>Contig-U04446-1 (Contig-U04446-1Q) /CSM_Contig/Contig-U04446-1Q.Seq.d
CTGGTACTGCAGTTTTAAAAGCAAATACTATAATTGGTAAAAGATTTGGT
AAGTATAAATTTTTTTTAAAACATCCGTACATACATACATACAATGAATG
ATATTTATTAACAAATTTTTAAATTTTTTAAAATTTTTTTTTTTTTTTTT
TTCTTAGTGAAATTTAATTTAGGTGGAAATGATGGTTTTAACTTTTATTA
TGATTTAAGTTTATATAATTATTTAACTGAAACTGAAGTATATAATATGG
TTGAAGATTTCCAAAGTTTAAAATGTCATGTAAGTATAATATATTTTTAA
TTAAAATTATAATTTTAAAAAATAATAACTTTTTTTTTTTAATATTAATA
ATTATTCATTTTTTAAAATTAGTTTAACCATGGTCTTACTGTTTGNNNNN
NGTTTAGCAATTATAGGAACATGCTTTTTGTTTGGTGTTGTTTTATGGAT
TCCATTTTTTATT

est1=SSA669F,1,464

lvlqf*kqil*lvkdlvsinff*nirtyihtmndiy*QIFKFFKIFFFFFFLVKFNLGGN
DGFNFYYDLSLYNYLTETEVYNMVEDFQSLKCHVSIIYF*lkl*f*kiitfff*y**lfi
f*n*fnhgltvxxxfsnyrnmlfvwccfmdsify

Frame A:
lvlqf*kqil*lvkdlvsinff*nirtyihtmndiy*QIFKFFKIFFFFFFLVKFNLGGN
DGFNFYYDLSLYNYLTETEVYNMVEDFQSLKCHVSIIYF*lkl*f*kiitfff*y**lfi
f*n*fnhgltvxxxfsnyrnmlfvwccfmdsify


Frame B:
wycsfkskyynw*kiw*v*iffktsvhtyiq*mifinkflnflkffffffs**nli*vem
mvltfimi*vyiii*lklkyiiwlkiskv*nvm*v*yifn*nynfkk**lfffninnysf
fkisltmvllfxxxlaiigtcflfgvvlwipffi


Frame C:
gtavlkantiigkrfgkykfflkhpyihtyne*ylltnf*if*nfffffflsei*frwk*
wf*lll*fkfi*lfn*n*si*yg*rfpkfkmsckyniflikiiilknnnfffliliiihf
lklv*pwsyclxxv*ql*ehafclvlfygfhfl

Query= Contig-U04446-1 (Contig-U04446-1Q)
/CSM_Contig/Contig-U04446-1Q.Seq.d
         (463 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U04446-1 (Contig-U04446-1Q) /CSM_Contig/Conti...   515  e-146
Contig-U04513-1 (Contig-U04513-1Q) /CSM_Contig/Conti...    42  5e-04
Contig-U03269-1 (Contig-U03269-1Q) /CSM_Contig/Conti...    42  5e-04
Contig-U14069-1 (Contig-U14069-1Q) /CSM_Contig/Conti...    40  0.002
Contig-U10301-1 (Contig-U10301-1Q) /CSM_Contig/Conti...    40  0.002
Contig-U13992-1 (Contig-U13992-1Q) /CSM_Contig/Conti...    38  0.008
Contig-U13873-1 (Contig-U13873-1Q) /CSM_Contig/Conti...    38  0.008
Contig-U12967-1 (Contig-U12967-1Q) /CSM_Contig/Conti...    38  0.008
Contig-U12570-1 (Contig-U12570-1Q) /CSM_Contig/Conti...    38  0.008
Contig-U05423-1 (Contig-U05423-1Q) /CSM_Contig/Conti...    34  0.13

>Contig-U04446-1 (Contig-U04446-1Q) /CSM_Contig/Contig-U04446-1Q.Seq.d
          Length = 463

 Score =  515 bits (260), Expect = e-146
 Identities = 300/311 (96%)
 Strand = Plus / Plus

                                                                       
Query: 153 cttagtgaaatttaatttaggtggaaatgatggttttaacttttattatgatttaagttt 212
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153 cttagtgaaatttaatttaggtggaaatgatggttttaacttttattatgatttaagttt 212

                                                                       
Query: 213 atataattatttaactgaaactgaagtatataatatggttgaagatttccaaagtttaaa 272
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 213 atataattatttaactgaaactgaagtatataatatggttgaagatttccaaagtttaaa 272

                                                                       
Query: 273 atgtcatgtaagtataatatatttttaattaaaattataattttaaaaaataataacnnn 332
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||   
Sbjct: 273 atgtcatgtaagtataatatatttttaattaaaattataattttaaaaaataataacttt 332

                                                                       
Query: 333 nnnnnnnnaatattaataattattcattttttaaaattagtttaaccatggtcttactgt 392
                   ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 ttttttttaatattaataattattcattttttaaaattagtttaaccatggtcttactgt 392

                                                                       
Query: 393 ttgnnnnnngtttagcaattataggaacatgctttttgtttggtgttgttttatggattc 452
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 ttgnnnnnngtttagcaattataggaacatgctttttgtttggtgttgttttatggattc 452

                      
Query: 453 cattttttatt 463
           |||||||||||
Sbjct: 453 cattttttatt 463


 Score =  216 bits (109), Expect = 2e-56
 Identities = 125/133 (93%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctggtactgcagttttaaaagcaaatactataattggtaaaagatttggtaagtataaan 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 1   ctggtactgcagttttaaaagcaaatactataattggtaaaagatttggtaagtataaat 60

                                                                       
Query: 61  nnnnnnnaaaacatccgtacatacatacatacaatgaatgatatttattaacaaattttt 120
                  |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  tttttttaaaacatccgtacatacatacatacaatgaatgatatttattaacaaattttt 120

                        
Query: 121 aaattttttaaaa 133
           |||||||||||||
Sbjct: 121 aaattttttaaaa 133


 Score = 36.2 bits (18), Expect = 0.032
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 301 ttaaaattataattttaa 318
           ||||||||||||||||||
Sbjct: 318 ttaaaattataattttaa 301


 Score = 28.2 bits (14), Expect = 7.8
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                         
Query: 310 taattttaaaaaat 323
           ||||||||||||||
Sbjct: 371 taattttaaaaaat 358


 Score = 28.2 bits (14), Expect = 7.8
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                         
Query: 358 attttttaaaatta 371
           ||||||||||||||
Sbjct: 323 attttttaaaatta 310


 Score = 28.2 bits (14), Expect = 7.8
 Identities = 20/22 (90%)
 Strand = Plus / Minus

                                 
Query: 290 tatatttttaattaaaattata 311
           |||| |||||||||||| ||||
Sbjct: 311 tataattttaattaaaaatata 290


>Contig-U04513-1 (Contig-U04513-1Q) /CSM_Contig/Contig-U04513-1Q.Seq.d
          Length = 636

 Score = 42.1 bits (21), Expect = 5e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 299 aattaaaattataattttaaa 319
           |||||||||||||||||||||
Sbjct: 67  aattaaaattataattttaaa 87


 Score = 36.2 bits (18), Expect = 0.032
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 301 ttaaaattataattttaa 318
           ||||||||||||||||||
Sbjct: 86  ttaaaattataattttaa 69


 Score = 28.2 bits (14), Expect = 7.8
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                         
Query: 115 atttttaaattttt 128
           ||||||||||||||
Sbjct: 103 atttttaaattttt 116


>Contig-U03269-1 (Contig-U03269-1Q) /CSM_Contig/Contig-U03269-1Q.Seq.d
          Length = 594

 Score = 42.1 bits (21), Expect = 5e-04
 Identities = 28/29 (96%), Gaps = 1/29 (3%)
 Strand = Plus / Plus

                                        
Query: 297 ttaattaaaattataattttaaaaaataa 325
           ||||||||||||| |||||||||||||||
Sbjct: 531 ttaattaaaatta-aattttaaaaaataa 558


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 16,990
Number of Sequences: 6905
Number of extensions: 16990
Number of successful extensions: 2580
Number of sequences better than 10.0: 855
length of query: 463
length of database: 5,674,871
effective HSP length: 16
effective length of query: 447
effective length of database: 5,564,391
effective search space: 2487282777
effective search space used: 2487282777
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)

Query= Contig-U04446-1 (Contig-U04446-1Q) /CSM_Contig/Contig-U04446-1Q.Seq.d
         (463 letters)

Database: ddbj_A
           102,105,510 sequences; 101,790,757,118 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU076375) Dictyostelium discoideum slug cDNA, clone SSA669.      218   e-158  5
(ES854364) WS02761.CR_J18 SS-IL-A-FL-14 Picea sitchensis cDN...    34   0.034  3
(EF677090) Picea sitchensis clone WS02761_J18 unknown mRNA.        34   0.043  3
(AM445400) Vitis vinifera contig VV78X116117.3, whole genome...    46   0.058  2
(EK259428) 1095462097756 Global-Ocean-Sampling_GS-31-01-01-1...    50   0.075  1
(CZ530978) SRAA-aac70c04.b1 Strongyloides ratti whole genome...    50   0.075  1
(AC161808) Mus musculus chromosome 5, clone RP24-386J15, com...    38   0.078  4
(AC160905) Dasypus novemcinctus clone VMRC5-116C3, WORKING D...    42   0.10   5
(AP007837) Lotus japonicus genomic DNA, chromosome 4, clone:...    38   0.12   3
(AC099627) Mus musculus chromosome 7, clone RP24-69E5, compl...    38   0.12   5
(AC204160) Xenopus (Silurana) tropicalis clone ISB1-384A23, ...    46   0.17   3
(AL358892) Mouse DNA sequence from clone RP21-417G6 on chrom...    32   0.18   7
(ER567043) 1093015774276 Global-Ocean-Sampling_GS-36-01-01-2...    34   0.22   2
(BV306059) S236P6111RG8.T0 AlaskanMalamute Canis familiaris ...    48   0.30   1
(AC155791) Bos taurus clone RP42-11J3, WORKING DRAFT SEQUENC...    48   0.30   1
(AC225055) Macropus eugenii clone ME_KBa-223O10, WORKING DRA...    48   0.30   1
(AC202801) Gallus gallus chromosome Z clone CH261-18C7, WORK...    48   0.30   1
(AC167982) Bos taurus clone CH240-212I7, WORKING DRAFT SEQUE...    48   0.30   1
(EJ295588) 1095388034328 Global-Ocean-Sampling_GS-27-01-01-1...    48   0.30   1
(CE787371) tigr-gss-dog-17000330856378 Dog Library Canis lup...    48   0.30   1
(CT775907) Paramecium tetraurelia 5-PRIME EST from clone LK0...    48   0.30   1
(CU915300) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    42   0.35   2
(AC196744) Citrus sinensis clone CSRBBa-010A16, WORKING DRAF...    38   0.42   5
(BX294384) Mouse DNA sequence from clone RP24-230A23 on chro...    36   0.47   3
(EF596886) Drosophila simulans strain y_w Dox region, genomi...    38   0.48   3
(EF596885) Drosophila simulans strain lz_v_f Dox region, gen...    38   0.48   3
(AL929549) Zebrafish DNA sequence from clone CH211-149L22 in...    36   0.55   3
(AL928844) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    36   0.80   4
(AL136366) Human DNA sequence from clone RP11-413C16 on chro...    44   0.89   2
(AC161947) Bos taurus clone CH240-110H13, WORKING DRAFT SEQU...    38   0.91   4
(AC119897) Mus musculus chromosome 1, clone RP24-227F14, com...    44   0.91   3
(ED701729) GM_WBb0044J02.r GM_WBb Glycine max genomic clone ...    34   0.95   3
(CU466385) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    40   0.97   5
(AL929356) Plasmodium falciparum strain 3D7, chromosome 9; s...    40   1.1    7
(AC134226) Rattus norvegicus clone CH230-9L15, *** SEQUENCIN...    38   1.1    5
(AC006280) Plasmodium falciparum chromosome 12 clone PFYAC72...    34   1.1    5
(FP102146) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    32   1.1    6
(AL929586) Zebrafish DNA sequence from clone CH211-188I17.         44   1.1    2
(AC135934) Rattus norvegicus clone CH230-386C4, *** SEQUENCI...    40   1.1    3
(DY682504) TTEA249THC Tetrahymena thermophila EST library, c...    42   1.1    2
(AC119854) Mus musculus chromosome 3, clone RP23-234F9, comp...    40   1.1    4
(CU062600) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    42   1.2    2
(AY446836) Morone saxatilis isolate M6 microsatellite AG25-1...    46   1.2    1
(AY446835) Morone saxatilis isolate T1 microsatellite AG25-1...    46   1.2    1
(AY446834) Morone saxatilis isolate IH3 microsatellite AG25-...    46   1.2    1
(AY446833) Morone saxatilis isolate CW15 microsatellite AG25...    46   1.2    1
(AY446832) Morone saxatilis isolate CH8 microsatellite AG25-...    46   1.2    1
(AY446831) Morone saxatilis isolate MOT4 microsatellite AG25...    46   1.2    1
(AY446830) Morone saxatilis isolate MOT1 microsatellite AG25...    46   1.2    1
(AY446829) Morone saxatilis isolate JC1 microsatellite AG25-...    46   1.2    1
(AY446828) Morone saxatilis isolate E4 microsatellite AG25-1...    46   1.2    1
(AY446827) Morone saxatilis isolate HB1 microsatellite AG25-...    46   1.2    1
(AY446826) Morone saxatilis isolate ML6 microsatellite AG25-...    46   1.2    1
(AY446825) Morone saxatilis isolate MOT17 microsatellite AG2...    46   1.2    1
(AY446824) Morone saxatilis isolate HY5 microsatellite AG25-...    46   1.2    1
(AC169518) Mus musculus chromosome 8, clone RP23-454H8, comp...    46   1.2    1
(AC147567) Mus musculus BAC clone RP23-107E14 from 6, comple...    46   1.2    1
(AC125262) Mus musculus chromosome 8, clone RP24-314K18, com...    46   1.2    1
(AC102790) Mus musculus chromosome 19, clone RP23-321D22, co...    46   1.2    1
(AC006251) Homo sapiens chromosome 17, clone hRPK.692_E_18, ...    46   1.2    1
(DQ280160) Muntiacus muntjak vaginalis clone 058C11, *** SEQ...    46   1.2    1
(AC208279) Nomascus leucogenys leucogenys clone CH271-365H9,...    46   1.2    1
(CT504453) A BAC library has been constructed from cultivar ...    46   1.2    1
(BZ008961) oei26a12.g1 B.oleracea002 Brassica oleracea genom...    46   1.2    1
(AG397546) Mus musculus molossinus DNA, clone:MSMg01-218F10....    46   1.2    1
(DY776132) Sf1F04378-5-1 Spodoptera frugiperda Fat Body cDNA...    46   1.2    1
(CF387963) RTDR1_17_E02.b1_A015 Loblolly pine roots recoveri...    46   1.2    1
(EY888838) TS27-C2-300-024-D02-CT.F Sunki mandarin bark, gre...    46   1.2    1
(AC157250) Dasypus novemcinctus clone VMRC5-182A4, WORKING D...    42   1.2    3
(AC104479) Sus scrofa clone RP44-321O22, complete sequence.        40   1.3    3
(CT027692) Zebrafish DNA sequence from clone DKEY-97L21 in l...    34   1.4    4
(BV269279) S235P616FD6.T0 ItalianGreyhound Canis familiaris ...    36   1.4    2
(CU570845) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    40   1.4    2
(CU633970) Human DNA sequence from clone CH507-32P2 on chrom...    40   1.4    5
(DY682506) TTEA249THE Tetrahymena thermophila EST library, c...    42   1.5    2
(AC166367) Mus musculus chromosome 18 clone RP23-81F9, WORKI...    38   1.5    4
(EY335269) CAWY6909.rev CAWY Helobdella robusta Subtracted E...    38   1.5    2
(AC187751) Pan troglodytes BAC clone CH251-644I24 from chrom...    34   1.6    7
(AP008983) Clostridium phage c-st genomic DNA, complete genome.    36   1.6    5
(CX581976) TTE00016007 Amplicon Express - Conjugative Form T...    42   1.7    2
(AC116984) Dictyostelium discoideum chromosome 2 map 2567470...    34   1.7    8
(AC094662) Rattus norvegicus clone CH230-5F12, WORKING DRAFT...    40   1.8    3
(EY335270) CAWY6909.fwd CAWY Helobdella robusta Subtracted E...    38   1.8    2
(CZ511396) GMW2-49D22a.g1 GMW2 Glycine max genomic, genomic ...    34   1.8    3
(DU924770) 347843 Tomato EcoRI BAC Library Solanum lycopersi...    34   1.8    3
(CZ516892) GMW2-49D22a.g2 GMW2 Glycine max genomic, genomic ...    34   1.8    3
(DY682505) TTEA249THD Tetrahymena thermophila EST library, c...    42   1.9    2
(AC022823) Homo sapiens chromosome 1 clone RP11-76A15 map 1,...    40   1.9    4
(AX458481) Sequence 27 from Patent WO0246454.                      36   1.9    4
(EK392565) 1095469507503 Global-Ocean-Sampling_GS-31-01-01-1...    42   2.0    2
(AC111487) Rattus norvegicus clone CH230-110C24, WORKING DRA...    32   2.1    6
(AE014827) Plasmodium falciparum 3D7 chromosome 14 section 1...    40   2.3    6
(AC187184) Callicebus moloch clone LB5-185M15, WORKING DRAFT...    36   2.3    3
(DQ302100) Vanhornia eucnemidarum mitochondrion, complete ge...    30   2.3    5
(AC205606) Zea mays chromosome 5 clone CH201-428H18; ZMMBBc0...    32   2.3    2
(AE014839) Plasmodium falciparum 3D7 chromosome 11 section 4...    32   2.5    7
(AL928621) Mouse DNA sequence from clone RP23-401G6 on chrom...    40   2.6    3
(CR936217) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    44   2.6    3
(CR846094) Zebrafish DNA sequence from clone CH211-264F16 in...    44   2.6    3
(AC116305) Dictyostelium discoideum chromosome 2 map 1005175...    38   2.7    7
(AC116956) Dictyostelium discoideum chromosome 2 map 1418423...    42   2.7    6
(AC182576) Mimulus guttatus clone MGBa-89I12, complete seque...    36   2.7    4
(AC123677) Mus musculus chromosome 15, clone RP23-275M16, co...    32   2.7    6
(AC226282) Tupaia belangeri clone CH275-454P23, WORKING DRAF...    38   2.7    5
(AC112500) Homo sapiens chromosome 12 clone RP11-11C16, WORK...    42   2.8    5
(CU928037) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    42   2.8    3
(AC099772) Mus Musculus Chromosome 5 RP23-319P12 Strain C57B...    38   2.9    4
(CR388043) Zebrafish DNA sequence *** SEQUENCING CANCELLED *...    36   3.0    3
(BX537340) Zebrafish DNA sequence from clone DKEYP-93A2 in l...    40   3.0    4
(AL034558) Plasmodium falciparum MAL3P2.                           36   3.1    5
(EI504442) PV_GBa0125K05.f PV_GBa Phaseolus vulgaris genomic...    32   3.1    2
(EI496656) PV_GBa0115A19.f PV_GBa Phaseolus vulgaris genomic...    32   3.1    2
(CU972382) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    40   3.1    3
(AC068396) Homo sapiens chromosome 15 clone RP11-348K3 map 1...    34   3.1    5
(AC134572) Mus musculus BAC clone RP23-435M15 from chromosom...    42   3.3    3
(AC124346) Mus musculus BAC clone RP24-460E12 from chromosom...    40   3.3    3
(AC186002) Pan troglodytes BAC clone CH251-86D23 from chromo...    34   3.3    5
(AC160557) Mus musculus chromosome 5 clone RP23-10E7 map 5, ...    34   3.4    5
(AC167948) Sorex araneus clone SA_Ba-94O12, WORKING DRAFT SE...    44   3.6    2
(AC135317) Medicago truncatula clone mth2-10p4, WORKING DRAF...    32   3.7    5
(CR382398) Plasmodium falciparum chromosome 6, complete sequ...    32   3.7    7
(CU928208) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    34   3.7    5
(CU075689) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    38   3.8    4
(AC163694) Mus musculus BAC clone RP24-80O2 from chromosome ...    38   3.8    5
(AC101902) Mus musculus chromosome 1, clone RP24-147M23, com...    36   3.9    3
(CR759881) Zebrafish DNA sequence from clone CH211-165K16 in...    34   3.9    6
(AC074053) Homo sapiens chromosome 16 clone RP11-89C10, WORK...    40   4.0    3
(AQ717656) HS_2147_B1_H08_T7C CIT Approved Human Genomic Spe...    36   4.0    2
(DW013762) w6f13_M13F Myzus persicae, tobacco lineage, whole...    30   4.0    3
(AC015720) Homo sapiens chromosome 15, clone RP11-151H2, com...    36   4.2    5
(AC215983) Latimeria menadoensis clone VMRC4-49D2, *** SEQUE...    38   4.2    2
(AC157739) Xenopus (Silurana) tropicalis clone ISB1-42P24, W...    44   4.3    3
(AP009040) Bombyx mori genomic DNA, chromosome 5, BAC clone:...    36   4.3    3
(AC204488) Salmo salar clone CH214-15I8, WORKING DRAFT SEQUE...    38   4.3    2
(AC177466) Strongylocentrotus purpuratus clone R3-61A3, WORK...    34   4.4    4
(CU855962) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   4.4    2
(CR759807) Zebrafish DNA sequence from clone CH211-176L1 in ...    34   4.4    6
(CU550705) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    44   4.5    2
(AC205220) Pteropus vampyrus clone CH279-135I3, WORKING DRAF...    34   4.5    4
(AC159283) Mus musculus BAC clone RP23-317B21 from chromosom...    40   4.5    3
(CR854917) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    38   4.6    5
(DQ642846) Plasmodium falciparum HB3 apicoplast, complete ge...    34   4.6    5
(CR847998) Zebrafish DNA sequence from clone DKEY-205L13 in ...    44   4.6    1
(BX957298) Zebrafish DNA sequence from clone CH211-268H1 in ...    44   4.6    1
(BX470241) Zebrafish DNA sequence from clone CH211-240J13 in...    44   4.6    1
(BX322646) Zebrafish DNA sequence from clone DKEYP-11A1 in l...    44   4.6    1
(AY248735) Morone saxatilis clone AG25-1#1 microsatellite se...    44   4.6    1
(AL844847) Zebrafish DNA sequence from clone DKEY-13A21 in l...    44   4.6    1
(BV353492) S230P6357FB6.T0 Rottweiler Canis familiaris STS g...    44   4.6    1
(BX294008) Mouse DNA sequence from clone RP23-28K9 on chromo...    44   4.6    1
(AC162174) Mus musculus chromosome 1, clone RP23-306P24, com...    44   4.6    1
(AC159626) Mus musculus BAC clone RP24-209A23 from chromosom...    44   4.6    1
(AC139368) Mus musculus chromosome 1, clone RP24-534C15, com...    44   4.6    1
(AC138386) Mus musculus chromosome 1, clone RP24-433D10, com...    44   4.6    1
(AC206534) Pongo abelii BAC clone CH276-66N12 from chromosom...    44   4.6    1
(AB174640) Macaca fascicularis brain cDNA clone: QtrA-18381,...    44   4.6    1
(AB174588) Macaca fascicularis brain cDNA clone: QtrA-18070,...    44   4.6    1
(BX000509) Oryza sativa chromosome 12, . BAC OJ1085_G07 of l...    44   4.6    1
(AP008218) Oryza sativa (japonica cultivar-group) genomic DN...    44   4.6    1
(AM471655) Vitis vinifera contig VV78X072837.6, whole genome...    44   4.6    1
(AM427402) Vitis vinifera contig VV78X147792.5, whole genome...    44   4.6    1
(EA683842) Sequence 62721 from patent US 7365185.                  44   4.6    1
(EA683754) Sequence 62633 from patent US 7365185.                  44   4.6    1
(Z93341) Human DNA sequence from clone RP1-101A4 on chromoso...    44   4.6    1
(AL160165) Human DNA sequence from clone RP11-143F18 on chro...    44   4.6    1
(AC148477) Homo sapiens 12 BAC RP13-895J2 (Roswell Park Canc...    44   4.6    1
(AC118344) Homo sapiens chromosome 19 clone CTC-425O23, comp...    44   4.6    1
(AC009901) Homo sapiens chromosome 8, clone RP11-98H4, compl...    44   4.6    1
(AC136487) Rattus norvegicus clone CH230-10B4, WORKING DRAFT...    44   4.6    1
(AC125883) Rattus norvegicus clone CH230-459G21, *** SEQUENC...    44   4.6    1
(AC123278) Rattus norvegicus clone CH230-345J7, *** SEQUENCI...    44   4.6    1
(AC122995) Rattus norvegicus clone CH230-13G20, WORKING DRAF...    44   4.6    1
(AC110657) Rattus norvegicus clone CH230-367I9, WORKING DRAF...    44   4.6    1
(AC097733) Rattus norvegicus clone CH230-6H21, WORKING DRAFT...    44   4.6    1
(AC097038) Rattus norvegicus clone CH230-61A17, WORKING DRAF...    44   4.6    1
(CU855852) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   4.6    1
(AC083924) Homo sapiens chromosome 8 clone RP11-90F1 map 8, ...    44   4.6    1
(AC040956) Mus musculus chromosome 11 clone RP23-125L23 map ...    44   4.6    1
(CU013547) Zebrafish DNA sequence *** SEQUENCING CANCELLED *...    44   4.6    1
(CR940352) Theileria annulata genomic DNA chromosome 3.            44   4.6    1
(AC183470) Sorex araneus clone SA_Ba-287N18, WORKING DRAFT S...    44   4.6    1
(AC179717) Strongylocentrotus purpuratus clone R3-1021B4, WO...    44   4.6    1
(AC021926) Homo sapiens clone RP11-29I5, LOW-PASS SEQUENCE S...    44   4.6    1
(AC015488) Homo sapiens clone RP11-20F6, WORKING DRAFT SEQUE...    44   4.6    1
(AC011486) Homo sapiens chromosome 19 clone CTB-166E20, WORK...    44   4.6    1
(AZ661214) 1M0539L10R Mouse 10kb plasmid UUGC1M library Mus ...    44   4.6    1
(AZ135707) Gm_UMb001_123_N15F UMN Soybean BAC Library (pECSB...    44   4.6    1
(FI239018) CccaBb005-I4JF CccABb Cajanus cajan genomic clone...    44   4.6    1
(EI719662) 2B421013O22TF BAC library from breast tumor sampl...    44   4.6    1
(DU952766) 211852 Tomato MboI BAC Library Solanum lycopersic...    44   4.6    1
(DU035326) 17605 Tomato HindIII BAC Library Solanum lycopers...    44   4.6    1
(CZ904989) gy99e05.x1.b.screen Fern methylation filtered lib...    44   4.6    1
(CL343084) RPCI44_276C6.f RPCI-44 Sus scrofa genomic clone R...    44   4.6    1
(CL114446) ISB1-60D22_Sp6.1 ISB1 Xenopus (Silurana) tropical...    44   4.6    1
(DY451612) PCAA-aaa04e03.g1 UCI-12 Podocoryna carnea cDNA 5'...    44   4.6    1
(DY403055) DEVL23A1 Haliotis asinina juvenile mantle SMART c...    44   4.6    1
(DW278084) UI-S-HH0-adg-k-20-0-UI.s1 UI-S-HH0 Euprymna scolo...    44   4.6    1
(DW278055) UI-S-HH0-adg-e-20-0-UI.s1 UI-S-HH0 Euprymna scolo...    44   4.6    1
(DW260039) UI-S-GG1-aax-m-04-0-UI.s1 UI-S-GG1 Euprymna scolo...    44   4.6    1
(DK394375) Drosophila simulans mRNA, third instar larvae ful...    44   4.6    1
(DC884479) Citrus unshiu mRNA, clone: ANT2_0734, 5'-end sequ...    44   4.6    1
(DC440818) Gryllus bimaculatus mRNA, clone:GB00364-26_D03, 5...    44   4.6    1
(DB915660) Idiosepius paradoxus cDNA, clone:Ip_aB_020_B03, 5...    44   4.6    1
(CD118042) ME1-0044T-R155-A05-U.G ME1-0044 Schistosoma manso...    44   4.6    1
(CB554521) MMSP0037_F12 MMSP Macaca mulatta cDNA, mRNA seque...    44   4.6    1
(C95416) Citrus unshiu cDNA, clone: pcMAlM1105-89, 5'-end se...    44   4.6    1
(BI417620) LjNEST33d8r Lotus japonicus nodule library 5 and ...    44   4.6    1
(GE905635) 1112997694445 BABEVCEREB-C-01-1-7KB Papio anubis ...    44   4.6    1
(GE898313) 1112934793964 BABEVCEREB-C-01-1-7KB Papio anubis ...    44   4.6    1
(GE873830) 1112870154227 BABEVCEREB-C-01-1-7KB Papio anubis ...    44   4.6    1
(GE873032) 1112870142707 BABEVCEREB-C-01-1-7KB Papio anubis ...    44   4.6    1
(GE869033) 1112870088406 BABEVCEREB-C-01-1-7KB Papio anubis ...    44   4.6    1
(GD272306) 2113 Haliotis asinina developmental microarray li...    44   4.6    1
(FK930241) EST_lsal_evj_959339 lsalevj mixed_tissue_mixed_st...    44   4.6    1
(FK930240) EST_lsal_evj_933995 lsalevj mixed_tissue_mixed_st...    44   4.6    1
(FG652220) G1142P36RE3.T0 Anolis carolinensis pooled normali...    44   4.6    1
(FD875760) CBHO18756.fwd CBHO Volvox carteri f. nagariensis ...    44   4.6    1
(FD875759) CBHO18756.rev CBHO Volvox carteri f. nagariensis ...    44   4.6    1
(EX448444) Volcani_8_19_B3 Volcani08 Citrus reticulata x Cit...    44   4.6    1
(U59880) Mycoplasma hominis filamentation temperature sensit...    44   4.6    1
(BX005320) Zebrafish DNA sequence from clone DKEY-27P3.            38   4.7    4
(CU019655) Zebrafish DNA sequence from clone DKEY-212N16 in ...    36   4.7    4
(AL021181) Caenorhabditis elegans YAC Y54G11B.                     40   4.7    2
(AC172989) Mus musculus BAC clone RP24-556J6 from chromosome...    38   4.7    2
(AC166005) Colobus guereza clone CH272-465P4, WORKING DRAFT ...    36   4.8    5
(AC234540) Solanum tuberosum chromosome 5 clone RH127E04, **...    36   5.1    3
(AC167818) Mus musculus BAC clone RP23-120O24 from chromosom...    38   5.1    2
(BX469886) Zebrafish DNA sequence from clone CH211-127D20 in...    36   5.4    4
(AC027530) Homo sapiens chromosome 3 clone RP11-389G6 map 3,...    36   5.4    5
(AF063866) Melanoplus sanguinipes entomopoxvirus, complete g...    34   5.5    7
(AC176718) Strongylocentrotus purpuratus clone R3-3095L20, W...    34   5.8    3
(X95276) Plasmodium falciparum complete gene map of plastid-...    34   6.0    4
(CB308458) AGENCOURT_11767063 NICHD_Rh_Ov1 Macaca mulatta cD...    38   6.3    2
(BX649367) Zebrafish DNA sequence from clone CH211-133F22 in...    40   6.4    4
(AE014831) Plasmodium falciparum 3D7 chromosome 10 section 3...    36   6.4    6
(BX322579) Zebrafish DNA sequence from clone CH211-3G21 in l...    34   6.4    5
(AL592430) Human DNA sequence from clone RP11-388P9 on chrom...    40   6.4    3
(FG075323) UI-FF-IF0-abl-o-13-0-UI.r1 Ceratitis capitata emb...    40   6.5    2
(EI385933) POTAU33TF Solanum tuberosum RHPOTKEY BAC ends Sol...    38   6.7    2
(EJ958026) 1093018983259 Global-Ocean-Sampling_GS-30-02-01-1...    40   6.8    2
(EJ445776) 1093015327597 Global-Ocean-Sampling_GS-28-01-01-1...    40   6.9    2
(EY364382) CAWZ9351.fwd CAWZ Helobdella robusta Primary Late...    38   6.9    2
(X55026) Podospora anserina complete mitochondrial genome.         32   7.1    5
(CR394565) Zebrafish DNA sequence *** SEQUENCING CANCELLED *...    38   7.1    4
(AC005505) Plasmodium falciparum chromosome 12 clone PFYAC18...    32   7.1    6
(AC116957) Dictyostelium discoideum chromosome 2 map 1685067...    34   7.2    7
(CC534288) CH240_412J9.T7 CHORI-240 Bos taurus genomic clone...    36   7.2    2
(AC026862) Homo sapiens chromosome 12 clone RP11-325D10, WOR...    38   7.2    3
(FP102399) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    36   7.3    4
(EJ971617) 1093022085856 Global-Ocean-Sampling_GS-30-02-01-1...    40   7.3    2
(AC021451) Homo sapiens chromosome 8, clone RP11-101E19, com...    34   7.4    4
(AC011019) Homo sapiens chromosome 4 clone RP11-90E12, WORKI...    36   7.4    3
(AC121354) Rattus norvegicus chromosome 1 clone RP32-590H16 ...    36   7.5    3
(CU019546) Zebrafish DNA sequence from clone CH73-109J14 in ...    36   7.6    3
(CR391935) Zebrafish DNA sequence from clone DKEY-256K13 in ...    34   7.7    6
(AP003569) Oryza sativa Japonica Group genomic DNA, chromoso...    36   7.8    3
(EJ788050) 1093017362586 Global-Ocean-Sampling_GS-30-02-01-1...    40   7.9    2
(AC132242) Mus musculus BAC clone RP24-413O2 from chromosome...    38   7.9    4
(EJ793960) 1093017390463 Global-Ocean-Sampling_GS-30-02-01-1...    40   7.9    2
(CR382287) Human DNA sequence from clone bP-21216K13 on chro...    34   8.0    5
(CR848814) Zebrafish DNA sequence from clone CH211-167J9 in ...    36   8.0    3
(AL928581) Mouse DNA sequence from clone RP23-318H20 on chro...    34   8.1    4
(CU469574) Zebrafish DNA sequence from clone CH73-230K7 in l...    40   8.1    2
(AM465046) Vitis vinifera contig VV78X005938.6, whole genome...    32   8.2    3
(AC121937) Mus musculus BAC clone RP24-207M20 from 9, comple...    38   8.3    3
(AC127694) Mus musculus BAC clone RP23-235J3 from chromosome...    32   8.3    2
(AC126052) Mus musculus BAC clone RP23-277H6 from 7, complet...    32   8.3    2
(BX901927) Zebrafish DNA sequence from clone CH211-243A20 in...    34   8.4    5
(AC174355) Medicago truncatula chromosome 8 clone mth2-18d3,...    32   8.7    2
(AP010654) Lotus japonicus genomic DNA, chromosome 1, clone:...    32   8.7    2
(GC701559) Sequence 16804 from patent US 6812339.                  40   8.8    3
(CR385074) Zebrafish DNA sequence from clone CH211-258K6 in ...    32   9.1    7
(DQ351941) Verticillium dahliae mitochondrion, complete genome.    30   9.1    6
(AC183549) Pan troglodytes BAC clone CH251-62O3 from chromos...    34   9.1    5
(AC176422) Strongylocentrotus purpuratus clone R3-12F6, WORK...    34   9.1    3
(AC141006) Rattus norvegicus clone CH230-527B5, WORKING DRAF...    36   9.2    5
(AC008669) Homo sapiens chromosome 5 clone CTB-36H16, comple...    36   9.3    4
(AC163096) Mus musculus chromosome 18 clone RP23-261A19 map ...    34   9.4    3
(Z98551) Plasmodium falciparum MAL3P6.                             32   9.4    7
(BX537353) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    40   9.4    4
(CU929535) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    38   9.5    4
(CU302235) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    34   9.6    6
(BX511069) Zebrafish DNA sequence from clone CH211-207I1 in ...    34   9.8    3
(AC109137) Mus musculus clone RP23-34J10, WORKING DRAFT SEQU...    34   10.0   4

>(AU076375) Dictyostelium discoideum slug cDNA, clone SSA669.
          Length = 464

 Score =  218 bits (110), Expect(5) = e-158
 Identities = 110/110 (100%)
 Strand = Plus / Plus


Query: 153 cttagtgaaatttaatttaggtggaaatgatggttttaacttttattatgatttaagttt 212
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153 cttagtgaaatttaatttaggtggaaatgatggttttaacttttattatgatttaagttt 212


Query: 213 atataattatttaactgaaactgaagtatataatatggttgaagatttcc 262
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 213 atataattatttaactgaaactgaagtatataatatggttgaagatttcc 262

 Score =  121 bits (61), Expect(5) = e-158
 Identities = 61/61 (100%)
 Strand = Plus / Plus


Query: 403 tttagcaattataggaacatgctttttgtttggtgttgttttatggattccattttttat 462
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 tttagcaattataggaacatgctttttgtttggtgttgttttatggattccattttttat 462


Query: 463 t 463
           |
Sbjct: 463 t 463

 Score =  117 bits (59), Expect(5) = e-158
 Identities = 59/59 (100%)
 Strand = Plus / Plus


Query: 1  ctggtactgcagttttaaaagcaaatactataattggtaaaagatttggtaagtataaa 59
          |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  ctggtactgcagttttaaaagcaaatactataattggtaaaagatttggtaagtataaa 59

 Score =  107 bits (54), Expect(5) = e-158
 Identities = 54/54 (100%)
 Strand = Plus / Plus


Query: 341 aatattaataattattcattttttaaaattagtttaaccatggtcttactgttt 394
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 aatattaataattattcattttttaaaattagtttaaccatggtcttactgttt 394

 Score = 95.6 bits (48), Expect(5) = e-158
 Identities = 48/48 (100%)
 Strand = Plus / Plus


Query: 68  aaaacatccgtacatacatacatacaatgaatgatatttattaacaaa 115
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68  aaaacatccgtacatacatacatacaatgaatgatatttattaacaaa 115

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 102105510
Number of Hits to DB: 529,525,318
Number of extensions: 39723669
Number of successful extensions: 4349175
Number of sequences better than 10.0: 287
Length of query: 463
Length of database: 101,790,757,118
Length adjustment: 23
Effective length of query: 440
Effective length of database: 99,442,330,388
Effective search space: 43754625370720
Effective search space used: 43754625370720
X1: 11 (21.8 bits)
S2: 21 (42.1 bits)

Query= Contig-U04446-1 (Contig-U04446-1Q) /CSM_Contig/Contig-U04446-1Q.Seq.d
         (463 letters)

Database: nrp_A
           3,268,448 sequences; 1,061,185,681 total letters

Searching..................................................done

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3268448
Number of Hits to DB: 496,180,398
Number of extensions: 7428407
Number of successful extensions: 14275
Number of sequences better than 10.0: 0
Number of HSP's gapped: 14259
Number of HSP's successfully gapped: 0
Length of query: 154
Length of database: 1,061,185,681
Length adjustment: 116
Effective length of query: 38
Effective length of database: 682,045,713
Effective search space: 25917737094
Effective search space used: 25917737094
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 29 (15.8 bits)

 psg: 1.05  gvh: 0.46  alm: 0.30  top: 0.27  tms: 0.07  mit: 0.22  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 1.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 28.0 %: endoplasmic reticulum
	 20.0 %: cytoplasmic
	 20.0 %: mitochondrial
	 16.0 %: nuclear
	  4.0 %: Golgi
	  4.0 %: plasma membrane
	  4.0 %: vesicles of secretory system
	  4.0 %: extracellular, including cell wall

>> prediction for Contig-U04446-1 is end