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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U04403-1
Contig ID Contig-U04403-1
Contig update 2002. 9.13
Contig sequence 
>Contig-U04403-1 (Contig-U04403-1Q) /CSM_Contig/Contig-U04403-1Q.Seq.d
GAATTTATAATGAAACCATTATTAAAGATTATGTTATATCTTGGTAAAAT
TGAAGAATCTTATATATTATTATTATCATTTGTTAATCAATACCCTTTGA
ATCCTATTGGTTATATTTTATTAGGATCATATTTAATTGAACATAAATCA
AATGATACAGATAAAATTATACATTGTTATAGAACTTTAATAAATTTAGA
TCCAATTTCAAATAATGCATTTAGTGTTTTACTTCAATTATATTATAGTA
CTCAAATAGGTAATGATGACAATGATGAAGATTGCGATGAAGAGGAATTA
ATATCAGAGAATATGATTTCATTTGAAGAGATATTTAAATTATATACCAA
TAGATTATCGATAACTCCTGATGATTTAGAGATTTGGAAATTATTTTATT
ACTTTTTAAAGGATAATATAGCAAATAGAAATAAATTAGTGAAAAGAGTT
ACATCAAGTTTTCAATGTCAATCATTTTTAGCCACTTGTTTTAATGACT
Gap no gap
Contig length 499
Chromosome number (1..6, M) 1
Chromosome length 4919822
Start point 4899286
End point 4899788
Strand (PLUS/MINUS) PLUS
Number of clones 1
Number of EST 1
Link to clone list U04403
List of clone(s) 

est1=SSA483F,1,500
Translated Amino Acid sequence 
EFIMKPLLKIMLYLGKIEESYILLLSFVNQYPLNPIGYILLGSYLIEHKSNDTDKIIHCY
RTLINLDPISNNAFSVLLQLYYSTQIGNDDNDEDCDEEELISENMISFEEIFKLYTNRLS
ITPDDLEIWKLFYYFLKDNIANRNKLVKRVTSSFQCQSFLATCFND
Translated Amino Acid sequence (All Frames) 
Frame A:
EFIMKPLLKIMLYLGKIEESYILLLSFVNQYPLNPIGYILLGSYLIEHKSNDTDKIIHCY
RTLINLDPISNNAFSVLLQLYYSTQIGNDDNDEDCDEEELISENMISFEEIFKLYTNRLS
ITPDDLEIWKLFYYFLKDNIANRNKLVKRVTSSFQCQSFLATCFND


Frame B:
nl**nhy*rlcyilvklknliyyyyhllintl*illvify*dhi*lninqmiqiklyivi
el**i*iqfqimhlvfyfnyiivlk*vmmtmmkiamkrn*yqri*fhlkrylnyipidyr
*llmi*rfgnyfitf*rii*qiein**kelhqvfnvnhf*plvlmt


Frame C:
iynetiikdyvisw*n*rilyiiiiic*sipfesywlyfiriifn*t*ik*yr*nytll*
nfnkfrsnfk*ci*cftsiil*ysnr***q**rlr*rginireydfi*rdi*iiyq*iid
ns**frdleiilllfkg*ysk*k*iseksyikfsmsiifshlf**
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U04403-1 (Contig-U04403-1Q)
/CSM_Contig/Contig-U04403-1Q.Seq.d
         (499 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U04403-1 (Contig-U04403-1Q) /CSM_Contig/Conti...   989  0.0
Contig-U09751-1 (Contig-U09751-1Q) /CSM_Contig/Conti...    40  0.002
Contig-U13937-1 (Contig-U13937-1Q) /CSM_Contig/Conti...    38  0.009
Contig-U12139-1 (Contig-U12139-1Q) /CSM_Contig/Conti...    38  0.009
Contig-U11890-1 (Contig-U11890-1Q) /CSM_Contig/Conti...    38  0.009
Contig-U10384-1 (Contig-U10384-1Q) /CSM_Contig/Conti...    38  0.009
Contig-U03215-1 (Contig-U03215-1Q) /CSM_Contig/Conti...    38  0.009
Contig-U14316-1 (Contig-U14316-1Q) /CSM_Contig/Conti...    36  0.035
Contig-U13805-1 (Contig-U13805-1Q) /CSM_Contig/Conti...    36  0.035
Contig-U13204-1 (Contig-U13204-1Q) /CSM_Contig/Conti...    32  0.54

>Contig-U04403-1 (Contig-U04403-1Q) /CSM_Contig/Contig-U04403-1Q.Seq.d
          Length = 499

 Score =  989 bits (499), Expect = 0.0
 Identities = 499/499 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   gaatttataatgaaaccattattaaagattatgttatatcttggtaaaattgaagaatct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   gaatttataatgaaaccattattaaagattatgttatatcttggtaaaattgaagaatct 60

                                                                       
Query: 61  tatatattattattatcatttgttaatcaataccctttgaatcctattggttatatttta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  tatatattattattatcatttgttaatcaataccctttgaatcctattggttatatttta 120

                                                                       
Query: 121 ttaggatcatatttaattgaacataaatcaaatgatacagataaaattatacattgttat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ttaggatcatatttaattgaacataaatcaaatgatacagataaaattatacattgttat 180

                                                                       
Query: 181 agaactttaataaatttagatccaatttcaaataatgcatttagtgttttacttcaatta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 agaactttaataaatttagatccaatttcaaataatgcatttagtgttttacttcaatta 240

                                                                       
Query: 241 tattatagtactcaaataggtaatgatgacaatgatgaagattgcgatgaagaggaatta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tattatagtactcaaataggtaatgatgacaatgatgaagattgcgatgaagaggaatta 300

                                                                       
Query: 301 atatcagagaatatgatttcatttgaagagatatttaaattatataccaatagattatcg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 atatcagagaatatgatttcatttgaagagatatttaaattatataccaatagattatcg 360

                                                                       
Query: 361 ataactcctgatgatttagagatttggaaattattttattactttttaaaggataatata 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ataactcctgatgatttagagatttggaaattattttattactttttaaaggataatata 420

                                                                       
Query: 421 gcaaatagaaataaattagtgaaaagagttacatcaagttttcaatgtcaatcattttta 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 gcaaatagaaataaattagtgaaaagagttacatcaagttttcaatgtcaatcattttta 480

                              
Query: 481 gccacttgttttaatgact 499
           |||||||||||||||||||
Sbjct: 481 gccacttgttttaatgact 499


>Contig-U09751-1 (Contig-U09751-1Q) /CSM_Contig/Contig-U09751-1Q.Seq.d
          Length = 1105

 Score = 40.1 bits (20), Expect = 0.002
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 391  ttattttattactttttaaa 410
            ||||||||||||||||||||
Sbjct: 1090 ttattttattactttttaaa 1071


 Score = 32.2 bits (16), Expect = 0.54
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                           
Query: 378 agagatttggaaatta 393
           ||||||||||||||||
Sbjct: 279 agagatttggaaatta 294


>Contig-U13937-1 (Contig-U13937-1Q) /CSM_Contig/Contig-U13937-1Q.Seq.d
          Length = 1866

 Score = 38.2 bits (19), Expect = 0.009
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                  
Query: 65  tattattattatcatttgttaat 87
           |||||||||||| ||||||||||
Sbjct: 568 tattattattattatttgttaat 546


 Score = 32.2 bits (16), Expect = 0.54
 Identities = 19/20 (95%)
 Strand = Plus / Minus

                                
Query: 65   tattattattatcatttgtt 84
            |||||||||||| |||||||
Sbjct: 1733 tattattattataatttgtt 1714


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 22,900
Number of Sequences: 6905
Number of extensions: 22900
Number of successful extensions: 2879
Number of sequences better than 10.0: 890
length of query: 499
length of database: 5,674,871
effective HSP length: 16
effective length of query: 483
effective length of database: 5,564,391
effective search space: 2687600853
effective search space used: 2687600853
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)
dna update 2009. 6.19
Homology vs DNA 
Query= Contig-U04403-1 (Contig-U04403-1Q) /CSM_Contig/Contig-U04403-1Q.Seq.d
         (499 letters)

Database: ddbj_A
           102,105,510 sequences; 101,790,757,118 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU072662) Dictyostelium discoideum slug cDNA, clone SSA483.      476   e-130  1
(AE014824) Plasmodium falciparum 3D7 chromosome 14 section 9...    36   0.002  9
(AP008981) Orientia tsutsugamushi str. Ikeda DNA, complete g...    34   0.004  16
(AF250284) Amsacta moorei entomopoxvirus, complete genome.         32   0.006  10
(BA000026) Mycoplasma penetrans HF-2 DNA, complete genome.         36   0.010  16
(AC104071) Homo sapiens BAC clone RP11-315A17 from 4, comple...    44   0.010  6
(AC115599) Dictyostelium discoideum chromosome 2 map 4229098...    36   0.018  7
(AF409138) Lumpy skin disease virus isolate Neethling vaccin...    42   0.029  8
(CT963094) M.truncatula DNA sequence from clone MTH2-82K24 o...    36   0.037  6
(AP009180) Candidatus Carsonella ruddii PV DNA, complete gen...    38   0.040  8
(CS730392) Sequence 322 from Patent WO2007095469.                  40   0.040  2
(CP000263) Buchnera aphidicola str. Cc (Cinara cedri), compl...    36   0.040  13
(AL731548) Mouse DNA sequence from clone RP23-71M18 on chrom...    36   0.050  2
(CR548612) Paramecium tetraurelia macronuclear largest chrom...    34   0.058  14
(AM454563) Vitis vinifera contig VV78X024118.5, whole genome...    34   0.066  3
(AC116986) Dictyostelium discoideum chromosome 2 map 2234041...    36   0.067  10
(EF583051) Human rotavirus A genotype G9P[8] capping protein...    38   0.086  3
(AY277920) Human rotavirus A strain A64 VP3 gene, complete cds.    38   0.091  3
(AY277918) Human rotavirus A strain L26 VP3 gene, complete cds.    38   0.091  3
(AY277917) Human rotavirus A strain WI-61 VP3 gene, complete...    38   0.091  3
(AJ011856) Saccharomyces cerevisiae complete mitochondrial g...    32   0.11   8
(AF409137) Lumpy skin disease virus NW-LW isolate Neethling ...    42   0.13   7
(AL354995) Human DNA sequence from clone RP11-512J14 on chro...    38   0.14   6
(CR936497) Zebrafish DNA sequence from clone DKEYP-30D5 in l...    40   0.15   5
(AC176607) Strongylocentrotus purpuratus clone R3-3079G14, W...    44   0.16   3
(AC177706) Strongylocentrotus purpuratus clone R3-1011I23, W...    38   0.19   3
(AF069291) Homo sapiens BAC clone 255A7 from 8q21 containing...    40   0.22   5
(DX522901) GH_MBb0028B24f GH_MBb Gossypium hirsutum genomic ...    36   0.23   3
(BX323866) Zebrafish DNA sequence from clone CH211-278M12 in...    36   0.24   4
(AY047363) Dictyostelium discoideum cGMP-stimulated cGMP pho...    34   0.25   4
(AC145767) Medicago truncatula clone mth2-11f1, complete seq...    34   0.25   5
(CR940353) Theileria annulata genomic DNA chromosome 4.            38   0.26   17
(AL844507) Plasmodium falciparum chromosome 8.                     34   0.27   11
(AE015929) Staphylococcus epidermidis ATCC 12228, complete g...    34   0.27   16
(DQ927305) Tetrahymena pigmentosa strain UM1060 mitochondrio...    34   0.28   5
(CU930050) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    42   0.28   3
(CR382399) Plasmodium falciparum chromosome 6, complete sequ...    32   0.30   9
(AL844509) Plasmodium falciparum chromosome 13.                    36   0.30   8
(CU929996) Brassica rapa subsp. pekinensis clone KBrB120P19,...    32   0.31   7
(AP008049) Lotus japonicus genomic DNA, chromosome 4, clone:...    36   0.32   3
(CP000721) Clostridium beijerinckii NCIMB 8052, complete gen...    38   0.32   15
(AC202727) Rhesus Macaque  BAC CH250-342I1 () complete seque...    48   0.32   1
(AL139192) Human DNA sequence from clone RP11-515I23 on chro...    48   0.32   1
(BX276116) Human DNA sequence *** SEQUENCING IN PROGRESS ***...    48   0.32   1
(FG942311) UCRVU09_CCNT9619_g1 Cowpea UCR 707 Mixed Tissue a...    48   0.32   1
(FG939982) UCRVU09_CCNT16631_b1 Cowpea UCR 707 Mixed Tissue ...    48   0.32   1
(FG938773) UCRVU09_CCNT15967_g1 Cowpea UCR 707 Mixed Tissue ...    48   0.32   1
(FG938772) UCRVU09_CCNT15967_b1 Cowpea UCR 707 Mixed Tissue ...    48   0.32   1
(FG901071) UCRVU08_CCNS16746_g1 Cowpea IT97K-461-4 Mixed Tis...    48   0.32   1
(FG901070) UCRVU08_CCNS16746_b1 Cowpea IT97K-461-4 Mixed Tis...    48   0.32   1
(FG894465) UCRVU08_CCNS13334_b1 Cowpea IT97K-461-4 Mixed Tis...    48   0.32   1
(FG886724) UCRVU07_CCNP9230_g1 Cowpea UCR 779 Mixed Tissue a...    48   0.32   1
(FG886723) UCRVU07_CCNP9230_b1 Cowpea UCR 779 Mixed Tissue a...    48   0.32   1
(FG861813) UCRVU05_CCNN7617_g6 Cowpea IT84S-2049 Mixed Tissu...    48   0.32   1
(FG861812) UCRVU05_CCNN7617_b6 Cowpea IT84S-2049 Mixed Tissu...    48   0.32   1
(FG852541) UCRVU05_CCNN18071_b1 Cowpea IT84S-2049 Mixed Tiss...    48   0.32   1
(FG826068) UCRVU04_CCNI9103_g1 Cowpea 524B Mixed Tissue and ...    48   0.32   1
(FG826067) UCRVU04_CCNI9103_b1 Cowpea 524B Mixed Tissue and ...    48   0.32   1
(FF537025) MOPA031TF MOP Vigna unguiculata cDNA 5', mRNA seq...    48   0.32   1
(FF401618) MOOE105TF MOO Vigna unguiculata cDNA 5', mRNA seq...    48   0.32   1
(FF401181) MOOEG15TF MOO Vigna unguiculata cDNA 5', mRNA seq...    48   0.32   1
(FF389160) MOOCG69TF MOO Vigna unguiculata cDNA 5', mRNA seq...    48   0.32   1
(CP000962) Clostridium botulinum A3 str. Loch Maree, complet...    48   0.32   1
(AE014831) Plasmodium falciparum 3D7 chromosome 10 section 3...    34   0.35   9
(AE014826) Plasmodium falciparum 3D7 chromosome 14 section 1...    38   0.35   9
(AL929352) Plasmodium falciparum strain 3D7, chromosome 5, s...    32   0.35   10
(AC005507) Plasmodium falciparum chromosome 12 clone PFYACB8...    36   0.36   8
(AC175475) Bos taurus clone CH240-408J7, WORKING DRAFT SEQUE...    36   0.37   4
(AF325528) Lumpy skin disease virus NI-2490 isolate Neethlin...    42   0.38   7
(AC135313) Medicago truncatula chromosome 8 clone mth2-7n18,...    34   0.41   6
(AC074178) Homo sapiens PAC clone RP5-1098O20 from 8, comple...    40   0.41   3
(EJ335622) 1092963475059 Global-Ocean-Sampling_GS-28-01-01-1...    36   0.49   2
(AM445199) Vitis vinifera contig VV78X015719.5, whole genome...    34   0.50   3
(CR382400) Plasmodium falciparum chromosome 6, complete sequ...    34   0.51   11
(EJ045097) 1095454114823 Global-Ocean-Sampling_GS-26-01-01-1...    38   0.56   3
(EF067921) Thalassiosira pseudonana chloroplast, complete ge...    32   0.56   7
(AJ277590) Dictyostelium discoideum iplA gene for inositol 1...    34   0.58   3
(AC181523) Strongylocentrotus purpuratus clone R3-64O23, WOR...    40   0.61   5
(AF049895) Homo sapiens chromosome 8 multiple clones map q21...    34   0.65   8
(AE014819) Plasmodium falciparum 3D7 chromosome 14 section 4...    34   0.67   10
(AL359694) Human DNA sequence from clone RP11-524C21 on chro...    40   0.71   4
(CR556696) Zebrafish DNA sequence from clone CH211-80J13 in ...    40   0.74   5
(AC006281) Plasmodium falciparum chromosome 12 clone PFYACB8...    42   0.75   9
(FP103062) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    42   0.79   5
(AE014816) Plasmodium falciparum 3D7 chromosome 14 section 1...    32   0.98   9
(AC180014) Strongylocentrotus purpuratus clone R3-16K21, WOR...    34   1.0    6
(AE014851) Plasmodium falciparum 3D7 chromosome 12, section ...    32   1.0    9
(AE014847) Plasmodium falciparum 3D7 chromosome 12, section ...    32   1.0    9
(AL844506) Plasmodium falciparum chromosome  7.                    36   1.2    10
(BX927395) Zebrafish DNA sequence from clone CH211-72A16 in ...    36   1.2    7
(AC188114) Pongo abelii chromosome UNK clone CH276-85H12, co...    38   1.2    5
(CR933520) Zebrafish DNA sequence from clone CH211-28A20 in ...    46   1.3    1
(CR387936) Zebrafish DNA sequence from clone CH211-85P6 in l...    46   1.3    1
(AC007020) Arabidopsis thaliana chromosome 2 clone T3G21 map...    46   1.3    1
(DD061483) Methods and nucleic acids for the analysis of  he...    46   1.3    1
(DD061337) Methods and nucleic acids for the analysis of  he...    46   1.3    1
(DD061171) Methods and nucleic acids for the analysis of  he...    46   1.3    1
(AX599045) Sequence 385 from Patent WO02077272.                    46   1.3    1
(AX598899) Sequence 239 from Patent WO02077272.                    46   1.3    1
(AX598733) Sequence 73 from Patent WO02077272.                     46   1.3    1
(AX510661) Sequence 5356 from Patent WO0216655.                    46   1.3    1
(AX349191) Sequence 117 from Patent WO0202808.                     46   1.3    1
(AX347470) Sequence 117 from Patent WO0200705.                     46   1.3    1
(AC133982) Rattus norvegicus clone CH230-200E5, WORKING DRAF...    46   1.3    1
(AC123372) Rattus norvegicus clone CH230-55M9, *** SEQUENCIN...    46   1.3    1
(AC099128) Rattus norvegicus clone CH230-61O17, *** SEQUENCI...    46   1.3    1
(AC095795) Rattus norvegicus clone CH230-9F18, *** SEQUENCIN...    46   1.3    1
(AC094315) Rattus norvegicus clone CH230-3G11, *** SEQUENCIN...    46   1.3    1
(AC177752) Strongylocentrotus purpuratus clone R3-1008A3, WO...    46   1.3    1
(EK315864) 1095462412700 Global-Ocean-Sampling_GS-31-01-01-1...    46   1.3    1
(EK280926) 1095462295081 Global-Ocean-Sampling_GS-31-01-01-1...    46   1.3    1
(ED660609) GM_WBa0082P12.f GM_WBa Glycine max genomic clone ...    46   1.3    1
(ED643062) GM_WBa0055F19.f GM_WBa Glycine max genomic clone ...    46   1.3    1
(ED601698) SALK_098166.55.50.x Arabidopsis thaliana TDNA ins...    46   1.3    1
(DU902467) 418643 Tomato HindIII BAC Library Solanum lycoper...    46   1.3    1
(BH865315) SALK_098166 Arabidopsis thaliana TDNA insertion l...    46   1.3    1
(DW974346) MSAM292433_3700_0356 LCM-dissected maize shoot ap...    46   1.3    1
(DT665627) He_wd2a1_53A10_M13R Heliconius erato wing disk 2 ...    46   1.3    1
(CP000609) Methanococcus maripaludis C5, complete genome.          46   1.3    1
(BX950229) Methanococcus maripaludis strain S2, complete seq...    46   1.3    1
(AE014845) Plasmodium falciparum 3D7 chromosome 12, section ...    38   1.3    7
(BZ696523) SP__Ba0081I11.r SP__Ba Sorghum propinquum genomic...    28   1.3    4
(AE014834) Plasmodium falciparum 3D7 chromosome 10 section 6...    34   1.3    8
(AL670259) Mouse DNA sequence from clone RP23-321M16 on chro...    34   1.4    4
(AC117075) Dictyostelium discoideum chromosome 2 map 5201047...    36   1.4    8
(AL360354) Plasmodium vivax telomeric YAC clone, complete fi...    34   1.4    9
(DK953490) Adiantum capillus-veneris mRNA, clone: TST39A01NG...    38   1.4    2
(CU075768) Zebrafish DNA sequence from clone DKEY-177P5 in l...    42   1.4    5
(AM451056) Vitis vinifera contig VV78X179379.4, whole genome...    40   1.5    3
(AC115592) Dictyostelium discoideum chromosome 2 map 1-12595...    34   1.5    7
(AC004710) Plasmodium falciparum chromosome 12, *** SEQUENCI...    36   1.5    5
(DK954157) Adiantum capillus-veneris mRNA, clone: TST39A01NG...    38   1.5    2
(AL121873) Human DNA sequence from clone RP13-362E11 on chro...    42   1.5    4
(AC219096) Zea mays chromosome 2 clone ZMMBBb-228F6; ZMMBBb0...    38   1.5    4
(AC116984) Dictyostelium discoideum chromosome 2 map 2567470...    34   1.6    10
(AC170860) Glycine max clone gmw1-57d24, complete sequence.        36   1.6    7
(AC192567) Pan troglodytes BAC clone CH251-599N13 from chrom...    38   1.6    6
(EU124732) Solanum lycopersicum chromosome 3 clone C03HBa003...    42   1.7    3
(AL929357) Plasmodium falciparum strain 3D7, chromosome 9; s...    34   1.7    10
(AC223054) Bos taurus clone CH240-431D24, WORKING DRAFT SEQU...    42   1.7    4
(AZ712375) RPCI-24-68J10.TJ RPCI-24 Mus musculus genomic clo...    34   1.7    3
(FM992688) Candida dubliniensis CD36 chromosome 1, complete ...    34   1.8    15
(AE015927) Clostridium tetani E88, complete genome.                36   1.8    18
(AP006628) Onion yellows phytoplasma OY-M DNA, complete genome.    34   1.8    11
(AE017308) Mycoplasma mobile 163K complete genome.                 30   1.8    15
(AC124870) Rattus norvegicus clone CH230-304B21, *** SEQUENC...    30   1.9    8
(DN332037) LIB3184-027-P2-K1-A12 LIB3184 Canis lupus familia...    34   1.9    2
(AL035477) Plasmodium falciparum MAL4P4.                           42   1.9    7
(BH981217) odf77h12.b1 B.oleracea002 Brassica oleracea genom...    34   1.9    2
(AE009951) Fusobacterium nucleatum subsp. nucleatum ATCC 255...    34   1.9    19
(AF063866) Melanoplus sanguinipes entomopoxvirus, complete g...    32   2.0    9
(AP005709) Oryza sativa Japonica Group genomic DNA, chromoso...    34   2.0    5
(CR819063) GR0AAA47BC05FM1 INRA BAC Bos taurus genomic clone...    36   2.0    2
(CX400155) JGI_XZT4266.rev NIH_XGC_tropTad5 Xenopus (Siluran...    42   2.0    2
(AC116960) Dictyostelium discoideum chromosome 2 map complem...    32   2.1    8
(ER307353) 1092343764603 Global-Ocean-Sampling_GS-34-01-01-1...    34   2.1    3
(AC117070) Dictyostelium discoideum chromosome 2 map 2097701...    38   2.1    7
(AC146863) Medicago truncatula chromosome 6 clone mth2-175h2...    34   2.2    5
(CZ967956) 167444 Tomato MboI BAC Library Solanum lycopersic...    30   2.2    3
(EJ741119) 1092962019579 Global-Ocean-Sampling_GS-30-02-01-1...    34   2.2    2
(CU469231) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    38   2.3    5
(AL929351) Plasmodium falciparum strain 3D7, chromosome 5, s...    40   2.3    9
(AC140975) Papio hamadryas clone RP41-202P6, WORKING DRAFT S...    34   2.3    6
(AC011729) Homo sapiens clone RP11-16L12, WORKING DRAFT SEQU...    38   2.4    3
(AC137521) Medicago truncatula clone mth2-11o9, WORKING DRAF...    34   2.4    9
(EJ748282) 1092963016475 Global-Ocean-Sampling_GS-30-02-01-1...    34   2.4    2
(AC133831) Rattus norvegicus clone CH230-140J22, *** SEQUENC...    34   2.4    2
(EU400212) Madracis mirabilis mitochondrion, complete genome.      40   2.5    3
(AL929464) Zebrafish DNA sequence from clone CH211-255L14 in...    32   2.5    2
(AC161093) Saimiri boliviensis boliviensis clone CH254-343B2...    36   2.5    5
(AC005506) Plasmodium falciparum chromosome 12 clone PFYAC35...    32   2.5    9
(AM430583) Vitis vinifera contig VV78X160635.12, whole genom...    38   2.5    3
(CR954959) Zebrafish DNA sequence from clone DKEY-234B16 in ...    32   2.5    2
(AC171131) Helobdella robusta clone CH306-1A2, complete sequ...    34   2.5    4
(AC171127) Helobdella robusta clone CH306-1A1, complete sequ...    34   2.5    4
(AC147688) Macaca mulatta clone CH250-409H1, WORKING DRAFT S...    42   2.7    3
(AC117176) Dictyostelium discoideum chromosome 2 map 5018074...    34   2.7    7
(AC184427) Strongylocentrotus purpuratus clone R3-3078O6, WO...    42   2.8    5
(AL732488) Zebrafish DNA sequence from clone RP71-1C10 in li...    42   2.9    3
(BX927304) Zebrafish DNA sequence *** SEQUENCING CANCELLED *...    40   2.9    3
(AC146783) Medicago truncatula chromosome 8 clone mth2-115m1...    40   2.9    3
(AC004709) Plasmodium falciparum chromosome 12, *** SEQUENCI...    32   2.9    8
(AC011697) Drosophila melanogaster clone BACR12J05, complete...    40   3.0    5
(CR848801) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    40   3.0    3
(AC125095) Mus musculus BAC clone RP24-179H12 from chromosom...    36   3.0    7
(AY863213) Smittium culisetae mitochondrion, complete genome.      34   3.0    6
(AL049870) Human chromosome 14 DNA sequence BAC R-857B24 of ...    32   3.1    5
(AC187539) Solanum lycopersicum cv. Heinz 1706, chromosome 7...    36   3.1    4
(CL024071) CH216-19A5_Sp6.1 CH216 Xenopus (Silurana) tropica...    34   3.2    2
(AL954309) Zebrafish DNA sequence from clone CH211-213D2 in ...    38   3.3    5
(CU928396) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    34   3.3    6
(FI128298) MUGQ_CH252P507L08T7_CH0230_022 CHORI-252 Vervet M...    32   3.3    2
(CP000123) Mycoplasma capricolum subsp. capricolum ATCC 2734...    32   3.3    14
(BH593993) BOHAO74TR BOHA Brassica oleracea genomic clone BO...    32   3.3    2
(BX154630) Danio rerio genomic clone DKEY-119G5, genomic sur...    32   3.4    2
(AC093909) Homo sapiens BAC clone RP11-756P10 from 4, comple...    38   3.4    4
(AE017245) Mycoplasma synoviae 53, complete genome.                36   3.4    12
(AJ235271) Rickettsia prowazekii strain Madrid E, complete g...    34   3.5    7
(AF066934) Dolichovespula saxonica 16S ribosomal RNA gene, m...    28   3.5    3
(AC178776) Strongylocentrotus purpuratus clone R3-3001J04, W...    44   3.7    7
(AM441575) Vitis vinifera, whole genome shotgun sequence, co...    34   3.7    5
(AL031586) Human DNA sequence from clone RP3-324C6 on chromo...    38   3.7    4
(AE014818) Plasmodium falciparum 3D7 chromosome 14 section 3...    32   3.8    8
(AC178750) Strongylocentrotus purpuratus clone R3-16D1, WORK...    40   3.8    6
(AM698041) Vanderwaltozyma polyspora partial mitochondrial g...    36   3.8    3
(AL591107) Human DNA sequence *** SEQUENCING IN PROGRESS ***...    38   3.8    6
(AC179767) Strongylocentrotus purpuratus clone R3-1016H24, W...    34   3.8    6
(AC155282) Medicago truncatula chromosome 2 clone mth2-63e12...    34   3.8    7
(AE014833) Plasmodium falciparum 3D7 chromosome 10 section 5...    36   3.9    7
(AC116956) Dictyostelium discoideum chromosome 2 map 1418423...    34   4.0    9
(CR759922) Zebrafish DNA sequence from clone DKEY-253F15 in ...    36   4.0    3
(CU076099) Zebrafish DNA sequence from clone CH211-51H21 in ...    34   4.1    5
(AC181382) Strongylocentrotus purpuratus clone R3-1114M19, W...    38   4.2    4
(DQ927303) Tetrahymena malaccensis strain MP75 mitochondrion...    44   4.2    3
(AC184908) Bos taurus clone CH240-79G15, WORKING DRAFT SEQUE...    38   4.2    3
(EV430679) 210799785 NVP Nasonia vitripennis cDNA clone 188G...    38   4.2    2
(AC200911) Pan troglodytes chromosome X clone CH251-595H10, ...    38   4.2    3
(CP000236) Ehrlichia chaffeensis str. Arkansas, complete gen...    36   4.3    13
(AC124972) Medicago truncatula clone mth2-24j4, complete seq...    38   4.4    4
(AC015102) Drosophila melanogaster, *** SEQUENCING IN PROGRE...    40   4.4    3
(CT868689) Pig DNA sequence from clone CH242-518H14 on chrom...    40   4.4    5
(AC151864) Colobus guereza clone CH272-239B16, WORKING DRAFT...    34   4.4    6
(EB911234) 9178772 ZF31 Danio rerio cDNA clone 3255598, mRNA...    32   4.5    3
(AC177683) Strongylocentrotus purpuratus clone R3-1013M16, W...    44   4.6    4
(FB571381) Sequence 248 from Patent EP1865317.                     30   4.6    9
(FB571325) Sequence 192 from Patent EP1865317.                     30   4.6    9
(AC180768) Strongylocentrotus purpuratus clone R3-3022O11, W...    34   4.6    7
(AC011281) Homo sapiens clone RP11-13L19, WORKING DRAFT SEQU...    38   4.8    7
(DQ384495) Homo sapiens clone fa0670 genomic sequence.             38   4.8    2
(AC156557) Mus musculus chromosome 7, clone RP23-321F8, comp...    42   4.8    4
(AM640488) Entamoeba dispar GSS, clone dispar75b11.p1k.            30   4.9    3
(EI350716) GM_WBc0099D09.r GM_WBc Glycine max genomic clone ...    34   4.9    2
(AC116979) Dictyostelium discoideum chromosome 2 map 6445720...    32   4.9    9
(AL034558) Plasmodium falciparum MAL3P2.                           32   4.9    6
(CT030237) Zebrafish DNA sequence from clone DKEY-105M5 in l...    44   5.0    1
(G48910) SHGC-77827 Human Homo sapiens STS genomic, sequence...    44   5.0    1
(AC151992) Mus musculus BAC clone RP23-212H13 from chromosom...    44   5.0    1
(AC132391) Mus musculus BAC clone RP23-454N21 from chromosom...    44   5.0    1
(AC205921) Pongo abelii BAC clone CH276-479M4 from chromosom...    44   5.0    1
(AC186877) Pan troglodytes BAC clone CH251-642J15 from chrom...    44   5.0    1
(CU457754) S.lycopersicum DNA sequence from clone LE_HBa-204...    44   5.0    1
(AC108059) Homo sapiens BAC clone RP11-398G9 from 2, complet...    44   5.0    1
(AC007103) Homo sapiens chromosome 4 clone C0190D22 map 4p16...    44   5.0    1
(AC162417) Bos taurus clone CH240-114I7, WORKING DRAFT SEQUE...    44   5.0    1
(AC117907) Rattus norvegicus clone CH230-379N17, WORKING DRA...    44   5.0    1
(AC111329) Rattus norvegicus clone CH230-342G6, WORKING DRAF...    44   5.0    1
(AC080169) Mus musculus clone RP23-347L24, WORKING DRAFT SEQ...    44   5.0    1
(AC073778) Mus musculus clone RP23-387N18, WORKING DRAFT SEQ...    44   5.0    1
(CU138534) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    44   5.0    1
(CR848701) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    44   5.0    1
(AC224654) Bos taurus clone CH240-479H15, WORKING DRAFT SEQU...    44   5.0    1
(AC219631) Bos taurus clone CH240-327B10, WORKING DRAFT SEQU...    44   5.0    1
(AC184637) Strongylocentrotus purpuratus clone R3-1005M13, W...    44   5.0    1
(AC184609) Strongylocentrotus purpuratus clone R3-3084G12, W...    44   5.0    1
(AC181294) Strongylocentrotus purpuratus clone R3-3040L13, W...    44   5.0    1
(AC177704) Strongylocentrotus purpuratus clone R3-1011K14, W...    44   5.0    1
(AC177062) Strongylocentrotus purpuratus clone R3-4004G3, WO...    44   5.0    1
(AC171223) Bos taurus clone CH240-274H9, WORKING DRAFT SEQUE...    44   5.0    1
(AC165579) Bos taurus clone CH240-170M4, WORKING DRAFT SEQUE...    44   5.0    1
(FI309892) AdH1180-CPY2-M6TR AdH1 Arachis duranensis genomic...    44   5.0    1
(EK258573) 1095462049643 Global-Ocean-Sampling_GS-31-01-01-1...    44   5.0    1
(EK190879) 1095460018295 Global-Ocean-Sampling_GS-31-01-01-1...    44   5.0    1
(EK190130) 1095460015744 Global-Ocean-Sampling_GS-31-01-01-1...    44   5.0    1
(EK177150) 1095458103303 Global-Ocean-Sampling_GS-31-01-01-1...    44   5.0    1
(EK152597) 1095456059666 Global-Ocean-Sampling_GS-31-01-01-1...    44   5.0    1
(EJ906891) 1093018517525 Global-Ocean-Sampling_GS-30-02-01-1...    44   5.0    1
(EJ821362) 1093017539385 Global-Ocean-Sampling_GS-30-02-01-1...    44   5.0    1
(AQ109246) CIT-HSP-2375F24.TR CIT-HSP Homo sapiens genomic c...    44   5.0    1
(EJ724929) 1092959490942 Global-Ocean-Sampling_GS-30-02-01-1...    44   5.0    1
(EJ526842) 1092955190780 Global-Ocean-Sampling_GS-29-01-01-1...    44   5.0    1
(EJ302851) 1095390047499 Global-Ocean-Sampling_GS-27-01-01-1...    44   5.0    1
(EJ276070) 1095366020889 Global-Ocean-Sampling_GS-27-01-01-1...    44   5.0    1
(EJ232794) 1092404037700 Global-Ocean-Sampling_GS-27-01-01-1...    44   5.0    1
(ED782373) GM_WBb0162A07.f GM_WBb Glycine max genomic clone ...    44   5.0    1
(CE824808) tigr-gss-dog-17000318983269 Dog Library Canis lup...    44   5.0    1
(CC500188) CH240_338E1.T7 CHORI-240 Bos taurus genomic clone...    44   5.0    1
(B84626) RPCI11-26N7.TV RPCI-11 Homo sapiens genomic clone R...    44   5.0    1
(BH995794) oed94h05.g1 B.oleracea002 Brassica oleracea genom...    44   5.0    1
(AG043333) Pan troglodytes DNA, clone: PTB-021J21.F.               44   5.0    1
(EL843980) CBXT4678.g1 NICHD_XGC_trop_25 Xenopus (Silurana) ...    44   5.0    1
(EL843978) CBXT4677.g1 NICHD_XGC_trop_25 Xenopus (Silurana) ...    44   5.0    1
(EL840392) CBXT2383.g1 NICHD_XGC_trop_25 Xenopus (Silurana) ...    44   5.0    1
(EL474691) CHUL2636.b1_H12.ab1 CHU(LMS) puzzle sunflower Hel...    44   5.0    1
(EC992443) WIN1145.C21_H19 Muscat Hamburg pre-veraison berry...    44   5.0    1
(EB646507) AGENCOURT_75548257 NICHD_XGC_thy Xenopus laevis c...    44   5.0    1
(DY977277) CLSS11043.b1_F02.ab1 CLS(LMS) lettuce sativa Lact...    44   5.0    1
(DY734880) EST_ssal_rgb2_90619 ssalrgb2 mixed_tissue Salmo s...    44   5.0    1
(DY226579) ID0AAI8YM14RM1 ID0AEE Acyrthosiphon pisum cDNA cl...    44   5.0    1
(DW134021) CLSY1502.b1_L16.ab1 CLS(XYZ) lettuce sativa Lactu...    44   5.0    1
(DW123129) CLRZ5520.b1_P11.ab1 CLR(XYZ) lettuce serriola Lac...    44   5.0    1
(DW116465) CLRY4556.b1_H12.ab1 CLR(XYZ) lettuce serriola Lac...    44   5.0    1
(DC162588) Xenopus (Silurana) tropicalis NBRP cDNA clone: rs...    44   5.0    1
(DC135519) Xenopus (Silurana) tropicalis NBRP cDNA clone: rs...    44   5.0    1
(CX583701) TTE00022993 Amplicon Express - Conjugative Form T...    44   5.0    1
(CX581741) TTE00030257 Amplicon Express - Conjugative Form T...    44   5.0    1
(CX579568) TTE00022168 Amplicon Express - Conjugative Form T...    44   5.0    1
(CX577918) TTE00025401 Amplicon Express - Conjugative Form T...    44   5.0    1
(CX573908) TTE00033761 Amplicon Express - Conjugative Form T...    44   5.0    1
(CX506403) JGI_XZG42520.fwd NIH_XGC_tropGas7 Xenopus (Silura...    44   5.0    1
(CX506402) JGI_XZG42520.rev NIH_XGC_tropGas7 Xenopus (Silura...    44   5.0    1
(CX490828) JGI_XZG33478.fwd NIH_XGC_tropGas7 Xenopus (Silura...    44   5.0    1
(CX490827) JGI_XZG33478.rev NIH_XGC_tropGas7 Xenopus (Silura...    44   5.0    1
(CX488960) JGI_XZG32400.rev NIH_XGC_tropGas7 Xenopus (Silura...    44   5.0    1
(CX487994) JGI_XZG30012.rev NIH_XGC_tropGas7 Xenopus (Silura...    44   5.0    1
(CX436728) JGI_XZG59290.rev NIH_XGC_tropGas7 Xenopus (Silura...    44   5.0    1
(CX435819) JGI_XZG58765.rev NIH_XGC_tropGas7 Xenopus (Silura...    44   5.0    1
(CX418210) JGI_XZG65410.rev NIH_XGC_tropGas7 Xenopus (Silura...    44   5.0    1
(CX406154) JGI_XZT61516.fwd NIH_XGC_tropTad5 Xenopus (Silura...    44   5.0    1
(CX399016) JGI_XZT3564.fwd NIH_XGC_tropTad5 Xenopus (Siluran...    44   5.0    1
(CX399015) JGI_XZT3564.rev NIH_XGC_tropTad5 Xenopus (Siluran...    44   5.0    1
(CX344452) JGI_XZT23581.rev NIH_XGC_tropTad5 Xenopus (Silura...    44   5.0    1
(CX338350) JGI_XZT60128.rev NIH_XGC_tropTad5 Xenopus (Silura...    44   5.0    1
(CV849237) ID0AEE7DB06RM1 ID0AEE Acyrthosiphon pisum cDNA cl...    44   5.0    1
(AL794535) Xenopus tropicalis EST, clone TNeu113l12 5'.            44   5.0    1
(AL635420) Xenopus tropicalis EST, clone TNeu007d17 5'.            44   5.0    1
(BX745805) Xenopus tropicalis EST, clone TGas065l10 3'.            44   5.0    1
(BX701200) Xenopus tropicalis EST, clone TNeu113l10 3'.            44   5.0    1
(BU010449) QGJ13H17.yg.ab1 QG_EFGHJ lettuce serriola Lactuca...    44   5.0    1
(GE425867) 294515761 Nasonia vitripennis Adult Male Nasonia ...    44   5.0    1
(GE379580) 292355530 Nasonia vitripennis Male Pupae Nasonia ...    44   5.0    1
(GE360438) 292282241 Nasonia vitripennis Male Pupae Nasonia ...    44   5.0    1
(GD972794) 454GmaGlobSeed715443 Soybean Seeds Containing Glo...    44   5.0    1
(GD726529) 454GmaGlobSeed469178 Soybean Seeds Containing Glo...    44   5.0    1
(FF577615) TTECZ44THB Tetrahymena thermophila conjugation cD...    44   5.0    1
(FF576960) TTEEI28THB Tetrahymena thermophila conjugation cD...    44   5.0    1
(FF575620) TTEFL24THB Tetrahymena thermophila conjugation cD...    44   5.0    1
(FF572421) TTEC849THB Tetrahymena thermophila conjugation cD...    44   5.0    1
(FF572013) TTEBZ27THB Tetrahymena thermophila conjugation cD...    44   5.0    1
(FF565377) TT1BI32TV Tetrahymena thermophila SB210 cDNA libr...    44   5.0    1
(FF565376) TT1BI32TH Tetrahymena thermophila SB210 cDNA libr...    44   5.0    1
(EX834465) CBNB4571.fwd CBNB Phycomyces blakesleeanus NRRL15...    44   5.0    1
(EX377381) GQ03234.B7_I01 GQ032 - Shoot tip (Normalized libr...    44   5.0    1
(EV832978) TT1DC04TV Tetrahymena thermophila SB210 cDNA libr...    44   5.0    1
(EV832977) TT1DC04TH Tetrahymena thermophila SB210 cDNA libr...    44   5.0    1
(AC178689) Strongylocentrotus purpuratus clone R3-3006K14, W...    36   5.0    3
(BX511135) Zebrafish DNA sequence from clone CH211-134D21 in...    32   5.0    7
(DQ384498) Homo sapiens clone fa0739 genomic sequence.             38   5.1    2
(AE015450) Mycoplasma gallisepticum strain R complete genome.      38   5.2    11
(AG338221) Mus musculus molossinus DNA, clone:MSMg01-130H15....    30   5.3    4
(CT027637) Zebrafish DNA sequence from clone DKEY-78B4 in li...    32   5.3    6
(CU550679) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    34   5.3    6
(CX660922) ESTSi38 subtracted Libraries from sea bass challe...    40   5.4    2
(DQ384496) Homo sapiens clone fa0705 genomic sequence.             38   5.4    2
(AC178225) Strongylocentrotus purpuratus clone R3-1116H1, WO...    38   5.5    5
(AC219358) Bos taurus clone CH240-338E21, WORKING DRAFT SEQU...    34   5.5    5
(AE014828) Plasmodium falciparum 3D7 chromosome 14 section 1...    34   5.6    8
(AC009654) Homo sapiens chromosome 15, clone RP11-82L7, comp...    40   5.7    2
(AC178622) Strongylocentrotus purpuratus clone R3-3021M21, W...    34   5.7    6
(DQ384493) Homo sapiens clone fa0665 genomic sequence.             38   5.7    2
(AC005139) Plasmodium falciparum chromosome 12, *** SEQUENCI...    34   5.7    10
(AG050474) Pan troglodytes DNA, clone: PTB-030O15.R.               34   6.1    2
(FD082215) CBFH22605.b1 CBFH: Normalized blue catfish cDNA l...    36   6.2    2
(EK480415) 1095469513412 Global-Ocean-Sampling_GS-32-01-01-1...    30   6.2    3
(EV429858) 210786575 NVP Nasonia vitripennis cDNA clone 198I...    38   6.2    2
(EV431248) 210803054 NVP Nasonia vitripennis cDNA clone 183G...    38   6.2    2
(EV431788) 210814736 NVP Nasonia vitripennis cDNA clone 187G...    38   6.3    2
(EV431843) 210810159 NVP Nasonia vitripennis cDNA clone 183G...    38   6.4    2
(AY955840) Paracoccidioides brasiliensis strain Pb18 mitocho...    34   6.4    6
(AC027679) Mus musculus clone RP23-121G4, WORKING DRAFT SEQU...    38   6.4    2
(EV434250) 211407062 NVP Nasonia vitripennis cDNA clone 231A...    38   6.5    2
(AE001397) Plasmodium falciparum 3D7 chromosome 2 section 34...    40   6.6    3
(AM426637) Vitis vinifera contig VV78X072812.11, whole genom...    36   6.6    4
(AC186248) Microcebus murinus clone CH257-199G13, WORKING DR...    32   6.6    6
(EV428495) 210780406 NVP Nasonia vitripennis cDNA clone 198I...    38   6.6    2
(EV428521) 210780223 NVP Nasonia vitripennis cDNA clone 206M...    38   6.6    2
(AX344556) Sequence 7 from Patent WO0200932.                       30   6.7    9
(EV427806) 210774739 NVP Nasonia vitripennis cDNA clone 191K...    38   6.7    2
(EV434167) 211400372 NVP Nasonia vitripennis cDNA clone 231A...    38   6.8    2
(EV433560) 211376163 NVP Nasonia vitripennis cDNA clone 237A...    38   6.8    2
(AC097979) Rattus norvegicus clone CH230-44O22, *** SEQUENCI...    40   6.8    3
(EV433595) 211363106 NVP Nasonia vitripennis cDNA clone 235E...    38   6.8    2
(EV433321) 211365679 NVP Nasonia vitripennis cDNA clone 239A...    38   6.8    2
(EV433749) 211382890 NVP Nasonia vitripennis cDNA clone 237A...    38   6.8    2
(EV431066) 210800563 NVP Nasonia vitripennis cDNA clone 227G...    38   6.8    2
(EV434254) 211393568 NVP Nasonia vitripennis cDNA clone 230C...    38   6.8    2
(EV430744) 210803842 NVP Nasonia vitripennis cDNA clone 216K...    38   6.8    2
(AC148325) Mus musculus BAC clone RP24-407P18 from chromosom...    34   6.8    3
(EV425061) 210744258 NVP Nasonia vitripennis cDNA clone 207A...    38   6.9    2
(EV430146) 210798298 NVP Nasonia vitripennis cDNA clone 194I...    38   6.9    2
(EV425981) 210756015 NVP Nasonia vitripennis cDNA clone 190G...    38   6.9    2
(EV431680) 210805868 NVP Nasonia vitripennis cDNA clone 217O...    38   6.9    2
(EV430796) 210799629 NVP Nasonia vitripennis cDNA clone 188M...    38   6.9    2
(EV426993) 210768152 NVP Nasonia vitripennis cDNA clone 205O...    38   6.9    2
(EV426495) 210761428 NVP Nasonia vitripennis cDNA clone 190G...    38   6.9    2
(EV432297) 210819473 NVP Nasonia vitripennis cDNA clone 184G...    38   6.9    2
(EV432932) 210894386 NVP Nasonia vitripennis cDNA clone 193O...    38   6.9    2
(AC092323) Homo sapiens chromosome 16 clone RP11-133B5, comp...    32   6.9    6
(EV433484) 211369417 NVP Nasonia vitripennis cDNA clone 236E...    38   6.9    2
(EV425810) 210755111 NVP Nasonia vitripennis cDNA clone 212G...    38   6.9    2
(EJ645225) 1093012275129 Global-Ocean-Sampling_GS-29-01-01-1...    30   6.9    3
(EV434103) 211426258 NVP Nasonia vitripennis cDNA clone 232O...    38   7.0    2
(EV434059) 211407088 NVP Nasonia vitripennis cDNA clone 231I...    38   7.0    2
(EV433185) 211362877 NVP Nasonia vitripennis cDNA clone 236E...    38   7.0    2
(EV425163) 210748750 NVP Nasonia vitripennis cDNA clone 212G...    38   7.0    2
(EV425012) 210737634 NVP Nasonia vitripennis cDNA clone 207A...    38   7.0    2
(DH626260) Rattus norvegicus DNA, BAC clone: RNB1-160N20, 5'...    40   7.0    2
(EV434487) 211432961 NVP Nasonia vitripennis cDNA clone 232O...    38   7.0    2
(EV431076) 210799169 NVP Nasonia vitripennis cDNA clone 217O...    38   7.0    2
(EV430064) 210796751 NVP Nasonia vitripennis cDNA clone 216K...    38   7.0    2
(L36897) Saccharomyces cerevisiae mitochondrion oxi3 gene, a...    34   7.0    5
(EV429421) 210787261 NVP Nasonia vitripennis cDNA clone 226E...    38   7.0    2
(EV430453) 210798372 NVP Nasonia vitripennis cDNA clone 194O...    38   7.0    2
(EV428297) 210781172 NVP Nasonia vitripennis cDNA clone 226E...    38   7.0    2
(EV432842) 211357382 NVP Nasonia vitripennis cDNA clone 235E...    38   7.1    2
(EV429970) 210791657 NVP Nasonia vitripennis cDNA clone 194O...    38   7.1    2
(EV432679) 210887273 NVP Nasonia vitripennis cDNA clone 193I...    38   7.1    2
(EV433928) 211432940 NVP Nasonia vitripennis cDNA clone 232M...    38   7.1    2
(EV430694) 210798396 NVP Nasonia vitripennis cDNA clone 194O...    38   7.1    2
(EV433110) 210887150 NVP Nasonia vitripennis cDNA clone 193O...    38   7.1    2
(EI016924) bb05a01.r Dekkera bruxellensis Random Genomic Lib...    36   7.1    2
(EV433408) 211362359 NVP Nasonia vitripennis cDNA clone 239A...    38   7.2    2
(EV431515) 210805657 NVP Nasonia vitripennis cDNA clone 187G...    38   7.2    2
(EV425430) 210748776 NVP Nasonia vitripennis cDNA clone 212I...    38   7.2    2
(EV429921) 210793085 NVP Nasonia vitripennis cDNA clone 188M...    38   7.2    2
(EV432989) 210894431 NVP Nasonia vitripennis cDNA clone 193I...    38   7.3    2
(AX346218) Sequence 1289 from Patent WO0200928.                    30   7.3    4
(EV432659) 210827252 NVP Nasonia vitripennis cDNA clone 201E...    38   7.3    2
(EV424866) 210728980 NVP Nasonia vitripennis cDNA clone 189I...    38   7.3    2
(EV430417) 210800506 NVP Nasonia vitripennis cDNA clone 227C...    38   7.4    2
(AC181741) Strongylocentrotus purpuratus clone R3-1037H04, W...    32   7.4    6
(CG951485) MBECS18TF mth2 Medicago truncatula genomic clone ...    40   7.5    2
(EJ650948) 1092954000701 Global-Ocean-Sampling_GS-30-02-01-1...    30   7.5    3
(CR293627) mte1-1G7RM1 BAC end, cultivar Jemalong A17 of Med...    40   7.5    2
(AC122309) Mus musculus BAC clone RP23-293G2 from chromosome...    32   7.6    9
(CR380959) Candida glabrata strain CBS138 chromosome M compl...    38   7.6    11
(AE014823) Plasmodium falciparum 3D7 chromosome 14 section 8...    32   7.6    9
(FM992695) Candida dubliniensis CD36 chromosome R, complete ...    34   7.6    15
(AY456250) Gegeneophis ramaswamii mitochondrion, complete ge...    40   7.6    3
(AE014839) Plasmodium falciparum 3D7 chromosome 11 section 4...    32   7.6    9
(AL929356) Plasmodium falciparum strain 3D7, chromosome 9; s...    34   7.7    11
(AC006023) Homo sapiens PAC clone RP5-1147A1 from 7p14-p12, ...    34   7.7    4
(EK297305) 1095462351484 Global-Ocean-Sampling_GS-31-01-01-1...    38   7.8    2
(EJ074476) 1095458111151 Global-Ocean-Sampling_GS-26-01-01-1...    36   7.8    2
(EK232845) 1095460186347 Global-Ocean-Sampling_GS-31-01-01-1...    34   7.9    2
(EV429897) 210793088 NVP Nasonia vitripennis cDNA clone 188A...    38   7.9    2
(AC010810) Homo sapiens clone RP11-3E13, WORKING DRAFT SEQUE...    42   7.9    3
(AC168497) Strongylocentrotus purpuratus clone R3-3117D9, WO...    36   8.0    5
(AC233830) Monodelphis domestica clone VMRC18-580J21, WORKIN...    40   8.0    3
(EU877950) Sphaerius sp. BT0074 mitochondrion, complete genome.    36   8.0    2
(BZ386580) EINDD94TR EI_10_12_KB Entamoeba invadens genomic ...    36   8.0    2
(AX195074) Sequence 544 from Patent WO0151659.                     38   8.1    4
(AC192598) Pan troglodytes BAC clone CH251-443N17 from chrom...    38   8.1    5
(CR855273) Zebrafish DNA sequence from clone DKEYP-34E1 in l...    36   8.1    4
(AC170569) Bos taurus clone CH240-214H1, WORKING DRAFT SEQUE...    38   8.2    5
(EJ896046) 1093018467018 Global-Ocean-Sampling_GS-30-02-01-1...    34   8.2    2
(BX005461) Zebrafish DNA sequence from clone DKEY-192L18 in ...    38   8.3    4
(AC181700) Strongylocentrotus purpuratus clone R3-3102I11, W...    38   8.3    3
(CG965480) MBENJ53TF mth2 Medicago truncatula genomic clone ...    40   8.3    2
(CZ539174) SRAA-aad24b02.b1 Strongyloides ratti whole genome...    40   8.3    2
(AC226665) Monodelphis domestica clone VMRC18-400C1, WORKING...    40   8.3    3
(BX510643) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    34   8.4    6
(DX421424) BE1074_P06_F IASMA L1 HindIII BAC library Vitis v...    36   8.4    2
(AF538053) Monosiga brevicollis mitochondrion, complete genome.    32   8.4    6
(EU004203) Saccharomyces cerevisiae YJM789 mitochondrion, co...    30   8.4    8
(AM439472) Vitis vinifera, whole genome shotgun sequence, co...    42   8.5    4
(AC184675) Strongylocentrotus purpuratus clone R3-1005F6, WO...    34   8.5    5
(DN568383) 90222094 Sea Urchin primary mesenchyme cell cDNA ...    32   8.5    3
(CR940348) Theileria annulata genomic DNA chromosome 2.            36   8.6    17
(AC178459) Strongylocentrotus purpuratus clone R3-3039M24, W...    36   8.6    3
(AX392737) Sequence 27 from Patent WO0212526.                      36   8.6    5
(AR707084) Sequence 27 from patent US 6933145.                     36   8.6    5
(AC179003) Strongylocentrotus purpuratus clone R3-3123C11, W...    34   8.7    3
(BX957243) Zebrafish DNA sequence from clone CH211-259M22 in...    34   8.7    3
(AF178444) Aspergillus niger strain B102 tRNA-Phe, tRNA-Leu,...    32   8.8    3
(AC095222) Rattus norvegicus clone CH230-9M16, WORKING DRAFT...    32   8.8    2
(AC096102) Rattus norvegicus clone CH230-27H15, WORKING DRAF...    32   8.9    2
(AC016532) Homo sapiens chromosome 6 clone RP11-343I16 map 6...    34   8.9    4
(EF633601) Seriatopora caliendrum mitochondrion, complete ge...    40   8.9    2
(EJ864232) 1093018253497 Global-Ocean-Sampling_GS-30-02-01-1...    34   8.9    2
(EF633600) Seriatopora hystrix mitochondrion, complete genome.     40   8.9    2
(AC131829) Rattus norvegicus clone CH230-311L8, *** SEQUENCI...    30   8.9    2
(EU400214) Stylophora pistillata mitochondrion, complete gen...    40   8.9    2
(DQ826675) Clostridium taeniosporum strain I/K hypothetical ...    34   9.0    3
(CR956368) M.truncatula DNA sequence from clone MTH2-64D19 o...    36   9.0    6
(AC007602) Homo sapiens chromosome 16 clone RP11-2D4, comple...    38   9.0    4
(AC201024) Strongylocentrotus purpuratus clone R3-12I10, WOR...    42   9.0    3
(AC195452) Glycine tomentella clone gtt1-5b15, complete sequ...    30   9.0    2
(AC175781) Cavia porcellus clone CH234-402D11, complete sequ...    32   9.0    2
(EJ642181) 1093011960809 Global-Ocean-Sampling_GS-29-01-01-1...    30   9.1    3
(AC168699) Strongylocentrotus purpuratus clone R3-3014B5, WO...    38   9.1    3
(AF178443) Aspergillus niger strain SZMC 0851/12 tRNA-Phe, t...    32   9.1    3
(EJ823147) 1093017547472 Global-Ocean-Sampling_GS-30-02-01-1...    38   9.1    2
(AC116330) Dictyostelium discoideum chromosome 2 map 3191214...    32   9.1    8
(AC150211) Otolemur garnettii clone CH256-340G16, WORKING DR...    38   9.1    4
(AC139526) Medicago truncatula clone mth2-9b23, complete seq...    38   9.2    5
(AC173560) Strongylocentrotus purpuratus clone R3-16N1, WORK...    34   9.2    3
(CU915329) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    42   9.5    3
(AC225568) Mus musculus chromosome Y clone CH36-527P8, WORKI...    34   9.5    3
(CP000361) Arcobacter butzleri RM4018, complete genome.            34   9.6    18
(CU694658) Zebrafish DNA sequence from clone CH73-93C7 in li...    34   9.7    3
(AC203498) Pteropus vampyrus clone CH279-366O13, WORKING DRA...    34   9.9    5
(BX890550) Zebrafish DNA sequence from clone DKEYP-110B6 in ...    34   10.0   4

>(AU072662) Dictyostelium discoideum slug cDNA, clone SSA483.
          Length = 240

 Score =  476 bits (240), Expect = e-130
 Identities = 240/240 (100%)
 Strand = Plus / Plus


Query: 1   gaatttataatgaaaccattattaaagattatgttatatcttggtaaaattgaagaatct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   gaatttataatgaaaccattattaaagattatgttatatcttggtaaaattgaagaatct 60


Query: 61  tatatattattattatcatttgttaatcaataccctttgaatcctattggttatatttta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  tatatattattattatcatttgttaatcaataccctttgaatcctattggttatatttta 120


Query: 121 ttaggatcatatttaattgaacataaatcaaatgatacagataaaattatacattgttat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ttaggatcatatttaattgaacataaatcaaatgatacagataaaattatacattgttat 180


Query: 181 agaactttaataaatttagatccaatttcaaataatgcatttagtgttttacttcaatta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 agaactttaataaatttagatccaatttcaaataatgcatttagtgttttacttcaatta 240

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 102105510
Number of Hits to DB: 788,776,239
Number of extensions: 55780618
Number of successful extensions: 5235114
Number of sequences better than 10.0: 496
Length of query: 499
Length of database: 101,790,757,118
Length adjustment: 23
Effective length of query: 476
Effective length of database: 99,442,330,388
Effective search space: 47334549264688
Effective search space used: 47334549264688
X1: 11 (21.8 bits)
S2: 21 (42.1 bits)
protein update 2009. 7.30
Homology vs Protein 
Query= Contig-U04403-1 (Contig-U04403-1Q) /CSM_Contig/Contig-U04403-1Q.Seq.d
         (499 letters)

Database: nrp_A
           3,268,448 sequences; 1,061,185,681 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BA000043_2562(BA000043|pid:none) Geobacillus kaustophilus HTA426...    38   0.15
BA000028_2013(BA000028|pid:none) Oceanobacillus iheyensis HTE831...    37   0.34
AF1263(AF1263) hypothetical protein lmo1510 [imported] - Listeri...    36   0.58
AH1625(AH1625) hypothetical protein homolog lin1545 [imported] -...    36   0.58
AM263198_1523(AM263198|pid:none) Listeria welshimeri serovar 6b ...    36   0.58
AE017262_1514(AE017262|pid:none) Listeria monocytogenes str. 4b ...    36   0.58
CP000557_2453(CP000557|pid:none) Geobacillus thermodenitrificans...    35   0.76
CP001638_2249(CP001638|pid:none) Geobacillus sp. WCH70, complete...    35   0.76
AP009180_36(AP009180|pid:none) Candidatus Carsonella ruddii PV D...    34   1.7
CU468230_2151(CU468230|pid:none) Acinetobacter baumannii str. SD...    33   2.9
CP000503_1367(CP000503|pid:none) Shewanella sp. W3-18-1, complet...    33   2.9
CR543861_2440(CR543861|pid:none) Acinetobacter sp. ADP1 complete...    33   3.8
CP000721_4516(CP000721|pid:none) Clostridium beijerinckii NCIMB ...    33   4.9
(Q7K4B6) RecName: Full=Transmembrane and TPR repeat-containing p...    33   4.9
(Q5HKQ0) RecName: Full=Biofilm PIA synthesis N-acetylglucosaminy...    32   6.4
CP000393_2505(CP000393|pid:none) Trichodesmium erythraeum IMS101...    32   6.4
CP001022_2041(CP001022|pid:none) Exiguobacterium sibiricum 255-1...    32   6.4
BA000033_1570(BA000033|pid:none) Staphylococcus aureus subsp. au...    32   8.4
CP000817_3711(CP000817|pid:none) Lysinibacillus sphaericus C3-41...    32   8.4

>BA000043_2562(BA000043|pid:none) Geobacillus kaustophilus HTA426
           DNA, complete genome.
          Length = 220

 Score = 37.7 bits (86), Expect = 0.15
 Identities = 19/71 (26%), Positives = 39/71 (54%)
 Frame = +1

Query: 43  GKIEESYILLLSFVNQYPLNPIGYILLGSYLIEHKSNDTDKIIHCYRTLINLDPISNNAF 222
           GK EE+     + V Q+P +P GYI +G+ L+   + + +K + C+R  + +D  +  A+
Sbjct: 15  GKYEEAIRCFSAAVEQHPDDPAGYINIGTVLV--AAGEEEKALDCFRQALKIDKKAAAAY 72

Query: 223 SVLLQLYYSTQ 255
             +  ++Y  +
Sbjct: 73  YGMGTVHYKRE 83

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3268448
Number of Hits to DB: 561,365,435
Number of extensions: 9155397
Number of successful extensions: 22239
Number of sequences better than 10.0: 19
Number of HSP's gapped: 22167
Number of HSP's successfully gapped: 19
Length of query: 166
Length of database: 1,061,185,681
Length adjustment: 119
Effective length of query: 47
Effective length of database: 672,240,369
Effective search space: 31595297343
Effective search space used: 31595297343
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 30 (16.2 bits)
PSORT 

 psg: 0.82  gvh: 0.41  alm: 0.42  top: 0.53  tms: 0.00  mit: 0.23  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 36.0 %: nuclear
	  8.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for Contig-U04403-1 is cyt
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 1
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0