>Contig-U04426-1 (Contig-U04426-1Q) /CSM_Contig/Contig-U04426-1Q.Seq.d
AAAAAAAAAAAAAACACCACACTCGCCCATATAGTTCAAATAATTTAACA
AACTATTTATGTATATTTATATATACTTTACTACTATTGTACAAACGATT
GTCATAGTATCTTAGTATAACAAAGATCATTTTTATATATTTATTATTAA
ACGAATAATTTCATACAGACACAACTTTATATATTAATTAAAAAAAAAGA
AAAAATGGATTCAAGATATTCAGATTTAATCCGAAAAACCATTTCAAAGA
TATCACAATGTATATTATTATCAAGAGTTGAAACTTCATCAGTTTCAAGA
AGGGTTAATAAAACTTTTCATTTAGAAACAGAGGAATCAGACATACATAG
ACAGGAAATTGATAGAATAGTACTCAAAAATGATATGAGAATTTTATTTG
TTATAGAAATTCATTTTGATGAAAATGTTGGTTTAGGTTTANATNCAATT
GTTGAATCTTGGAGAATAATATTTGATCCAAGAGAGATTGATAATTCAGT
TGAGTTACCTAAATTTTATAAAAATGTTATTATTTTAATTAGAACAATTT
ATGCAATGCTTAGAAATATACCTTGCTATTCTCTATTTAAAAATTTTTCA
AAAAATAGATCAGCAACTTGTTCAGTTAATTACCAACTAAGAGTTTGTGA
TTCACAATCAATTACAACTCCTTCATTTCCATTATGTAAATATATTATTA
TTAAAACTA

est1=SSA579E,1,710

kkkknttlahivqii*qtiyvylyilyyyctndchsilv*qrsflyiyy*TNNFIQTQLY
ILIKKKEKMDSRYSDLIRKTISKISQCILLSRVETSSVSRRVNKTFHLETEESDIHRQEI
DRIVLKNDMRILFVIEIHFDENVGLGLXXIVESWRIIFDPREIDNSVELPKFYKNVIILI
RTIYAMLRNIPCYSLFKNFSKNRSATCSVNYQLRVCDSQSITTPSFPLCKYIIIKT

Frame A:
kkkknttlahivqii*qtiyvylyilyyyctndchsilv*qrsflyiyy*TNNFIQTQLY
ILIKKKEKMDSRYSDLIRKTISKISQCILLSRVETSSVSRRVNKTFHLETEESDIHRQEI
DRIVLKNDMRILFVIEIHFDENVGLGLXXIVESWRIIFDPREIDNSVELPKFYKNVIILI
RTIYAMLRNIPCYSLFKNFSKNRSATCSVNYQLRVCDSQSITTPSFPLCKYIIIKT


Frame B:
kkkktphspi*fk*fnklfmyiyiyfttivqtivivs*ynkdhfyifiikriisyrhnfi
y*lkkkkkwiqdiqi*sekpfqryhnvyyyqelklhqfqegliklfi*kqrnqtyidrkl
ie*yskmi*efyll*kfilmkmlv*vxxqllnlge*yliqerliiqlsylnfikmllf*l
eqfmqcleiylailylkifqkidqqlvqlitn*efvihnqlqllhfhyvnilllkl


Frame C:
kkkkhhtrpyssnnltnylcifiytllllykrls*ylsitkiifiylllne*fhtdttly
in*kkrkngfkifrfnpknhfkditmyiiiks*nfisfkkg**nfsfrnrgirht*tgn*
*nstqk*yenficyrnsf**kcwfrfxxnc*ilenni*skrd**fs*vt*il*kcyyfn*
nnlcna*kytllfsi*kffkk*isnlfs*lptksl*ftinynsfisim*iyyy*n

Query= Contig-U04426-1 (Contig-U04426-1Q)
/CSM_Contig/Contig-U04426-1Q.Seq.d
         (709 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U04426-1 (Contig-U04426-1Q) /CSM_Contig/Conti...   987  0.0
Contig-U13415-1 (Contig-U13415-1Q) /CSM_Contig/Conti...    38  0.013
Contig-U13386-1 (Contig-U13386-1Q) /CSM_Contig/Conti...    38  0.013
Contig-U12816-1 (Contig-U12816-1Q) /CSM_Contig/Conti...    38  0.013
Contig-U12799-1 (Contig-U12799-1Q) /CSM_Contig/Conti...    38  0.013
Contig-U04454-1 (Contig-U04454-1Q) /CSM_Contig/Conti...    38  0.013
Contig-U14415-1 (Contig-U14415-1Q) /CSM_Contig/Conti...    36  0.050
Contig-U13176-1 (Contig-U13176-1Q) /CSM_Contig/Conti...    36  0.050
Contig-U12238-1 (Contig-U12238-1Q) /CSM_Contig/Conti...    36  0.050
Contig-U09137-1 (Contig-U09137-1Q) /CSM_Contig/Conti...    36  0.050

>Contig-U04426-1 (Contig-U04426-1Q) /CSM_Contig/Contig-U04426-1Q.Seq.d
          Length = 709

 Score =  987 bits (498), Expect = 0.0
 Identities = 504/504 (100%)
 Strand = Plus / Plus

                                                                       
Query: 206 tggattcaagatattcagatttaatccgaaaaaccatttcaaagatatcacaatgtatat 265
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 tggattcaagatattcagatttaatccgaaaaaccatttcaaagatatcacaatgtatat 265

                                                                       
Query: 266 tattatcaagagttgaaacttcatcagtttcaagaagggttaataaaacttttcatttag 325
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 tattatcaagagttgaaacttcatcagtttcaagaagggttaataaaacttttcatttag 325

                                                                       
Query: 326 aaacagaggaatcagacatacatagacaggaaattgatagaatagtactcaaaaatgata 385
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 aaacagaggaatcagacatacatagacaggaaattgatagaatagtactcaaaaatgata 385

                                                                       
Query: 386 tgagaattttatttgttatagaaattcattttgatgaaaatgttggtttaggtttanatn 445
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 tgagaattttatttgttatagaaattcattttgatgaaaatgttggtttaggtttanatn 445

                                                                       
Query: 446 caattgttgaatcttggagaataatatttgatccaagagagattgataattcagttgagt 505
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 caattgttgaatcttggagaataatatttgatccaagagagattgataattcagttgagt 505

                                                                       
Query: 506 tacctaaattttataaaaatgttattattttaattagaacaatttatgcaatgcttagaa 565
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 tacctaaattttataaaaatgttattattttaattagaacaatttatgcaatgcttagaa 565

                                                                       
Query: 566 atataccttgctattctctatttaaaaatttttcaaaaaatagatcagcaacttgttcag 625
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 atataccttgctattctctatttaaaaatttttcaaaaaatagatcagcaacttgttcag 625

                                                                       
Query: 626 ttaattaccaactaagagtttgtgattcacaatcaattacaactccttcatttccattat 685
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 ttaattaccaactaagagtttgtgattcacaatcaattacaactccttcatttccattat 685

                                   
Query: 686 gtaaatatattattattaaaacta 709
           ||||||||||||||||||||||||
Sbjct: 686 gtaaatatattattattaaaacta 709


 Score =  347 bits (175), Expect = 1e-95
 Identities = 175/175 (100%)
 Strand = Plus / Plus

                                                                       
Query: 15  caccacactcgcccatatagttcaaataatttaacaaactatttatgtatatttatatat 74
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15  caccacactcgcccatatagttcaaataatttaacaaactatttatgtatatttatatat 74

                                                                       
Query: 75  actttactactattgtacaaacgattgtcatagtatcttagtataacaaagatcattttt 134
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75  actttactactattgtacaaacgattgtcatagtatcttagtataacaaagatcattttt 134

                                                                  
Query: 135 atatatttattattaaacgaataatttcatacagacacaactttatatattaatt 189
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135 atatatttattattaaacgaataatttcatacagacacaactttatatattaatt 189


>Contig-U13415-1 (Contig-U13415-1Q) /CSM_Contig/Contig-U13415-1Q.Seq.d
          Length = 860

 Score = 38.2 bits (19), Expect = 0.013
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                      
Query: 59  atgtatatttatatatactttactact 85
           ||||||||||||||||| |||| ||||
Sbjct: 220 atgtatatttatatataatttattact 194


>Contig-U13386-1 (Contig-U13386-1Q) /CSM_Contig/Contig-U13386-1Q.Seq.d
          Length = 309

 Score = 38.2 bits (19), Expect = 0.013
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 127 tcatttttatatatttatt 145
           |||||||||||||||||||
Sbjct: 81  tcatttttatatatttatt 63


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 26,621
Number of Sequences: 6905
Number of extensions: 26621
Number of successful extensions: 2500
Number of sequences better than 10.0: 274
length of query: 709
length of database: 5,674,871
effective HSP length: 16
effective length of query: 693
effective length of database: 5,564,391
effective search space: 3856122963
effective search space used: 3856122963
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)

Query= Contig-U04426-1 (Contig-U04426-1Q) /CSM_Contig/Contig-U04426-1Q.Seq.d
         (709 letters)

Database: ddbj_A
           102,105,510 sequences; 101,790,757,118 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(U81000) Dictyostelium discoideum unknown protein mRNA, prom...   940   0.0    2
(C83911) Dictyostelium discoideum slug cDNA, clone SSA579.        854   0.0    1
(AU072711) Dictyostelium discoideum slug cDNA, clone SSA579.      347   e-106  2
(AC005140) Plasmodium falciparum chromosome 12 clone PFYACB8...    44   2e-06  11
(AL929358) Plasmodium falciparum strain 3D7, chromosome 9; s...    40   1e-05  13
(AX392733) Sequence 23 from Patent WO0212526.                      32   3e-05  9
(AR707080) Sequence 23 from patent US 6933145.                     32   3e-05  9
(AE014829) Plasmodium falciparum 3D7 chromosome 10 section 1...    42   7e-05  11
(AE014847) Plasmodium falciparum 3D7 chromosome 12, section ...    38   2e-04  14
(AL929354) Plasmodium falciparum strain 3D7, chromosome 5, s...    38   2e-04  9
(AJ511533) Candida glabrata complete mitochondrial genome.         36   2e-04  7
(AE014838) Plasmodium falciparum 3D7 chromosome 11 section 3...    38   4e-04  12
(AE014848) Plasmodium falciparum 3D7 chromosome 12, section ...    36   5e-04  12
(AE014851) Plasmodium falciparum 3D7 chromosome 12, section ...    44   5e-04  12
(CP001056) Clostridium botulinum B str. Eklund 17B, complete...    44   6e-04  17
(AE014840) Plasmodium falciparum 3D7 chromosome 11 section 5...    44   8e-04  10
(AL034557) Plasmodium falciparum MAL4P1.                           38   9e-04  10
(AC006280) Plasmodium falciparum chromosome 12 clone PFYAC72...    42   0.001  10
(AL844509) Plasmodium falciparum chromosome 13.                    38   0.001  9
(AL929359) Plasmodium falciparum strain 3D7, chromosome 9; s...    44   0.002  10
(AE014824) Plasmodium falciparum 3D7 chromosome 14 section 9...    36   0.002  11
(AE014816) Plasmodium falciparum 3D7 chromosome 14 section 1...    36   0.002  10
(AL929353) Plasmodium falciparum strain 3D7, chromosome 5, s...    38   0.002  10
(AE014834) Plasmodium falciparum 3D7 chromosome 10 section 6...    36   0.002  13
(AE014833) Plasmodium falciparum 3D7 chromosome 10 section 5...    36   0.002  10
(AL929351) Plasmodium falciparum strain 3D7, chromosome 5, s...    36   0.003  10
(AC005504) Plasmodium falciparum chromosome 12, *** SEQUENCI...    36   0.003  9
(AM698041) Vanderwaltozyma polyspora partial mitochondrial g...    34   0.003  7
(AE014852) Plasmodium falciparum 3D7 chromosome 12, section ...    36   0.003  10
(AE014825) Plasmodium falciparum 3D7 chromosome 14 section 1...    34   0.004  12
(AC004157) Plasmodium falciparum chromosome 12 clone PFYAC29...    36   0.004  10
(AL844506) Plasmodium falciparum chromosome  7.                    44   0.004  9
(AX348714) Sequence 172 from Patent WO0202807.                     40   0.005  5
(AX346119) Sequence 1190 from Patent WO0200928.                    40   0.005  5
(AX344753) Sequence 178 from Patent WO0200927.                     40   0.005  5
(AX344303) Sequence 150 from Patent WO0200926.                     40   0.005  5
(AM437835) Vitis vinifera contig VV78X016314.2, whole genome...    38   0.006  4
(AC006279) Plasmodium falciparum chromosome 12 clone PFYAC61...    32   0.007  9
(AE014843) Plasmodium falciparum 3D7 chromosome 11 section 8...    36   0.007  12
(AC189211) Brassica rapa subsp. pekinensis clone KBrB008C11,...    42   0.007  6
(AX458635) Sequence 181 from Patent WO0246454.                     46   0.007  4
(AE014842) Plasmodium falciparum 3D7 chromosome 11 section 7...    34   0.007  10
(DQ229107) Chara vulgaris chloroplast, complete genome.            34   0.007  10
(CR382399) Plasmodium falciparum chromosome 6, complete sequ...    38   0.008  10
(AF250284) Amsacta moorei entomopoxvirus, complete genome.         32   0.009  13
(AL929356) Plasmodium falciparum strain 3D7, chromosome 9; s...    40   0.010  8
(AE014830) Plasmodium falciparum 3D7 chromosome 10 section 2...    40   0.013  7
(CU633161) H.numata DNA sequence from clone AEHN-43D2.             40   0.018  7
(CR382398) Plasmodium falciparum chromosome 6, complete sequ...    38   0.019  9
(AE014831) Plasmodium falciparum 3D7 chromosome 10 section 3...    44   0.020  10
(AC004153) Plasmodium falciparum chromosome 12 clone PFYAC81...    34   0.020  10
(AC116305) Dictyostelium discoideum chromosome 2 map 1005175...    36   0.022  13
(AL034556) Plasmodium falciparum MAL3P5.                           46   0.023  9
(AE001398) Plasmodium falciparum 3D7 chromosome 2 section 35...    30   0.025  6
(BX649484) Zebrafish DNA sequence from clone CH211-197H24 in...    40   0.026  6
(AL929352) Plasmodium falciparum strain 3D7, chromosome 5, s...    36   0.028  11
(AC004709) Plasmodium falciparum chromosome 12, *** SEQUENCI...    38   0.032  10
(CU104699) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    38   0.032  7
(AL929364) Plasmodium falciparum chromosome 8, unmapped contig.    40   0.040  4
(AE001437) Clostridium acetobutylicum ATCC 824, complete gen...    36   0.040  18
(AC004710) Plasmodium falciparum chromosome 12, *** SEQUENCI...    36   0.040  9
(AC092794) Homo sapiens 12 BAC RP11-295I5 (Roswell Park Canc...    44   0.042  4
(AC134049) Medicago truncatula clone mth2-21j3, complete seq...    34   0.042  6
(CP000016) Candidatus Blochmannia pennsylvanicus str. BPEN, ...    40   0.043  14
(AL929357) Plasmodium falciparum strain 3D7, chromosome 9; s...    38   0.044  12
(AE014849) Plasmodium falciparum 3D7 chromosome 12, section ...    36   0.057  10
(AE014836) Plasmodium falciparum 3D7 chromosome 11 section 1...    36   0.057  10
(AC117176) Dictyostelium discoideum chromosome 2 map 5018074...    32   0.057  10
(AE014841) Plasmodium falciparum 3D7 chromosome 11 section 6...    34   0.060  10
(Z81034) Caenorhabditis elegans Cosmid C15C6.                      36   0.061  3
(L36899) Saccharomyces cerevisiae mitochondrion origin of re...    34   0.062  4
(AC180782) Strongylocentrotus purpuratus clone R3-3077B23, W...    36   0.067  6
(CR450850) Zebrafish DNA sequence from clone CH211-113J3 in ...    48   0.068  7
(BX571979) Zebrafish DNA sequence from clone DKEYP-51C11 in ...    50   0.071  5
(AC116163) Homo sapiens chromosome 15 clone RP11-324B9 map 1...    36   0.075  7
(AY217738) Eimeria tenella apicoplast, complete genome.            38   0.077  6
(BS000055) Pan troglodytes chromosome 22 clone:RP43-136G21, ...    46   0.078  6
(AE014826) Plasmodium falciparum 3D7 chromosome 14 section 1...    32   0.083  12
(AP006372) Lotus japonicus genomic DNA, chromosome 1, clone:...    38   0.084  5
(CT573313) H.melpomene DNA sequence from clone AEHM-46M10.         34   0.084  7
(AC117070) Dictyostelium discoideum chromosome 2 map 2097701...    30   0.091  11
(FJ171325) Polystoechotes punctatus mitochondrion, complete ...    38   0.098  4
(AC006836) Arabidopsis thaliana chromosome 2 clone F19B11 ma...    38   0.10   6
(AE014828) Plasmodium falciparum 3D7 chromosome 14 section 1...    36   0.10   10
(AC232537) Brassica rapa subsp. pekinensis clone KBrH001K17,...    38   0.10   7
(AC218083) Tachyglossus aculeatus clone TA_Ba-247A23, WORKIN...    44   0.11   6
(AC130189) Pan troglodytes clone RP43-84O14, WORKING DRAFT S...    50   0.12   1
(AM621757) Entamoeba invadens IP1 GSS, clone inv070h10.p1k.        50   0.12   1
(AM617693) Entamoeba invadens IP1 GSS, clone inv102a12.q1k.        50   0.12   1
(BZ390594) EINCL27TR EI_10_12_KB Entamoeba invadens genomic ...    50   0.12   1
(BZ037692) oeh82f04.b1 B.oleracea002 Brassica oleracea genom...    50   0.12   1
(BJ641308) Xenopus laevis cDNA clone:XL209j24, 3' end.             50   0.12   1
(AC233100) Medicago truncatula clone mth2-132a8, WORKING DRA...    34   0.12   8
(AY534144) Saprolegnia ferax strain ATCC 36051 mitochondion,...    32   0.12   7
(AX346928) Sequence 1999 from Patent WO0200928.                    36   0.12   4
(Z98551) Plasmodium falciparum MAL3P6.                             34   0.12   9
(AE014819) Plasmodium falciparum 3D7 chromosome 14 section 4...    40   0.13   7
(CR382401) Plasmodium falciparum chromosome 6, complete sequ...    36   0.13   11
(AY955840) Paracoccidioides brasiliensis strain Pb18 mitocho...    38   0.14   6
(CR382400) Plasmodium falciparum chromosome 6, complete sequ...    38   0.14   12
(AY653733) Acanthamoeba polyphaga mimivirus, complete genome.      34   0.14   16
(AE014839) Plasmodium falciparum 3D7 chromosome 11 section 4...    34   0.16   10
(AC116960) Dictyostelium discoideum chromosome 2 map complem...    38   0.16   10
(AC005507) Plasmodium falciparum chromosome 12 clone PFYACB8...    36   0.16   11
(AE014818) Plasmodium falciparum 3D7 chromosome 14 section 3...    32   0.17   10
(AE014832) Plasmodium falciparum 3D7 chromosome 10 section 4...    38   0.17   13
(AL035476) Plasmodium falciparum MAL4P3.                           38   0.17   11
(AC138625) Homo sapiens chromosome 16 clone RP11-23E19, comp...    38   0.18   5
(AC133133) Homo sapiens chromosome 5 clone RP11-1153G23, com...    42   0.18   3
(AE014820) Plasmodium falciparum 3D7 chromosome 14 section 5...    34   0.18   14
(AE014817) Plasmodium falciparum 3D7 chromosome 14 section 2...    34   0.18   10
(AJ011856) Saccharomyces cerevisiae complete mitochondrial g...    36   0.18   9
(AY654900) Kluyveromyces lactis mitochondrion, complete genome.    32   0.18   7
(AC006281) Plasmodium falciparum chromosome 12 clone PFYACB8...    34   0.18   11
(AC155647) Mus musculus 6 BAC RP24-151A23 (Roswell Park Canc...    40   0.19   2
(AX392734) Sequence 24 from Patent WO0212526.                      30   0.19   8
(AR707081) Sequence 24 from patent US 6933145.                     30   0.19   8
(AC137788) Homo sapiens chromosome 16 clone RP11-207M10, com...    38   0.20   5
(AP009247) Candidatus Vesicomyosocius okutanii HA DNA, compl...    34   0.20   15
(AF538053) Monosiga brevicollis mitochondrion, complete genome.    36   0.21   8
(BX548002) Zebrafish DNA sequence from clone CH211-170I2 in ...    44   0.21   4
(AC157707) Xenopus (Silurana) tropicalis clone ISB1-23N18, W...    38   0.22   4
(AC004688) Plasmodium falciparum chromosome 12 clone PFYAC69...    32   0.22   12
(Z98547) Plasmodium falciparum MAL3P3.                             34   0.22   8
(FP236158) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    34   0.23   4
(AL049180) Plasmodium falciparum DNA *** SEQUENCING IN PROGR...    36   0.23   10
(EI464108) PV_GBa0068P22.r PV_GBa Phaseolus vulgaris genomic...    42   0.23   2
(AC211034) Solanum lycopersicum chromosome 6 clone C06HBa006...    40   0.24   5
(CT573117) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    42   0.24   6
(AC067956) Homo sapiens BAC clone RP11-140F14 from 2, comple...    42   0.26   5
(AZ631416) 1M0485N03R Mouse 10kb plasmid UUGC1M library Mus ...    38   0.26   2
(AZ350744) 1M0088K23F Mouse 10kb plasmid UUGC1M library Mus ...    42   0.26   2
(AC149902) Strongylocentrotus purpuratus clone R3-12E1, WORK...    36   0.26   10
(AC116091) Rattus norvegicus clone CH230-377N11, *** SEQUENC...    38   0.26   2
(AE017308) Mycoplasma mobile 163K complete genome.                 32   0.26   15
(CR049617) Forward strand read from insert in 3'HPRT inserti...    38   0.26   2
(CR238163) Forward strand read from insert in 5'HPRT inserti...    38   0.27   2
(AC165949) Mus musculus BAC clone RP24-376M8 from chromosome...    42   0.27   4
(CR259884) Forward strand read from insert in 5'HPRT inserti...    38   0.28   2
(AP010260) Solanum lycopersicum DNA, chromosome 8, clone: C0...    34   0.29   5
(AM601851) Entamoeba invadens IP1 GSS, clone inv014a01.q1k.        36   0.30   2
(CR194424) Forward strand read from insert in 5'HPRT inserti...    38   0.30   2
(AC175291) Bos taurus clone CH240-239F2, WORKING DRAFT SEQUE...    38   0.30   4
(CR184980) Forward strand read from insert in 5'HPRT inserti...    38   0.31   2
(EI036757) hha0001dg08.g1 hha Oryza australiensis genomic cl...    38   0.31   2
(CN553970) tae34h04.x1 Hydra EST Darmstadt I Hydra magnipapi...    36   0.32   2
(CN777274) taf65b11.x1 Hydra EST Darmstadt I Hydra magnipapi...    36   0.32   2
(AL096782) Plasmodium falciparum DNA *** SEQUENCING IN PROGR...    34   0.32   6
(AJ294725) Astasia longa complete chloroplast genome.              30   0.32   7
(AC157826) Pan troglodytes BAC clone CH251-276A2 from chromo...    44   0.33   5
(AC069435) Homo sapiens 3 BAC RP11-384L1 (Roswell Park Cance...    38   0.34   4
(BH440408) BOHJF46TF BOHJ Brassica oleracea genomic clone BO...    36   0.35   3
(CS468878) Sequence 69 from Patent EP1748080.                      34   0.37   10
(CS419355) Sequence 69 from Patent WO2006094836.                   34   0.37   10
(FH153299) CHO_OF3066xc04r1.ab1 CHO_OF3 Nicotiana tabacum ge...    36   0.38   3
(AP000568) Homo sapiens genomic DNA, chromosome 21q21.1-q21....    46   0.39   5
(EU004203) Saccharomyces cerevisiae YJM789 mitochondrion, co...    36   0.39   8
(CR450724) Zebrafish DNA sequence from clone DKEY-168I4 in l...    38   0.40   5
(AL672129) Zebrafish DNA sequence from clone BUSM1-104F18 in...    38   0.41   6
(FH153215) CHO_OF3066xc04f1.ab1 CHO_OF3 Nicotiana tabacum ge...    36   0.41   3
(FH055942) CHO_OF3479xo14r1.ab1 CHO_OF3 Nicotiana tabacum ge...    36   0.42   3
(CZ535479) SRAA-aac97e01.g1 Strongyloides ratti whole genome...    36   0.42   3
(AL844501) Plasmodium falciparum strain 3D7, chromosome 1.         36   0.43   10
(AL353153) Human DNA sequence from clone RP5-1000G17 on chro...    34   0.44   6
(ET733745) CHO_OF170xh22f1.ab1 CHO_OF Nicotiana tabacum geno...    36   0.45   3
(AE014850) Plasmodium falciparum 3D7 chromosome 12, section ...    38   0.46   10
(AE014821) Plasmodium falciparum 3D7 chromosome 14 section 6...    34   0.46   10
(CU914545) Zebrafish DNA sequence from clone CH1073-192N5 in...    48   0.46   1
(AL928962) Mouse DNA sequence from clone RP23-455A4 on chrom...    48   0.46   1
(AC102572) Mus musculus chromosome 18, clone RP23-234A9, com...    48   0.46   1
(DQ673259) Jasminum subhumile psaA-psbB fragment, chloroplast.     48   0.46   1
(CQ582836) Sequence 10594 from Patent WO0171042.                   48   0.46   1
(CQ582824) Sequence 10582 from Patent WO0171042.                   48   0.46   1
(AY069029) Drosophila melanogaster GH01257 full length cDNA.       48   0.46   1
(AE014297) Drosophila melanogaster chromosome 3R, complete s...    48   0.46   1
(AC008284) Drosophila melanogaster clone BACR03M22, complete...    48   0.46   1
(AC007946) Drosophila melanogaster, chromosome 3R, region 96...    48   0.46   1
(AC151194) Bos taurus clone CH240-197H14, WORKING DRAFT SEQU...    48   0.46   1
(AC105064) Mus musculus clone RP24-503J11, WORKING DRAFT SEQ...    48   0.46   1
(CT956033) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    48   0.46   1
(CT573368) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    48   0.46   1
(AC181754) Strongylocentrotus purpuratus clone R3-1036N20, W...    48   0.46   1
(AC174188) Strongylocentrotus purpuratus clone R3-1110E22, W...    48   0.46   1
(AC017235) Drosophila melanogaster, *** SEQUENCING IN PROGRE...    48   0.46   1
(FI484826) CH322-82N09.x CHORI-322 Drosophila melanogaster g...    48   0.46   1
(FI470101) CH322-53K13.x CHORI-322 Drosophila melanogaster g...    48   0.46   1
(EW966208) BRHL_01_L17_T7 Headlice composite library with al...    48   0.46   1
(EV587986) Dmel_neb_011280_0081_2222 D. melanogaster - 454 s...    48   0.46   1
(AE009817) Pyrobaculum aerophilum strain IM2 section 72 of 2...    48   0.46   1
(AE009441) Pyrobaculum aerophilum str. IM2, complete genome.       48   0.46   1
(CP000123) Mycoplasma capricolum subsp. capricolum ATCC 2734...    32   0.47   18
(CL038307) CH216-45K23_Sp6.1 CH216 Xenopus (Silurana) tropic...    36   0.47   3
(AM643026) Entamoeba dispar GSS, clone dispar9g05.q1k.             36   0.47   3
(DN137312) ACAE-aaa07c20.b3 Hydra EST UCI 5 Hydra magnipapil...    36   0.47   2
(AL929355) Plasmodium falciparum strain 3D7, chromosome 9; s...    38   0.49   13
(AC234761) Brassica rapa subsp. pekinensis chromosome Linkag...    38   0.51   7
(AC025881) Homo sapiens chromosome 8, clone RP11-393K19, com...    38   0.51   6
(BX004988) Zebrafish DNA sequence from clone CH211-79C4 in l...    36   0.51   7
(AC181899) Strongylocentrotus purpuratus clone R3-1015I01, W...    40   0.52   4
(AC010284) Homo sapiens chromosome 5 clone CTC-558E23, compl...    44   0.55   2
(AE001367) Plasmodium falciparum 3D7 chromosome 2 section 4 ...    30   0.55   6
(AC107303) Homo sapiens chromosome 3 clone RP11-595I22, WORK...    36   0.56   7
(BX908731) Zebrafish DNA sequence from clone DKEY-19F23 in l...    36   0.56   6
(BX890567) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    38   0.58   5
(AL008970) Plasmodium falciparum MAL3P4.                           34   0.58   8
(CT583713) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    40   0.61   5
(DN136847) ACAB-aaa78i15.g1 Hydra UCI6- barcoded EST's Hydra...    36   0.62   2
(FC691551) CAXX2658.rev CAXX Lottia gigantea from male gonad...    34   0.66   3
(AL034560) Plasmodium falciparum MAL3P8.                           34   0.66   7
(AC146244) Pan troglodytes BAC clone RP43-27M14 from chromos...    36   0.67   5
(AC191179) Cavia porcellus clone CH234-171N19, WORKING DRAFT...    32   0.67   9
(CU024872) Zebrafish DNA sequence from clone DKEY-58J5 in li...    38   0.69   5
(AC231671) Solanum tuberosum chromosome 11 clone RH179O17, *...    32   0.69   9
(BB976236) Plasmodium berghei str. ANKA cDNA clone: OK006100...    38   0.70   2
(AF466146) Melipona bicolor mitochondrial genome, partial se...    32   0.70   6
(BP114636) Plasmodium berghei strain ANKA cDNA, clone: FCPb3...    38   0.70   2
(BQ451225) PfESToab05c10.y1 Plasmodium falciparum 3D7 asexua...    38   0.71   3
(AL844507) Plasmodium falciparum chromosome 8.                     44   0.71   9
(CN554257) tae34h04.y1 Hydra EST Darmstadt I Hydra magnipapi...    36   0.74   2
(CP000963) Clostridium botulinum A3 str. Loch Maree plasmid ...    40   0.75   9
(BB979227) Plasmodium berghei str. ANKA cDNA clone: OK009296...    38   0.76   2
(AL034558) Plasmodium falciparum MAL3P2.                           44   0.76   11
(AC182015) Atelerix albiventris clone LB4-233O5, WORKING DRA...    34   0.77   7
(AL161547) Arabidopsis thaliana DNA chromosome 4, contig fra...    32   0.78   10
(CP001078) Clostridium botulinum E3 str. Alaska E43, complet...    46   0.78   14
(AC182493) Pan troglodytes BAC clone CH251-215H7 from chromo...    38   0.78   4
(AC094334) Rattus norvegicus clone CH230-3J9, *** SEQUENCING...    44   0.78   4
(AC144545) Homo sapiens 3 BAC RP13-784A19 (Roswell Park Canc...    42   0.79   3
(DW127942) CLSX4468.b1_G14.ab1 CLS(XYZ) lettuce sativa Lactu...    36   0.80   2
(AC116330) Dictyostelium discoideum chromosome 2 map 3191214...    34   0.81   9
(CO373025) tah63c12.x1 Hydra EST UCI 5 Hydra magnipapillata ...    36   0.82   2
(AC149185) Papio anubis clone RP41-39N5, WORKING DRAFT SEQUE...    40   0.82   2
(AL626804) Zebrafish DNA sequence from clone RP71-1H10 in li...    42   0.83   6
(AC007763) Homo sapiens clone RP11-110D17, WORKING DRAFT SEQ...    38   0.83   4
(BB981801) Plasmodium berghei str. ANKA cDNA clone: OK012111...    38   0.83   2
(CF258902) j180-f Juvenile-specific Acetabularia acetabulum ...    42   0.84   2
(AF063866) Melanoplus sanguinipes entomopoxvirus, complete g...    38   0.87   10
(CU856498) Zebrafish DNA sequence from clone CH1073-331F6 in...    36   0.87   5
(BF296829) 043PbD05 Pb cDNA #17, Tommaso Pace, Marta Ponzi, ...    38   0.88   2
(BU001555) QGG28C17.yg.ab1 QG_EFGHJ lettuce serriola Lactuca...    36   0.89   2
(FC576326) CAXP12231.rev CAXP Lottia gigantea from head, foo...    34   0.90   3
(AC005505) Plasmodium falciparum chromosome 12 clone PFYAC18...    36   0.91   9
(AF205395) Ichthyophthirius multifiliis clone 13 histone H3 ...    32   0.92   3
(AC200628) Pongo abelii BAC clone CH276-522L16 from chromoso...    40   0.92   3
(EC749283) POE00005781 PL(light) Polytomella parva cDNA, mRN...    42   0.92   2
(AC025935) Homo sapiens clone RP11-593P4, WORKING DRAFT SEQU...    36   0.93   5
(BH453233) BOHSH56TF BOHS Brassica oleracea genomic clone BO...    36   0.93   3
(AC104392) Homo sapiens chromosome 8 clone CTD-3077I1 map 8,...    36   0.94   4
(AC116986) Dictyostelium discoideum chromosome 2 map 2234041...    36   0.94   11
(AG680006) Macaca fuscata fuscata DNA, clone: MSB2-108M19_F,...    36   0.94   2
(EJ774107) 1092980701142 Global-Ocean-Sampling_GS-30-02-01-1...    38   0.94   3
(D31785) Pichia canadensis mitochondrial genomic DNA, comple...    30   0.96   6
(AC189142) Cavia porcellus clone CH234-346K10, WORKING DRAFT...    34   0.97   2
(CU695257) Brassica rapa subsp. pekinensis clone KBrB022J01,...    38   0.97   4
(AC216298) Cavia porcellus clone CH234-412D5, WORKING DRAFT ...    34   0.97   2
(AC166864) Oryctolagus cuniculus clone LB1-153C17, WORKING D...    44   0.98   3
(AL929565) Mouse DNA sequence from clone RP23-454N16 on chro...    36   0.99   2
(AC189984) Cavia porcellus clone CH234-368O15, WORKING DRAFT...    34   0.99   2
(BH925075) odh32e05.b1 B.oleracea002 Brassica oleracea genom...    36   0.99   2
(AL162723) Human DNA sequence from clone RP13-428K23 on chro...    44   1.0    7
(AL034559) Plasmodium falciparum MAL3P7.                           34   1.0    11
(BX890624) Zebrafish DNA sequence from clone DKEY-9I9 in lin...    38   1.0    7
(AC232534) Brassica rapa subsp. pekinensis clone KBrB091E13,...    38   1.0    5
(AP009337) Lotus japonicus genomic DNA, clone:LjT38B12, TM2118.    38   1.0    3
(AC091729) Homo sapiens BAC clone RP13-580H13 from 7, comple...    42   1.0    3
(BV459779) qut13h10.g1 Clint Pan troglodytes verus STS genom...    36   1.0    2
(DC224320) Plasmodium berghei strain ANKA cDNA clone:MZ00880...    38   1.0    2
(AC106655) Rattus norvegicus clone CH230-67O14, WORKING DRAF...    36   1.1    7
(AG756711) Macaca fuscata fuscata DNA, clone: MSB2-224L06_F,...    36   1.1    2
(AC191885) Rhesus Macaque  BAC CH250-518D17 () complete sequ...    34   1.1    7
(AC116551) Dictyostelium discoideum chromosome 2 map complem...    36   1.1    7
(AF033037) Plasmodium falciparum merozoite surface protein 4...    30   1.1    5
(EI475994) PV_GBa0086I09.r PV_GBa Phaseolus vulgaris genomic...    36   1.1    2
(CR241271) Reverse strand read from insert in 5'HPRT inserti...    40   1.1    2
(CR936285) Zebrafish DNA sequence from clone CH73-35G18 in l...    36   1.1    5
(FC785261) CBGC15681.fwd CBGC Lottia gigantea 15h 18h embryo...    34   1.1    3
(FC785260) CBGC15681.rev CBGC Lottia gigantea 15h 18h embryo...    34   1.1    3
(BX927164) Zebrafish DNA sequence from clone DKEY-27P2 in li...    42   1.1    3
(AC115592) Dictyostelium discoideum chromosome 2 map 1-12595...    30   1.1    11
(AC008825) Homo sapiens chromosome 5 clone CTD-2134P3, compl...    44   1.1    7
(BV484898) S215P61504FH8.T0 Clara Pan troglodytes troglodyte...    36   1.1    2
(AP005672) Physcomitrella patens subsp. patens chloroplast D...    34   1.1    7
(EY316254) CAWX26518.rev CAWX Helobdella robusta Primary Ear...    32   1.1    3
(ER691952) SB_BBc98-E22.F SB_BBc Sorghum bicolor genomic 5',...    40   1.2    2
(DX530075) GH_MBb0022I05f GH_MBb Gossypium hirsutum genomic ...    40   1.2    2
(AM488295) Vitis vinifera contig VV78X062803.19, whole genom...    36   1.2    4
(L36887) Saccharomyces cerevisiae mitochondrion transfer RNA...    32   1.2    4
(CR974474) H.melpomene DNA sequence from clone AEHM-41C10.         30   1.2    9
(AC084811) Homo sapiens chromosome 18 clone CTD-2557B14 map ...    36   1.2    6
(EK227186) 1095460162580 Global-Ocean-Sampling_GS-31-01-01-1...    36   1.2    2
(EJ628094) 1092963247305 Global-Ocean-Sampling_GS-29-01-01-1...    36   1.2    2
(FP016230) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    32   1.2    5
(DQ642846) Plasmodium falciparum HB3 apicoplast, complete ge...    34   1.2    6
(CS468877) Sequence 68 from Patent EP1748080.                      34   1.2    9
(CS419354) Sequence 68 from Patent WO2006094836.                   34   1.2    9
(AC202297) Medicago truncatula clone mth2-192p9, WORKING DRA...    40   1.2    8
(AC104380) Homo sapiens chromosome 8, clone CTD-2342C1, comp...    36   1.3    7
(AP009180) Candidatus Carsonella ruddii PV DNA, complete gen...    38   1.3    7
(AX344569) Sequence 20 from Patent WO0200932.                      34   1.3    9
(AF040974) Plasmodium vivax small subunit ribosomal RNA gene...    42   1.3    2
(CU468578) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    34   1.3    7
(BX571825) Zebrafish DNA sequence from clone DKEY-158E13 in ...    38   1.3    8
(BX890565) Zebrafish DNA sequence from clone CH211-250G22.         38   1.3    3
(AX344550) Sequence 1 from Patent WO0200932.                       32   1.3    11
(EI464836) PV_GBa0070B11.f PV_GBa Phaseolus vulgaris genomic...    38   1.3    3
(AC134151) Rattus norvegicus clone CH230-29M15, *** SEQUENCI...    40   1.3    3
(DU046890) 151765 Tomato HindIII BAC Library Solanum lycoper...    36   1.3    2
(CU457792) Zebrafish DNA sequence from clone DKEY-180K7 in l...    32   1.4    9
(BX324115) Zebrafish DNA sequence from clone DKEYP-70E6 in l...    36   1.4    5
(BH735136) BOMBA60TF BO_2_3_KB Brassica oleracea genomic clo...    36   1.4    3
(AC189389) Brassica rapa subsp. pekinensis clone KBrB053J19,...    42   1.4    7
(AX344559) Sequence 10 from Patent WO0200932.                      32   1.4    10
(AE014306) Homo sapiens chromosome 13q34 schizophrenia regio...    36   1.4    8
(AC229818) Monodelphis domestica clone VMRC18-126N23, WORKIN...    36   1.4    6
(AL606504) Human DNA sequence from clone RP11-358K2 on chrom...    42   1.4    2
(AC110153) Mus musculus clone RP23-150E20, LOW-PASS SEQUENCE...    46   1.5    3
(BX936306) Zebrafish DNA sequence from clone DKEY-16J12 in l...    36   1.5    5
(AC027490) Homo sapiens chromosome 21 clone RP11-494B17 map ...    36   1.5    6
(AE014846) Plasmodium falciparum 3D7 chromosome 12, section ...    36   1.5    8
(AM449059) Vitis vinifera contig VV78X190857.11, whole genom...    34   1.5    3
(AC173905) Bos taurus clone CH240-47C24, WORKING DRAFT SEQUE...    44   1.5    7
(AZ671483) ENTFW35TR Entamoeba histolytica Sheared DNA Entam...    38   1.5    3
(BH162535) ENTSC53TF Entamoeba histolytica Sheared DNA Entam...    38   1.6    3
(BI815625) PfESToaa30h01.y1 Plasmodium falciparum 3D7 asexua...    34   1.6    3
(CU928590) S.lycopersicum DNA sequence from clone SL_MboI-80...    32   1.6    6
(AE014845) Plasmodium falciparum 3D7 chromosome 12, section ...    30   1.6    12
(BH159716) ENTQZ40TF Entamoeba histolytica Sheared DNA Entam...    38   1.6    3
(AX346200) Sequence 1271 from Patent WO0200928.                    32   1.7    5
(AC024977) Homo sapiens chromosome 2 clone RP11-433C15 map 2...    42   1.7    6
(AZ676150) ENTFA82TR Entamoeba histolytica Sheared DNA Entam...    38   1.7    3
(AC189263) Brassica rapa subsp. pekinensis clone KBrB021P17,...    32   1.7    6
(AC145277) Xenopus (Silurana) tropicalis clone CH216-164I7, ...    38   1.7    6
(AZ678382) ENTGV46TR Entamoeba histolytica Sheared DNA Entam...    38   1.7    3
(AG494504) Mus musculus molossinus DNA, clone:MSMg01-393C03....    36   1.7    3
(AE001402) Plasmodium falciparum 3D7 chromosome 2 section 39...    34   1.7    5
(BX957254) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    34   1.8    5
(AC134121) Rattus norvegicus clone CH230-24M24, *** SEQUENCI...    44   1.8    5
(CR962121) Medicago truncatula chromosome 5 clone mte1-77f5,...    40   1.8    5
(AC114263) Dictyostelium discoideum chromosome 2 map 215673-...    30   1.8    9
(CR388369) Zebrafish DNA sequence from clone CH211-207N23 in...    46   1.8    1
(AL627129) Zebrafish DNA sequence from clone RP71-1F1 in lin...    46   1.8    1
(BV217381) S233P6266FD6.T0 LabradorRetriever Canis familiari...    46   1.8    1
(AC153852) Mus musculus 10 BAC RP23-136F8 (Roswell Park Canc...    46   1.8    1
(AC131172) Rattus norvegicus 5 BAC CH230-12K15 (Children's H...    46   1.8    1
(AC122738) Mus musculus chromosome 1, clone RP23-68E17, comp...    46   1.8    1
(AC118202) Mus musculus chromosome 10, clone RP23-378J3, com...    46   1.8    1
(BS000054) Pan troglodytes chromosome 22 clone:RP43-147F06, ...    46   1.8    1
(AC146562) Medicago truncatula clone mth2-14d10, complete se...    46   1.8    1
(AC146331) Medicago truncatula clone mth2-7h18, complete seq...    46   1.8    1
(CU457723) Pig DNA sequence from clone CH242-28L6 on chromos...    46   1.8    1
(U34363) Plasmodium falciparum CTRP gene, complete cds.            46   1.8    1
(AP001677) Homo sapiens genomic DNA, chromosome 21q, section...    46   1.8    1
(AL049714) Human DNA sequence from clone RP1-181J22 on chrom...    46   1.8    1
(AC152767) Bos taurus clone CH240-10O16, WORKING DRAFT SEQUE...    46   1.8    1
(AC128939) Rattus norvegicus clone CH230-434L13, WORKING DRA...    46   1.8    1
(AC122070) Rattus norvegicus clone CH230-182I8, *** SEQUENCI...    46   1.8    1
(AC112861) Rattus norvegicus clone CH230-304O23, *** SEQUENC...    46   1.8    1
(AC106345) Rattus norvegicus clone CH230-156G13, *** SEQUENC...    46   1.8    1
(AC099447) Rattus norvegicus clone CH230-203H4, WORKING DRAF...    46   1.8    1
(AC096419) Rattus norvegicus clone CH230-24D13, WORKING DRAF...    46   1.8    1
(FP102115) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    46   1.8    1
(FP015853) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    46   1.8    1
(CU914264) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    46   1.8    1
(CU914180) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    46   1.8    1
(CU469480) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    46   1.8    1
(AC068132) Homo sapiens chromosome 21 clone RP11-753B2, WORK...    46   1.8    1
(AC037464) Homo sapiens chromosome 11 clone RP11-195B5 map 1...    46   1.8    1
(CU467027) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    46   1.8    1
(AC218199) Bos taurus clone CH240-291A21, WORKING DRAFT SEQU...    46   1.8    1
(AC209968) Zea mays chromosome 1 clone CH201-434P13; ZMMBBc0...    46   1.8    1
(AC205372) Zea mays chromosome 1 clone CH201-17F9; ZMMBBc001...    46   1.8    1
(AC195388) Zea mays chromosome 8 clone CH201-122B10; ZMMBBc0...    46   1.8    1
(AC170006) Bos taurus clone CH240-243D11, WORKING DRAFT SEQU...    46   1.8    1
(AC023857) Homo sapiens chromosome 11 clone RP11-640A19 map ...    46   1.8    1
(AK040514) Mus musculus 0 day neonate thymus cDNA, RIKEN ful...    46   1.8    1
(DX830199) ZMMBLb0010C23.r ZMMBLb Zea mays genomic clone ZMM...    46   1.8    1
(DH771820) Rattus norvegicus DNA, BAC clone: RNB1-357A02, 5'...    46   1.8    1
(CT545844) A BAC library has been constructed from cultivar ...    46   1.8    1
(CG461787) PUFXJ92TDC ZM_0.6_1.0_KB Zea mays genomic clone Z...    46   1.8    1
(CG461750) PUFXJ92TBC ZM_0.6_1.0_KB Zea mays genomic clone Z...    46   1.8    1
(CG118538) PUIFZ70TD ZM_0.6_1.0_KB Zea mays genomic clone ZM...    46   1.8    1
(CE389962) tigr-gss-dog-17000334448766 Dog Library Canis lup...    46   1.8    1
(EE689756) AGENCOURT_87941457 NIH_ZGC_27 Danio rerio cDNA cl...    46   1.8    1
(EB861251) 4701786 ZF03 Danio rerio cDNA clone 2196243, mRNA...    46   1.8    1
(DN570174) 91583933 Sea Urchin primary mesenchyme cell cDNA ...    46   1.8    1
(EX630830) 255478039 Pea aphid whole body normalized full le...    46   1.8    1
(DN137659) ACAE-aaa07c20.g1 Hydra EST UCI 5 Hydra magnipapil...    36   1.8    2
(AC219681) Bos taurus clone CH240-326A11, WORKING DRAFT SEQU...    40   1.9    6
(AM285310) Spiroplasma citri GII3-3X chromosome, contig Cont...    38   2.0    4
(AC172756) Bos taurus clone CH240-305C4, WORKING DRAFT SEQUE...    40   2.0    5
(AC090621) Homo sapiens chromosome 18, clone RP11-396N11, co...    38   2.0    6
(AF165818) Guillardia theta nucleomorph chromosome 1, comple...    30   2.0    10
(DT994212) CNB171-E02.y1d-s SHGC-CNB Gasterosteus aculeatus ...    40   2.0    2
(BX511213) Zebrafish DNA sequence from clone CH211-232G2 in ...    36   2.1    5
(AC019232) Homo sapiens chromosome 5 clone RP11-575G10, WORK...    40   2.1    4
(AL049184) Plasmodium falciparum DNA *** SEQUENCING IN PROGR...    34   2.1    10
(AC181281) Strongylocentrotus purpuratus clone R3-4015O04, W...    36   2.2    5
(BM165037) EST567560 PyBS Plasmodium yoelii yoelii cDNA clon...    36   2.2    2
(BG603716) EST502806 Plasmodium yoelii sporozoite cDNA Plasm...    36   2.2    2
(AC194649) Pan troglodytes BAC clone CH251-375J21 from chrom...    44   2.2    5
(CR753838) Zebrafish DNA sequence from clone DKEY-189H5 in l...    34   2.3    9
(AC116924) Dictyostelium discoideum chromosome 2 map 6357117...    34   2.3    7
(AC216452) Populus trichocarpa clone POP018-D02, complete se...    38   2.3    9
(AL772279) Zebrafish DNA sequence from clone CH211-191N13 in...    44   2.3    6
(AC233695) Solanum lycopersicum chromosome 2 clone C02HBa020...    36   2.3    8
(AC233643) Solanum lycopersicum chromosome 2 clone C02HBa020...    36   2.3    8
(AC208314) Populus trichocarpa clone JGIACSB17-H15, complete...    38   2.4    3
(FB596650) Sequence 12373 from Patent WO2004081186.                32   2.4    10
(AG515883) Mus musculus molossinus DNA, clone:MSMg01-421D04....    28   2.4    4
(AC230144) Bos taurus clone CH240-519L22, WORKING DRAFT SEQU...    36   2.4    6
(AC185988) Pan troglodytes BAC clone CH251-398L15 from chrom...    34   2.4    6
(DL005682) NUCLEIC ACID PROBES AND NUCLEIC ACID ANALOG PROBES.     36   2.4    7
(CS459607) Sequence 88 from Patent WO2006117596.                   36   2.4    7
(BX323599) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    34   2.5    7
(AC202588) Medicago truncatula clone mth2-45g3, WORKING DRAF...    32   2.5    7
(BD142886) Method of simple and quick determination of base ...    30   2.5    4
(AX399614) Sequence 18 from Patent EP1191108.                      30   2.5    4
(AR634816) Sequence 18 from patent US 6852489.                     30   2.5    4
(AM443351) Vitis vinifera, whole genome shotgun sequence, co...    40   2.5    2
(DJ051080) HIGH EFFICIENCY GENE TRANSFER AND EXPRESSION IN M...    36   2.5    2
(DI106006) HIGH EFFICIENCY GENE TRANSFER AND EXPRESSION IN M...    36   2.5    2
(CS083938) Sequence 121 from Patent WO2005040377.                  36   2.5    2
(GM713407) Sequence 121 from Patent EP1959011.                     36   2.5    2
(AC112679) Mus musculus chromosome 1, clone RP23-199H14, com...    34   2.5    7
(AM470755) Vitis vinifera contig VV78X146244.2, whole genome...    40   2.5    2
(AL352979) Human chromosome 14 DNA sequence BAC R-368P15 of ...    40   2.5    4
(AL109814) Plasmodium falciparum DNA *** SEQUENCING IN PROGR...    34   2.5    5
(AC011747) Homo sapiens BAC clone RP11-434B12 from 2, comple...    36   2.5    3
(BD142887) Method of simple and quick determination of base ...    30   2.5    4
(AX399615) Sequence 19 from Patent EP1191108.                      30   2.5    4
(AR634817) Sequence 19 from patent US 6852489.                     30   2.5    4
(AC215372) Solanum lycopersicum chromosome 2 clone C02HBa006...    36   2.6    6
(BD142885) Method of simple and quick determination of base ...    30   2.6    4
(AX399613) Sequence 17 from Patent EP1191108.                      30   2.6    4
(AR634815) Sequence 17 from patent US 6852489.                     30   2.6    4
(AC130186) Atelerix albiventris clone LB4-244I20, complete s...    36   2.6    6
(DX539985) GH_MBb0072N15r GH_MBb Gossypium hirsutum genomic ...    38   2.6    3
(ET430139) MUGQ_CH252P427M06Sp6_CP818_019 CHORI-252 Vervet M...    36   2.6    3
(FK709990) Red06D07M13F Red male Aedes aegypti cDNA, mRNA se...    30   2.6    3
(CR853293) Zebrafish DNA sequence from clone CH211-81J7 in l...    38   2.6    6
(FP102415) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    36   2.7    4
(CR293501) Zebrafish DNA sequence from clone DKEYP-86F7 in l...    38   2.7    6
(AC008418) Homo sapiens chromosome 5 clone CTC-289G17, LOW-P...    42   2.7    2
(DJ051033) HIGH EFFICIENCY GENE TRANSFER AND EXPRESSION IN M...    36   2.7    2
(DI107295) HIGH EFFICIENCY GENE TRANSFER AND EXPRESSION IN M...    36   2.7    2
(CS083891) Sequence 74 from Patent WO2005040377.                   36   2.7    2
(GM713360) Sequence 74 from Patent EP1959011.                      36   2.7    2
(AC006278) Plasmodium falciparum chromosome 12 clone PFYAC34...    34   2.7    8
(GP053084) Sequence 470 from patent US 7473531.                    44   2.7    2
(BC016769) Homo sapiens thioredoxin domain containing 1, mRN...    44   2.7    2
(CU861509) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    38   2.7    4
(AC232475) Brassica rapa subsp. pekinensis clone KBrB030K23,...    42   2.7    6
(CD077366) MA3-0001U-V201-D09-U.B MA3-0001 Schistosoma manso...    38   2.7    2
(DN202741) Cm_mx0_19g07_SP6 Green Shore Crab Multiple Tissue...    36   2.8    2
(AE014822) Plasmodium falciparum 3D7 chromosome 14 section 7...    34   2.8    11
(AC140819) Homo sapiens chromosome 5 clone RP11-734E9, WORKI...    42   2.8    3
(CC262481) CH261-167M9_Sp6.1 CH261 Gallus gallus genomic clo...    32   2.8    3
(CD147117) ML1-0002T-M115-B10-U.G ML1-0002 Schistosoma manso...    38   2.8    2
(BX842699) Zebrafish DNA sequence from clone CH211-281K12 in...    40   2.8    5
(EF568108) Glossina pallidipes salivary gland hypertrophy vi...    34   2.8    8
(AC117075) Dictyostelium discoideum chromosome 2 map 5201047...    36   2.9    11
(AL627308) Human DNA sequence from clone RP11-211A18 on chro...    34   2.9    5
(AX344573) Sequence 24 from Patent WO0200932.                      32   2.9    12
(AC188200) Gossypium hirsutum chromosome UNKNOWN clone ZMMBB...    32   2.9    5
(AC174151) Homo sapiens chromosome 4 clone WI2-1953O14, comp...    42   2.9    2
(CD147127) ML1-0002T-M115-C09-U.G ML1-0002 Schistosoma manso...    38   2.9    2
(AF447563) Plasmodium falciparum 838 merozoite surface prote...    30   2.9    4
(AF447553) Plasmodium falciparum K1 merozoite surface protei...    30   2.9    4
(AF447555) Plasmodium falciparum T9/94 merozoite surface pro...    30   2.9    4
(AF447556) Plasmodium falciparum 806 merozoite surface prote...    30   2.9    4
(AF447561) Plasmodium falciparum 828 merozoite surface prote...    30   3.0    4
(AF447562) Plasmodium falciparum 837 merozoite surface prote...    30   3.0    4
(AF447558) Plasmodium falciparum 814 merozoite surface prote...    30   3.0    4
(AF447570) Plasmodium falciparum G23 merozoite surface prote...    30   3.0    4
(AF447554) Plasmodium falciparum MAD20 merozoite surface pro...    30   3.0    4
(AF447571) Plasmodium falciparum 059 merozoite surface prote...    30   3.0    4
(AF447564) Plasmodium falciparum 841 merozoite surface prote...    30   3.0    4
(AF447573) Plasmodium falciparum M290 merozoite surface prot...    30   3.0    4
(AF447559) Plasmodium falciparum 815 merozoite surface prote...    30   3.0    4
(FK709970) Red06B04M13F Red male Aedes aegypti cDNA, mRNA se...    38   3.0    2
(AF447567) Plasmodium falciparum 844 merozoite surface prote...    30   3.0    4
(AF447572) Plasmodium falciparum 098 merozoite surface prote...    30   3.0    4
(CD096582) ME1-0009T-L085-B06-U.B ME1-0009 Schistosoma manso...    38   3.0    2
(Z83218) Caenorhabditis elegans Cosmid C31A11.                     40   3.0    4
(EA013908) Sequence 81 from patent US 7129338.                     44   3.0    2
(CS051195) Sequence 81 from Patent EP1514933.                      44   3.0    2
(BD123532) Secretory protein or membrane protein.                  44   3.0    2
(AX136159) Sequence 81 from Patent EP1067182.                      44   3.0    2
(AK075395) Homo sapiens cDNA PSEC0085 fis, clone NT2RP200647...    44   3.0    2
(AF447565) Plasmodium falciparum 842 merozoite surface prote...    30   3.0    4
(GC673106) Sequence 29 from patent US 7449549.                     44   3.0    2
(GC592142) Sequence 29 from patent US 7427667.                     44   3.0    2
(GC585668) Sequence 29 from patent US 7425605.                     44   3.0    2
(GC516439) Sequence 29 from patent US 7408034.                     44   3.0    2
(GC502798) Sequence 29 from patent US 7399824.                     44   3.0    2
(GC493316) Sequence 29 from patent US 7393917.                     44   3.0    2
(GC489126) Sequence 29 from patent US 7390886.                     44   3.0    2
(GC480844) Sequence 29 from patent US 7388073.                     44   3.0    2
(GC475902) Sequence 29 from patent US 7385033.                     44   3.0    2
(FB721624) Sequence 5 from Patent WO2007021423.                    44   3.0    2

>(U81000) Dictyostelium discoideum unknown protein mRNA, promotor
           region and complete cds.
          Length = 2711

 Score =  940 bits (474), Expect(2) = 0.0
 Identities = 478/480 (99%)
 Strand = Plus / Plus


Query: 206 tggattcaagatattcagatttaatccgaaaaaccatttcaaagatatcacaatgtatat 265
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 237 tggattcaagatattcagatttaatccgaaaaaccatttcaaagatatcacaatgtatat 296


Query: 266 tattatcaagagttgaaacttcatcagtttcaagaagggttaataaaacttttcatttag 325
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 tattatcaagagttgaaacttcatcagtttcaagaagggttaataaaacttttcatttag 356


Query: 326 aaacagaggaatcagacatacatagacaggaaattgatagaatagtactcaaaaatgata 385
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 aaacagaggaatcagacatacatagacaggaaattgatagaatagtactcaaaaatgata 416


Query: 386 tgagaattttatttgttatagaaattcattttgatgaaaatgttggtttaggtttanatn 445
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 417 tgagaattttatttgttatagaaattcattttgatgaaaatgttggtttaggtttaaata 476


Query: 446 caattgttgaatcttggagaataatatttgatccaagagagattgataattcagttgagt 505
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 caattgttgaatcttggagaataatatttgatccaagagagattgataattcagttgagt 536


Query: 506 tacctaaattttataaaaatgttattattttaattagaacaatttatgcaatgcttagaa 565
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 tacctaaattttataaaaatgttattattttaattagaacaatttatgcaatgcttagaa 596


Query: 566 atataccttgctattctctatttaaaaatttttcaaaaaatagatcagcaacttgttcag 625
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 597 atataccttgctattctctatttaaaaatttttcaaaaaatagatcagcaacttgttcag 656


Query: 626 ttaattaccaactaagagtttgtgattcacaatcaattacaactccttcatttccattat 685
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 657 ttaattaccaactaagagtttgtgattcacaatcaattacaactccttcatttccattat 716

 Score =  347 bits (175), Expect(2) = 0.0
 Identities = 175/175 (100%)
 Strand = Plus / Plus


Query: 15  caccacactcgcccatatagttcaaataatttaacaaactatttatgtatatttatatat 74
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46  caccacactcgcccatatagttcaaataatttaacaaactatttatgtatatttatatat 105


Query: 75  actttactactattgtacaaacgattgtcatagtatcttagtataacaaagatcattttt 134
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 106 actttactactattgtacaaacgattgtcatagtatcttagtataacaaagatcattttt 165


Query: 135 atatatttattattaaacgaataatttcatacagacacaactttatatattaatt 189
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 166 atatatttattattaaacgaataatttcatacagacacaactttatatattaatt 220

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 102105510
Number of Hits to DB: 1,095,604,296
Number of extensions: 79339265
Number of successful extensions: 7684041
Number of sequences better than 10.0: 1238
Length of query: 709
Length of database: 101,790,757,118
Length adjustment: 24
Effective length of query: 685
Effective length of database: 99,340,224,878
Effective search space: 68048054041430
Effective search space used: 68048054041430
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)

Query= Contig-U04426-1 (Contig-U04426-1Q) /CSM_Contig/Contig-U04426-1Q.Seq.d
         (709 letters)

Database: nrp_A
           3,268,448 sequences; 1,061,185,681 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U81000_1(U81000|pid:none) Dictyostelium discoideum unknown prote...   288   1e-76
(A7KAJ8) RecName: Full=Autophagy-related protein 13;  &EF107720_...    50   7e-05
(A3LQY1) RecName: Full=Autophagy-related protein 13;  &CP000497_...    46   0.001
(Q6C315) RecName: Full=Autophagy-related protein 13;  &CR382132_...    44   0.006
(Q5A1Z5) RecName: Full=Autophagy-related protein 13;                   43   0.011
AK227226_1(AK227226|pid:none) Arabidopsis thaliana mRNA for hypo...    40   0.093
AB026654_13(AB026654|pid:none) Arabidopsis thaliana genomic DNA,...    39   0.16
AK228910_1(AK228910|pid:none) Arabidopsis thaliana mRNA for hypo...    39   0.16
AK121283_1(AK121283|pid:none) Oryza sativa Japonica Group cDNA c...    39   0.21
(Q1E891) RecName: Full=Autophagy-related protein 13;                   37   0.46
BT083953_1(BT083953|pid:none) Zea mays full-length cDNA clone ZM...    37   0.60
EU956891_1(EU956891|pid:none) Zea mays clone 1576815 hypothetica...    37   0.60
EU972880_1(EU972880|pid:none) Zea mays clone 389563 hypothetical...    35   1.7
AB027916_1(AB027916|pid:none) Schizosaccharomyces pombe gene for...    35   3.0
(O36019) RecName: Full=Autophagy protein 13; AltName: Full=Meiot...    35   3.0
(Q492V0) RecName: Full=Phenylalanyl-tRNA synthetase beta chain; ...    33   6.6

>U81000_1(U81000|pid:none) Dictyostelium discoideum unknown protein
           mRNA, promotor region and complete cds.
          Length = 800

 Score =  288 bits (737), Expect = 1e-76
 Identities = 146/160 (91%), Positives = 146/160 (91%)
 Frame = +1

Query: 205 MDSRYSDLIRKTISKISQCILLXXXXXXXXXXXXNKTFHLETEESDIHRQEIDRIVLKND 384
           MDSRYSDLIRKTISKISQCILL            NKTFHLETEESDIHRQEIDRIVLKND
Sbjct: 1   MDSRYSDLIRKTISKISQCILLSRVETSSVSRRVNKTFHLETEESDIHRQEIDRIVLKND 60

Query: 385 MRILFVIEIHFDENVGLGLXXIVESWRIIFDPREIDNSVELPKFYKNVIILIRTIYAMLR 564
           MRILFVIEIHFDENVGLGL  IVESWRIIFDPREIDNSVELPKFYKNVIILIRTIYAMLR
Sbjct: 61  MRILFVIEIHFDENVGLGLNTIVESWRIIFDPREIDNSVELPKFYKNVIILIRTIYAMLR 120

Query: 565 NIPCYSLFKNFSKNRSATCSVNYQLRVCDSQSITTPSFPL 684
           NIPCYSLFKNFSKNRSATCSVNYQLRVCDSQSITTPSFPL
Sbjct: 121 NIPCYSLFKNFSKNRSATCSVNYQLRVCDSQSITTPSFPL 160

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3268448
Number of Hits to DB: 914,213,901
Number of extensions: 16596680
Number of successful extensions: 30370
Number of sequences better than 10.0: 16
Number of HSP's gapped: 30353
Number of HSP's successfully gapped: 16
Length of query: 236
Length of database: 1,061,185,681
Length adjustment: 125
Effective length of query: 111
Effective length of database: 652,629,681
Effective search space: 72441894591
Effective search space used: 72441894591
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 31 (16.5 bits)

 psg: 0.81  gvh: 0.47  alm: 0.38  top: 0.53  tms: 0.00  mit: 0.31  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: cytoplasmic
	 44.0 %: nuclear
	  4.0 %: mitochondrial
	  4.0 %: peroxisomal

>> prediction for Contig-U04426-1 is cyt