Contig-U04401-1
Contig ID Contig-U04401-1
Contig update 2002. 9.13
Contig sequence
>Contig-U04401-1 (Contig-U04401-1Q) /CSM_Contig/Contig-U04401-1Q.Seq.d
GGTACTGAAGAGGGTGTCATTTGTCAAGCTGGTCGTCATGGTAATAGAAT
CGTTATGAATGAACGTTATAAAGGACACTTTGGTCCAATCACCTCGGTTG
ATTTACATCCATCAAAGGGTGGTGCCGATTTCTCACAATATTTCCTCAGT
TCTTCAACAGATTGGACTTGTAAATTATGGTCATCCAAAAAAGAGACTCC
ACTTTACTCTTTTGAAGATTATGTCGATTACGTTTATGATGCACGTTGGT
CACCAGTTCATCCATCTATTTTCTCAACTGGTGATGGTAGTGGTACACTT
TCACTCTGGGATNTCAATCAAGATTTAGAAGCACCAATCTTTCGTCATAA
AATTTCAAATAGATCTGTTAATCGTCTTGCTTGGAGTCATGATGGTAAAC
GTATATTAGTTGGTGATTCTGGTGGTTCACTCTCTCTCTTTGATTCAAGT
GAATTCTCTTCTCCAACTTCTGAAGAATATTCTCAATTTGAAGATGTTAT
GACTAAAATGGTTAATAAATCTAGAACTTCTGATTCACCATTATTAGGTG
AAGGTTAAAATCAAGAATAAAATAAATAAATAAATAAAAACAAAAAAAAT
TTAAAAATAAATAAAAAAAAA

Gap no gap
Contig length 621
Chromosome number (1..6, M) 3
Chromosome length 6358359
Start point 3846672
End point 3846051
Strand (PLUS/MINUS) MINUS
Number of clones 1
Number of EST 1
Link to clone list U04401
List of clone(s)

est1=SSA479Z,1,622
Translated Amino Acid sequence
GTEEGVICQAGRHGNRIVMNERYKGHFGPITSVDLHPSKGGADFSQYFLSSSTDWTCKLW
SSKKETPLYSFEDYVDYVYDARWSPVHPSIFSTGDGSGTLSLWDXNQDLEAPIFRHKISN
RSVNRLAWSHDGKRILVGDSGGSLSLFDSSEFSSPTSEEYSQFEDVMTKMVNKSRTSDSP
LLGEG*nqe*nk*inknkknlkinkkk


Translated Amino Acid sequence (All Frames)
Frame A:
GTEEGVICQAGRHGNRIVMNERYKGHFGPITSVDLHPSKGGADFSQYFLSSSTDWTCKLW
SSKKETPLYSFEDYVDYVYDARWSPVHPSIFSTGDGSGTLSLWDXNQDLEAPIFRHKISN
RSVNRLAWSHDGKRILVGDSGGSLSLFDSSEFSSPTSEEYSQFEDVMTKMVNKSRTSDSP
LLGEG*nqe*nk*inknkknlkinkkk


Frame B:
vlkrvsfvklvvmviesl*mnvikdtlvqsprliyihqrvvpishnissvlqqiglvnyg
hpkkrlhftllkimsitfmmhvghqfihlfsqlvmvvvhfhsgxsiki*khqsfvikfqi
dllivllgvmmvnvy*lvilvvhslsliqvnsllqllknilnlkml*lkwlinlellihh
y*vkvkiknkink*iktkki*k*ikk


Frame C:
y*rgchlsswssw**nrye*tl*rtlwsnhlg*ftsikgwcrfltifpqffnrldl*imv
iqkrdstllf*rlcrlrl*ctlvtsssiyflnw*w*wytftlgxqsrfrstnlss*nfk*
ic*sscles*w*tyisw*fwwftlsl*fk*ilfsnf*rifsi*rcyd*ng**i*nf*fti
ir*rlksrik*ink*kqkkfknk*kk


own update 2004. 6.10
Homology vs CSM-cDNA
Query= Contig-U04401-1 (Contig-U04401-1Q)
/CSM_Contig/Contig-U04401-1Q.Seq.d
(621 letters)

Database: CSM
6905 sequences; 5,674,871 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U04401-1 (Contig-U04401-1Q) /CSM_Contig/Conti... 1094 0.0
Contig-U10201-1 (Contig-U10201-1Q) /CSM_Contig/Conti... 36 0.043
Contig-U11004-1 (Contig-U11004-1Q) /CSM_Contig/Conti... 34 0.17
Contig-U09331-1 (Contig-U09331-1Q) /CSM_Contig/Conti... 34 0.17
Contig-U14191-1 (Contig-U14191-1Q) /CSM_Contig/Conti... 32 0.68
Contig-U11397-1 (Contig-U11397-1Q) /CSM_Contig/Conti... 32 0.68
Contig-U11384-1 (Contig-U11384-1Q) /CSM_Contig/Conti... 32 0.68
Contig-U11101-1 (Contig-U11101-1Q) /CSM_Contig/Conti... 32 0.68
Contig-U10734-1 (Contig-U10734-1Q) /CSM_Contig/Conti... 32 0.68
Contig-U10646-1 (Contig-U10646-1Q) /CSM_Contig/Conti... 32 0.68

>Contig-U04401-1 (Contig-U04401-1Q) /CSM_Contig/Contig-U04401-1Q.Seq.d
Length = 621

Score = 1094 bits (552), Expect = 0.0
Identities = 555/555 (100%)
Strand = Plus / Plus


Query: 1 ggtactgaagagggtgtcatttgtcaagctggtcgtcatggtaatagaatcgttatgaat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggtactgaagagggtgtcatttgtcaagctggtcgtcatggtaatagaatcgttatgaat 60


Query: 61 gaacgttataaaggacactttggtccaatcacctcggttgatttacatccatcaaagggt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gaacgttataaaggacactttggtccaatcacctcggttgatttacatccatcaaagggt 120


Query: 121 ggtgccgatttctcacaatatttcctcagttcttcaacagattggacttgtaaattatgg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ggtgccgatttctcacaatatttcctcagttcttcaacagattggacttgtaaattatgg 180


Query: 181 tcatccaaaaaagagactccactttactcttttgaagattatgtcgattacgtttatgat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tcatccaaaaaagagactccactttactcttttgaagattatgtcgattacgtttatgat 240


Query: 241 gcacgttggtcaccagttcatccatctattttctcaactggtgatggtagtggtacactt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 gcacgttggtcaccagttcatccatctattttctcaactggtgatggtagtggtacactt 300


Query: 301 tcactctgggatntcaatcaagatttagaagcaccaatctttcgtcataaaatttcaaat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tcactctgggatntcaatcaagatttagaagcaccaatctttcgtcataaaatttcaaat 360


Query: 361 agatctgttaatcgtcttgcttggagtcatgatggtaaacgtatattagttggtgattct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 agatctgttaatcgtcttgcttggagtcatgatggtaaacgtatattagttggtgattct 420


Query: 421 ggtggttcactctctctctttgattcaagtgaattctcttctccaacttctgaagaatat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 ggtggttcactctctctctttgattcaagtgaattctcttctccaacttctgaagaatat 480


Query: 481 tctcaatttgaagatgttatgactaaaatggttaataaatctagaacttctgattcacca 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 tctcaatttgaagatgttatgactaaaatggttaataaatctagaacttctgattcacca 540


Query: 541 ttattaggtgaaggt 555
|||||||||||||||
Sbjct: 541 ttattaggtgaaggt 555


>Contig-U10201-1 (Contig-U10201-1Q) /CSM_Contig/Contig-U10201-1Q.Seq.d
Length = 1179

Score = 36.2 bits (18), Expect = 0.043
Identities = 27/30 (90%)
Strand = Plus / Plus


Query: 314 tcaatcaagatttagaagcaccaatctttc 343
||||| ||||| |||||||||||||||||
Sbjct: 1004 tcaataaagatccagaagcaccaatctttc 1033


>Contig-U11004-1 (Contig-U11004-1Q) /CSM_Contig/Contig-U11004-1Q.Seq.d
Length = 1906

Score = 34.2 bits (17), Expect = 0.17
Identities = 17/17 (100%)
Strand = Plus / Plus


Query: 97 gttgatttacatccatc 113
|||||||||||||||||
Sbjct: 1584 gttgatttacatccatc 1600


Database: CSM
Posted date: Jun 9, 2004 7:35 PM
Number of letters in database: 5,674,871
Number of sequences in database: 6905

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4507
Number of Sequences: 6905
Number of extensions: 4507
Number of successful extensions: 476
Number of sequences better than 10.0: 49
length of query: 621
length of database: 5,674,871
effective HSP length: 16
effective length of query: 605
effective length of database: 5,564,391
effective search space: 3366456555
effective search space used: 3366456555
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2009. 6.19
Homology vs DNA
Query= Contig-U04401-1 (Contig-U04401-1Q) /CSM_Contig/Contig-U04401-1Q.Seq.d
(621 letters)

Database: ddbj_A
102,105,510 sequences; 101,790,757,118 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(C89652) Dictyostelium discoideum slug cDNA, clone SSA479. 1094 0.0 1
(U25116) Dictyostelium discoideum cytoplasmic dynein interme... 922 0.0 2
(EL563906) Physarum01935 Physarum polycephalum starvation st... 54 0.007 1
(AL354716) Human DNA sequence from clone RP11-86F4 on chromo... 40 0.34 2
(EA162682) Sequence 26997 from patent US 7214786. 48 0.40 1
(BE488935) WHE1077_E03_J05ZS Wheat unstressed seedling shoot... 48 0.40 1
(BE488504) WHE1058_C12_F24ZS Wheat unstressed seedling shoot... 48 0.40 1
(AC121938) Mus musculus BAC clone RP24-208D21 from chromosom... 46 1.6 1
(DH059399) Oryzias latipes Fosmid clone:GOLWFno113_e23, forw... 46 1.6 1
(AU243919) Oryzias latipes cDNA clone:NGY42.07e. 46 1.6 1
(DK044195) Oryzias latipes cDNA, clone: olbr63j03, 3' end. 46 1.6 1
(DK042034) Oryzias latipes cDNA, clone: olbr57f06, 3' end. 46 1.6 1
(DK038018) Oryzias latipes cDNA, clone: olbr45l01, 3' end. 46 1.6 1
(DK030290) Oryzias latipes cDNA, clone: olbr23f23, 3' end. 46 1.6 1
(BJ899217) Oryzias latipes cDNA clone:MF01ASD037n19, 3' end. 46 1.6 1
(BJ885212) Oryzias latipes cDNA clone:MF01ASD037n19, 5' end. 46 1.6 1
(BJ740070) Oryzias latipes cDNA clone:MF015DA002a22, 3' end. 46 1.6 1
(BJ722813) Oryzias latipes cDNA clone:MF01FFA027g06, 3' end. 46 1.6 1
(BJ511921) Oryzias latipes cDNA clone:MF01FSA042D17, 3' end ... 46 1.6 1
(DQ447660) Lake Victoria marburgvirus - Angola2005 strain An... 44 6.3 1
(DQ447659) Lake Victoria marburgvirus - Angola2005 strain An... 44 6.3 1
(DQ447658) Lake Victoria marburgvirus - Angola2005 strain An... 44 6.3 1
(DQ447657) Lake Victoria marburgvirus - Angola2005 strain An... 44 6.3 1
(DQ447656) Lake Victoria marburgvirus - Angola2005 strain An... 44 6.3 1
(DQ447655) Lake Victoria marburgvirus - Angola2005 strain An... 44 6.3 1
(DQ447654) Lake Victoria marburgvirus - Angola2005 strain An... 44 6.3 1
(DQ447653) Lake Victoria marburgvirus - Angola2005 strain An... 44 6.3 1
(AC097293) Rattus norvegicus clone CH230-134E23, *** SEQUENC... 44 6.3 1
(CU914201) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 6.3 1
(CU468616) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 6.3 1
(EJ365559) 1092963704450 Global-Ocean-Sampling_GS-28-01-01-1... 44 6.3 1
(DX507584) 803_6_14286616_5489_44251_062 Limanthese alba met... 44 6.3 1
(DH633869) Rattus norvegicus DNA, BAC clone: RNB1-170P22, 3'... 44 6.3 1
(DH632718) Rattus norvegicus DNA, BAC clone: RNB1-169H06, 3'... 44 6.3 1
(DH592800) Rattus norvegicus DNA, BAC clone: RNB1-115N04, 3'... 44 6.3 1
(CZ643558) OM__Ba0189O16.f OM__Ba Oryza minuta genomic clone... 44 6.3 1
(BP529520) Nicotiana tabacum cDNA, clone: BY14422, primer: M... 44 6.3 1
(CP000447) Shewanella frigidimarina NCIMB 400, complete genome. 44 6.3 1
(CE168853) tigr-gss-dog-17000326591475 Dog Library Canis lup... 40 9.4 2

>(C89652) Dictyostelium discoideum slug cDNA, clone SSA479.
Length = 622

Score = 1094 bits (552), Expect = 0.0
Identities = 555/555 (100%)
Strand = Plus / Plus


Query: 1 ggtactgaagagggtgtcatttgtcaagctggtcgtcatggtaatagaatcgttatgaat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggtactgaagagggtgtcatttgtcaagctggtcgtcatggtaatagaatcgttatgaat 60


Query: 61 gaacgttataaaggacactttggtccaatcacctcggttgatttacatccatcaaagggt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gaacgttataaaggacactttggtccaatcacctcggttgatttacatccatcaaagggt 120


Query: 121 ggtgccgatttctcacaatatttcctcagttcttcaacagattggacttgtaaattatgg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ggtgccgatttctcacaatatttcctcagttcttcaacagattggacttgtaaattatgg 180


Query: 181 tcatccaaaaaagagactccactttactcttttgaagattatgtcgattacgtttatgat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tcatccaaaaaagagactccactttactcttttgaagattatgtcgattacgtttatgat 240


Query: 241 gcacgttggtcaccagttcatccatctattttctcaactggtgatggtagtggtacactt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 gcacgttggtcaccagttcatccatctattttctcaactggtgatggtagtggtacactt 300


Query: 301 tcactctgggatntcaatcaagatttagaagcaccaatctttcgtcataaaatttcaaat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tcactctgggatntcaatcaagatttagaagcaccaatctttcgtcataaaatttcaaat 360


Query: 361 agatctgttaatcgtcttgcttggagtcatgatggtaaacgtatattagttggtgattct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 agatctgttaatcgtcttgcttggagtcatgatggtaaacgtatattagttggtgattct 420


Query: 421 ggtggttcactctctctctttgattcaagtgaattctcttctccaacttctgaagaatat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 ggtggttcactctctctctttgattcaagtgaattctcttctccaacttctgaagaatat 480


Query: 481 tctcaatttgaagatgttatgactaaaatggttaataaatctagaacttctgattcacca 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 tctcaatttgaagatgttatgactaaaatggttaataaatctagaacttctgattcacca 540


Query: 541 ttattaggtgaaggt 555
|||||||||||||||
Sbjct: 541 ttattaggtgaaggt 555

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 102105510
Number of Hits to DB: 635,938,133
Number of extensions: 35306551
Number of successful extensions: 2562203
Number of sequences better than 10.0: 39
Length of query: 621
Length of database: 101,790,757,118
Length adjustment: 23
Effective length of query: 598
Effective length of database: 99,442,330,388
Effective search space: 59466513572024
Effective search space used: 59466513572024
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)

protein update 2009. 7.30
Homology vs Protein
Query= Contig-U04401-1 (Contig-U04401-1Q) /CSM_Contig/Contig-U04401-1Q.Seq.d
(621 letters)

Database: nrp_A
3,268,448 sequences; 1,061,185,681 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

AC068039_1(AC068039|pid:none) Homo sapiens BAC clone RP11-703L16... 149 8e-35
AK301866_1(AK301866|pid:none) Homo sapiens cDNA FLJ55471 complet... 149 8e-35
AB463591_1(AB463591|pid:none) Synthetic construct DNA, clone: pF... 149 8e-35
AK298561_1(AK298561|pid:none) Homo sapiens cDNA FLJ53290 complet... 149 8e-35
AB173455_1(AB173455|pid:none) Macaca fascicularis brain cDNA clo... 149 8e-35
AK316119_1(AK316119|pid:none) Homo sapiens cDNA, FLJ79018 comple... 149 8e-35
AB209014_1(AB209014|pid:none) Homo sapiens mRNA for dynein, cyto... 149 8e-35
AY037160_1(AY037160|pid:none) Homo sapiens cytoplasmic dynein in... 149 8e-35
AK141837_1(AK141837|pid:none) Mus musculus 12 days embryo spinal... 148 1e-34
BX284624_2(BX284624|pid:none) Mouse DNA sequence from clone RP23... 148 1e-34
BX284624_1(BX284624|pid:none) Mouse DNA sequence from clone RP23... 148 1e-34
(Q0III3) RecName: Full=Cytoplasmic dynein 1 intermediate chain 2... 148 1e-34
(O88487) RecName: Full=Cytoplasmic dynein 1 intermediate chain 2... 148 1e-34
BC068704_1(BC068704|pid:none) Xenopus laevis cDNA clone MGC:8113... 147 2e-34
BC124315_1(BC124315|pid:none) Danio rerio dynein, cytoplasmic 1,... 147 2e-34
AF319781_1(AF319781|pid:none) Xenopus laevis clone 2 cytoplasmic... 147 2e-34
BC067997_1(BC067997|pid:none) Xenopus tropicalis dynein, cytopla... 147 2e-34
AF134477_1(AF134477|pid:none) Homo sapiens cytoplasmic dynein in... 147 2e-34
AJ720190_1(AJ720190|pid:none) Gallus gallus mRNA for hypothetica... 146 4e-34
CR857877_1(CR857877|pid:none) Pongo abelii mRNA; cDNA DKFZp459G0... 146 4e-34
BT072022_1(BT072022|pid:none) Salmo salar clone ssal-rgf-507-381... 145 7e-34
BC051992_1(BC051992|pid:none) Mus musculus dynein cytoplasmic 1 ... 145 1e-33
AK158589_1(AK158589|pid:none) Mus musculus visual cortex cDNA, R... 145 1e-33
BC114074_1(BC114074|pid:none) Bos taurus dynein, cytoplasmic 1, ... 145 1e-33
BC053542_1(BC053542|pid:none) Homo sapiens dynein, cytoplasmic 1... 144 2e-33
AF123074_1(AF123074|pid:none) Homo sapiens cytoplasmic dynein in... 144 2e-33
AB463590_1(AB463590|pid:none) Synthetic construct DNA, clone: pF... 144 2e-33
AB169842_1(AB169842|pid:none) Macaca fascicularis brain cDNA, cl... 144 2e-33
AK297427_1(AK297427|pid:none) Homo sapiens cDNA FLJ59721 complet... 144 2e-33
BC037854_1(BC037854|pid:none) Homo sapiens dynein, cytoplasmic 1... 144 2e-33
(Q62871) RecName: Full=Cytoplasmic dynein 1 intermediate chain 2... 143 3e-33
U39045_1(U39045|pid:none) Rattus norvegicus cytoplasmic dynein i... 143 3e-33
BC154681_1(BC154681|pid:none) Xenopus tropicalis dynein, cytopla... 143 3e-33
U39046_1(U39046|pid:none) Rattus norvegicus cytoplasmic dynein i... 143 3e-33
BC128858_1(BC128858|pid:none) Danio rerio zgc:158394, mRNA (cDNA... 142 1e-32
(Q9VR78) RecName: Full=Dynein intermediate chain, cytosolic; ... 139 5e-32
AF070689_1(AF070689|pid:none) Drosophila melanogaster cytoplasmi... 139 5e-32
AF070696_1(AF070696|pid:none) Drosophila melanogaster cytoplasmi... 139 5e-32
AF070690_1(AF070690|pid:none) Drosophila melanogaster cytoplasmi... 139 5e-32
AF070692_1(AF070692|pid:none) Drosophila melanogaster cytoplasmi... 139 5e-32
AF070691_1(AF070691|pid:none) Drosophila melanogaster cytoplasmi... 139 5e-32
AF070687_1(AF070687|pid:none) Drosophila melanogaster cytoplasmi... 139 5e-32
AE014298_3120(AE014298|pid:none) Drosophila melanogaster chromos... 139 5e-32
BC022540_1(BC022540|pid:none) Homo sapiens dynein, cytoplasmic 1... 139 5e-32
AE014298_3115(AE014298|pid:none) Drosophila melanogaster chromos... 139 5e-32
AE014298_3113(AE014298|pid:none) Drosophila melanogaster chromos... 139 5e-32
AE014298_3109(AE014298|pid:none) Drosophila melanogaster chromos... 139 5e-32
AF070699_1(AF070699|pid:none) Drosophila melanogaster cytoplasmi... 139 5e-32
AE014298_3110(AE014298|pid:none) Drosophila melanogaster chromos... 139 5e-32
AE014298_3119(AE014298|pid:none) Drosophila melanogaster chromos... 139 5e-32
AE014298_3112(AE014298|pid:none) Drosophila melanogaster chromos... 139 5e-32
AC002452_1(AC002452|pid:none) Homo sapiens BAC clone GS1-310A5 f... 132 1e-29
FN359280_3(FN359280|pid:none) Schistosoma mansoni genome sequenc... 131 1e-29
AF045642_2(AF045642|pid:none) Caenorhabditis elegans cosmid C17H... 124 2e-27
AE014185_194(AE014185|pid:none) Plasmodium falciparum 3D7 chromo... 121 1e-26
FN357489_17(FN357489|pid:none) Schistosoma mansoni genome sequen... 120 2e-26
AM910988_44(AM910988|pid:none) Plasmodium knowlesi strain H chro... 117 3e-25
BT044472_1(BT044472|pid:none) Drosophila melanogaster LP16352 fu... 114 2e-24
AE014298_3105(AE014298|pid:none) Drosophila melanogaster chromos... 114 2e-24
L41945_1(L41945|pid:none) Drosophila melanogaster cytoplasmic dy... 110 2e-23
CU633438_411(CU633438|pid:none) Podospora anserina genomic DNA c... 100 3e-20
AP007174_62(AP007174|pid:none) Aspergillus oryzae RIB40 genomic ... 94 3e-18
DQ214333_1(DQ214333|pid:none) Taeniopygia guttata clone 0065P001... 80 4e-14
AY743342_1(AY743342|pid:none) Chlamydomonas reinhardtii axonemal... 74 4e-12
BC097759_1(BC097759|pid:none) Xenopus laevis hypothetical protei... 69 1e-10
FN359266_3(FN359266|pid:none) Schistosoma mansoni genome sequenc... 67 3e-10
CT005269_111(CT005269|pid:none) Leishmania major strain Friedlin... 66 9e-10
BC134930_1(BC134930|pid:none) Danio rerio zgc:162235, mRNA (cDNA... 66 9e-10
AM502250_148(AM502250|pid:none) Leishmania infantum chromosome 32. 65 2e-09
AJ295276_1(AJ295276|pid:none) Homo sapiens mRNA for intermediate... 63 8e-09
BC033013_1(BC033013|pid:none) Homo sapiens dynein, axonemal, int... 63 8e-09
(Q16960) RecName: Full=Dynein intermediate chain 3, ciliary; &D... 63 8e-09
(Q9GZS0) RecName: Full=Dynein intermediate chain 2, axonemal; Al... 63 8e-09
BC039582_1(BC039582|pid:none) Homo sapiens dynein, axonemal, int... 63 8e-09
AL137526_1(AL137526|pid:none) Homo sapiens mRNA; cDNA DKFZp434M1... 63 8e-09
CP001328_102(CP001328|pid:none) Micromonas sp. RCC299 chromosome... 62 1e-08
(P27766) RecName: Full=Dynein, 70 kDa intermediate chain, flagel... 62 1e-08
AM055943_159(AM055943|pid:none) Toxoplasma gondii RH, genomic DN... 62 1e-08
AL663079_3(AL663079|pid:none) Mouse DNA sequence from clone RP23... 62 2e-08
(O94518) RecName: Full=Dynein intermediate chain 1; AltName: Ful... 61 3e-08
CP001574_379(CP001574|pid:none) Micromonas sp. RCC299 chromosome... 60 5e-08
AB051577_1(AB051577|pid:none) Cynops pyrrhogaster mRNA for dynei... 60 7e-08
CT005263_27(CT005263|pid:none) Leishmania major strain Friedlin,... 59 1e-07
AB168911_1(AB168911|pid:none) Macaca fascicularis testis cDNA, c... 57 3e-07
(Q4V8G4) RecName: Full=WD repeat-containing protein 78; &BC0974... 57 3e-07
BC075512_1(BC075512|pid:none) Xenopus tropicalis WD repeat domai... 56 1e-06
AM494961_28(AM494961|pid:none) Leishmania braziliensis chromosom... 56 1e-06
BC011874_1(BC011874|pid:none) Homo sapiens WD repeat domain 34, ... 55 1e-06
AM910989_192(AM910989|pid:none) Plasmodium knowlesi strain H chr... 55 1e-06
CR858239_1(CR858239|pid:none) Pongo abelii mRNA; cDNA DKFZp469F1... 55 1e-06
BC001614_1(BC001614|pid:none) Homo sapiens WD repeat domain 34, ... 55 1e-06
DQ288942_1(DQ288942|pid:none) Brassica napus peroxisomal import ... 55 1e-06
(Q96EX3) RecName: Full=WD repeat-containing protein 34; &AL3564... 55 1e-06
BC126379_1(BC126379|pid:none) Homo sapiens WD repeat domain 78, ... 55 2e-06
AM468090_3(AM468090|pid:none) Vitis vinifera contig VV78X235418.... 55 2e-06
AL133617_1(AL133617|pid:none) Homo sapiens mRNA; cDNA DKFZp434M0... 55 2e-06
AE014296_17(AE014296|pid:none) Drosophila melanogaster chromosom... 55 2e-06
BT001517_1(BT001517|pid:none) Drosophila melanogaster LP11180 fu... 55 2e-06
BC095632_1(BC095632|pid:none) Danio rerio WD repeat domain 78, m... 54 3e-06
DQ405265_1(DQ405265|pid:none) Brassica rapa clone 299 pectineste... 54 3e-06
AF430070_1(AF430070|pid:none) Gossypium hirsutum peroxisomal tar... 54 4e-06
AP007175_262(AP007175|pid:none) Aspergillus oryzae RIB40 genomic... 54 4e-06
AY186749_1(AY186749|pid:none) Lycopersicon esculentum peroxisoma... 54 4e-06
(Q5U4F6) RecName: Full=WD repeat-containing protein 34; 54 5e-06
AL928926_24(AL928926|pid:none) Mouse DNA sequence from clone RP2... 54 5e-06
BC085113_1(BC085113|pid:none) Mus musculus WD repeat domain 34, ... 54 5e-06
AF159260_1(AF159260|pid:none) Chlamydomonas reinhardtii inner dy... 53 6e-06
GN121086_1(GN121086|pid:none) Sequence 3982 from Patent WO200903... 53 8e-06
CP000590_338(CP000590|pid:none) Ostreococcus lucimarinus CCE9901... 52 1e-05
BC171217_1(BC171217|pid:none) Xenopus tropicalis peroxisomal bio... 52 1e-05
AK111709_1(AK111709|pid:none) Oryza sativa Japonica Group cDNA c... 52 1e-05
CP000591_80(CP000591|pid:none) Ostreococcus lucimarinus CCE9901 ... 52 1e-05
BC031606_1(BC031606|pid:none) Homo sapiens peroxisomal biogenesi... 52 1e-05
AC159454_7(AC159454|pid:none) Trypanosoma brucei chromosome 7 cl... 52 1e-05
AL844508_219(AL844508|pid:none) Plasmodium falciparum 3D7 chromo... 52 2e-05
(P97865) RecName: Full=Peroxisomal targeting signal 2 receptor; ... 51 2e-05
(Q8R537) RecName: Full=Peroxisomal targeting signal 2 receptor; ... 51 2e-05
CR954210_347(CR954210|pid:none) Ostreococcus tauri strain OTTH05... 51 3e-05
GN121084_1(GN121084|pid:none) Sequence 3980 from Patent WO200903... 51 3e-05
CP000079_167(CP000079|pid:none) Leishmania major strain Friedlin... 50 4e-05
EU964493_1(EU964493|pid:none) Zea mays clone 279274 unknown mRNA. 50 4e-05
BC123679_1(BC123679|pid:none) Bos taurus peroxisomal biogenesis ... 50 4e-05
EU824434_1(EU824434|pid:none) Populus tremula isolate swl138-3 p... 50 4e-05
AM502247_10(AM502247|pid:none) Leishmania infantum chromosome 29. 50 4e-05
AP007159_576(AP007159|pid:none) Aspergillus oryzae RIB40 genomic... 50 5e-05
CP000080_10(CP000080|pid:none) Leishmania major strain Friedlin ... 50 5e-05
AM502245_115(AM502245|pid:none) Leishmania infantum chromosome 27. 50 7e-05
AM494966_11(AM494966|pid:none) Leishmania braziliensis chromosom... 50 7e-05
GN121088_1(GN121088|pid:none) Sequence 3984 from Patent WO200903... 50 7e-05
AE014296_1589(AE014296|pid:none) Drosophila melanogaster chromos... 49 9e-05
AM502232_121(AM502232|pid:none) Leishmania infantum chromosome 14. 49 9e-05
AE016818_101(AE016818|pid:none) Ashbya gossypii (= Eremothecium ... 49 1e-04
EF083226_1(EF083226|pid:none) Picea sitchensis clone WS0277_O14 ... 49 1e-04
AY463620_1(AY463620|pid:none) Arabidopsis thaliana TAF5 (At5g251... 49 1e-04
(Q32KS2) RecName: Full=Dynein intermediate chain 1, axonemal; Al... 49 1e-04
CU928178_471(CU928178|pid:none) Zygosaccharomyces rouxii strain ... 49 2e-04
AM746676_2689(AM746676|pid:none) Sorangium cellulosum 'So ce 56'... 49 2e-04
CP000502_174(CP000502|pid:none) Pichia stipitis CBS 6054 chromos... 49 2e-04
AC013353_36(AC013353|pid:none) Trypanosoma brucei chromosome 6 c... 48 2e-04
BC090898_1(BC090898|pid:none) Danio rerio peroxisomal biogenesis... 48 2e-04
AP007151_1154(AP007151|pid:none) Aspergillus oryzae RIB40 genomi... 48 3e-04
(Q91WQ5) RecName: Full=TAF5-like RNA polymerase II p300/CBP-asso... 48 3e-04
AP008213_479(AP008213|pid:none) Oryza sativa (japonica cultivar-... 48 3e-04
BT086255_1(BT086255|pid:none) Zea mays full-length cDNA clone ZM... 48 3e-04
AK290696_1(AK290696|pid:none) Homo sapiens cDNA FLJ77982 complet... 48 3e-04
AF053883_1(AF053883|pid:none) Emericella nidulans coatomer alpha... 48 3e-04
FN357383_7(FN357383|pid:none) Schistosoma mansoni genome sequenc... 48 3e-04
AP004273_30(AP004273|pid:none) Oryza sativa Japonica Group genom... 48 3e-04
AP003517_26(AP003517|pid:none) Oryza sativa Japonica Group genom... 48 3e-04
AK290962_1(AK290962|pid:none) Homo sapiens cDNA FLJ76168 complet... 47 3e-04
Z74192_1(Z74192|pid:none) S.cerevisiae chromosome IV reading fra... 47 3e-04
AF190496_1(AF190496|pid:none) Homo sapiens dynein intermediate c... 47 3e-04
AK302186_1(AK302186|pid:none) Homo sapiens cDNA FLJ58552 complet... 47 3e-04
AE016817_477(AE016817|pid:none) Ashbya gossypii (= Eremothecium ... 47 3e-04
BC030583_1(BC030583|pid:none) Homo sapiens dynein, axonemal, int... 47 3e-04
FJ195366_9(FJ195366|pid:none) Bos taurus Y-linked ubiquitin-spec... 47 3e-04
BC032708_1(BC032708|pid:none) Homo sapiens transducin (beta)-lik... 47 3e-04
(P53622) RecName: Full=Coatomer subunit alpha; AltName: Full=Alp... 47 3e-04
CR382138_1113(CR382138|pid:none) Debaryomyces hansenii strain CB... 47 4e-04
CP001328_105(CP001328|pid:none) Micromonas sp. RCC299 chromosome... 47 4e-04
AF339501_1(AF339501|pid:none) Pichia angusta alpha-COP-like prot... 47 4e-04
CP001323_695(CP001323|pid:none) Micromonas sp. RCC299 chromosome... 47 6e-04
CP001323_694(CP001323|pid:none) Micromonas sp. RCC299 chromosome... 47 6e-04
CP000117_2178(CP000117|pid:none) Anabaena variabilis ATCC 29413,... 47 6e-04
(O75529) RecName: Full=TAF5-like RNA polymerase II p300/CBP-asso... 47 6e-04
AM494964_176(AM494964|pid:none) Leishmania braziliensis chromoso... 47 6e-04
AJ009770_1(AJ009770|pid:none) Homo sapiens mRNA for putative tra... 47 6e-04
CP001577_363(CP001577|pid:none) Micromonas sp. RCC299 chromosome... 47 6e-04
BC160901_1(BC160901|pid:none) Rattus norvegicus TAF5-like RNA po... 47 6e-04
AD1842(AD1842) WD-40 repeat protein [imported] - Nostoc sp. (str... 46 8e-04
AY815439_1(AY815439|pid:none) Schistosoma japonicum SJCHGC09312 ... 46 8e-04
CT005253_117(CT005253|pid:none) Leishmania major strain Friedlin... 46 8e-04
(Q9BQ87) RecName: Full=F-box-like/WD repeat-containing protein T... 46 8e-04
FJ527023_1(FJ527023|pid:none) Macaca mulatta transducin (beta)-l... 46 8e-04
FJ532265_1(FJ532265|pid:none) Gorilla gorilla isolate PR00573 tr... 46 8e-04
(Q5KDT9) RecName: Full=Histone acetyltransferase type B subunit ... 46 8e-04
(Q55563) RecName: Full=Uncharacterized WD repeat-containing prot... 46 8e-04
(Q54WA3) RecName: Full=Peroxisomal targeting signal 2 receptor; ... 46 8e-04
FN357546_17(FN357546|pid:none) Schistosoma mansoni genome sequen... 46 8e-04
AL160270_11(AL160270|pid:none) Human DNA sequence from clone RP1... 46 0.001
BC045888_1(BC045888|pid:none) Danio rerio WD repeat domain 51A, ... 46 0.001
BC161057_1(BC161057|pid:none) Xenopus tropicalis hypothetical pr... 46 0.001
CP001291_1144(CP001291|pid:none) Cyanothece sp. PCC 7424, comple... 46 0.001
CR382128_39(CR382128|pid:none) Yarrowia lipolytica strain CLIB12... 46 0.001
AP009552_3821(AP009552|pid:none) Microcystis aeruginosa NIES-843... 46 0.001
AK031937_1(AK031937|pid:none) Mus musculus adult male medulla ob... 45 0.001
FN357855_4(FN357855|pid:none) Schistosoma mansoni genome sequenc... 45 0.001
CP000828_3726(CP000828|pid:none) Acaryochloris marina MBIC11017,... 45 0.001
BT045379_1(BT045379|pid:none) Salmo salar clone ssal-rgf-519-314... 45 0.001
AE017341_485(AE017341|pid:none) Cryptococcus neoformans var. neo... 45 0.001
AE014298_1183(AE014298|pid:none) Drosophila melanogaster chromos... 45 0.001
AK298210_1(AK298210|pid:none) Homo sapiens cDNA FLJ60756 complet... 45 0.001
BC073463_1(BC073463|pid:none) Xenopus laevis MGC80975 protein, m... 45 0.001
BC158249_1(BC158249|pid:none) Xenopus tropicalis hypothetical pr... 45 0.001
AK030547_1(AK030547|pid:none) Mus musculus adult male pituitary ... 45 0.002
BC167084_1(BC167084|pid:none) Rattus norvegicus transducin (beta... 45 0.002
(Q9QXE7) RecName: Full=F-box-like/WD repeat-containing protein T... 45 0.002
CU928168_461(CU928168|pid:none) Kluyveromyces thermotolerans str... 45 0.002
AE017351_116(AE017351|pid:none) Cryptococcus neoformans var. neo... 45 0.002
CR382136_675(CR382136|pid:none) Debaryomyces hansenii strain CBS... 45 0.002
AM270222_20(AM270222|pid:none) Aspergillus niger contig An11c005... 45 0.002
AY398371_1(AY398371|pid:none) Danio rerio clone RK125A3D11 unkno... 45 0.002
CR382138_1216(CR382138|pid:none) Debaryomyces hansenii chromosom... 45 0.002
AY485643_1(AY485643|pid:none) Hordeum vulgare subsp. vulgare BAC... 45 0.002
(A2RRU3) RecName: Full=U3 small nucleolar RNA-associated protein... 45 0.002
(Q16959) RecName: Full=Dynein intermediate chain 2, ciliary; &D... 45 0.002
(Q96WV5) RecName: Full=Putative coatomer subunit alpha; AltName:... 45 0.002
(Q95RJ9) RecName: Full=F-box-like/WD repeat-containing protein e... 45 0.002
(Q7ZW33) RecName: Full=U3 small nucleolar RNA-associated protein... 45 0.002
AH2195(AH2195) hypothetical protein alr3119 [imported] - Nostoc ... 45 0.002
(Q5XIL8) RecName: Full=Dynein intermediate chain 1, axonemal; Al... 45 0.002
AE017347_48(AE017347|pid:none) Cryptococcus neoformans var. neof... 45 0.002
CR812943_6(CR812943|pid:none) Zebrafish DNA sequence from clone ... 44 0.003
CU633438_89(CU633438|pid:none) Podospora anserina genomic DNA ch... 44 0.003
AL929389_1(AL929389|pid:none) Zebrafish DNA sequence from clone ... 44 0.003
AF323585_1(AF323585|pid:none) Podospora anserina beta transducin... 44 0.003
BT022764_1(BT022764|pid:none) Drosophila melanogaster IP13843 fu... 44 0.003
CP000807_36(CP000807|pid:none) Cyanothece sp. ATCC 51142 linear ... 44 0.003
CU928180_152(CU928180|pid:none) Kluyveromyces thermotolerans str... 44 0.004
AM910995_242(AM910995|pid:none) Plasmodium knowlesi strain H chr... 44 0.004
CP001013_1798(CP001013|pid:none) Leptothrix cholodnii SP-6, comp... 44 0.004
(P49695) RecName: Full=Probable serine/threonine-protein kinase ... 44 0.004
(Q8C7V3) RecName: Full=U3 small nucleolar RNA-associated protein... 44 0.004
CP000099_2768(CP000099|pid:none) Methanosarcina barkeri str. Fus... 44 0.004
CU633900_979(CU633900|pid:none) Podospora anserina genomic DNA c... 44 0.004
BC152526_1(BC152526|pid:none) Danio rerio zgc:171284, mRNA (cDNA... 44 0.004
FM992693_201(FM992693|pid:none) Candida dubliniensis CD36 chromo... 44 0.004
(O74319) RecName: Full=Transcription initiation factor TFIID sub... 44 0.005
CP001325_706(CP001325|pid:none) Micromonas sp. RCC299 chromosome... 44 0.005
(P38129) RecName: Full=Transcription initiation factor TFIID sub... 44 0.005
AC133571_4(AC133571|pid:none) Medicago truncatula clone mth2-10h... 44 0.005
FN392322_77(FN392322|pid:none) Pichia pastoris GS115 chromosome ... 44 0.005
AK154163_1(AK154163|pid:none) Mus musculus NOD-derived CD11c +ve... 44 0.005
CP001291_699(CP001291|pid:none) Cyanothece sp. PCC 7424, complet... 44 0.005
CP000117_2100(CP000117|pid:none) Anabaena variabilis ATCC 29413,... 44 0.005
(Q4P553) RecName: Full=Histone acetyltransferase type B subunit ... 44 0.005
AE014188_122(AE014188|pid:none) Plasmodium falciparum 3D7 chromo... 44 0.005
BC077257_1(BC077257|pid:none) Xenopus laevis retinoblastoma A as... 43 0.006
(Q9W7I5) RecName: Full=Histone-binding protein RBBP4; AltName: F... 43 0.006
CU928173_540(CU928173|pid:none) Zygosaccharomyces rouxii strain ... 43 0.006
AB171144_1(AB171144|pid:none) Macaca fascicularis brain cDNA clo... 43 0.006
CU928169_531(CU928169|pid:none) Kluyveromyces thermotolerans str... 43 0.006
AK299251_1(AK299251|pid:none) Homo sapiens cDNA FLJ53908 complet... 43 0.006
AK222779_1(AK222779|pid:none) Homo sapiens mRNA for retinoblasto... 43 0.006
(Q0P593) RecName: Full=WD repeat-containing protein 69; &BC1203... 43 0.006
(O93377) RecName: Full=Histone-binding protein RBBP4-A; AltName:... 43 0.006
AY100481_1(AY100481|pid:none) Zea mays nucleosome/chromatin asse... 43 0.006
CU928165_278(CU928165|pid:none) Kluyveromyces thermotolerans str... 43 0.006
(Q09028) RecName: Full=Histone-binding protein RBBP4; AltName: F... 43 0.006
BC067546_1(BC067546|pid:none) Danio rerio retinoblastoma binding... 43 0.006
(Q5M7K4) RecName: Full=Histone-binding protein RBBP4; AltName: F... 43 0.006
AK299410_1(AK299410|pid:none) Homo sapiens cDNA FLJ50184 complet... 43 0.006
(Q6INH0) RecName: Full=Histone-binding protein RBBP4-B; AltName:... 43 0.006
BC015123_1(BC015123|pid:none) Homo sapiens, Similar to retinobla... 43 0.006
X71810_1(X71810|pid:none) H.sapiens IEF 9306 mRNA. 43 0.006
CR760337_1(CR760337|pid:none) Xenopus tropicalis finished cDNA, ... 43 0.006
AF250047_1(AF250047|pid:none) Zea mays WD-repeat protein RBAP1 (... 43 0.006
(Q5RF92) RecName: Full=Histone-binding protein RBBP4; AltName: F... 43 0.006
AF384037_1(AF384037|pid:none) Zea mays nucleosome/chromatin asse... 43 0.006
I49366(I49366) G1/S transition control protein-binding protein R... 43 0.006
AM270360_50(AM270360|pid:none) Aspergillus niger contig An16c008... 43 0.006
(Q54R82) RecName: Full=Mitogen-activated protein kinase kinase k... 43 0.006
CP001037_139(CP001037|pid:none) Nostoc punctiforme PCC 73102, co... 43 0.006
CR857269_1(CR857269|pid:none) Pongo abelii mRNA; cDNA DKFZp469A0... 43 0.006
JC7558(JC7558)chromatin assembly factor-1 p48 subunit homolog, p... 43 0.008
AM392737_1(AM392737|pid:none) Synthetic construct Homo sapiens c... 43 0.008
AM393545_1(AM393545|pid:none) Synthetic construct Homo sapiens c... 43 0.008
(Q8AVH1) RecName: Full=Histone-binding protein RBBP7; AltName: F... 43 0.008
(Q9I8G9) RecName: Full=Histone-binding protein RBBP7; AltName: F... 43 0.008
AM920436_1983(AM920436|pid:none) Penicillium chrysogenum Wiscons... 43 0.008
AF028711_1(AF028711|pid:none) Arabidopsis thaliana WD-40 repeat ... 43 0.008
(O22607) RecName: Full=WD-40 repeat-containing protein MSI4; Alt... 43 0.008
AP009552_5491(AP009552|pid:none) Microcystis aeruginosa NIES-843... 43 0.008
(Q2TBP4) RecName: Full=WD repeat-containing protein 51A; &BC109... 43 0.008
AK302021_1(AK302021|pid:none) Homo sapiens cDNA FLJ57656 complet... 43 0.008
AK011064_1(AK011064|pid:none) Mus musculus 13 days embryo liver ... 43 0.008
CR940347_796(CR940347|pid:none) Theileria annulata strain Ankara... 43 0.008
(Q58D20) RecName: Full=Notchless protein homolog 1; 42 0.011
(Q7SZM9) RecName: Full=F-box-like/WD repeat-containing protein T... 42 0.011
(Q5REE0) RecName: Full=U3 small nucleolar RNA-associated protein... 42 0.011
AL606668_23(AL606668|pid:none) Oryza sativa genomic DNA, chromos... 42 0.011
AM910996_292(AM910996|pid:none) Plasmodium knowlesi strain H chr... 42 0.011
BC045315_1(BC045315|pid:none) Danio rerio retinoblastoma binding... 42 0.011
BC160737_1(BC160737|pid:none) Xenopus laevis nuclear receptor co... 42 0.011
AJ012588_1(AJ012588|pid:none) Drosophila melanogaster mRNA for N... 42 0.011
AE014134_131(AE014134|pid:none) Drosophila melanogaster chromoso... 42 0.011
CP000883_67(CP000883|pid:none) Hemiselmis andersenii chromosome ... 42 0.011
AB007645_4(AB007645|pid:none) Arabidopsis thaliana genomic DNA, ... 42 0.011
(Q94A40) RecName: Full=Coatomer subunit alpha-1; AltName: Full=A... 42 0.011
AY428810_1(AY428810|pid:none) Solanum chacoense notchless-like p... 42 0.011
CP000584_157(CP000584|pid:none) Ostreococcus lucimarinus CCE9901... 42 0.011
BC123966_1(BC123966|pid:none) Xenopus tropicalis transducin (bet... 42 0.011
BT021777_1(BT021777|pid:none) Bos taurus Notchless gene homolog ... 42 0.011
(Q0J3D9) RecName: Full=Coatomer subunit alpha-3; AltName: Full=A... 42 0.011
AP007151_696(AP007151|pid:none) Aspergillus oryzae RIB40 genomic... 42 0.011
CP000117_4826(CP000117|pid:none) Anabaena variabilis ATCC 29413,... 42 0.014
AE013599_3286(AE013599|pid:none) Drosophila melanogaster chromos... 42 0.014
FN313599_1(FN313599|pid:none) Schistosoma japonicum isolate Anhu... 42 0.014
(Q5RD06) RecName: Full=WD repeat-containing protein 51B; &CR858... 42 0.014
BT045583_1(BT045583|pid:none) Salmo salar clone ssal-rgf-525-298... 42 0.014
AP008207_3678(AP008207|pid:none) Oryza sativa (japonica cultivar... 42 0.014
AC155896_13(AC155896|pid:none) Medicago truncatula chromosome 2 ... 42 0.014
BC063984_1(BC063984|pid:none) Danio rerio retinoblastoma binding... 42 0.014
AE014297_3432(AE014297|pid:none) Drosophila melanogaster chromos... 42 0.014
AP007151_1242(AP007151|pid:none) Aspergillus oryzae RIB40 genomi... 42 0.014
(Q7K0L4) RecName: Full=WD repeat-containing protein 26 homolog; ... 42 0.014
AK074217_1(AK074217|pid:none) Homo sapiens cDNA FLJ23637 fis, cl... 42 0.014
BC084871_1(BC084871|pid:none) Xenopus laevis hypothetical LOC495... 42 0.014
(Q6P3H7) RecName: Full=Histone-binding protein RBBP4; AltName: F... 42 0.014
(Q8TED0) RecName: Full=U3 small nucleolar RNA-associated protein... 42 0.014
AP004312_39(AP004312|pid:none) Synechocystis sp. PCC 6803 plasmi... 42 0.014
AY394940_1(AY394940|pid:none) Danio rerio clone RK046A1D12 retin... 42 0.014
FN357519_15(FN357519|pid:none) Schistosoma mansoni genome sequen... 42 0.014
BC168104_1(BC168104|pid:none) Xenopus tropicalis cDNA clone MGC:... 42 0.014
DQ132809_1(DQ132809|pid:none) Oryza sativa (japonica cultivar-gr... 42 0.014
AC149637_4(AC149637|pid:none) Medicago truncatula clone mth2-181... 42 0.019
CR954215_132(CR954215|pid:none) Ostreococcus tauri strain OTTH05... 42 0.019
AK098821_1(AK098821|pid:none) Homo sapiens cDNA FLJ25955 fis, cl... 42 0.019
(Q9SJT9) RecName: Full=Coatomer subunit alpha-2; AltName: Full=A... 42 0.019
CP000806_3916(CP000806|pid:none) Cyanothece sp. ATCC 51142 circu... 42 0.019
BC143724_1(BC143724|pid:none) Homo sapiens gem (nuclear organell... 42 0.019
AK022748_1(AK022748|pid:none) Homo sapiens cDNA FLJ12686 fis, cl... 42 0.019
AJ580822_1(AJ580822|pid:none) Lotus corniculatus var. japonicus ... 42 0.019
AC007864_26(AC007864|pid:none) Trypanosoma brucei chromosome 2 c... 42 0.019
AY809863_1(AY809863|pid:none) Schistosoma japonicum SJCHGC09173 ... 42 0.019
CP001037_1947(CP001037|pid:none) Nostoc punctiforme PCC 73102, c... 42 0.019
AK301861_1(AK301861|pid:none) Homo sapiens cDNA FLJ54195 complet... 42 0.019
AL117665_1(AL117665|pid:none) Homo sapiens mRNA; cDNA DKFZp586M1... 42 0.019
A84578(A84578) probable WD-40 repeat protein [imported] - Arabid... 42 0.019
AC146745_23(AC146745|pid:none) Medicago truncatula clone mth2-53... 42 0.019
FN318861_1(FN318861|pid:none) Schistosoma japonicum isolate Anhu... 42 0.019
AL844505_66(AL844505|pid:none) Plasmodium falciparum 3D7 chromos... 42 0.019
(Q54YD8) RecName: Full=Coatomer subunit beta'; AltName: Full=Bet... 42 0.019
AM778958_177(AM778958|pid:none) Microcystis aeruginosa PCC 7806 ... 42 0.019
(Q8VEJ4) RecName: Full=Notchless protein homolog 1; &BC018399_1... 42 0.019
AB385260_1(AB385260|pid:none) Synthetic construct DNA, clone: pF... 42 0.019
(Q8C092) RecName: Full=Transcription initiation factor TFIID sub... 42 0.019
CR382131_810(CR382131|pid:none) Yarrowia lipolytica strain CLIB1... 42 0.019
AF374376_34(AF374376|pid:none) Oikopleura dioica clone BAC clone... 42 0.019
BC008776_1(BC008776|pid:none) Homo sapiens gem (nuclear organell... 42 0.019
(Q9WUC8) RecName: Full=Pleiotropic regulator 1; &AF128241_1(AF1... 41 0.024
(Q9BZK7) RecName: Full=F-box-like/WD repeat-containing protein T... 41 0.024
BC044710_1(BC044710|pid:none) Xenopus laevis Notchless gene homo... 41 0.024
AF268195_1(AF268195|pid:none) Mus musculus strain BALB/c IRA1 mR... 41 0.024
AE013599_91(AE013599|pid:none) Drosophila melanogaster chromosom... 41 0.024
CU074316_1(CU074316|pid:none) Podospora anserina genomic DNA, NW... 41 0.024
AL672182_2(AL672182|pid:none) Mouse DNA sequence from clone RP23... 41 0.024
AK131137_1(AK131137|pid:none) Mus musculus mRNA for mFLJ00137 pr... 41 0.024
AK088953_1(AK088953|pid:none) Mus musculus 2 days neonate thymus... 41 0.024
AK170853_1(AK170853|pid:none) Mus musculus NOD-derived CD11c +ve... 41 0.024
AL603745_5(AL603745|pid:none) Mouse DNA sequence from clone RP23... 41 0.024
(Q8BHJ5) RecName: Full=F-box-like/WD repeat-containing protein T... 41 0.024
AK022956_1(AK022956|pid:none) Homo sapiens cDNA FLJ12894 fis, cl... 41 0.024
(Q24572) RecName: Full=Probable histone-binding protein Caf1; Al... 41 0.024
U75309_1(U75309|pid:none) Human TBP-associated factor (hTAFII100... 41 0.024
AY811632_1(AY811632|pid:none) Schistosoma japonicum clone SJCHGC... 41 0.024
(O43660) RecName: Full=Pleiotropic regulator 1; &AF044333_1(AF0... 41 0.024
BC052268_1(BC052268|pid:none) Homo sapiens TAF5 RNA polymerase I... 41 0.024
CP000686_3296(CP000686|pid:none) Roseiflexus sp. RS-1, complete ... 41 0.024
(Q15542) RecName: Full=Transcription initiation factor TFIID sub... 41 0.024
AL935189_4(AL935189|pid:none) Zebrafish DNA sequence from clone ... 41 0.024
(Q922V4) RecName: Full=Pleiotropic regulator 1; &AK075993_1(AK0... 41 0.024
CU640366_848(CU640366|pid:none) Podospora anserina genomic DNA c... 41 0.024
BC020786_1(BC020786|pid:none) Homo sapiens pleiotropic regulator... 41 0.024
BC156180_1(BC156180|pid:none) Synthetic construct Mus musculus c... 41 0.024
BC144922_1(BC144922|pid:none) Mus musculus gem (nuclear organell... 41 0.024
(Q2KID6) RecName: Full=Pleiotropic regulator 1; &BC112677_1(BC1... 41 0.024
(Q8BX17) RecName: Full=Gem-associated protein 5; Short=... 41 0.024
BC137802_1(BC137802|pid:none) Mus musculus gem (nuclear organell... 41 0.024
BC161681_1(BC161681|pid:none) Xenopus laevis TBP-associated fact... 41 0.024
AF044334_1(AF044334|pid:none) Mus musculus pleiotropic regulator... 41 0.024
(Q7ZUV2) RecName: Full=Katanin p80 WD40-containing subunit B1; ... 41 0.032
CP000501_12(CP000501|pid:none) Pichia stipitis CBS 6054 chromoso... 41 0.032
AE016818_604(AE016818|pid:none) Ashbya gossypii (= Eremothecium ... 41 0.032
CR760326_1(CR760326|pid:none) Xenopus tropicalis finished cDNA, ... 41 0.032
AL832918_1(AL832918|pid:none) Homo sapiens mRNA; cDNA DKFZp762M0... 41 0.032
CR405685_1(CR405685|pid:none) Zebrafish DNA sequence from clone ... 41 0.032
AP007175_253(AP007175|pid:none) Aspergillus oryzae RIB40 genomic... 41 0.032
BT036001_1(BT036001|pid:none) Zea mays full-length cDNA clone ZM... 41 0.032
(Q26544) RecName: Full=WD repeat-containing protein SL1-17; &U3... 41 0.032
(Q9NVX2) RecName: Full=Notchless protein homolog 1; &AK001320_1... 41 0.032
AK001162_1(AK001162|pid:none) Homo sapiens cDNA FLJ10300 fis, cl... 41 0.032
FM992695_823(FM992695|pid:none) Candida dubliniensis CD36 chromo... 41 0.032
FN357417_32(FN357417|pid:none) Schistosoma mansoni genome sequen... 41 0.032
AM472385_2(AM472385|pid:none) Vitis vinifera contig VV78X080386.... 41 0.032
AY814886_1(AY814886|pid:none) Schistosoma japonicum SJCHGC06281 ... 41 0.032
AX135809_1(AX135809|pid:none) Sequence 3 from Patent WO0132614. 41 0.032
BA000045_725(BA000045|pid:none) Gloeobacter violaceus PCC 7421 D... 41 0.032
BC056099_1(BC056099|pid:none) Xenopus laevis hypothetical protei... 41 0.032
AM910993_425(AM910993|pid:none) Plasmodium knowlesi strain H chr... 41 0.032
AE014296_3092(AE014296|pid:none) Drosophila melanogaster chromos... 41 0.032
(Q9FLX9) RecName: Full=Notchless protein homolog; &AB009055_3(A... 41 0.032
AM269966_5(AM269966|pid:none) Aspergillus niger contig An01c0190... 41 0.032
(Q8WVS4) RecName: Full=WD repeat-containing protein 60; &BC0144... 41 0.032
CP000828_167(CP000828|pid:none) Acaryochloris marina MBIC11017, ... 41 0.032
BC002884_1(BC002884|pid:none) Homo sapiens notchless homolog 1 (... 41 0.032
AY223226_1(AY223226|pid:none) Schistosoma japonicum clone ZZD323... 41 0.032
AK303253_1(AK303253|pid:none) Homo sapiens cDNA FLJ58655 complet... 41 0.032
AK304508_1(AK304508|pid:none) Homo sapiens cDNA FLJ57449 complet... 41 0.032
CR380959_230(CR380959|pid:none) Candida glabrata strain CBS138 c... 41 0.032
(Q20168) RecName: Full=Probable coatomer subunit beta'; AltName:... 41 0.032
AM494971_386(AM494971|pid:none) Leishmania braziliensis chromoso... 41 0.032
AB179186_1(AB179186|pid:none) Macaca fascicularis testis cDNA cl... 41 0.032
AX135807_1(AX135807|pid:none) Sequence 1 from Patent WO0132614. 41 0.032
(P25382) RecName: Full=WD repeat-containing protein YCR072C; &A... 41 0.032
AY654583_1(AY654583|pid:none) Lolium perenne FY protein (FY) mRN... 41 0.032
BC045034_1(BC045034|pid:none) Xenopus laevis U5 snRNP-specific 4... 41 0.032
CR382131_54(CR382131|pid:none) Yarrowia lipolytica strain CLIB12... 40 0.041
S19487(S19487;S26657)hypothetical protein YCR072c - yeast (Sacch... 40 0.041
BT045703_1(BT045703|pid:none) Salmo salar clone ssal-rgf-529-053... 40 0.041
(Q8N136) RecName: Full=WD repeat-containing protein 69; &AC0730... 40 0.041
AB180752_1(AB180752|pid:none) Cyprinus carpio Gbeta5L mRNA for G... 40 0.041
FM992688_693(FM992688|pid:none) Candida dubliniensis CD36 chromo... 40 0.041
(Q9AUR7) RecName: Full=Coatomer subunit alpha-2; AltName: Full=A... 40 0.041
AK315688_1(AK315688|pid:none) Homo sapiens cDNA, FLJ96786. 40 0.041
BC110877_1(BC110877|pid:none) Homo sapiens WD repeat domain 51A,... 40 0.041
AK075289_1(AK075289|pid:none) Homo sapiens cDNA FLJ90808 fis, cl... 40 0.041
AY064059_1(AY064059|pid:none) Arabidopsis thaliana unknown prote... 40 0.041
BC150355_1(BC150355|pid:none) Danio rerio coatomer protein compl... 40 0.041
BC119693_1(BC119693|pid:none) Homo sapiens WD repeat domain 51A,... 40 0.041
AY648754_1(AY648754|pid:none) Danio rerio cotamer alpha mRNA, co... 40 0.041
AK317605_1(AK317605|pid:none) Arabidopsis thaliana AT1G64610 mRN... 40 0.041
AC004684_17(AC004684|pid:none) Arabidopsis thaliana chromosome 2... 40 0.041
(Q6P5M2) RecName: Full=WD repeat-containing protein 61; &BC0628... 40 0.054
BC084093_1(BC084093|pid:none) Xenopus laevis hypothetical LOC495... 40 0.054
CP000806_1073(CP000806|pid:none) Cyanothece sp. ATCC 51142 circu... 40 0.054
CP001037_1323(CP001037|pid:none) Nostoc punctiforme PCC 73102, c... 40 0.054
ERHUAH(JC4668;A44317) coatomer complex alpha chain homolog - hum... 40 0.054
AE014188_191(AE014188|pid:none) Plasmodium falciparum 3D7 chromo... 40 0.054
AK036064_1(AK036064|pid:none) Mus musculus 16 days neonate cereb... 40 0.054
(P53621) RecName: Full=Coatomer subunit alpha; AltName: Full=Alp... 40 0.054
AF492460_1(AF492460|pid:none) Homo sapiens WD repeat 17 (WDR17) ... 40 0.054
FM992691_442(FM992691|pid:none) Candida dubliniensis CD36 chromo... 40 0.054
AP007151_775(AP007151|pid:none) Aspergillus oryzae RIB40 genomic... 40 0.054
CU928169_422(CU928169|pid:none) Kluyveromyces thermotolerans str... 40 0.054
AC159435_6(AC159435|pid:none) Trypanosoma brucei chromosome 8 cl... 40 0.054
AK043479_1(AK043479|pid:none) Mus musculus 7 days neonate cerebe... 40 0.054
BC169090_1(BC169090|pid:none) Rattus norvegicus coatomer protein... 40 0.054
CR954205_343(CR954205|pid:none) Ostreococcus tauri strain OTTH05... 40 0.054
(Q8CIE6) RecName: Full=Coatomer subunit alpha; AltName: Full=Alp... 40 0.054
AE017341_745(AE017341|pid:none) Cryptococcus neoformans var. neo... 40 0.054
AL445230_1(AL445230|pid:none) Human DNA sequence from clone RP11... 40 0.054
AB179215_1(AB179215|pid:none) Macaca fascicularis testis cDNA cl... 40 0.054
BC095217_1(BC095217|pid:none) Danio rerio zgc:110281, mRNA (cDNA... 40 0.054
AB385218_1(AB385218|pid:none) Synthetic construct DNA, clone: pF... 40 0.054
(Q8BHD1) RecName: Full=WD repeat-containing protein 51B; &AK045... 40 0.054
AC1842(AC1842) WD-40 repeat protein [imported] - Nostoc sp. (str... 40 0.054
(O13286) RecName: Full=WD repeat-containing protein srw1; AltNam... 40 0.054
(Q27954) RecName: Full=Coatomer subunit alpha; AltName: Full=Alp... 40 0.054
AB017067_11(AB017067|pid:none) Arabidopsis thaliana genomic DNA,... 40 0.054
CP000828_20(CP000828|pid:none) Acaryochloris marina MBIC11017, c... 40 0.054
AJ851796_1(AJ851796|pid:none) Gallus gallus mRNA for hypothetica... 40 0.054
(Q7ZXZ2) RecName: Full=U3 small nucleolar RNA-associated protein... 40 0.054
BC153251_1(BC153251|pid:none) Bos taurus coatomer protein comple... 40 0.054
CP000584_172(CP000584|pid:none) Ostreococcus lucimarinus CCE9901... 40 0.071
(Q9H967) RecName: Full=WD repeat-containing protein 76; &AK0230... 40 0.071
(Q00808) RecName: Full=Vegetative incompatibility protein HET-E-... 40 0.071
AF326339_1(AF326339|pid:none) Aedes aegypti unknown protein i8 m... 40 0.071
FM992688_1169(FM992688|pid:none) Candida dubliniensis CD36 chrom... 40 0.071
EU954724_1(EU954724|pid:none) Zea mays clone 1479275 WD-repeat p... 40 0.071
T19550(T19550;T20311) hypothetical protein D1054.15 - Caenorhabd... 40 0.071
S33263(S33263;S45729;A54593)transcription initiation factor IID-... 40 0.071
BC108505_1(BC108505|pid:none) Xenopus laevis hypothetical protei... 40 0.071
AC159430_45(AC159430|pid:none) Trypanosoma brucei chromosome 3 c... 40 0.071
AE1810(AE1810) WD-40 repeat protein [imported] - Nostoc sp. (str... 40 0.071
BC075251_1(BC075251|pid:none) Xenopus laevis coatomer protein co... 40 0.071
AY525781_1(AY525781|pid:none) Acanthamoeba healyi coronin mRNA, ... 40 0.071
BA000045_2244(BA000045|pid:none) Gloeobacter violaceus PCC 7421 ... 40 0.071
AF326340_1(AF326340|pid:none) Aedes aegypti unknown protein i8 m... 40 0.071
CT827956_2(CT827956|pid:none) Oryza sativa genomic DNA, chromoso... 40 0.071
BC025247_1(BC025247|pid:none) Homo sapiens WD repeat domain 76, ... 40 0.071
AJ719967_1(AJ719967|pid:none) Gallus gallus mRNA for hypothetica... 40 0.071
AL662976_11(AL662976|pid:none) Oryza sativa genomic DNA, chromos... 40 0.071
(P49846) RecName: Full=Transcription initiation factor TFIID sub... 40 0.071
CR382135_388(CR382135|pid:none) Debaryomyces hansenii strain CBS... 40 0.071
(Q6PE01) RecName: Full=U5 small nuclear ribonucleoprotein 40 kDa... 40 0.071
CP001577_123(CP001577|pid:none) Micromonas sp. RCC299 chromosome... 40 0.071
BC075582_1(BC075582|pid:none) Xenopus tropicalis TAF5-like RNA p... 40 0.071
AP007151_34(AP007151|pid:none) Aspergillus oryzae RIB40 genomic ... 40 0.071
AF323583_1(AF323583|pid:none) Podospora anserina beta transducin... 40 0.071
AY064077_1(AY064077|pid:none) Aedes aegypti clone unKRc2 unknown... 40 0.071
AF083383_1(AF083383|pid:none) Homo sapiens 38kDa splicing factor... 40 0.071
AL672123_5(AL672123|pid:none) Mouse DNA sequence from clone RP23... 39 0.092
AL929302_6(AL929302|pid:none) Human DNA sequence from clone RP11... 39 0.092
AL929302_3(AL929302|pid:none) Human DNA sequence from clone RP11... 39 0.092
AK078349_1(AK078349|pid:none) Mus musculus 10 days neonate cereb... 39 0.092
(Q498F0) RecName: Full=WD repeat-containing protein 44; &BC1002... 39 0.092
AM393332_1(AM393332|pid:none) Synthetic construct Homo sapiens c... 39 0.092
AL732349_15(AL732349|pid:none) Oryza sativa genomic DNA, chromos... 39 0.092
CP001037_4818(CP001037|pid:none) Nostoc punctiforme PCC 73102, c... 39 0.092
AK091911_1(AK091911|pid:none) Homo sapiens cDNA FLJ34592 fis, cl... 39 0.092
BC028697_1(BC028697|pid:none) Homo sapiens WD repeat domain 44, ... 39 0.092
(Q04225) RecName: Full=Ribosome assembly protein RRB1; &S53061(... 39 0.092
(Q60973) RecName: Full=Histone-binding protein RBBP7; AltName: F... 39 0.092
CT573213_5030(CT573213|pid:none) Frankia alni str. ACN14A chromo... 39 0.092
AF323582_1(AF323582|pid:none) Podospora anserina beta transducin... 39 0.092
AJ011114_1(AJ011114|pid:none) Drosophila melanogaster mRNA for c... 39 0.092
AF106576_4(AF106576|pid:none) Caenorhabditis elegans cosmid W07E... 39 0.092
AE014296_334(AE014296|pid:none) Drosophila melanogaster chromoso... 39 0.092
AM910994_105(AM910994|pid:none) Plasmodium knowlesi strain H chr... 39 0.092

>AC068039_1(AC068039|pid:none) Homo sapiens BAC clone RP11-703L16
from 2, complete sequence.
Length = 562

Score = 149 bits (375), Expect = 8e-35
Identities = 66/138 (47%), Positives = 90/138 (65%), Gaps = 1/138 (0%)
Frame = +1

Query: 1 GTEEGVICQAGRHGNRIVMNERYKGHFGPITSVDLHPSKGGADFSQYFLSSSTDWTCKLW 180
G+EEG + A RHG++ ++E ++GH GPIT + H + G DFS F++SS DWT KLW
Sbjct: 374 GSEEGSVYTACRHGSKAGISEMFEGHQGPITGIHCHAAVGAVDFSHLFVTSSFDWTVKLW 433

Query: 181 SSKKETPLYSFEDYVDYVYDARWSPVHPSIFSTGDGSGTLSLWDXNQDLEAPIFRHKI-S 357
++K PLYSFED DYVYD WSP HP++F+ DG G L LW+ N D E P +
Sbjct: 434 TTKNNKPLYSFEDNADYVYDVMWSPTHPALFACVDGMGRLDLWNLNNDTEVPTASISVEG 493

Query: 358 NRSVNRLAWSHDGKRILV 411
N ++NR+ W+H G+ I V
Sbjct: 494 NPALNRVRWTHSGREIAV 511

Score = 33.9 bits (76), Expect = 3.9
Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
Frame = +1

Query: 160 DWTCKLWSSK--KETPLYSFEDYVDYVYDARWSPVHPSIFSTGDGSGTLSLWDXNQDLEA 333
D +W+ K K TP Y F V A ++ HP++ G SG + LWD +
Sbjct: 234 DGVALVWNMKYKKTTPEYVFHCQ-SAVMSATFAKFHPNLVVGGTYSGQIVLWDNRSNKRT 292

Query: 334 PIFRHKIS 357
P+ R +S
Sbjct: 293 PVQRTPLS 300

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3268448
Number of Hits to DB: 889,873,358
Number of extensions: 16821365
Number of successful extensions: 61930
Number of sequences better than 10.0: 1174
Number of HSP's gapped: 61426
Number of HSP's successfully gapped: 1547
Length of query: 207
Length of database: 1,061,185,681
Length adjustment: 123
Effective length of query: 84
Effective length of database: 659,166,577
Effective search space: 55369992468
Effective search space used: 55369992468
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 31 (16.5 bits)

PSORT

psg: 0.75 gvh: 0.40 alm: 0.54 top: 0.53 tms: 0.00 mit: 0.19 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.50
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

40.0 %: nuclear
28.0 %: cytoplasmic
8.0 %: Golgi
8.0 %: mitochondrial
4.0 %: cytoskeletal
4.0 %: endoplasmic reticulum
4.0 %: vacuolar
4.0 %: vesicles of secretory system

>> prediction for Contig-U04401-1 is nuc

VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 1
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0