01-01-1...    46   2.3    1
(EI724338) 2B421020L20TF BAC library from breast tumor sampl...    46   2.3    1
(CZ277695) ZMMBF0062E07f ZMMBF Zea mays genomic clone ZMMBF0...    46   2.3    1
(CC420182) PUHQR18TD ZM_0.6_1.0_KB Zea mays genomic clone ZM...    46   2.3    1
(DW820541) MSAM239935_0897_3914 LCM-dissected maize shoot ap...    46   2.3    1
(DW599266) CGX141-E02.x1d-t SHGC-CGX2 Gasterosteus aculeatus...    46   2.3    1
(DW033690) CFW224-F07.x1d-t SHGC-CFW2 Gasterosteus aculeatus...    46   2.3    1
(DV013211) CNB279-A09.x1d-t SHGC-CNB Gasterosteus aculeatus ...    46   2.3    1
(DN711476) CLJ95-E06.x1d-t SHGC-CLJ Gasterosteus aculeatus c...    46   2.3    1
(T57403) yb51c07.r1 Stratagene fetal spleen (#937205) Homo s...    46   2.3    1
(AC112338) Rattus norvegicus clone CH230-216D10, WORKING DRA...    36   2.5    7
(AJ928220) Theileria annulata EST, clone tam029f06_p1k.            32   2.5    4
(FE231187) CAPG10268.fwd CAPG Naegleria gruberi amoeba stage...    32   2.5    3
(AL159978) Human DNA sequence from clone RP11-496O3 on chrom...    42   2.8    6
(CR392022) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    34   2.9    7
(AP008210) Oryza sativa (japonica cultivar-group) genomic DN...    34   2.9    2
(CU929360) Zebrafish DNA sequence from clone CH73-145L22 in ...    36   3.7    4
(AC026486) Homo sapiens clone RP11-24K7, WORKING DRAFT SEQUE...    44   3.8    2
(AC023526) Homo sapiens clone RP11-587F19, WORKING DRAFT SEQ...    34   4.3    2
(AC096174) Rattus norvegicus clone CH230-11I11, *** SEQUENCI...    32   4.3    2
(AC142127) Rattus norvegicus clone CH230-331N7, WORKING DRAF...    32   4.3    2
(AC149285) Mus musculus BAC clone RP23-139J2 from 5, complet...    32   4.3    2
(AL161555) Arabidopsis thaliana DNA chromosome 4, contig fra...    32   4.3    2
(AC184358) Strongylocentrotus purpuratus clone R3-1009F18, W...    34   4.3    2
(AC116963) Dictyostelium discoideum chromosome 2 map 4657875...    38   4.3    7
(AC132243) Mus musculus BAC clone RP24-414C11 from 5, comple...    32   4.3    2
(AC177792) Strongylocentrotus purpuratus clone R3-1002C21, W...    34   4.4    2
(AC106748) Homo sapiens chromosome 5 clone RP11-155G15, comp...    34   4.4    2
(AL606642) Oryza sativa genomic DNA, chromosome 4, BAC clone...    34   4.4    2
(AL606620) Oryza sativa genomic DNA, chromosome 4, BAC clone...    34   4.4    2
(AM792929) Nicotiana tabacum EST, clone nt006063026.               32   4.4    3
(AL035527) Arabidopsis thaliana DNA chromosome 4, BAC clone ...    32   4.5    2
(AC180353) Strongylocentrotus purpuratus clone R3-3118D14, W...    40   4.5    5
(AF153362) Dictyostelium discoideum adenylyl cyclase (acrA) ...    34   4.6    4
(DI086933) Transgenic non-human animals for pharmacological ...    32   4.6    2
(DD097946) Transgenic non-human animals for pharmacological ...    32   4.6    2
(FP102805) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    36   4.6    5
(CT030228) Zebrafish DNA sequence from clone DKEY-208K17 in ...    34   4.7    2
(AC163679) Mus musculus BAC clone RP24-104E24 from chromosom...    40   4.8    2
(FI268569) CccaBb047-B1JF CccABb Cajanus cajan genomic clone...    32   4.9    3
(CR450814) Zebrafish DNA sequence from clone CH211-157B11 in...    40   5.0    5
(CR361562) Zebrafish DNA sequence from clone CH211-281H24 in...    34   5.3    5
(CR450832) Zebrafish DNA sequence from clone CH211-278F9 in ...    38   5.3    5
(DV614161) EST1217157 Glossina morsitans morsitans Fat body ...    32   5.8    2
(EI179777) MUGQ_CH252P186J11Sp6_CN272_040 CHORI-252 Vervet M...    42   5.8    2
(EY362527) CAWZ8296.fwd CAWZ Helobdella robusta Primary Late...    34   5.8    2
(AQ254519) CpG0675B CpIOWAgDNA1 Cryptosporidium parvum genom...    32   5.8    2
(BX470210) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    38   5.9    4
(CR940368) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    34   6.0    6
(CU695286) Brassica rapa subsp. pekinensis clone KBrH006C08,...    44   6.1    3
(ET658937) MUGQ_CH252P443J19Sp6_CP851_072 CHORI-252 Vervet M...    42   6.1    2
(EY388553) CAXA7363.fwd CAXA Helobdella robusta Subtracted L...    38   6.8    2
(AC215366) Solanum lycopersicum chromosome 2 clone C02HBa003...    38   7.4    4
(BH022740) GH_MBb0003I16f Gossypium hirsutum L. Gossypium hi...    36   7.6    2
(FG288839) 1108793284722 New World Screwworm Egg 9261 ESTs C...    28   7.7    4
(FG140414) AGN_ELP021xm02f1.ab1 AGN_ELP Nicotiana tabacum cD...    32   7.7    3
(AC174739) Strongylocentrotus purpuratus clone R3-1008D12, W...    36   7.9    5
(FG134042) AGN_ELP015xe10f1.ab1 AGN_ELP Nicotiana tabacum cD...    32   7.9    3
(EB681117) KL4B.112G17F.060131T7 KL4B Nicotiana tabacum cDNA...    32   7.9    3
(AP010406) Lotus japonicus genomic DNA, chromosome 3, clone:...    38   8.1    6
(BX470139) Zebrafish DNA sequence from clone CH211-141O12 in...    40   8.3    5
(FI044578) CHO_OF6471xp22r1.ab1 CHO_OF6 Nicotiana tabacum ge...    32   8.5    3
(FG283787) 1108770637102 New World Screwworm Egg 9261 ESTs C...    28   8.7    4
(AC027523) Homo sapiens chromosome 18 clone RP11-311F3 map 1...    34   8.8    9
(FH218790) CHO_OF3376xp11f1.ab1 CHO_OF3 Nicotiana tabacum ge...    32   8.8    3
(AX685205) Sequence 12 from Patent WO02066652.                     44   9.0    2
(AF308663) Cowdria ruminantium clone 4hw hypothetical ferrip...    44   9.0    2
(FH460998) CHO_OF4934xp17r1.ab1 CHO_OF4 Nicotiana tabacum ge...    32   9.0    3
(CR854838) Zebrafish DNA sequence from clone CH211-130H14 in...    44   9.0    1
(CR354586) Zebrafish DNA sequence from clone CH211-142B20 in...    44   9.0    1
(BX890545) Zebrafish DNA sequence from clone CH211-253N4 in ...    44   9.0    1
(BX649258) Zebrafish DNA sequence from clone CH211-203F4 in ...    44   9.0    1
(BX649245) Zebrafish DNA sequence from clone CH211-213C4 in ...    44   9.0    1
(BX530070) Zebrafish DNA sequence from clone DKEY-245C12 in ...    44   9.0    1
(BX470227) Zebrafish DNA sequence from clone CH211-12D10 in ...    44   9.0    1
(BR000041) TPA_inf: Danio rerio SN4TDR gene for 4SNc-Tudor d...    44   9.0    1
(GF056951) pRRL2:Newb:20080411:62484 USMARC Pig Breed SNP Di...    44   9.0    1
(AC171106) Pan troglodytes chromosome X clone PTB-109O22 map...    44   9.0    1
(CP000502) Pichia stipitis CBS 6054 chromosome 8, complete s...    44   9.0    1
(AF041468) Guillardia theta complete plastid genome.               44   9.0    1
(AY277703) Phyllodistomum sp. Lithuania-VS-2003 from Pisidiu...    44   9.0    1
(DQ525716) Homo sapiens transferrin (TF) gene, complete cds.       44   9.0    1
(AY308797) Homo sapiens transferrin (TF) gene, complete cds.       44   9.0    1
(AL356952) Human DNA sequence from clone RP11-809M12 on chro...    44   9.0    1
(AC108879) Homo sapiens chromosome X clone RP11-265P11 map p...    44   9.0    1
(AC090503) Homo sapiens 12q BAC RP11-314D7 (Roswell Park Can...    44   9.0    1
(AC073538) Homo sapiens chromosome 5 clone CTD-2338P8, compl...    44   9.0    1
(AC027341) Homo sapiens chromosome 5 clone CTD-2261B13, comp...    44   9.0    1
(AC023395) Homo sapiens chromosome 18, clone RP11-484N16, co...    44   9.0    1
(AC021701) Homo sapiens chromosome 18, clone RP11-704G7, com...    44   9.0    1
(AC153322) Carollia perspicillata clone 174D15, WORKING DRAF...    44   9.0    1
(AC153097) Carollia perspicillata clone 388N11, WORKING DRAF...    44   9.0    1
(AC152034) Dasypus novemcinctus clone VMRC5-215O8, WORKING D...    44   9.0    1
(AC135412) Rattus norvegicus clone CH230-4M1, *** SEQUENCING...    44   9.0    1
(AC127138) Rattus norvegicus clone CH230-9I21, *** SEQUENCIN...    44   9.0    1
(FP102094) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   9.0    1
(CU928940) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   9.0    1
(CU855700) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   9.0    1
(CU694510) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   9.0    1
(CU571368) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   9.0    1
(AC073361) Homo sapiens chromosome 3 clone RP11-160F1, WORKI...    44   9.0    1
(AC064858) Homo sapiens chromosome 12 clone RP11-314D7, WORK...    44   9.0    1
(CU464076) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   9.0    1
(CU062564) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   9.0    1
(CR354592) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    44   9.0    1
(BX537105) Zebrafish DNA sequence *** SEQUENCING CANCELLED *...    44   9.0    1
(AC232057) Solanum tuberosum chromosome 5 clone RH076O08, **...    44   9.0    1
(AC229619) Pongo abelii clone CH253-492I12, WORKING DRAFT SE...    44   9.0    1
(AC209389) Zea mays chromosome 4 clone CH201-306N21; ZMMBBc0...    44   9.0    1
(AC207496) Pongo abelii clone CH253-47L16, WORKING DRAFT SEQ...    44   9.0    1
(AC203944) Zea mays chromosome 4 clone ZMMBBb-547P8; ZMMBBb0...    44   9.0    1
(AC200056) Zea mays chromosome 10 clone CH201-326J9; ZMMBBc0...    44   9.0    1
(AC192881) Echinops telfairi clone CH238-153G14, WORKING DRA...    44   9.0    1
(AC183362) Dasypus novemcinctus clone VMRC5-18H5, WORKING DR...    44   9.0    1
(AC024383) Homo sapiens clone RP11-736N14, WORKING DRAFT SEQ...    44   9.0    1
(FI230359) CccaBa039-I21TV CccABa Cajanus cajan genomic clon...    44   9.0    1
(FH533961) CHO_OF4737xc02f1.ab1 CHO_OF4 Nicotiana tabacum ge...    44   9.0    1
(FH514947) CHO_OF4710xb06r1.ab1 CHO_OF4 Nicotiana tabacum ge...    44   9.0    1
(ER882639) MUGQ_CH252P275I20T7_CN578_072 CHORI-252 Vervet Mo...    44   9.0    1
(EK236617) 1095460203422 Global-Ocean-Sampling_GS-31-01-01-1...    44   9.0    1
(EJ918944) 1093018590476 Global-Ocean-Sampling_GS-30-02-01-1...    44   9.0    1
(EJ911908) 1093018541504 Global-Ocean-Sampling_GS-30-02-01-1...    44   9.0    1
(EJ905642) 1093018512548 Global-Ocean-Sampling_GS-30-02-01-1...    44   9.0    1
(EJ862300) 1093018210158 Global-Ocean-Sampling_GS-30-02-01-1...    44   9.0    1
(EJ597968) 1092961109212 Global-Ocean-Sampling_GS-29-01-01-1...    44   9.0    1
(EJ597638) 1092961105756 Global-Ocean-Sampling_GS-29-01-01-1...    44   9.0    1
(EI382426) POTCL59TF Solanum tuberosum RHPOTKEY BAC ends Sol...    44   9.0    1
(DE416799) Bombyx mori genomic DNA, BAC clone:17A9C.               44   9.0    1
(CW934465) EDCCO42TR A. castellanii, 6-8 kb library from tot...    44   9.0    1
(CT427462) Sus scrofa genomic clone CH242-521N13, genomic su...    44   9.0    1
(CG393145) ZMMBBc0005I07r ZMMBBc (EcoRI) Zea mays subsp. may...    44   9.0    1
(BZ602604) WHACG22TF Human MCF7 breast cancer cell line libr...    44   9.0    1
(BH954862) odh99h09.b1 B.oleracea002 Brassica oleracea genom...    44   9.0    1
(BH704792) BOHUX27TR BO_2_3_KB Brassica oleracea genomic clo...    44   9.0    1
(EL370374) CCES6358.b1_K06.ab1 CCE(LMS) endive Cichorium end...    44   9.0    1
(EH701687) CCIS13757.b1_J08.ab1 CCI(LMS) chicory Cichorium i...    44   9.0    1
(EB456346) 1099341391056 12-DrosW-std-1P6Kb Drosophila willi...    44   9.0    1
(DN073722) JGI_CABD7910.fwd NIH_XGC_tropLun1 Xenopus (Silura...    44   9.0    1
(DN073721) JGI_CABD7910.rev NIH_XGC_tropLun1 Xenopus (Silura...    44   9.0    1
(DB862746) Lipochromis sp. 'matumbi hunter' cDNA clone:hm743...    44   9.0    1
(DA408432) Homo sapiens cDNA clone BRTHA3014436, 5' end, mRN...    44   9.0    1
(CT770178) Paramecium tetraurelia 5-PRIME EST from clone LK0...    44   9.0    1
(CT720722) Danio rerio EST, clone ZF_mu_228b22 5'.                 44   9.0    1
(GH158438) G994P15FK11.T0 Neurospora crassa cDNA - 1 hour Ni...    44   9.0    1
(GH158306) G994P15RK11.T0 Neurospora crassa cDNA - 1 hour Ni...    44   9.0    1
(GH154170) G994P159FH15.T0 Neurospora crassa cDNA - 1 hour N...    44   9.0    1
(GH152004) G994P165RN17.T0 Neurospora crassa cDNA - 1 hour N...    44   9.0    1
(GH151723) G994P165FN17.T0 Neurospora crassa cDNA - 1 hour N...    44   9.0    1
(GH142113) G994P140RP22.T0 Neurospora crassa cDNA - 1 hour N...    44   9.0    1
(GH141936) G994P140RM16.T0 Neurospora crassa cDNA - 1 hour N...    44   9.0    1
(GH138696) G994P135RC21.T0 Neurospora crassa cDNA - 1 hour N...    44   9.0    1
(GH138444) G994P135FC21.T0 Neurospora crassa cDNA - 1 hour N...    44   9.0    1
(GH121817) G993P13RE22.T0 Neurospora crassa cDNA - 1 hour Gl...    44   9.0    1
(GH121549) G993P13FE22.T0 Neurospora crassa cDNA - 1 hour Gl...    44   9.0    1
(GH117803) G993P149RM2.T0 Neurospora crassa cDNA - 1 hour Gl...    44   9.0    1
(GH117686) G993P149RN20.T0 Neurospora crassa cDNA - 1 hour G...    44   9.0    1
(GH117555) G993P149FM2.T0 Neurospora crassa cDNA - 1 hour Gl...    44   9.0    1
(GH094717) G993P117RM11.T0 Neurospora crassa cDNA - 1 hour G...    44   9.0    1
(GH094527) G993P117FM11.T0 Neurospora crassa cDNA - 1 hour G...    44   9.0    1
(GH094274) G993P117FE12.T0 Neurospora crassa cDNA - 1 hour G...    44   9.0    1
(GH093985) G993P117RE12.T0 Neurospora crassa cDNA - 1 hour G...    44   9.0    1
(GH086803) G992P15RC23.T0 Neurospora crassa cDNA - 1 hour He...    44   9.0    1
(GH086610) G992P156RO18.T0 Neurospora crassa cDNA - 1 hour H...    44   9.0    1
(GH086432) G992P156FO18.T0 Neurospora crassa cDNA - 1 hour H...    44   9.0    1
(GH086126) G992P156RK17.T0 Neurospora crassa cDNA - 1 hour H...    44   9.0    1
(GH086044) G992P156FK17.T0 Neurospora crassa cDNA - 1 hour H...    44   9.0    1
(GH082878) G992P153RJ7.T0 Neurospora crassa cDNA - 1 hour He...    44   9.0    1
(GH082843) G992P153FJ7.T0 Neurospora crassa cDNA - 1 hour He...    44   9.0    1
(GH059181) G992P121RP16.T0 Neurospora crassa cDNA - 1 hour H...    44   9.0    1
(GH040606) G906P123FF19.T0 Neurospora crassa cDNA - 7 hours ...    44   9.0    1
(GH025640) G1220P162RG19.T0 Neurospora crassa cDNA - 1 hour ...    44   9.0    1
(GH025449) G1220P162FG19.T0 Neurospora crassa cDNA - 1 hour ...    44   9.0    1
(GH020097) G1220P155FD21.T0 Neurospora crassa cDNA - 1 hour ...    44   9.0    1
(GH015160) G1220P148RE18.T0 Neurospora crassa cDNA - 1 hour ...    44   9.0    1
(GH014910) G1220P148FE18.T0 Neurospora crassa cDNA - 1 hour ...    44   9.0    1
(GH014021) G1220P147RF16.T0 Neurospora crassa cDNA - 1 hour ...    44   9.0    1
(GH013928) G1220P147RG15.T0 Neurospora crassa cDNA - 1 hour ...    44   9.0    1
(GH002224) G1220P126FN8.T0 Neurospora crassa cDNA - 1 hour O...    44   9.0    1
(GH002101) G1220P126RN8.T0 Neurospora crassa cDNA - 1 hour O...    44   9.0    1
(GE995590) G1220P16RM13.T0 Neurospora crassa cDNA - 1 hour O...    44   9.0    1
(GE939685) G1176P134RB24.T0 Neurospora crassa cDNA - 1 hour ...    44   9.0    1
(GE937392) G1176P131RN3.T0 Neurospora crassa cDNA - 1 hour O...    44   9.0    1
(GE937148) G1176P131FN3.T0 Neurospora crassa cDNA - 1 hour O...    44   9.0    1
(GE934338) G1176P127FA17.T0 Neurospora crassa cDNA - 1 hour ...    44   9.0    1
(GE934118) G1176P127RA17.T0 Neurospora crassa cDNA - 1 hour ...    44   9.0    1
(GE920383) G1175P16RP1.T0 Neurospora crassa cDNA - 48 hours ...    44   9.0    1
(GD203202) G1045P346RL17.T1 Aplysia californica Pooled Norma...    44   9.0    1
(FE844400) CAFH395.rev CAFH Pichia stipitis aerobic dextrose...    44   9.0    1
(EY179226) CBTI6812.b1_G24.ab1:P Triphysaria pusilla root ti...    44   9.0    1
(CR925678) Ehrlichia ruminantium str. Welgevonden, complete ...    44   9.0    1
(CR925677) Ehrlichia ruminantium str. Gardel, complete genome.     44   9.0    1
(CR767821) Ehrlichia ruminantium strain Welgevonden, complet...    44   9.0    1
(AU061013) Dictyostelium discoideum slug cDNA, clone SLC619.       38   9.2    2
(FG642923) TT-36_M20 K326 early senescent leaf library Nicot...    32   9.4    3
(FH218871) CHO_OF3376xp11r1.ab1 CHO_OF3 Nicotiana tabacum ge...    32   9.5    3
(FI013747) CHO_OF6915xf05f1.ab1 CHO_OF6 Nicotiana tabacum ge...    32   9.6    3
(FH432983) CHO_OF4947xb08f1.ab1 CHO_OF4 Nicotiana tabacum ge...    32   9.6    3
(FG145347) AGN_RPC012xa21f1.ab1 AGN_RPC Nicotiana tabacum cD...    32   9.6    3
(FG148189) AGN_RPC003xp13f1.ab1 AGN_RPC Nicotiana tabacum cD...    32   9.7    3
(AM285305) Spiroplasma citri GII3-3X chromosome, contig Cont...    30   9.8    9
(FG142418) AGN_RPC022xn11f1.ab1 AGN_RPC Nicotiana tabacum cD...    32   9.8    3
(EB449151) KT7C.102A16F.051216T7 KT7 Nicotiana tabacum cDNA ...    32   9.9    3
(FG136681) AGN_ELP007xp07f1.ab1 AGN_ELP Nicotiana tabacum cD...    32   10.0   3

>(AU269150) Dictyostelium discoideum vegetative cDNA clone:VSI728,
           3' end single read.
          Length = 565

 Score =  579 bits (292), Expect(3) = 0.0
 Identities = 297/299 (99%)
 Strand = Plus / Plus


Query: 144 tgttatggtaataaatcaacaacaattttaaatagtagaattaataataataacaatgtc 203
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 7   tgttatggtaataaatcaacaccaattttaaatagtagaattaataataataacaatgtc 66


Query: 204 aatattagacaacaatcaacaacagcagcaagtacaaatatttttcaacaagcattaaaa 263
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 67  aatattagacaacaatcaacaacagcagcaagtncaaatatttttcaacaagcattaaaa 126


Query: 264 gaaactaaacaagaacaaggtgaagagaaagttaaagtcgaagataataaaatagttaga 323
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 127 gaaactaaacaagaacaaggtgaagagaaagttaaagtcgaagataataaaatagttaga 186


Query: 324 gtatcactccaaaaattaggttatagtgaatggaaattaatggcattattcaaagcactt 383
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 187 gtatcactccaaaaattaggttatagtgaatggaaattaatggcattattcaaagcactt 246


Query: 384 agtggtctaagtcttagagaagccatggctcaattatcattcactgaacacagtccatc 442
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 agtggtctaagtcttagagaagccatggctcaattatcattcactgaacacagtccatc 305

 Score =  297 bits (150), Expect(3) = 0.0
 Identities = 158/162 (97%)
 Strand = Plus / Plus


Query: 541 ggtcgttcattttacaaaagaagtattatgtggaaaggtagaggccaaggttctactatt 600
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 ggtcgttcattttacnaaagaagtattatgtggaaaggtagaggccaaggttctactatt 462


Query: 601 cgtaaaccattctgtcatgtctctgtagaaattaaagaatcagaatttaaagatggtgaa 660
           ||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 463 cgtnaaccattctgtcatgtctctgtagnaattaaagaatcagaatttaaagatggtgaa 522


Query: 661 aagaaagttggtaaatttggtaaaactaataaaactttctct 702
           ||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 523 aagaaagttggtaaatttggtaaaactaataaanctttctct 564

 Score =  182 bits (92), Expect(3) = 0.0
 Identities = 92/92 (100%)
 Strand = Plus / Plus


Query: 450 cttagaggtcttattaaacatgctgcacacgttgcagagaatattaaaggaatggatcca 509
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 cttagaggtcttattaaacatgctgcacacgttgcagagaatattaaaggaatggatcca 372


Query: 510 gaacgtttaattattagtcaaatttgggcagg 541
           ||||||||||||||||||||||||||||||||
Sbjct: 373 gaacgtttaattattagtcaaatttgggcagg 404

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 102105510
Number of Hits to DB: 1,043,887,388
Number of extensions: 69703156
Number of successful extensions: 5998638
Number of sequences better than 10.0: 258
Length of query: 885
Length of database: 101,790,757,118
Length adjustment: 24
Effective length of query: 861
Effective length of database: 99,340,224,878
Effective search space: 85531933619958
Effective search space used: 85531933619958
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)

Query= Contig-U04458-1 (Contig-U04458-1Q) /CSM_Contig/Contig-U04458-1Q.Seq.d
         (885 letters)

Database: nrp_A
           3,268,448 sequences; 1,061,185,681 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54WP3) RecName: Full=Probable 39S ribosomal protein L22, mitoc...   265   e-106
CR382124_337(CR382124|pid:none) Kluyveromyces lactis strain NRRL...    37   3e-04
CP000158_2790(CP000158|pid:none) Hyphomonas neptunium ATCC 15444...    41   0.003
(Q5NQ60) RecName: Full=50S ribosomal protein L22;  &AE008692_521...    37   0.004
(A8G757) RecName: Full=50S ribosomal protein L22;  &CP000825_182...    45   0.004
CP000806_4015(CP000806|pid:none) Cyanothece sp. ATCC 51142 circu...    39   0.005
AM778936_87(AM778936|pid:none) Microcystis aeruginosa PCC 7806 g...    38   0.005
(A8GPE5) RecName: Full=50S ribosomal protein L22;  &CP000847_933...    44   0.006
(A3PF42) RecName: Full=50S ribosomal protein L22;  &CP000576_174...    44   0.006
AE016815_75(AE016815|pid:none) Ashbya gossypii (= Eremothecium g...    44   0.006
(A8MLE5) RecName: Full=50S ribosomal protein L22;  &CP000853_489...    40   0.009
(Q318I9) RecName: Full=50S ribosomal protein L22;  &CP000111_179...    44   0.010
(A8GVB9) RecName: Full=50S ribosomal protein L22;  &(Q1RHM6) Rec...    42   0.028
AY701863_1(AY701863|pid:none) Gekko japonicus GekBS042P mRNA, co...    31   0.028
(Q3SZX5) RecName: Full=39S ribosomal protein L22, mitochondrial;...    31   0.028
(B2ITQ0) RecName: Full=50S ribosomal protein L22;  &CP001037_395...    36   0.032
(A8LM59) RecName: Full=50S ribosomal protein L22;  &CP000830_287...    38   0.041
(A8F2E2) RecName: Full=50S ribosomal protein L22;  &CP000683_729...    41   0.047
(A8GT64) RecName: Full=50S ribosomal protein L22;  &(B0BUQ5) Rec...    41   0.047
(Q92GX1) RecName: Full=50S ribosomal protein L22;  &A97825(A9782...    41   0.062
CP001227_760(CP001227|pid:none) Rickettsia peacockii str. Rustic...    41   0.062
(Q68W83) RecName: Full=50S ribosomal protein L22;  &AE017197_619...    41   0.062
GQ231542_15(GQ231542|pid:none) Aureoumbra lagunensis strain CCMP...    34   0.069
(Q9ZCR0) RecName: Full=50S ribosomal protein L22;  &AJ235272_161...    40   0.081
(A4WVK3) RecName: Full=50S ribosomal protein L22;  &CP000661_250...    37   0.090
(Q3Z976) RecName: Full=50S ribosomal protein L22;  &CP000027_468...    40   0.11
(A1B032) RecName: Full=50S ribosomal protein L22;  &CP000489_759...    36   0.12
(Q5LW57) RecName: Full=50S ribosomal protein L22;  &CP000031_475...    37   0.19
(A3PGL6) RecName: Full=50S ribosomal protein L22;  &(Q3J5R7) Rec...    36   0.19
AX399939_1(AX399939|pid:none) Sequence 110 from Patent WO0218424.      32   0.28
(P53881) RecName: Full=54S ribosomal protein L22, mitochondrial;...    39   0.31
BT058152_1(BT058152|pid:none) Salmo salar clone Contig973 39S ri...    29   0.47
(B1VEU1) RecName: Full=50S ribosomal protein L22;  &AM942444_320...    38   0.52
CR382131_977(CR382131|pid:none) Yarrowia lipolytica strain CLIB1...    38   0.52
(Q4JT52) RecName: Full=50S ribosomal protein L22;  &CR931997_182...    38   0.52
(B0C1D8) RecName: Full=50S ribosomal protein L22;  &CP000828_458...    33   0.70
(A4YSJ7) RecName: Full=50S ribosomal protein L22;  &(A5ELM2) Rec...    33   0.70
AK077615_1(AK077615|pid:none) Mus musculus 8 days embryo whole b...    31   0.79
(P0C2C0) RecName: Full=39S ribosomal protein L22, mitochondrial;...    31   0.79
(Q8BU88) RecName: Full=39S ribosomal protein L22, mitochondrial;...    31   0.79
(Q0VFH6) RecName: Full=39S ribosomal protein L22, mitochondrial;...    32   0.79
(A8M524) RecName: Full=50S ribosomal protein L22;  &CP000850_415...    35   0.83
(A4XBP1) RecName: Full=50S ribosomal protein L22;  &CP000667_386...    35   0.83
AY368590_1(AY368590|pid:none) Rupestris stem pitting-associated ...    37   0.89
AK222231_1(AK222231|pid:none) Arabidopsis thaliana mRNA for chlo...    37   0.89
CP001620_1753(CP001620|pid:none) Corynebacterium kroppenstedtii ...    37   0.89
AC037424_7(AC037424|pid:none) Arabidopsis thaliana chromosome 1 ...    37   0.89
(Q5Z1V8) RecName: Full=50S ribosomal protein L22;  &AP006618_744...    36   0.91
CU234118_2900(CU234118|pid:none) Bradyrhizobium sp. ORS278,compl...    32   0.91
CU928175_394(CU928175|pid:none) Zygosaccharomyces rouxii strain ...    34   0.98
(A4QBI6) RecName: Full=50S ribosomal protein L22;  &(Q8NT02) Rec...    36   1.5
(O31160) RecName: Full=50S ribosomal protein L22;  &AF031160_2(A...    36   1.5
(Q890P2) RecName: Full=50S ribosomal protein L22;  &AE015927_233...    36   1.5
(O32986) RecName: Full=50S ribosomal protein L22;  &AL583923_202...    36   1.5
(A3PVC6) RecName: Full=50S ribosomal protein L22;  &CP000580_104...    35   1.7
(A1UBP1) RecName: Full=50S ribosomal protein L22;  &(Q1BDA2) Rec...    35   1.7
DQ102451_1(DQ102451|pid:none) Campylobacter jejuni strain CIT-42...    36   2.0
CP001601_394(CP001601|pid:none) Corynebacterium aurimucosum ATCC...    36   2.0
AK227856_1(AK227856|pid:none) Arabidopsis thaliana mRNA for hypo...    36   2.0
(A0T0I4) RecName: Full=50S ribosomal protein L22, chloroplastic;...    32   2.5
(A9W4Q6) RecName: Full=50S ribosomal protein L22;  &CP000908_213...    35   2.6
(B1Z757) RecName: Full=50S ribosomal protein L22;  &CP001029_209...    35   2.6
(Q8FS76) RecName: Full=50S ribosomal protein L22;  &BA000035_527...    35   2.6
(A0ZZ74) RecName: Full=50S ribosomal protein L22, chloroplastic;...    30   3.0
EU168190_141(EU168190|pid:none) Heterosigma akashiwo strain NIES...    30   3.3
(A9KJI9) RecName: Full=50S ribosomal protein L22;  &CP000885_361...    35   3.4
(Q0ID10) RecName: Full=50S ribosomal protein L22;  &CP000435_423...    35   3.4
(P51060) RecName: Full=Phosphoenolpyruvate carboxylase;         ...    35   3.4
(O74464) RecName: Full=54S ribosomal protein L22, mitochondrial;...    32   3.6
(Q2GED4) RecName: Full=50S ribosomal protein L22;  &CP000237_259...    33   4.2
DQ639762_1(DQ639762|pid:none) Campylobacter jejuni strain 2MJL12...    35   4.4
(A7H651) RecName: Full=50S ribosomal protein L22;  &CP000768_170...    35   4.4
AP007157_341(AP007157|pid:none) Aspergillus oryzae RIB40 genomic...    35   4.4
DQ102450_1(DQ102450|pid:none) Campylobacter jejuni strain CIT-42...    35   4.4
(A2C4Z4) RecName: Full=50S ribosomal protein L22;  &(Q46IR4) Rec...    35   4.4
(A5GVW5) RecName: Full=50S ribosomal protein L22;  &CT978603_212...    35   4.4
FJ392607_1(FJ392607|pid:none) Turicella otitidis strain UCN53 ri...    35   4.4
(Q92QG5) RecName: Full=50S ribosomal protein L22;  &AL591688_136...    34   5.8
DQ102453_1(DQ102453|pid:none) Campylobacter coli strain 98178 ri...    34   5.8
(A6U864) RecName: Full=50S ribosomal protein L22;  &CP000738_984...    34   5.8
DQ102454_1(DQ102454|pid:none) Campylobacter jejuni strain 88375 ...    34   5.8
DQ639758_1(DQ639758|pid:none) Campylobacter coli strain C455 50S...    34   5.8
EU779952_1(EU779952|pid:none) Mycobacterium bolletii strain CIP ...    34   5.8
(Q7V9W7) RecName: Full=50S ribosomal protein L22;  &AE017126_170...    34   5.8
CP000875_4898(CP000875|pid:none) Herpetosiphon aurantiacus ATCC ...    32   7.0
CR954203_597(CR954203|pid:none) Ostreococcus tauri strain OTTH05...    31   7.0
U57794_1(U57794|pid:none) Human immunodeficiency virus type 1 cl...    34   7.5
(Q98N52) RecName: Full=50S ribosomal protein L22;  &BA000012_230...    34   7.5
U57788_1(U57788|pid:none) Human immunodeficiency virus type 1 cl...    34   7.5
CP000633_1356(CP000633|pid:none) Agrobacterium vitis S4 chromoso...    34   7.5
AY924648_1(AY924648|pid:none) HIV-1 isolate 99CD_BDK83 from Demo...    34   7.5
U57792_1(U57792|pid:none) Human immunodeficiency virus type 1 cl...    34   7.5
DQ112244_1(DQ112244|pid:none) Campylobacter jejuni isolate CIT-4...    34   7.5
(A1W1V5) RecName: Full=50S ribosomal protein L22;                      34   7.5
CP001389_1174(CP001389|pid:none) Rhizobium sp. NGR234, complete ...    34   7.5
CP000792_412(CP000792|pid:none) Campylobacter concisus 13826, co...    34   7.5
AM743169_1275(AM743169|pid:none) Stenotrophomonas maltophilia K2...    34   7.6
(A1T4P4) RecName: Full=50S ribosomal protein L22;  &CP000511_129...    34   7.6
CP000916_998(CP000916|pid:none) Thermotoga neapolitana DSM 4359,...    29   8.1
(A0L5X8) RecName: Full=50S ribosomal protein L22;  &CP000471_842...    33   9.9
(B1I8K3) RecName: Full=50S ribosomal protein L22;  &(B2IS45) Rec...    33   9.9
(Q6XYY1) RecName: Full=50S ribosomal protein L22;  &AM285304_107...    33   9.9
AY140892_1(AY140892|pid:none) Streptococcus pneumoniae 50S ribos...    33   9.9

>(Q54WP3) RecName: Full=Probable 39S ribosomal protein L22,
           mitochondrial;          Short=L22mt;
           Short=MRP-L22; Flags: Precursor;
          Length = 237

 Score =  265 bits (677), Expect(2) = e-106
 Identities = 141/172 (81%), Positives = 141/172 (81%)
 Frame = +3

Query: 27  MNNLIKGISNVTLRCVSQTSATSTSLFYIPSITRCLTKKCYGNKSTTILXXXXXXXXXXX 206
           MNNLIKGISNVTLRCVSQTSATSTSLFYIPSITRCLTKKCYGNKSTTIL
Sbjct: 1   MNNLIKGISNVTLRCVSQTSATSTSLFYIPSITRCLTKKCYGNKSTTILNSRINNNNNVN 60

Query: 207 XXXXXTTAASTNIFQQALXXXXXXXXXXXXXXXDNKIVRVSLQKLGYSEWKLMALFKALS 386
                TTAASTNIFQQAL               DNKIVRVSLQKLGYSEWKLMALFKALS
Sbjct: 61  IRQQSTTAASTNIFQQALKETKQEQGEEKVKVEDNKIVRVSLQKLGYSEWKLMALFKALS 120

Query: 387 GLSLREAMAQLSFTEHSPSKKLRGLIKHAAHVAENIKGMDPERLIISQIWAG 542
           GLSLREAMAQLSFTEHSPSKKLRGLIKHAAHVAENIKGMDPERLIISQIWAG
Sbjct: 121 GLSLREAMAQLSFTEHSPSKKLRGLIKHAAHVAENIKGMDPERLIISQIWAG 172

 Score =  143 bits (361), Expect(2) = e-106
 Identities = 66/66 (100%), Positives = 66/66 (100%)
 Frame = +1

Query: 541 GRSFYKRSIMWKGRGQGSTIRKPFCHVSVEIKESEFKDGEKKVGKFGKTNKTFSKYDGNF 720
           GRSFYKRSIMWKGRGQGSTIRKPFCHVSVEIKESEFKDGEKKVGKFGKTNKTFSKYDGNF
Sbjct: 172 GRSFYKRSIMWKGRGQGSTIRKPFCHVSVEIKESEFKDGEKKVGKFGKTNKTFSKYDGNF 231

Query: 721 DHTKEY 738
           DHTKEY
Sbjct: 232 DHTKEY 237

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3268448
Number of Hits to DB: 1,011,289,630
Number of extensions: 17543122
Number of successful extensions: 44543
Number of sequences better than 10.0: 103
Number of HSP's gapped: 44533
Number of HSP's successfully gapped: 142
Length of query: 295
Length of database: 1,061,185,681
Length adjustment: 128
Effective length of query: 167
Effective length of database: 642,824,337
Effective search space: 107351664279
Effective search space used: 107351664279
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)

 psg: 0.69  gvh: 0.50  alm: 0.45  top: 0.53  tms: 0.00  mit: 0.67  mip: 0.12
 nuc: 0.04  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 80.0 %: mitochondrial
	 12.0 %: cytoplasmic
	  8.0 %: nuclear

>> prediction for Contig-U04458-1 is mit