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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U04396-1
Contig ID Contig-U04396-1
Contig update 2001. 8.29
Contig sequence 
>Contig-U04396-1 (Contig-U04396-1Q) /CSM_Contig/Contig-U04396-1Q.Seq.d
TATAAAGATATATATATAGATATTATGTCAGAACCACAACAACAACAAGT
TAATTTAGGATCATTATCCTTAGAACAATTACAGATGGTTCGTGAACAAG
TTGAAGCTGAAATTCAACAACTTTCAGAATCAATTCAACAACTCAAACAT
GCATCAAATAAGTATATAGAAGCTAAAGAAGCTATGGGTGGTCTTAAAGG
TACTGATGGAAAAGATATGTTAGTTCCATTAACTTCATCTATATATTTAC
CAGGTAAAATAAATAGTAATGAAAAAGTTTTAGTTGATATTGGTACTGGT
TATTATGTTGAAATGGGTATTGAACAAGGTCAAAATTTTTCAAATAGAAA
AGTTCAATTAATTACAGAACAAGTTAATAAAGTTCAAACTGCAATCAATA
TGAAAAGACAAAATTTAGAATCAATTGTTCAAGTTGCACAATCAAAAATA
TCTCTTTACAAACAACAACAAGCACAACAATCACAGCAACAAGTACAACN
ATAATAATAACAANATATATAAATATAA
Gap no gap
Contig length 528
Chromosome number (1..6, M) 3
Chromosome length 6358359
Start point 3528412
End point 3528933
Strand (PLUS/MINUS) PLUS
Number of clones 1
Number of EST 1
Link to clone list U04396
List of clone(s) 

est1=SSA451E,1,529
Translated Amino Acid sequence 
YKDIYIDIMSEPQQQQVNLGSLSLEQLQMVREQVEAEIQQLSESIQQLKHASNKYIEAKE
AMGGLKGTDGKDMLVPLTSSIYLPGKINSNEKVLVDIGTGYYVEMGIEQGQNFSNRKVQL
ITEQVNKVQTAINMKRQNLESIVQVAQSKISLYKQQQAQQSQQQVQX***qxi*i*
Translated Amino Acid sequence (All Frames) 
Frame A:
YKDIYIDIMSEPQQQQVNLGSLSLEQLQMVREQVEAEIQQLSESIQQLKHASNKYIEAKE
AMGGLKGTDGKDMLVPLTSSIYLPGKINSNEKVLVDIGTGYYVEMGIEQGQNFSNRKVQL
ITEQVNKVQTAINMKRQNLESIVQVAQSKISLYKQQQAQQSQQQVQX***qxi*i*


Frame B:
ikiyi*ilcqnhnnnkli*dhyp*nnyrwfvnklklkfnnfqnqfnnsnmhqisi*klkk
lwvvlkvlmekic*fh*lhlyiyqvk*ivmkkf*lilvlvimlkwvlnkvkifqiekfn*
lqnklikfklqsi*kdki*nqlfklhnqkylftnnnkhnnhsnkynxnnnxiyky


Frame C:
*ryiyryyvrttttts*friiilrtitdgs*ts*s*nsttfrinsttqtcik*vyrs*rs
ygws*ry*wkryvssinfiyiftr*nk***ksfs*ywywllc*ngy*trskffk*kssin
yrts**ssncnqyektkfrincssctiknislqtttsttitatsttiiitxyini
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U04396-1 (Contig-U04396-1Q)
/CSM_Contig/Contig-U04396-1Q.Seq.d
         (528 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U04396-1 (Contig-U04396-1Q) /CSM_Contig/Conti...   904  0.0
Contig-U12089-1 (Contig-U12089-1Q) /CSM_Contig/Conti...    38  0.009
Contig-U10772-1 (Contig-U10772-1Q) /CSM_Contig/Conti...    38  0.009
Contig-U09690-1 (Contig-U09690-1Q) /CSM_Contig/Conti...    38  0.009
Contig-U04997-1 (Contig-U04997-1Q) /CSM_Contig/Conti...    38  0.009
Contig-U01359-1 (Contig-U01359-1Q) /CSM_Contig/Conti...    38  0.009
Contig-U12926-1 (Contig-U12926-1Q) /CSM_Contig/Conti...    36  0.037
Contig-U12749-1 (Contig-U12749-1Q) /CSM_Contig/Conti...    36  0.037
Contig-U14881-1 (Contig-U14881-1Q) /CSM_Contig/Conti...    30  2.3
Contig-U11094-1 (Contig-U11094-1Q) /CSM_Contig/Conti...    28  9.0

>Contig-U04396-1 (Contig-U04396-1Q) /CSM_Contig/Contig-U04396-1Q.Seq.d
          Length = 528

 Score =  904 bits (456), Expect = 0.0
 Identities = 456/456 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tataaagatatatatatagatattatgtcagaaccacaacaacaacaagttaatttagga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   tataaagatatatatatagatattatgtcagaaccacaacaacaacaagttaatttagga 60

                                                                       
Query: 61  tcattatccttagaacaattacagatggttcgtgaacaagttgaagctgaaattcaacaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  tcattatccttagaacaattacagatggttcgtgaacaagttgaagctgaaattcaacaa 120

                                                                       
Query: 121 ctttcagaatcaattcaacaactcaaacatgcatcaaataagtatatagaagctaaagaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ctttcagaatcaattcaacaactcaaacatgcatcaaataagtatatagaagctaaagaa 180

                                                                       
Query: 181 gctatgggtggtcttaaaggtactgatggaaaagatatgttagttccattaacttcatct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 gctatgggtggtcttaaaggtactgatggaaaagatatgttagttccattaacttcatct 240

                                                                       
Query: 241 atatatttaccaggtaaaataaatagtaatgaaaaagttttagttgatattggtactggt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 atatatttaccaggtaaaataaatagtaatgaaaaagttttagttgatattggtactggt 300

                                                                       
Query: 301 tattatgttgaaatgggtattgaacaaggtcaaaatttttcaaatagaaaagttcaatta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tattatgttgaaatgggtattgaacaaggtcaaaatttttcaaatagaaaagttcaatta 360

                                                                       
Query: 361 attacagaacaagttaataaagttcaaactgcaatcaatatgaaaagacaaaatttagaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 attacagaacaagttaataaagttcaaactgcaatcaatatgaaaagacaaaatttagaa 420

                                               
Query: 421 tcaattgttcaagttgcacaatcaaaaatatctctt 456
           ||||||||||||||||||||||||||||||||||||
Sbjct: 421 tcaattgttcaagttgcacaatcaaaaatatctctt 456


 Score = 50.1 bits (25), Expect = 2e-06
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                       
Query: 501 ataataataacaanatatataaatataa 528
           ||||||||||||||||||||||||||||
Sbjct: 501 ataataataacaanatatataaatataa 528


>Contig-U12089-1 (Contig-U12089-1Q) /CSM_Contig/Contig-U12089-1Q.Seq.d
          Length = 2047

 Score = 38.2 bits (19), Expect = 0.009
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                  
Query: 1   tataaagatatatatatagatat 23
           |||| ||||||||||||||||||
Sbjct: 353 tatatagatatatatatagatat 331


 Score = 28.2 bits (14), Expect = 9.0
 Identities = 20/22 (90%)
 Strand = Plus / Plus

                                  
Query: 36   acaacaacaacaagttaattta 57
            ||||||||||||| | ||||||
Sbjct: 1123 acaacaacaacaattgaattta 1144


>Contig-U10772-1 (Contig-U10772-1Q) /CSM_Contig/Contig-U10772-1Q.Seq.d
          Length = 4492

 Score = 38.2 bits (19), Expect = 0.009
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                  
Query: 1   tataaagatatatatatagatat 23
           |||| ||||||||||||||||||
Sbjct: 212 tatatagatatatatatagatat 190


 Score = 28.2 bits (14), Expect = 9.0
 Identities = 20/22 (90%)
 Strand = Plus / Plus

                                  
Query: 36   acaacaacaacaagttaattta 57
            ||||||||||||| | ||||||
Sbjct: 3571 acaacaacaacaattgaattta 3592


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 16,894
Number of Sequences: 6905
Number of extensions: 16894
Number of successful extensions: 5722
Number of sequences better than 10.0: 723
length of query: 528
length of database: 5,674,871
effective HSP length: 16
effective length of query: 512
effective length of database: 5,564,391
effective search space: 2848968192
effective search space used: 2848968192
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)
dna update 2009. 6.19
Homology vs DNA 
Query= Contig-U04396-1 (Contig-U04396-1Q) /CSM_Contig/Contig-U04396-1Q.Seq.d
         (528 letters)

Database: ddbj_A
           102,105,510 sequences; 101,790,757,118 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(C89647) Dictyostelium discoideum slug cDNA, clone SSA451.        906   0.0    1
(U68246) Dictyostelium discoideum WacA (wacA) gene, complete...   276   8e-70  1
(CR382136) Debaryomyces hansenii strain CBS767 chromosome A ...    38   0.013  2
(EK408456) 1095505102354 Global-Ocean-Sampling_GS-31-01-01-1...    52   0.022  1
(EK408280) 1095505101970 Global-Ocean-Sampling_GS-31-01-01-1...    52   0.022  1
(EK376385) 1095469442226 Global-Ocean-Sampling_GS-31-01-01-1...    52   0.022  1
(EK320782) 1095462428594 Global-Ocean-Sampling_GS-31-01-01-1...    52   0.022  1
(EJ154796) 1092343803847 Global-Ocean-Sampling_GS-27-01-01-1...    52   0.022  1
(ES516774) BIG_AF_24592 Brine Shrimp embryos, 15 hours after...    52   0.022  1
(AC201032) Strongylocentrotus purpuratus clone R3-12J12, WOR...    40   0.073  4
(AE014825) Plasmodium falciparum 3D7 chromosome 14 section 1...    34   0.20   7
(AB007648) Arabidopsis thaliana genomic DNA, chromosome 5, P...    44   0.26   3
(AC092638) Homo sapiens BAC clone RP11-363G3 from 2, complet...    36   0.30   3
(BX469936) Zebrafish DNA sequence from clone DKEY-32I12 in l...    48   0.34   1
(BX465837) Zebrafish DNA sequence from clone DKEY-27C15 in l...    48   0.34   1
(AC098687) Bos taurus clone rp42-194o5, complete sequence.         48   0.34   1
(FP017254) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    48   0.34   1
(CR749768) Zebrafish DNA sequence *** SEQUENCING CANCELLED *...    48   0.34   1
(AC224135) Bos taurus clone CH240-449D14, WORKING DRAFT SEQU...    48   0.34   1
(AC164813) Bos taurus clone CH240-156O15, *** SEQUENCING IN ...    48   0.34   1
(DR435905) ACAB-aaa39b01.g1 Hydra UCI6- barcoded EST's Hydra...    48   0.34   1
(DN253393) ACAB-aab75e20.g1 Hydra UCI6- barcoded EST's Hydra...    48   0.34   1
(DN242678) ACAD-aab11b17.g1 Hydra_EST_UCI-8 Hydra magnipapil...    48   0.34   1
(DN136738) ACAB-aaa85d14.g1 Hydra UCI6- barcoded EST's Hydra...    48   0.34   1
(CN773506) tae61f02.y1 Hydra EST Darmstadt I Hydra magnipapi...    48   0.34   1
(CN773171) tae61f02.x1 Hydra EST Darmstadt I Hydra magnipapi...    48   0.34   1
(CN772494) tad82d03.y1 Hydra EST Darmstadt I Hydra magnipapi...    48   0.34   1
(CN772247) tad82d03.x1 Hydra EST Darmstadt I Hydra magnipapi...    48   0.34   1
(CN770163) taf77a04.y1 Hydra EST Darmstadt I Hydra magnipapi...    48   0.34   1
(CN628382) tae95d02.x1 Hydra EST Darmstadt I Hydra magnipapi...    48   0.34   1
(CN558703) tad75b10.y1 Hydra EST Darmstadt I Hydra magnipapi...    48   0.34   1
(CN557435) tae49h08.y1 Hydra EST Darmstadt I Hydra magnipapi...    48   0.34   1
(CN553562) tae26b03.y1 Hydra EST Darmstadt I Hydra magnipapi...    48   0.34   1
(CN553230) tae26b03.x1 Hydra EST Darmstadt I Hydra magnipapi...    48   0.34   1
(CN551598) tad75b10.x2 Hydra EST Darmstadt I Hydra magnipapi...    48   0.34   1
(BP513755) Hydra magnipapillata cDNA, clone:hmp_09941.             48   0.34   1
(EB568208) AGENCOURT_51875906 D. virilis EST Drosophila viri...    34   0.49   3
(EB574500) AGENCOURT_51787280 D. virilis EST Drosophila viri...    34   0.52   3
(CU606906) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   0.54   4
(ER590229) 1093016194435 Global-Ocean-Sampling_GS-36-01-01-2...    40   0.63   2
(AC213924) Populus trichocarpa clone POP042-A21, complete se...    36   0.76   4
(EI684299) SB_BBd11-G18.R SB_BBd Sorghum bicolor genomic 3',...    36   0.83   2
(AC116963) Dictyostelium discoideum chromosome 2 map 4657875...    36   0.92   4
(CD575127) UCRPT01_02dg11_b1 Poncirus trifoliata CTV-challen...    34   0.95   2
(CD575128) UCRPT01_02dg11_g1 Poncirus trifoliata CTV-challen...    34   0.95   2
(CP000382) Clostridium novyi NT, complete genome.                  34   0.99   15
(AC187864) Populus trichocarpa clone Pop1-32E3, complete seq...    36   1.0    5
(CR925812) Zebrafish DNA sequence from clone DKEY-72P6 in li...    46   1.3    1
(AF126423) Sirodotia suecica isolate Rhode Island 1 chloropl...    46   1.3    1
(AF126421) Sirodotia tenuissima isolate Rhode Island 24 chlo...    46   1.3    1
(AF126418) Sirodotia huillensis isolate TX7b chloroplast rbc...    46   1.3    1
(AF126417) Sirodotia suecica isolate Labrador 5a chloroplast...    46   1.3    1
(AF126415) Sirodotia huillensis isolate Mex7 chloroplast rbc...    46   1.3    1
(FB571381) Sequence 248 from Patent EP1865317.                     46   1.3    1
(FB571325) Sequence 192 from Patent EP1865317.                     46   1.3    1
(AE014134) Drosophila melanogaster chromosome 2L, complete s...    46   1.3    1
(AC093197) Drosophila melanogaster clone BACR25N15, complete...    46   1.3    1
(AC006215) Drosophila melanogaster, chromosome 2L, region 38...    46   1.3    1
(AC135068) Homo sapiens chromosome 15, clone RP11-294C11, co...    46   1.3    1
(AC134981) Homo sapiens chromosome 15, clone RP11-361C13, co...    46   1.3    1
(AC134979) Homo sapiens chromosome 15, clone RP11-960P22, co...    46   1.3    1
(AC087455) Homo sapiens, clone RP11-143J24, complete sequence.     46   1.3    1
(AC069382) Homo sapiens chromosome 15, clone RP11-360J18, co...    46   1.3    1
(AC025884) Homo sapiens chromosome 15, clone RP11-603B24, co...    46   1.3    1
(AC010760) Homo sapiens chromosome , clone RP11-2F9, complet...    46   1.3    1
(AC005159) Homo sapiens BAC clone GS1-262D6 from 7, complete...    46   1.3    1
(AC150594) Gasterosteus aculeatus clone CH213-111D10, WORKIN...    46   1.3    1
(AC144356) Danio rerio strain Tue clone CH211-282I21, WORKIN...    46   1.3    1
(AC134780) Homo sapiens chromosome 17 clone RP13-194K19 map ...    46   1.3    1
(AC069331) Homo sapiens chromosome 15 clone RP11-143J24, WOR...    46   1.3    1
(AC060768) Homo sapiens chromosome 2 clone RP11-576I3 map 2,...    46   1.3    1
(AC219811) Bos taurus clone CH240-321G21, WORKING DRAFT SEQU...    46   1.3    1
(AC219626) Bos taurus clone CH240-326P9, WORKING DRAFT SEQUE...    46   1.3    1
(AC017886) Drosophila melanogaster, *** SEQUENCING IN PROGRE...    46   1.3    1
(AZ678183) ENTML39TR Entamoeba histolytica Sheared DNA Entam...    46   1.3    1
(DX490890) Cpl32707 Papaya Genomic DNA BAC Library Carica pa...    46   1.3    1
(DN578343) 92231628 Sea Urchin primary mesenchyme cell cDNA ...    46   1.3    1
(CD308209) StrPu691.010576 Sea urchin larva cDNA library MPM...    46   1.3    1
(EX162306) MW_DP0264 Dermatophagoides pteronyssinus cDNA lib...    46   1.3    1
(DY885997) CeleSEQ1465 Cunninghamella elegans pBluescript (E...    32   1.7    3
(BX560190) Glossina morsitans morsitans (Tseatse fly) EST fr...    36   1.7    2
(CU463960) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    34   2.0    6
(AE014833) Plasmodium falciparum 3D7 chromosome 10 section 5...    38   2.0    3
(DY894122) CeleSEQ13620 Cunninghamella elegans pBluescript (...    32   2.1    3
(X04465) Marchantia polymorpha chloroplast genome DNA.             36   2.3    5
(AL844509) Plasmodium falciparum chromosome 13.                    40   2.5    4
(AC098595) Homo sapiens BAC clone RP11-495L18 from 4, comple...    32   2.7    2
(CT573275) Zebrafish DNA sequence from clone CH211-94I18 in ...    32   2.7    2
(CR450768) Zebrafish DNA sequence from clone CH211-225H10 in...    32   2.7    2
(AC225426) Pteropus vampyrus clone CH279-372G17, WORKING DRA...    36   2.7    6
(AL408054) T3 end of clone AV0AA006C06 of library AV0AA from...    36   2.8    2
(CU019656) Zebrafish DNA sequence from clone DKEY-234C19 in ...    42   2.8    3
(AL844506) Plasmodium falciparum chromosome  7.                    40   2.8    3
(AC171134) Helobdella robusta clone CH306-1A5, complete sequ...    36   2.9    4
(DY887613) CeleSEQ4095 Cunninghamella elegans pBluescript (E...    32   2.9    3
(AC111756) Rattus norvegicus clone CH230-248C14, *** SEQUENC...    32   3.1    6
(CU019563) Zebrafish DNA sequence from clone DKEYP-87A6 in l...    34   3.3    5
(EI775129) PM1009B24TF BAC library from the prostate metasta...    32   3.5    2
(EI776290) PM1011A06TF BAC library from the prostate metasta...    32   3.6    2
(AC118148) Rattus norvegicus clone CH230-382K14, *** SEQUENC...    40   3.7    6
(CU302245) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    38   3.9    3
(AC199999) Callicebus moloch clone LB5-241N6, WORKING DRAFT ...    38   4.0    3
(AC092084) Bos taurus clone RP42-324J6, WORKING DRAFT SEQUEN...    36   4.3    5
(BX120001) Zebrafish DNA sequence from clone CH211-217J8 in ...    42   4.3    5
(AE014846) Plasmodium falciparum 3D7 chromosome 12, section ...    34   4.3    6
(AC200938) Strongylocentrotus purpuratus clone R3-1028E21, W...    42   4.5    2
(AL928801) Mouse DNA sequence from clone RP23-116P4 on chrom...    44   5.3    1
(AC134583) Mus musculus BAC clone RP24-94C12 from chromosome...    44   5.3    1
(FM992690) Candida dubliniensis CD36 chromosome 3, complete ...    44   5.3    1
(DQ209854) Maxillaria galantha atpB-rbcL intergenic spacer, ...    44   5.3    1
(DQ209853) Maxillaria carolii atpB-rbcL intergenic spacer, p...    44   5.3    1
(DQ209850) Maxillaria huebschii atpB-rbcL intergenic spacer,...    44   5.3    1
(DQ209845) Maxillaria guareimensis atpB-rbcL intergenic spac...    44   5.3    1
(DQ209842) Maxillaria lepidota atpB-rbcL intergenic spacer, ...    44   5.3    1
(DQ209841) Maxillaria aff. nutans Whitten 2912 atpB-rbcL int...    44   5.3    1
(DQ209838) Maxillaria platypetala atpB-rbcL intergenic space...    44   5.3    1
(DQ209813) Maxillaria woytkowskii atpB-rbcL intergenic space...    44   5.3    1
(DQ209810) Maxillaria patens atpB-rbcL intergenic spacer, pa...    44   5.3    1
(DQ209802) Maxillaria longipes atpB-rbcL intergenic spacer, ...    44   5.3    1
(DQ209799) Maxillaria silvana atpB-rbcL intergenic spacer, p...    44   5.3    1
(DQ209798) Maxillaria longissima atpB-rbcL intergenic spacer...    44   5.3    1
(DQ209795) Maxillaria angustissima atpB-rbcL intergenic spac...    44   5.3    1
(DQ209791) Maxillaria ecuadorensis atpB-rbcL intergenic spac...    44   5.3    1
(DQ209788) Maxillaria patens atpB-rbcL intergenic spacer, pa...    44   5.3    1
(DQ209773) Maxillaria pachyacron atpB-rbcL intergenic spacer...    44   5.3    1
(DQ209772) Maxillaria oreocharis atpB-rbcL intergenic spacer...    44   5.3    1
(DQ209767) Maxillaria cf. anatomorum Whitten 2645 atpB-rbcL ...    44   5.3    1
(DQ209763) Maxillaria cf. confusa Whitten 2638 atpB-rbcL int...    44   5.3    1
(DQ209762) Maxillaria angustissima atpB-rbcL intergenic spac...    44   5.3    1
(DQ209757) Maxillaria sp. Whitten 2632 atpB-rbcL intergenic ...    44   5.3    1
(DQ209748) Maxillaria oreocharis atpB-rbcL intergenic spacer...    44   5.3    1
(DQ209739) Maxillaria jucunda atpB-rbcL intergenic spacer, p...    44   5.3    1
(DQ209738) Maxillaria eburnea atpB-rbcL intergenic spacer, p...    44   5.3    1
(DQ209728) Maxillaria oreocharis atpB-rbcL intergenic spacer...    44   5.3    1
(DQ209724) Maxillaria jucunda atpB-rbcL intergenic spacer, p...    44   5.3    1
(DQ209719) Maxillaria elegantula atpB-rbcL intergenic spacer...    44   5.3    1
(DQ209717) Maxillaria longipes atpB-rbcL intergenic spacer, ...    44   5.3    1
(DQ209714) Maxillaria irrorata atpB-rbcL intergenic spacer, ...    44   5.3    1
(DQ209698) Maxillaria longipes atpB-rbcL intergenic spacer, ...    44   5.3    1
(DQ209684) Maxillaria alticola atpB-rbcL intergenic spacer, ...    44   5.3    1
(DQ209676) Maxillaria cf. silvana Whitten 2485 atpB-rbcL int...    44   5.3    1
(DQ209657) Maxillaria molitor atpB-rbcL intergenic spacer, p...    44   5.3    1
(DQ209656) Maxillaria molitor atpB-rbcL intergenic spacer, p...    44   5.3    1
(DQ209650) Maxillaria lepidota atpB-rbcL intergenic spacer, ...    44   5.3    1
(DQ209647) Maxillaria longissima atpB-rbcL intergenic spacer...    44   5.3    1
(DQ209640) Maxillaria longibracteata atpB-rbcL intergenic sp...    44   5.3    1
(DQ209639) Maxillaria cf. bennettii Whitten 2388 atpB-rbcL i...    44   5.3    1
(DQ209636) Maxillaria marmoliana atpB-rbcL intergenic spacer...    44   5.3    1
(DQ209629) Maxillaria confusa atpB-rbcL intergenic spacer, p...    44   5.3    1
(DQ209628) Maxillaria cf. triloris Whitten 2366 atpB-rbcL in...    44   5.3    1
(DQ209626) Maxillaria whittenii atpB-rbcL intergenic spacer,...    44   5.3    1
(DQ209624) Maxillaria richii atpB-rbcL intergenic spacer, pa...    44   5.3    1
(DQ209603) Maxillaria alba atpB-rbcL intergenic spacer, part...    44   5.3    1
(DQ209577) Maxillaria ferdinandiana atpB-rbcL intergenic spa...    44   5.3    1
(DQ209569) Maxillaria turkeliae atpB-rbcL intergenic spacer,...    44   5.3    1
(DQ209568) Maxillaria cf. rufescens Whitten 1669 atpB-rbcL i...    44   5.3    1
(DQ209566) Maxillaria aff. lepidota Whitten 1665 atpB-rbcL i...    44   5.3    1
(DQ209562) Maxillaria ecuadorensis atpB-rbcL intergenic spac...    44   5.3    1
(DQ209556) Maxillaria brachybulbon atpB-rbcL intergenic spac...    44   5.3    1
(DQ209553) Maxillaria ecuadorensis atpB-rbcL intergenic spac...    44   5.3    1
(DQ209544) Maxillaria echinophyta atpB-rbcL intergenic space...    44   5.3    1
(DQ209540) Maxillaria echinophyta atpB-rbcL intergenic space...    44   5.3    1
(DQ209538) Maxillaria cf. luteoalba SEL 1974-0006-0961 atpB-...    44   5.3    1
(DQ209537) Maxillaria attenuata atpB-rbcL intergenic spacer,...    44   5.3    1
(DQ209529) Maxillaria setigera atpB-rbcL intergenic spacer, ...    44   5.3    1
(DQ209504) Maxillaria echinophyta atpB-rbcL intergenic space...    44   5.3    1
(DQ209499) Maxillaria robusta atpB-rbcL intergenic spacer, p...    44   5.3    1
(DQ209498) Maxillaria rufescens atpB-rbcL intergenic spacer,...    44   5.3    1
(DQ209489) Maxillaria hedwigiae atpB-rbcL intergenic spacer,...    44   5.3    1
(DQ209478) Maxillaria alba atpB-rbcL intergenic spacer, part...    44   5.3    1
(DQ209459) Maxillaria bradei atpB-rbcL intergenic spacer, pa...    44   5.3    1
(DQ209458) Maxillaria johannis atpB-rbcL intergenic spacer, ...    44   5.3    1
(DQ209453) Maxillaria setigera atpB-rbcL intergenic spacer, ...    44   5.3    1
(DQ209449) Maxillaria ferdinandiana atpB-rbcL intergenic spa...    44   5.3    1
(DQ209442) Maxillaria pumila atpB-rbcL intergenic spacer, pa...    44   5.3    1
(DQ209440) Maxillaria ferdinandiana atpB-rbcL intergenic spa...    44   5.3    1
(DQ209431) Maxillaria juergensii atpB-rbcL intergenic spacer...    44   5.3    1
(DQ209426) Maxillaria kautskyi atpB-rbcL intergenic spacer, ...    44   5.3    1
(DQ209411) Maxillaria ramonensis atpB-rbcL intergenic spacer...    44   5.3    1
(DQ209396) Maxillaria picta atpB-rbcL intergenic spacer, par...    44   5.3    1
(DQ209387) Maxillaria fractiflexa atpB-rbcL intergenic space...    44   5.3    1
(DQ209386) Maxillaria cf. hillsii Blanco 2954 atpB-rbcL inte...    44   5.3    1
(DQ209374) Maxillaria pachyacron atpB-rbcL intergenic spacer...    44   5.3    1
(DQ209370) Maxillaria atwoodiana atpB-rbcL intergenic spacer...    44   5.3    1
(DQ209369) Maxillaria angustissima atpB-rbcL intergenic spac...    44   5.3    1
(DQ209340) Maxillaria cf. grandiflora Atwood & Whitten 6265 ...    44   5.3    1
(DQ209335) Maxillaria pachyacron atpB-rbcL intergenic spacer...    44   5.3    1
(DQ209330) Maxillaria aff. ubatubana Atwood & Whitten 5099 a...    44   5.3    1
(DQ209325) Maxillaria endresii atpB-rbcL intergenic spacer, ...    44   5.3    1
(DQ209320) Maxillaria oreocharis atpB-rbcL intergenic spacer...    44   5.3    1
(DQ209311) Maxillaria richii atpB-rbcL intergenic spacer, pa...    44   5.3    1
(DQ209310) Maxillaria hedwigiae atpB-rbcL intergenic spacer,...    44   5.3    1
(DQ209301) Maxillaria alba atpB-rbcL intergenic spacer, part...    44   5.3    1
(AY096400) Arabidopsis thaliana putative c-myc binding prote...    44   5.3    1
(AY086872) Arabidopsis thaliana clone 28832 mRNA, complete s...    44   5.3    1
(AY063957) Arabidopsis thaliana putative c-myc binding prote...    44   5.3    1
(AM426345) Vitis vinifera contig VV78X264065.7, whole genome...    44   5.3    1
(AC149542) Populus trichocarpa clone Pop1-2C5, complete sequ...    44   5.3    1
(AR553216) Sequence 8347 from patent US 6747137.                   44   5.3    1
(AC025164) Homo sapiens 12 BAC RP11-796E2 (Roswell Park Canc...    44   5.3    1
(AC160783) Bos taurus clone CH240-95G7, WORKING DRAFT SEQUEN...    44   5.3    1
(AC153400) Bos taurus clone CH240-19G4, WORKING DRAFT SEQUEN...    44   5.3    1
(AC152034) Dasypus novemcinctus clone VMRC5-215O8, WORKING D...    44   5.3    1
(AC111697) Rattus norvegicus clone CH230-20C20, WORKING DRAF...    44   5.3    1
(AC094987) Rattus norvegicus clone CH230-6E15, *** SEQUENCIN...    44   5.3    1
(CU928740) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   5.3    1
(CU855487) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   5.3    1
(AC233819) Choloepus hoffmanni clone CH281-735C15, WORKING D...    44   5.3    1
(AC232615) Choloepus hoffmanni clone CH281-419B16, WORKING D...    44   5.3    1
(AC222041) Bos taurus clone CH240-373J18, WORKING DRAFT SEQU...    44   5.3    1
(AC221632) Bos taurus clone CH240-390G20, WORKING DRAFT SEQU...    44   5.3    1
(AC221626) Bos taurus clone CH240-390D16, WORKING DRAFT SEQU...    44   5.3    1
(AC221235) Bos taurus clone CH240-400G21, WORKING DRAFT SEQU...    44   5.3    1
(AC216404) Solanum lycopersicum chromosome 9 clone C09SLm010...    44   5.3    1
(AC216315) Tupaia belangeri clone CH275-495D13, WORKING DRAF...    44   5.3    1
(AC199670) Eulemur macaco macaco clone CH273-214N2, WORKING ...    44   5.3    1
(AC183362) Dasypus novemcinctus clone VMRC5-18H5, WORKING DR...    44   5.3    1
(AC163136) Bos taurus clone CH240-124F4, WORKING DRAFT SEQUE...    44   5.3    1
(EK354337) 1095468414015 Global-Ocean-Sampling_GS-31-01-01-1...    44   5.3    1
(EI460897) PV_GBa0064F10.r PV_GBa Phaseolus vulgaris genomic...    44   5.3    1
(ED196975) AUAC-aaf88e01.b1 Ascaris suum whole genome shotgu...    44   5.3    1
(DH584309) Rattus norvegicus DNA, BAC clone: RNB1-104G12, 5'...    44   5.3    1
(CZ538920) SRAA-aad22f09.b1 Strongyloides ratti whole genome...    44   5.3    1
(CW733561) MARC_793345 CHORI-240-333H8 Bos taurus genomic cl...    44   5.3    1
(CT955299) Arabidopsis thaliana T-DNA flanking sequence GK-9...    44   5.3    1
(CL017574) CH216-2F18_RM1.1 CH216 Xenopus (Silurana) tropica...    44   5.3    1
(BH860598) ORNL071 Poplar BAC Library Populus trichocarpa ge...    44   5.3    1
(ES139407) 165991_2282_3779 Arabidopsis ovule high throughpu...    44   5.3    1
(ES011643) 047097_0635_0384 Arabidopsis ovule high throughpu...    44   5.3    1
(EH911972) EBENXNS01CP14U 8-day Arabidopsis seedlings, aeria...    44   5.3    1
(EH256850) JGI_ACAC1532.rev ACAC Phakopsora pachyrhizi TW72-...    44   5.3    1
(EH240298) JGI_ACAC1721.rev ACAC Phakopsora pachyrhizi TW72-...    44   5.3    1
(EH236656) JGI_ACAC9777.rev ACAC Phakopsora pachyrhizi TW72-...    44   5.3    1
(EH236589) JGI_ACAC9738.rev ACAC Phakopsora pachyrhizi TW72-...    44   5.3    1
(EH236242) JGI_ACAC18276.rev ACAC Phakopsora pachyrhizi TW72...    44   5.3    1
(EH228339) JGI_ACAC4697.rev ACAC Phakopsora pachyrhizi TW72-...    44   5.3    1
(AV790317) Arabidopsis thaliana cDNA clone:RAFL06-87-O05, 3'...    44   5.3    1
(AV786221) Arabidopsis thaliana cDNA clone:RAFL06-70-E23, 3'...    44   5.3    1
(AV537668) Arabidopsis thaliana cDNA clone:RZ100c09F, 3' end.      44   5.3    1
(DY266191) IC0AAA19BH10RM1 CitNFL Citrus clementina cDNA 5',...    44   5.3    1
(DT665780) He_wd2a1_55B04_M13R Heliconius erato wing disk 2 ...    44   5.3    1
(DR254844) 1105276 CERES-147 Arabidopsis thaliana cDNA clone...    44   5.3    1
(DR254843) 1133805 CERES-147 Arabidopsis thaliana cDNA clone...    44   5.3    1
(DR254842) 147280 CERES-148 Arabidopsis thaliana cDNA clone ...    44   5.3    1
(DR254841) 63143 CERES-147 Arabidopsis thaliana cDNA clone 2...    44   5.3    1
(DR254840) 4502891 CERES-148 Arabidopsis thaliana cDNA clone...    44   5.3    1
(DR254839) 12825990 CERES-AN65 Arabidopsis thaliana cDNA clo...    44   5.3    1
(DR254838) 1102353 CERES-148 Arabidopsis thaliana cDNA clone...    44   5.3    1
(DR254837) 39845 CERES-147 Arabidopsis thaliana cDNA clone 5...    44   5.3    1
(DR254836) 35856 CERES-148 Arabidopsis thaliana cDNA clone 1...    44   5.3    1
(DN569388) 91549032 Sea Urchin primary mesenchyme cell cDNA ...    44   5.3    1
(AM874304) Venerupis (Ruditapes) philippinarum EST, 5' end s...    44   5.3    1
(CJ902370) Triticum aestivum cDNA clone:whthkles28b18, 5' end.     44   5.3    1
(AJ955220) Sus scrofa EST, clone C0007747a02, 5' direction.        44   5.3    1
(AI997225) 701552758 A. thaliana, Columbia Col-0, root-2 Ara...    44   5.3    1
(BP834190) Arabidopsis thaliana cDNA clone:RAFL22-98-N09, 5'...    44   5.3    1
(BP818404) Arabidopsis thaliana cDNA clone:RAFL22-48-A13, 5'...    44   5.3    1
(BJ423900) Dictyostelium discoideum cDNA clone:ddv50c24, 5' ...    44   5.3    1
(GE906998) 9545023_M17.ab1_c Past_norm2007 Porites astreoide...    44   5.3    1
(FK863126) 0000099973F12 D. serrata mRNA from different deve...    44   5.3    1
(FC475263) CAXH7713.rev CAXH Mnemiopsis leidyi whole animal ...    44   5.3    1
(FC464080) CAXH2285.rev CAXH Mnemiopsis leidyi whole animal ...    44   5.3    1
(EY553572) CAWT20425.rev CAWT Capitella sp. I ECS-2004 Prima...    44   5.3    1
(EW244937) rhlv19b_k10.y1 hlv Sus scrofa cDNA 5', mRNA seque...    44   5.3    1
(ES492772) BIG_AF_588 Brine Shrimp Adult (20 days after hatc...    44   5.3    1
(AV824457) Arabidopsis thaliana cDNA clone:RAFL06-70-E23, 5'...    44   5.3    1
(BX324231) Zebrafish DNA sequence from clone DKEY-57H18 in l...    32   5.3    4
(AC171136) Helobdella robusta clone CH306-1A7, complete sequ...    36   5.5    5
(AC202361) Medicago truncatula clone mth2-57i21, WORKING DRA...    34   5.7    4
(AC113870) Rattus norvegicus clone CH230-291M19, *** SEQUENC...    34   5.7    5
(DB329148) Homo sapiens cDNA clone PLACE7018908, 3' end, mRN...    40   5.7    2
(AQ800936) HS_5249_B2_C05_T7A RPCI-11 Human Male BAC Library...    36   5.9    2
(CU695274) Brassica rapa subsp. pekinensis clone KBrB103L05,...    34   6.0    4
(AL844515) Mouse DNA sequence from clone RP23-133G5 on chrom...    36   6.3    4
(AI373980) SWOvAFCAP32A06SK Onchocerca volvulus adult female...    30   6.6    3
(AC159496) Bos taurus clone CH240-74I3, WORKING DRAFT SEQUEN...    38   6.9    4
(AC157419) Bos taurus clone CH240-62L15, WORKING DRAFT SEQUE...    42   7.0    2
(AC233112) Medicago truncatula clone mth2-171e20, WORKING DR...    34   7.0    5
(ED700531) GM_WBb0042N18.f GM_WBb Glycine max genomic clone ...    36   7.2    2
(AM432430) Vitis vinifera contig VV78X216460.7, whole genome...    40   7.4    4
(AC176325) Strongylocentrotus purpuratus clone R3-3054K20, W...    38   7.5    4
(EK028106) 1092955385670 Global-Ocean-Sampling_GS-31-01-01-1...    40   7.6    2
(CC736344) PUIAC69TB ZM_0.6_1.0_KB Zea mays genomic clone ZM...    34   7.6    2
(AC101763) Mus musculus chromosome 1, clone RP24-468E2, comp...    38   7.7    4
(FM992688) Candida dubliniensis CD36 chromosome 1, complete ...    32   7.7    2
(EB587526) AGENCOURT_51919707 D. ananassae EST Drosophila an...    36   7.8    2
(ER332381) 1092344275037 Global-Ocean-Sampling_GS-34-01-01-1...    38   7.8    2
(AL135919) Human DNA sequence *** SEQUENCING CANCELLED *** f...    38   7.9    4
(CU138503) Zebrafish DNA sequence from clone CH211-114C17.         32   8.0    6
(EB584965) AGENCOURT_51773219 D. ananassae EST Drosophila an...    36   8.1    2
(EB583195) AGENCOURT_51878480 D. ananassae EST Drosophila an...    36   8.1    2
(EU204642) Peromyscus maniculatus beta-globin gene cluster, ...    42   8.2    5
(BZ070256) lkj38c11.b1 B.oleracea002 Brassica oleracea genom...    34   8.3    2
(CX969797) JGI_CAAP6028.fwd NIH_XGC_tropInt1 Xenopus (Silura...    40   8.4    2
(BX927240) Zebrafish DNA sequence from clone DKEY-16N13 in l...    34   8.5    5
(DV953081) SB03024B2H01.f1 Normalized subtracted Keck-Tagu L...    40   8.5    2
(FE729446) SB05029B2H11.f1 Normalized subtracted Keck-Tagu L...    40   8.5    2
(FG739556) G1145P39RG21.T0 Anolis carolinensis pooled normal...    40   8.6    2
(CT438922) Sus scrofa genomic clone CH242-404I9, genomic sur...    38   8.6    2
(FG739508) G1145P39FG21.T0 Anolis carolinensis pooled normal...    40   9.0    2
(AC024167) Homo sapiens chromosome 3 clone RP11-453F3 map 3p...    32   9.3    5
(AC210360) Solanum lycopersicum chromosome 7 clone C07HBa018...    38   9.5    2
(AC008082) Homo sapiens 3 BAC RP11-73N1 (Roswell Park Cancer...    32   9.6    2
(AC021870) Homo sapiens chromosome 3 clone RP11-55H5, WORKIN...    32   9.6    2
(AC073285) Homo sapiens chromosome 3 clone RP11-308J15, WORK...    32   9.6    2
(CR855305) Zebrafish DNA sequence from clone DKEY-98F17 in l...    30   9.7    2
(AC187725) Pan troglodytes BAC clone CH251-322L9 from chromo...    38   10.0   4

>(C89647) Dictyostelium discoideum slug cDNA, clone SSA451.
          Length = 529

 Score =  906 bits (457), Expect = 0.0
 Identities = 457/457 (100%)
 Strand = Plus / Plus


Query: 1   tataaagatatatatatagatattatgtcagaaccacaacaacaacaagttaatttagga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   tataaagatatatatatagatattatgtcagaaccacaacaacaacaagttaatttagga 60


Query: 61  tcattatccttagaacaattacagatggttcgtgaacaagttgaagctgaaattcaacaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  tcattatccttagaacaattacagatggttcgtgaacaagttgaagctgaaattcaacaa 120


Query: 121 ctttcagaatcaattcaacaactcaaacatgcatcaaataagtatatagaagctaaagaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ctttcagaatcaattcaacaactcaaacatgcatcaaataagtatatagaagctaaagaa 180


Query: 181 gctatgggtggtcttaaaggtactgatggaaaagatatgttagttccattaacttcatct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 gctatgggtggtcttaaaggtactgatggaaaagatatgttagttccattaacttcatct 240


Query: 241 atatatttaccaggtaaaataaatagtaatgaaaaagttttagttgatattggtactggt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 atatatttaccaggtaaaataaatagtaatgaaaaagttttagttgatattggtactggt 300


Query: 301 tattatgttgaaatgggtattgaacaaggtcaaaatttttcaaatagaaaagttcaatta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tattatgttgaaatgggtattgaacaaggtcaaaatttttcaaatagaaaagttcaatta 360


Query: 361 attacagaacaagttaataaagttcaaactgcaatcaatatgaaaagacaaaatttagaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 attacagaacaagttaataaagttcaaactgcaatcaatatgaaaagacaaaatttagaa 420


Query: 421 tcaattgttcaagttgcacaatcaaaaatatctcttt 457
           |||||||||||||||||||||||||||||||||||||
Sbjct: 421 tcaattgttcaagttgcacaatcaaaaatatctcttt 457

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 102105510
Number of Hits to DB: 697,245,521
Number of extensions: 77408261
Number of successful extensions: 6679815
Number of sequences better than 10.0: 309
Length of query: 528
Length of database: 101,790,757,118
Length adjustment: 23
Effective length of query: 505
Effective length of database: 99,442,330,388
Effective search space: 50218376845940
Effective search space used: 50218376845940
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7.30
Homology vs Protein 
Query= Contig-U04396-1 (Contig-U04396-1Q) /CSM_Contig/Contig-U04396-1Q.Seq.d
         (528 letters)

Database: nrp_A
           3,268,448 sequences; 1,061,185,681 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54V55) RecName: Full=Probable prefoldin subunit 5;                  280   2e-74
BC169128_1(BC169128|pid:none) Rattus norvegicus prefoldin subuni...   127   2e-28
BC161278_1(BC161278|pid:none) Xenopus tropicalis hypothetical pr...   125   5e-28
D89667_1(D89667|pid:none) Homo sapiens mRNA for c-myc binding pr...   125   5e-28
(Q9WU28) RecName: Full=Prefoldin subunit 5; AltName: Full=C-myc-...   125   5e-28
(Q5RAY0) RecName: Full=Prefoldin subunit 5;  &CR858881_1(CR85888...   125   5e-28
(Q99471) RecName: Full=Prefoldin subunit 5; AltName: Full=C-myc-...   125   5e-28
AK005682_1(AK005682|pid:none) Mus musculus adult male testis cDN...   125   5e-28
AY891759_1(AY891759|pid:none) Synthetic construct Homo sapiens c...   125   5e-28
BC155162_1(BC155162|pid:none) Danio rerio prefoldin 5, mRNA (cDN...   125   9e-28
BC079502_1(BC079502|pid:none) Danio rerio prefoldin 5, mRNA (cDN...   124   1e-27
BT075223_1(BT075223|pid:none) Osmerus mordax clone omor-eva-509-...   120   2e-26
BT056863_1(BT056863|pid:none) Salmo salar clone ssal-evd-532-285...   118   1e-25
BT081516_1(BT081516|pid:none) Rana catesbeiana clone rcat-evr-50...   117   2e-25
BT047108_1(BT047108|pid:none) Salmo salar clone ssal-evf-505-109...   114   2e-24
EF179458_1(EF179458|pid:none) Xenopsylla cheopis clone XC-93 pre...   102   6e-21
AK005806_1(AK005806|pid:none) Mus musculus adult male testis cDN...   101   1e-20
(O94307) RecName: Full=Probable prefoldin subunit 5; AltName: Fu...    99   9e-20
FN357544_10(FN357544|pid:none) Schistosoma mansoni genome sequen...    98   1e-19
EF087803_1(EF087803|pid:none) Picea sitchensis clone WS02753_C21...    97   3e-19
AE017351_234(AE017351|pid:none) Cryptococcus neoformans var. neo...    96   4e-19
BX842625_17(BX842625|pid:none) Neurospora crassa DNA linkage gro...    96   4e-19
(Q9VCZ8) RecName: Full=Probable prefoldin subunit 5;  &AE014297_...    96   6e-19
FN392320_202(FN392320|pid:none) Pichia pastoris GS115 chromosome...    94   2e-18
DQ848964_1(DQ848964|pid:none) Scophthalmus maximus clone sba758 ...    93   5e-18
CU928169_698(CU928169|pid:none) Kluyveromyces thermotolerans str...    90   3e-17
AK343125_1(AK343125|pid:none) Acyrthosiphon pisum ACYPI007822 mR...    88   1e-16
CR382124_424(CR382124|pid:none) Kluyveromyces lactis strain NRRL...    88   2e-16
EF144910_1(EF144910|pid:none) Populus trichocarpa clone WS01119_...    87   2e-16
AM920431_461(AM920431|pid:none) Penicillium chrysogenum Wisconsi...    87   3e-16
AY231922_1(AY231922|pid:none) Drosophila yakuba clone yak-em_CG7...    86   4e-16
AM270165_45(AM270165|pid:none) Aspergillus niger contig An08c010...    86   6e-16
AE016817_48(AE016817|pid:none) Ashbya gossypii (= Eremothecium g...    84   2e-15
CP001160_161(CP001160|pid:none) Thalassiosira pseudonana CCMP133...    84   2e-15
FM992688_541(FM992688|pid:none) Candida dubliniensis CD36 chromo...    83   4e-15
CR382130_1032(CR382130|pid:none) Yarrowia lipolytica strain CLIB...    78   1e-13
AC159413_44(AC159413|pid:none) Trypanosoma brucei chromosome 7 c...    78   2e-13
(Q21993) RecName: Full=Probable prefoldin subunit 5;  &AF303258_...    75   1e-12
EF506493_1(EF506493|pid:none) Olea europaea putative c-myc bindi...    74   3e-12
AM502240_65(AM502240|pid:none) Leishmania infantum chromosome 22.      71   2e-11
AM494959_61(AM494959|pid:none) Leishmania braziliensis chromosom...    70   3e-11
CT005261_65(CT005261|pid:none) Leishmania major strain Friedlin,...    69   6e-11
CR940347_1058(CR940347|pid:none) Theileria annulata strain Ankar...    65   8e-10
AJ565930_1(AJ565930|pid:none) Platichthys flesus partial mRNA fo...    62   7e-09
CP001463_641(CP001463|pid:none) Thermococcus sibiricus MM 739, c...    60   3e-08
AM910991_260(AM910991|pid:none) Plasmodium knowlesi strain H chr...    60   3e-08
AE014186_273(AE014186|pid:none) Plasmodium falciparum 3D7 chromo...    59   6e-08
(Q9UYI4) RecName: Full=Prefoldin subunit alpha; AltName: Full=Gi...    54   2e-06
(O58263) RecName: Full=Prefoldin subunit alpha; AltName: Full=Gi...    54   2e-06
FJ708508_1(FJ708508|pid:none) Tragopogon dubius isolate S5A c-my...    54   2e-06
(A1RXA9) RecName: Full=Prefoldin subunit alpha; AltName: Full=Gi...    51   2e-05
(A9A592) RecName: Full=Prefoldin subunit alpha; AltName: Full=Gi...    47   4e-04
EU016638_35(EU016638|pid:none) Uncultured Group I marine crenarc...    46   5e-04
EU016655_3(EU016655|pid:none) Uncultured Group I marine crenarch...    45   9e-04
EU016665_8(EU016665|pid:none) Uncultured Group I marine crenarch...    45   0.001
(O27646) RecName: Full=Prefoldin subunit alpha; AltName: Full=Gi...    44   0.003
AK166566_1(AK166566|pid:none) Mus musculus 1 cell embryo 1 cell ...    44   0.003
(Q54HG4) RecName: Full=RNA polymerase II subunit 5-mediating pro...    44   0.003
AM910989_45(AM910989|pid:none) Plasmodium knowlesi strain H chro...    44   0.003
(O28216) RecName: Full=Prefoldin subunit alpha; AltName: Full=Gi...    43   0.004
(A2STI6) RecName: Full=Prefoldin subunit alpha; AltName: Full=Gi...    43   0.004
AK292170_1(AK292170|pid:none) Homo sapiens cDNA FLJ78622 complet...    43   0.006
AX300922_1(AX300922|pid:none) Sequence 6 from Patent WO0185762.        43   0.006
(O94763) RecName: Full=Unconventional prefoldin RPB5 interactor;...    43   0.006
(A0RUF1) RecName: Full=Prefoldin subunit alpha; AltName: Full=Gi...    42   0.007
(Q3TLD5) RecName: Full=Unconventional prefoldin RPB5 interactor;...    42   0.007
BT030747_1(BT030747|pid:none) Bos taurus chromosome 19 open read...    42   0.007
AB385084_1(AB385084|pid:none) Synthetic construct DNA, clone: pF...    42   0.007
(A9A9J3) RecName: Full=Prefoldin subunit alpha; AltName: Full=Gi...    42   0.010
(A6UQB4) RecName: Full=Prefoldin subunit alpha; AltName: Full=Gi...    42   0.013
(A4FW54) RecName: Full=Prefoldin subunit alpha; AltName: Full=Gi...    41   0.016
BT082434_1(BT082434|pid:none) Anoplopoma fimbria clone afim-evh-...    41   0.016
BT083168_1(BT083168|pid:none) Anoplopoma fimbria clone afim-evh-...    40   0.037
(A5UL29) RecName: Full=Prefoldin subunit alpha; AltName: Full=Gi...    40   0.037
BT051913_1(BT051913|pid:none) Medicago truncatula clone MTYF5_F6...    40   0.048
AE008384_809(AE008384|pid:none) Methanosarcina mazei strain Goe1...    39   0.063
(Q8PYQ1) RecName: Full=Prefoldin subunit alpha; AltName: Full=Gi...    39   0.063
(Q6LX82) RecName: Full=Prefoldin subunit alpha; AltName: Full=Gi...    39   0.082
FN357393_57(FN357393|pid:none) Schistosoma mansoni genome sequen...    39   0.082
BT084344_1(BT084344|pid:none) Zea mays full-length cDNA clone ZM...    38   0.14
EU969472_1(EU969472|pid:none) Zea mays clone 330760 protein UXT ...    38   0.14
(Q5JE63) RecName: Full=Prefoldin subunit alpha 2; AltName: Full=...    38   0.18
GM015893_189(GM015893|pid:none) Sequence 723 from Patent EP19234...    38   0.18
(Q63ZY7) RecName: Full=Protein UXT; AltName: Full=Ubiquitously e...    37   0.31
AY064022_1(AY064022|pid:none) Arabidopsis thaliana unknown prote...    37   0.41
BC049791_1(BC049791|pid:none) Mus musculus nuclear mitotic appar...    37   0.41
(Q9WTZ0) RecName: Full=Protein UXT; AltName: Full=Ubiquitously e...    37   0.41
BC026184_1(BC026184|pid:none) Homo sapiens chromosome 19 open re...    37   0.41
CP000509_745(CP000509|pid:none) Nocardioides sp. JS614, complete...    37   0.41
CP000416_1406(CP000416|pid:none) Lactobacillus brevis ATCC 367, ...    36   0.53
(A6VH56) RecName: Full=Prefoldin subunit alpha; AltName: Full=Gi...    36   0.53
AM467863_2(AM467863|pid:none) Vitis vinifera contig VV78X033737....    36   0.53
BC073569_1(BC073569|pid:none) Xenopus laevis hypothetical protei...    36   0.69
(P40957) RecName: Full=Spindle assembly checkpoint component MAD...    36   0.69
AF083242_1(AF083242|pid:none) Homo sapiens HSPC024-iso mRNA, com...    36   0.69
BC081425_1(BC081425|pid:none) Danio rerio zgc:101894, mRNA (cDNA...    35   0.90
BC097757_1(BC097757|pid:none) Xenopus laevis hypothetical protei...    35   0.90
(Q58064) RecName: Full=Prefoldin subunit alpha 2; AltName: Full=...    35   1.2
(Q9UBK9) RecName: Full=Protein UXT; AltName: Full=Ubiquitously e...    35   1.2
AP006627_3953(AP006627|pid:none) Bacillus clausii KSM-K16 DNA, c...    35   1.5
(Q0W5H4) RecName: Full=Prefoldin subunit alpha; AltName: Full=Gi...    34   2.0
CU459004_33(CU459004|pid:none) Magnetospirillum gryphiswaldense ...    34   2.0
CU928174_15(CU928174|pid:none) Zygosaccharomyces rouxii strain C...    34   2.6
CP000123_229(CP000123|pid:none) Mycoplasma capricolum subsp. cap...    34   2.6
CU928166_366(CU928166|pid:none) Kluyveromyces thermotolerans str...    34   2.6
CP000109_477(CP000109|pid:none) Thiomicrospira crunogena XCL-2, ...    34   2.6
CP001080_1290(CP001080|pid:none) Sulfurihydrogenibium sp. YO3AOP...    33   3.4
CP001252_1125(CP001252|pid:none) Shewanella baltica OS223, compl...    33   4.5
CP000891_3334(CP000891|pid:none) Shewanella baltica OS195, compl...    33   4.5
(P08728) RecName: Full=Keratin, type I cytoskeletal 19; AltName:...    33   4.5
CP001321_1266(CP001321|pid:none) Haemophilus parasuis SH0165, co...    33   4.5
CP000563_3158(CP000563|pid:none) Shewanella baltica OS155, compl...    33   4.5
BC096800_1(BC096800|pid:none) Danio rerio zgc:110109, mRNA (cDNA...    33   4.5
(B7HNW0) RecName: Full=Elongation factor P;          Short=EF-P;...    33   5.9
CP000979_12(CP000979|pid:none) Borrelia duttonii Ly plasmid pl16...    33   5.9
(Q54QG5) RecName: Full=Probable E3 ubiquitin-protein ligase DDB_...    33   5.9
CP000979_10(CP000979|pid:none) Borrelia duttonii Ly plasmid pl16...    33   5.9
BC077366_1(BC077366|pid:none) Xenopus laevis MGC81469 protein, m...    33   5.9
CP000790_50(CP000790|pid:none) Vibrio harveyi ATCC BAA-1116 chro...    33   5.9
AX970015_1(AX970015|pid:none) Sequence 818 from Patent EP1104808...    33   5.9
AX972178_1(AX972178|pid:none) Sequence 2981 from Patent EP1104808.     33   5.9
(P53692) RecName: Full=Structural maintenance of chromosomes pro...    32   7.6
(B7HB68) RecName: Full=Elongation factor P;          Short=EF-P;...    32   7.6
AY891355_1(AY891355|pid:none) Synthetic construct Homo sapiens c...    32   7.6
(B7IXI8) RecName: Full=Elongation factor P;          Short=EF-P;...    32   7.6
(Q9P1Y4) RecName: Full=Keratin, type I cytoskeletal 19; AltName:...    32   7.6
(A0RII7) RecName: Full=Elongation factor P;          Short=EF-P;...    32   7.6
AK293479_1(AK293479|pid:none) Homo sapiens cDNA FLJ60424 complet...    32   7.6
AF202321_1(AF202321|pid:none) Homo sapiens keratin 19 (KRT19) ge...    32   7.6
CP001407_4121(CP001407|pid:none) Bacillus cereus 03BB102, comple...    32   7.6
CP000680_2728(CP000680|pid:none) Pseudomonas mendocina ymp, comp...    32   10.0
AE017332_671(AE017332|pid:none) Mycoplasma hyopneumoniae 232, co...    32   10.0
AK001437_1(AK001437|pid:none) Homo sapiens cDNA FLJ10575 fis, cl...    32   10.0
BC170424_1(BC170424|pid:none) Xenopus laevis nonmuscle myosin II...    32   10.0
AB006572_1(AB006572|pid:none) Homo sapiens RMP mRNA for RPB5 mei...    32   10.0
CP000312_1483(CP000312|pid:none) Clostridium perfringens SM101, ...    32   10.0
CP000743_970(CP000743|pid:none) Methanococcus aeolicus Nankai-3,...    32   10.0

>(Q54V55) RecName: Full=Probable prefoldin subunit 5;
          Length = 160

 Score =  280 bits (716), Expect = 2e-74
 Identities = 146/146 (100%), Positives = 146/146 (100%)
 Frame = +1

Query: 25  MSEPQQQQVNLGSLSLEQLQMVREQVEAEIQQLSESIQQLKHASNKYIEAKEAMGGLKGT 204
           MSEPQQQQVNLGSLSLEQLQMVREQVEAEIQQLSESIQQLKHASNKYIEAKEAMGGLKGT
Sbjct: 1   MSEPQQQQVNLGSLSLEQLQMVREQVEAEIQQLSESIQQLKHASNKYIEAKEAMGGLKGT 60

Query: 205 DGKDMLVPLTSSIYLPGKINSNEKVLVDIGTGYYVEMGIEQGQNFSNRKVQLITEQVNKV 384
           DGKDMLVPLTSSIYLPGKINSNEKVLVDIGTGYYVEMGIEQGQNFSNRKVQLITEQVNKV
Sbjct: 61  DGKDMLVPLTSSIYLPGKINSNEKVLVDIGTGYYVEMGIEQGQNFSNRKVQLITEQVNKV 120

Query: 385 QTAINMKRQNLESIVQVAQSKISLYK 462
           QTAINMKRQNLESIVQVAQSKISLYK
Sbjct: 121 QTAINMKRQNLESIVQVAQSKISLYK 146

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3268448
Number of Hits to DB: 549,436,977
Number of extensions: 8430781
Number of successful extensions: 37376
Number of sequences better than 10.0: 137
Number of HSP's gapped: 37063
Number of HSP's successfully gapped: 137
Length of query: 176
Length of database: 1,061,185,681
Length adjustment: 120
Effective length of query: 56
Effective length of database: 668,971,921
Effective search space: 37462427576
Effective search space used: 37462427576
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 30 (16.2 bits)
PSORT 

 psg: 0.75  gvh: 0.38  alm: 0.50  top: 0.53  tms: 0.00  mit: 0.24  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 32.0 %: nuclear
	  8.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: endoplasmic reticulum
	  4.0 %: peroxisomal

>> prediction for Contig-U04396-1 is cyt
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 1
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0