Contig-U04404-1
Contig ID Contig-U04404-1
Contig update 2001. 8.29
Contig sequence
>Contig-U04404-1 (Contig-U04404-1Q) /CSM_Contig/Contig-U04404-1Q.Seq.d
AAATTATATAATATACACTTAAAAAATGTCAGATCCATTTGGTGAAGAAA
ATGTTGAAATCACAGAAGAATTTGTTGAAGGAGATATCAATGAAAATGAT
TTAATCGATGGAAATGTAGAATATGTTGATGGTAATGGTATTTCATTTGA
AACCACAACATTTGACAACTCAAACAACAACAATAACAATAATAACCATA
ACAATAATAGCTATAATAGTGGATTCGATGGTGATTTATCCTCAGTTGAT
GGTGACATGAAACCAAAAGAAACTGCACCAGCAATGAGAGAATATTTGGA
AAAACATGAAAAAGAAATGCAAGAAAAGAAAAAGAAATCTGAAGAAAAAC
GTCAAAAAAAGATTGCAGAAGCTAAACAATCATTAGATAATTTTTATAGT
GAACGTGAAGCAAAGAAAAAGACAGCATTAAAAAACAATAGGGATCATAA
TAAATCATTAGAAACTGATTCAACCAGTGGTAACACTACTCACACTTGGG
AATCTGTTGTCTCAATGATCGATTTACAAGCAAAACCAAATCCAGCCAAT
AAAGATACTTCAAGAATGAGAGAAATTTTAATTCGTTTAAAAAATCAACC
AATTGTTTAAAATAAAAAAAAAAAAAAAAGAGATTAATTAATAAATAATA
ATAATAATAATATAATAATAAAAAAAAATTAAAAAATAAAAAATGATTAA
AAAAAAAAAAAAAAAAAAAAAA

Gap no gap
Contig length 722
Chromosome number (1..6, M) 2
Chromosome length 8467578
Start point 8103781
End point 8103059
Strand (PLUS/MINUS) MINUS
Number of clones 7
Number of EST 9
Link to clone list U04404
List of clone(s)

est1=VSF575F,1,528
est2=VSC596Z,20,613
est3=SSK264E,21,613
est4=VSH121F,29,537
est5=SSA487E,32,613
est6=VSE147Z,110,699
est7=VSA767Z,187,723
est8=VSH121Z,557,693
est9=VSF575Z,567,685
Translated Amino Acid sequence
nyiiyt*KMSDPFGEENVEITEEFVEGDINENDLIDGNVEYVDGNGISFETTTFDNSNNN
NNNNNHNNNSYNSGFDGDLSSVDGDMKPKETAPAMREYLEKHEKEMQEKKKKSEEKRQKK
IAEAKQSLDNFYSEREAKKKTALKNNRDHNKSLETDSTSGNTTHTWESVVSMIDLQAKPN
PANKDTSRMREILIRLKNQPIV*nkkkkkrd*linnnnnniiikkn*kiknd*kkkkkkk


Translated Amino Acid sequence (All Frames)
Frame A:
klynihlknvrsiw*rkc*nhrric*rryq*k*fnrwkcric*w*wyfi*nhni*qlkqq
q*q**p*q**l**wirw*fils*w*hetkrnctsnerifgkt*krnarkekei*rktskk
dcrs*tiir*fl**t*skekdsikkq*gs**iirn*fnqw*hyshlgicclndrftsktk
ssq*ryfknernfnsfkkstnclk*kkkkkrlink*****ynnkkklknkk*lkkkkkkk


Frame B:
nyiiyt*KMSDPFGEENVEITEEFVEGDINENDLIDGNVEYVDGNGISFETTTFDNSNNN
NNNNNHNNNSYNSGFDGDLSSVDGDMKPKETAPAMREYLEKHEKEMQEKKKKSEEKRQKK
IAEAKQSLDNFYSEREAKKKTALKNNRDHNKSLETDSTSGNTTHTWESVVSMIDLQAKPN
PANKDTSRMREILIRLKNQPIV*nkkkkkrd*linnnnnniiikkn*kiknd*kkkkkkk


Frame C:
ii*ytlkkcqihlvkkmlksqknllkeismkmi*smem*nmlmvmvfhlkpqhlttqttt
itiititiiaiivdsmviypqlmvt*nqkklhqq*eniwknmkkkckkrkrnlkknvkkr
lqklnnh*iifivnvkqrkrqh*ktigiiinh*kliqpvvtlltlgnllsq*siykqnqi
qpikilqe*ekf*fv*kinqlfkikkkkkein**iiiiii***kkikk*kmikkkkkkkk


own update 2004. 6.10
Homology vs CSM-cDNA
Query= Contig-U04404-1 (Contig-U04404-1Q)
/CSM_Contig/Contig-U04404-1Q.Seq.d
(722 letters)

Database: CSM
6905 sequences; 5,674,871 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U04404-1 (Contig-U04404-1Q) /CSM_Contig/Conti... 502 e-142
Contig-U12673-1 (Contig-U12673-1Q) /CSM_Contig/Conti... 40 0.003
Contig-U05696-1 (Contig-U05696-1Q) /CSM_Contig/Conti... 40 0.003
Contig-U13873-1 (Contig-U13873-1Q) /CSM_Contig/Conti... 36 0.051
Contig-U11850-1 (Contig-U11850-1Q) /CSM_Contig/Conti... 36 0.051
Contig-U09392-1 (Contig-U09392-1Q) /CSM_Contig/Conti... 36 0.051
Contig-U05471-1 (Contig-U05471-1Q) /CSM_Contig/Conti... 36 0.051
Contig-U11418-1 (Contig-U11418-1Q) /CSM_Contig/Conti... 34 0.20
Contig-U11385-1 (Contig-U11385-1Q) /CSM_Contig/Conti... 34 0.20
Contig-U11038-1 (Contig-U11038-1Q) /CSM_Contig/Conti... 34 0.20

>Contig-U04404-1 (Contig-U04404-1Q) /CSM_Contig/Contig-U04404-1Q.Seq.d
Length = 722

Score = 502 bits (253), Expect = e-142
Identities = 253/253 (100%)
Strand = Plus / Plus


Query: 361 gattgcagaagctaaacaatcattagataatttttatagtgaacgtgaagcaaagaaaaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 gattgcagaagctaaacaatcattagataatttttatagtgaacgtgaagcaaagaaaaa 420


Query: 421 gacagcattaaaaaacaatagggatcataataaatcattagaaactgattcaaccagtgg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 gacagcattaaaaaacaatagggatcataataaatcattagaaactgattcaaccagtgg 480


Query: 481 taacactactcacacttgggaatctgttgtctcaatgatcgatttacaagcaaaaccaaa 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 taacactactcacacttgggaatctgttgtctcaatgatcgatttacaagcaaaaccaaa 540


Query: 541 tccagccaataaagatacttcaagaatgagagaaattttaattcgtttaaaaaatcaacc 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 tccagccaataaagatacttcaagaatgagagaaattttaattcgtttaaaaaatcaacc 600


Query: 601 aattgtttaaaat 613
|||||||||||||
Sbjct: 601 aattgtttaaaat 613


Score = 323 bits (163), Expect = 1e-88
Identities = 163/163 (100%)
Strand = Plus / Plus


Query: 1 aaattatataatatacacttaaaaaatgtcagatccatttggtgaagaaaatgttgaaat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aaattatataatatacacttaaaaaatgtcagatccatttggtgaagaaaatgttgaaat 60


Query: 61 cacagaagaatttgttgaaggagatatcaatgaaaatgatttaatcgatggaaatgtaga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 cacagaagaatttgttgaaggagatatcaatgaaaatgatttaatcgatggaaatgtaga 120


Query: 121 atatgttgatggtaatggtatttcatttgaaaccacaacattt 163
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 atatgttgatggtaatggtatttcatttgaaaccacaacattt 163


Score = 159 bits (80), Expect = 5e-39
Identities = 80/80 (100%)
Strand = Plus / Plus


Query: 219 gtggattcgatggtgatttatcctcagttgatggtgacatgaaaccaaaagaaactgcac 278
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 219 gtggattcgatggtgatttatcctcagttgatggtgacatgaaaccaaaagaaactgcac 278


Query: 279 cagcaatgagagaatatttg 298
||||||||||||||||||||
Sbjct: 279 cagcaatgagagaatatttg 298


>Contig-U12673-1 (Contig-U12673-1Q) /CSM_Contig/Contig-U12673-1Q.Seq.d
Length = 2561

Score = 40.1 bits (20), Expect = 0.003
Identities = 20/20 (100%)
Strand = Plus / Plus


Query: 126 ttgatggtaatggtatttca 145
||||||||||||||||||||
Sbjct: 741 ttgatggtaatggtatttca 760


>Contig-U05696-1 (Contig-U05696-1Q) /CSM_Contig/Contig-U05696-1Q.Seq.d
Length = 436

Score = 40.1 bits (20), Expect = 0.003
Identities = 20/20 (100%)
Strand = Plus / Plus


Query: 450 ataaatcattagaaactgat 469
||||||||||||||||||||
Sbjct: 31 ataaatcattagaaactgat 50


Database: CSM
Posted date: Jun 9, 2004 7:35 PM
Number of letters in database: 5,674,871
Number of sequences in database: 6905

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8701
Number of Sequences: 6905
Number of extensions: 8701
Number of successful extensions: 867
Number of sequences better than 10.0: 78
length of query: 722
length of database: 5,674,871
effective HSP length: 16
effective length of query: 706
effective length of database: 5,564,391
effective search space: 3928460046
effective search space used: 3928460046
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2009. 6.19
Homology vs DNA
Query= Contig-U04404-1 (Contig-U04404-1Q) /CSM_Contig/Contig-U04404-1Q.Seq.d
(722 letters)

Database: ddbj_A
102,105,510 sequences; 101,790,757,118 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(AC117081) Dictyostelium discoideum chromosome 2 map 5862124... 498 0.0 3
(AU262660) Dictyostelium discoideum vegetative cDNA clone:VS... 498 0.0 3
(C91447) Dictyostelium discoideum slug cDNA, clone SSK264. 498 0.0 3
(AY394008) Dictyostelium discoideum clathrin light chain (cl... 492 0.0 3
(C83881) Dictyostelium discoideum slug cDNA, clone SSA487. 498 0.0 3
(AU265446) Dictyostelium discoideum vegetative cDNA clone:VS... 329 0.0 3
(AU262905) Dictyostelium discoideum vegetative cDNA clone:VS... 498 0.0 3
(AU266938) Dictyostelium discoideum vegetative cDNA clone:VS... 347 0.0 3
(AU261723) Dictyostelium discoideum vegetative cDNA clone:VS... 498 e-176 2
(AU266939) Dictyostelium discoideum vegetative cDNA clone:VS... 68 5e-07 1
(FG294624) 1108770716152 New World Screwworm Larvae 9387 EST... 42 0.027 2
(CU469174) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 38 0.27 2
(CT955971) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 38 0.27 2
(AC104035) Homo sapiens chromosome 15, clone RP11-661P17, co... 48 0.47 1
(AL354706) Human DNA sequence from clone RP11-229I7 on chrom... 38 0.94 3
(DU398945) 1098448092477 CHORI-243 Ovis aries genomic clone ... 46 1.9 1
(CE107199) tigr-gss-dog-17000371172230 Dog Library Canis lup... 46 1.9 1
(DQ223262) Mycoplasma primatum strain HRC292 RNA polymerase ... 46 1.9 1
(CC289836) CH261-171O7_RM1.1 CH261 Gallus gallus genomic clo... 44 2.1 2
(AC109395) Rattus norvegicus clone CH230-133F9, *** SEQUENCI... 34 3.5 2
(AC127874) Rattus norvegicus clone CH230-221N9, *** SEQUENCI... 34 3.5 2
(CU432410) Clytia hemisphaerica 5-PRIME EST from clone SA0AA... 34 4.5 2
(EJ671826) 1092955062129 Global-Ocean-Sampling_GS-30-02-01-1... 32 6.0 3
(BM163234) EST565757 PyBS Plasmodium yoelii yoelii cDNA clon... 34 7.3 2
(CU855697) Zebrafish DNA sequence from clone DKEY-106A20 in ... 44 7.3 1
(BV477584) G591P642360RG11.T0 Clint Pan troglodytes verus ST... 44 7.3 1
(AC199838) Pan troglodytes BAC clone CH251-307B6 from chromo... 44 7.3 1
(AL008629) Human DNA sequence from clone RP1-197O17 on chrom... 44 7.3 1
(AC093884) Homo sapiens BAC clone RP11-660K21 from 2, comple... 44 7.3 1
(AC148651) Medicago truncatula chromosome unknown clone mte1... 44 7.3 1
(AC121636) Rattus norvegicus clone CH230-77A19, WORKING DRAF... 44 7.3 1
(AC120524) Felis catus clone RP86-384K5, WORKING DRAFT SEQUE... 44 7.3 1
(AC094178) Rattus norvegicus clone CH230-2P20, WORKING DRAFT... 44 7.3 1
(AC092412) Felis catus clone RP86-565I16, WORKING DRAFT SEQU... 44 7.3 1
(CU467680) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 7.3 1
(CU062585) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 7.3 1
(AC171341) Macaca mulatta clone CH250-498B22, WORKING DRAFT ... 44 7.3 1
(AC170191) Macaca mulatta clone CH250-431C15, WORKING DRAFT ... 44 7.3 1
(AC166038) Medicago truncatula clone mth2-107h21, WORKING DR... 44 7.3 1
(AC016701) Homo sapiens chromosome 2 clone RP11-183N7, WORKI... 44 7.3 1
(AZ678986) ENTKA25TR Entamoeba histolytica Sheared DNA Entam... 44 7.3 1
(AM659861) Entamoeba moshkovskii FIC GSS, clone mosh092e11.p1k. 44 7.3 1
(AM658081) Entamoeba moshkovskii FIC GSS, clone mosh078c04.p1k. 44 7.3 1
(AM649318) Entamoeba moshkovskii FIC GSS, clone mosh066g03.p1k. 44 7.3 1
(AM649028) Entamoeba moshkovskii FIC GSS, clone mosh064a03.q1k. 44 7.3 1
(EJ440132) 1093015300501 Global-Ocean-Sampling_GS-28-01-01-1... 44 7.3 1
(DU948095) 409362 Tomato EcoRI BAC Library Solanum lycopersi... 44 7.3 1
(DU933793) 360353 Tomato EcoRI BAC Library Solanum lycopersi... 44 7.3 1
(CE287540) tigr-gss-dog-17000333818100 Dog Library Canis lup... 44 7.3 1
(CO123794) GR__Eb06D15.f GR__Eb Gossypium raimondii cDNA clo... 44 7.3 1
(CO093753) GR__Ea15I03.r GR__Ea Gossypium raimondii cDNA clo... 44 7.3 1
(EV819969) BGBV-aae81f09.b1 Snail_EST_pSMART Biomphalaria gl... 44 7.3 1
(CP001078) Clostridium botulinum E3 str. Alaska E43, complet... 44 7.3 1
(AC178043) Strongylocentrotus purpuratus clone R3-3056B01, W... 38 8.6 5

>(AC117081) Dictyostelium discoideum chromosome 2 map 5862124-6045772
strain AX4, complete sequence.
Length = 183648

Score = 498 bits (251), Expect(3) = 0.0
Identities = 251/251 (100%)
Strand = Plus / Minus


Query: 363 ttgcagaagctaaacaatcattagataatttttatagtgaacgtgaagcaaagaaaaaga 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 150709 ttgcagaagctaaacaatcattagataatttttatagtgaacgtgaagcaaagaaaaaga 150650


Query: 423 cagcattaaaaaacaatagggatcataataaatcattagaaactgattcaaccagtggta 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 150649 cagcattaaaaaacaatagggatcataataaatcattagaaactgattcaaccagtggta 150590


Query: 483 acactactcacacttgggaatctgttgtctcaatgatcgatttacaagcaaaaccaaatc 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 150589 acactactcacacttgggaatctgttgtctcaatgatcgatttacaagcaaaaccaaatc 150530


Query: 543 cagccaataaagatacttcaagaatgagagaaattttaattcgtttaaaaaatcaaccaa 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 150529 cagccaataaagatacttcaagaatgagagaaattttaattcgtttaaaaaatcaaccaa 150470


Query: 603 ttgtttaaaat 613
|||||||||||
Sbjct: 150469 ttgtttaaaat 150459

Score = 297 bits (150), Expect(3) = 0.0
Identities = 150/150 (100%)
Strand = Plus / Minus


Query: 1 aaattatataatatacacttaaaaaatgtcagatccatttggtgaagaaaatgttgaaat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 151177 aaattatataatatacacttaaaaaatgtcagatccatttggtgaagaaaatgttgaaat 151118


Query: 61 cacagaagaatttgttgaaggagatatcaatgaaaatgatttaatcgatggaaatgtaga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 151117 cacagaagaatttgttgaaggagatatcaatgaaaatgatttaatcgatggaaatgtaga 151058


Query: 121 atatgttgatggtaatggtatttcatttga 150
||||||||||||||||||||||||||||||
Sbjct: 151057 atatgttgatggtaatggtatttcatttga 151028

Score = 139 bits (70), Expect(3) = 0.0
Identities = 70/70 (100%)
Strand = Plus / Minus


Query: 219 gtggattcgatggtgatttatcctcagttgatggtgacatgaaaccaaaagaaactgcac 278
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 150959 gtggattcgatggtgatttatcctcagttgatggtgacatgaaaccaaaagaaactgcac 150900


Query: 279 cagcaatgag 288
||||||||||
Sbjct: 150899 cagcaatgag 150890

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 102105510
Number of Hits to DB: 732,919,903
Number of extensions: 45566793
Number of successful extensions: 3790359
Number of sequences better than 10.0: 55
Length of query: 722
Length of database: 101,790,757,118
Length adjustment: 24
Effective length of query: 698
Effective length of database: 99,340,224,878
Effective search space: 69339476964844
Effective search space used: 69339476964844
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)

protein update 2009. 7.30
Homology vs Protein
Query= Contig-U04404-1 (Contig-U04404-1Q) /CSM_Contig/Contig-U04404-1Q.Seq.d
(722 letters)

Database: nrp_A
3,268,448 sequences; 1,061,185,681 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

(Q8MN58) RecName: Full=Clathrin light chain; &AC117081_53(AC117... 263 5e-69
DQ012128_1(DQ012128|pid:none) Trichoplax sp. BZ10101 clathrin li... 57 4e-07
(Q9USP6) RecName: Full=Clathrin light chain; Short=CLC;... 54 4e-06
BC060412_1(BC060412|pid:none) Xenopus laevis hypothetical protei... 52 1e-05
BT045496_1(BT045496|pid:none) Salmo salar clone ssal-rgf-523-074... 51 4e-05
BT046798_1(BT046798|pid:none) Salmo salar clone ssal-rgb2-517-02... 51 4e-05
BT080744_1(BT080744|pid:none) Caligus clemensi clone ccle-evs-50... 50 5e-05
BT057753_1(BT057753|pid:none) Salmo salar clone ssal-rgb2-603-38... 50 5e-05
EZ000474_1(EZ000474|pid:none) TSA: Culex tarsalis Ctar-329 clath... 50 7e-05
X04851_1(X04851|pid:none) Bos taurus mRNA for clathrin light cha... 50 9e-05
BC123251_1(BC123251|pid:none) Xenopus laevis clathrin, light pol... 49 2e-04
AK291078_1(AK291078|pid:none) Homo sapiens cDNA FLJ77116 complet... 48 3e-04
AK146965_1(AK146965|pid:none) Mus musculus 13 days embryo liver ... 48 3e-04
AL732563_8(AL732563|pid:none) Mouse DNA sequence from clone RP23... 48 3e-04
AK168130_1(AK168130|pid:none) Mus musculus CRL-1722 L5178Y-R cDN... 48 3e-04
BT077836_1(BT077836|pid:none) Lepeophtheirus salmonis Pacific fo... 47 5e-04
BC061272_1(BC061272|pid:none) Xenopus tropicalis clathrin, light... 47 6e-04
AJ721067_1(AJ721067|pid:none) Gallus gallus mRNA for hypothetica... 47 6e-04
AJ720113_1(AJ720113|pid:none) Gallus gallus mRNA for hypothetica... 45 0.002
CR382131_1379(CR382131|pid:none) Yarrowia lipolytica strain CLIB... 44 0.007
AY813099_1(AY813099|pid:none) Schistosoma japonicum SJCHGC00953 ... 41 0.033
AK029382_1(AK029382|pid:none) Mus musculus 0 day neonate head cD... 41 0.033
FN314329_1(FN314329|pid:none) Schistosoma japonicum isolate Anhu... 41 0.033
AK009844_1(AK009844|pid:none) Mus musculus adult male tongue cDN... 41 0.033
CR536577_1(CR536577|pid:none) Homo sapiens full open reading fra... 41 0.033
X04853_1(X04853|pid:none) Bos taurus mRNA for clathrin light cha... 41 0.033
BC128349_1(BC128349|pid:none) Mus musculus clathrin, light polyp... 41 0.033
AY892384_1(AY892384|pid:none) Synthetic construct Homo sapiens c... 41 0.033
CP001328_671(CP001328|pid:none) Micromonas sp. RCC299 chromosome... 40 0.073
CU928166_87(CU928166|pid:none) Kluyveromyces thermotolerans stra... 40 0.073
AL732563_6(AL732563|pid:none) Mouse DNA sequence from clone RP23... 40 0.096
AK295692_1(AK295692|pid:none) Homo sapiens cDNA FLJ60566 complet... 40 0.096
CU928175_563(CU928175|pid:none) Zygosaccharomyces rouxii strain ... 39 0.16
BC060939_1(BC060939|pid:none) Danio rerio clathrin, light chain ... 39 0.16
BC118427_1(BC118427|pid:none) Bos taurus clathrin, light polypep... 39 0.21
(O08585) RecName: Full=Clathrin light chain A; Short=Lc... 38 0.28
(P08081) RecName: Full=Clathrin light chain A; Short=Lc... 38 0.28
M19260_1(M19260|pid:none) Rat clathrin light chain (LCA2) mRNA, ... 38 0.28
DQ214001_1(DQ214001|pid:none) Taeniopygia guttata clone 0058P005... 38 0.28
LRRTA1(A25994)clathrin light chain A1 - rat (fragment) 38 0.28
DQ270158_1(DQ270158|pid:none) Homo sapiens brain-specific clathr... 38 0.28
Z72953_1(Z72953|pid:none) S.cerevisiae chromosome VII reading fr... 38 0.28
AL732563_4(AL732563|pid:none) Mouse DNA sequence from clone RP23... 38 0.28
CR380955_376(CR380955|pid:none) Candida glabrata strain CBS138 c... 38 0.36
AE017349_53(AE017349|pid:none) Cryptococcus neoformans var. neof... 37 0.62
FN357420_36(FN357420|pid:none) Schistosoma mansoni genome sequen... 37 0.81
EU835513_7(EU835513|pid:none) Murine adenovirus 3, complete geno... 36 1.4
FJ478177_10(FJ478177|pid:none) Enicospilus sp. MD-2008 mitochond... 35 1.8
CR382126_632(CR382126|pid:none) Kluyveromyces lactis strain NRRL... 35 1.8
(P09497) RecName: Full=Clathrin light chain B; Short=Lc... 34 4.0
(Q6IRU5) RecName: Full=Clathrin light chain B; Short=Lc... 34 4.0
LRRTB2(B25994)clathrin light chain B2 - rat (fragment) 34 4.0
BC148120_1(BC148120|pid:none) Bos taurus clathrin, light polypep... 34 4.0
AE016877_1909(AE016877|pid:none) Bacillus cereus ATCC 14579, com... 33 6.9
CP001186_1918(CP001186|pid:none) Bacillus cereus G9842, complete... 33 9.0

>(Q8MN58) RecName: Full=Clathrin light chain;
&AC117081_53(AC117081|pid:none)
&AY394008_1(AY394008|pid:none)
Length = 194

Score = 263 bits (671), Expect = 5e-69
Identities = 140/194 (72%), Positives = 140/194 (72%)
Frame = +2

Query: 26 MSDPXXXXXXXXXXXXXXXDINENDLIDGNVEYVDGNGISFETTTFDXXXXXXXXXXXXX 205
MSDP DINENDLIDGNVEYVDGNGISFETTTFD
Sbjct: 1 MSDPFGEENVEITEEFVEGDINENDLIDGNVEYVDGNGISFETTTFDNSNNNNNNNNHNN 60

Query: 206 XXXXXGFDGDLSSVDGDMKPKETAPAMREYLXXXXXXXXXXXXXXXXXXXXXIAEAKQSL 385
GFDGDLSSVDGDMKPKETAPAMREYL IAEAKQSL
Sbjct: 61 NSYNSGFDGDLSSVDGDMKPKETAPAMREYLEKHEKEMQEKKKKSEEKRQKKIAEAKQSL 120

Query: 386 DNFYSEREAKKKTALKNNRDHNKSLETDSTSGNTTHTWESVVSMIDLQAKPNPANKDTSR 565
DNFYSEREAKKKTALKNNRDHNKSLETDSTSGNTTHTWESVVSMIDLQAKPNPANKDTSR
Sbjct: 121 DNFYSEREAKKKTALKNNRDHNKSLETDSTSGNTTHTWESVVSMIDLQAKPNPANKDTSR 180

Query: 566 MREILIRLKNQPIV 607
MREILIRLKNQPIV
Sbjct: 181 MREILIRLKNQPIV 194

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3268448
Number of Hits to DB: 729,426,276
Number of extensions: 10112122
Number of successful extensions: 28390
Number of sequences better than 10.0: 55
Number of HSP's gapped: 28344
Number of HSP's successfully gapped: 55
Length of query: 240
Length of database: 1,061,185,681
Length adjustment: 125
Effective length of query: 115
Effective length of database: 652,629,681
Effective search space: 75052413315
Effective search space used: 75052413315
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 31 (16.5 bits)

PSORT

psg: 0.75 gvh: 0.21 alm: 0.61 top: 0.53 tms: 0.00 mit: 0.24 mip: 0.00
nuc: 0.04 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

52.0 %: nuclear
28.0 %: cytoplasmic
12.0 %: mitochondrial
8.0 %: cytoskeletal

>> prediction for Contig-U04404-1 is nuc

VS (DIR, S) 5
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 2
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0