>Contig-U04390-1 (Contig-U04390-1Q) /CSM_Contig/Contig-U04390-1Q.Seq.d
TAAAAAAATAAATAAATAAATAAATAAATAAATAAACTAAAAAATAAAAA
TAAAAATAAAAATAAAAATAAAAATAAAAATAATAATTAAAAAATAAAAA
ATATATAAAATAATAATTAAAAAGAAATGGAATTTTACGAAGCCAAAGCA
TATTCAAATTTATTAAAAAAGAAGAAAACTGGAAATCTATTTAAAAATGA
TCCTACAATAACAACAACAACCACCCAAATAAATAAAGAAGAAATTATTT
CTGATCCTGTTAATATAATAATTAGTGAACAAAATAAAAAATCTAAAAAA
AATATATTACATTTTTTCAAAAAGTTTAAAAATAATAATAATTTAGATAA
TAAAATAATAATTATAGAAAAAGATCAAAATGCTCAAAAAAATTATGAAG
AGGATATTCCCTCTTTAATTTAAATTTAATAAACATTTTATACGAAAATT
TTCGATTTTAAAAAAAAAAAAA

est1=SSF492F,1,473
est2=SSA437F,3,421
est3=SSF492Z,182,469

*knk*ink*inklknknknknknknknnn*kikni*nnn*KEMEFYEAKAYSNLLKKKKT
GNLFKNDPTITTTTTQINKEEIISDPVNIIISEQNKKSKKNILHFFKKFKNNNNLDNKII
IIEKDQNAQKNYEEDIPSLI*i**tfytkifdfkkkk

Frame A:
*knk*ink*inklknknknknknknknnn*kikni*nnn*KEMEFYEAKAYSNLLKKKKT
GNLFKNDPTITTTTTQINKEEIISDPVNIIISEQNKKSKKNILHFFKKFKNNNNLDNKII
IIEKDQNAQKNYEEDIPSLI*i**tfytkifdfkkkk


Frame B:
kkink*ink*in*kikikikikikikiiikk*kiykiiikkkwnftkpkhiqiy*krrkl
eiylkmilq*qqqppk*ikkklflilli**lvnkiknlkkiyyifskslkiiii*iik**
l*kkikmlkkimkrifpl*fkfnkhfirkfsilkkkk


Frame C:
kk*ink*ink*tkk*k*k*k*k*k*k**lknkkyik**lkrngilrsqsifkfikkeenw
ksi*k*synnnnnhpnk*rrnyf*sc*ynn**tk*ki*kkyitffqkv*k***fr**nnn
yrkrskcskkl*rgyslfnlnlinilyenfrf*kkk

Query= Contig-U04390-1 (Contig-U04390-1Q)
/CSM_Contig/Contig-U04390-1Q.Seq.d
         (472 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U04390-1 (Contig-U04390-1Q) /CSM_Contig/Conti...   311  4e-85
Contig-U14809-1 (Contig-U14809-1Q) /CSM_Contig/Conti...    36  0.033
Contig-U14176-1 (Contig-U14176-1Q) /CSM_Contig/Conti...    36  0.033
Contig-U13881-1 (Contig-U13881-1Q) /CSM_Contig/Conti...    36  0.033
Contig-U13610-1 (Contig-U13610-1Q) /CSM_Contig/Conti...    36  0.033
Contig-U11799-1 (Contig-U11799-1Q) /CSM_Contig/Conti...    36  0.033
Contig-U11766-1 (Contig-U11766-1Q) /CSM_Contig/Conti...    36  0.033
Contig-U08936-1 (Contig-U08936-1Q) /CSM_Contig/Conti...    36  0.033
Contig-U08927-1 (Contig-U08927-1Q) /CSM_Contig/Conti...    36  0.033
Contig-U01824-1 (Contig-U01824-1Q) /CSM_Contig/Conti...    36  0.033

>Contig-U04390-1 (Contig-U04390-1Q) /CSM_Contig/Contig-U04390-1Q.Seq.d
          Length = 472

 Score =  311 bits (157), Expect = 4e-85
 Identities = 157/157 (100%)
 Strand = Plus / Plus

                                                                       
Query: 124 gaaatggaattttacgaagccaaagcatattcaaatttattaaaaaagaagaaaactgga 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 124 gaaatggaattttacgaagccaaagcatattcaaatttattaaaaaagaagaaaactgga 183

                                                                       
Query: 184 aatctatttaaaaatgatcctacaataacaacaacaaccacccaaataaataaagaagaa 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 184 aatctatttaaaaatgatcctacaataacaacaacaaccacccaaataaataaagaagaa 243

                                                
Query: 244 attatttctgatcctgttaatataataattagtgaac 280
           |||||||||||||||||||||||||||||||||||||
Sbjct: 244 attatttctgatcctgttaatataataattagtgaac 280


 Score =  133 bits (67), Expect = 2e-31
 Identities = 67/67 (100%)
 Strand = Plus / Plus

                                                                       
Query: 393 ttatgaagaggatattccctctttaatttaaatttaataaacattttatacgaaaatttt 452
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 ttatgaagaggatattccctctttaatttaaatttaataaacattttatacgaaaatttt 452

                  
Query: 453 cgatttt 459
           |||||||
Sbjct: 453 cgatttt 459


>Contig-U14809-1 (Contig-U14809-1Q) /CSM_Contig/Contig-U14809-1Q.Seq.d
          Length = 528

 Score = 36.2 bits (18), Expect = 0.033
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                             
Query: 204 tacaataacaacaacaac 221
           ||||||||||||||||||
Sbjct: 234 tacaataacaacaacaac 251


>Contig-U14176-1 (Contig-U14176-1Q) /CSM_Contig/Contig-U14176-1Q.Seq.d
          Length = 1253

 Score = 36.2 bits (18), Expect = 0.033
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                             
Query: 205 acaataacaacaacaacc 222
           ||||||||||||||||||
Sbjct: 148 acaataacaacaacaacc 165


 Score = 30.2 bits (15), Expect = 2.0
 Identities = 18/19 (94%)
 Strand = Plus / Plus

                               
Query: 205  acaataacaacaacaacca 223
            |||| ||||||||||||||
Sbjct: 1068 acaacaacaacaacaacca 1086


 Score = 28.2 bits (14), Expect = 8.0
 Identities = 17/18 (94%)
 Strand = Plus / Plus

                              
Query: 204  tacaataacaacaacaac 221
            ||||| ||||||||||||
Sbjct: 1052 tacaacaacaacaacaac 1069


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 16,747
Number of Sequences: 6905
Number of extensions: 16747
Number of successful extensions: 3857
Number of sequences better than 10.0: 713
length of query: 472
length of database: 5,674,871
effective HSP length: 16
effective length of query: 456
effective length of database: 5,564,391
effective search space: 2537362296
effective search space used: 2537362296
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)

Query= Contig-U04390-1 (Contig-U04390-1Q) /CSM_Contig/Contig-U04390-1Q.Seq.d
         (472 letters)

Database: ddbj_A
           102,105,510 sequences; 101,790,757,118 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(C93027) Dictyostelium discoideum slug cDNA, clone SSF492.        196   4e-78  2
(AU072633) Dictyostelium discoideum slug cDNA, clone SSA437.      226   6e-55  1
(AU072940) Dictyostelium discoideum slug cDNA, clone SSF492.      222   9e-54  1
(AC009306) Homo sapiens BAC clone RP11-290K24 from 2, comple...    38   0.006  6
(AI181494) uc57g02.r1 Soares_thymus_2NbMT Mus musculus cDNA ...    38   0.017  2
(AC198570) Spermophilus tridecemlineatus clone VMRC20-276J20...    52   0.019  1
(G82829) S209P6396RF8.T0 C3H/HeJ Mus musculus STS genomic, s...    44   0.026  2
(CU633545) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    34   0.048  2
(AC117081) Dictyostelium discoideum chromosome 2 map 5862124...    38   0.053  5
(CT384807) Sus scrofa genomic clone CH242-421M16, genomic su...    28   0.056  3
(BC085886) Rattus norvegicus archaelysin family metallopepti...    50   0.077  1
(AC126998) Rattus norvegicus clone CH230-131L4, WORKING DRAF...    50   0.077  1
(AC106648) Rattus norvegicus clone CH230-62K2, WORKING DRAFT...    50   0.077  1
(CU915443) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    50   0.077  1
(AC193528) Zea mays chromosome unknown clone CH201-359A20; Z...    50   0.077  1
(EY860090) CM30-C1-401-001-G05-CT.F Sweet lime leaf, infecte...    50   0.077  1
(AC109836) Rattus norvegicus clone CH230-199A13, *** SEQUENC...    48   0.10   3
(CU466340) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    34   0.18   2
(CU468583) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    34   0.18   2
(CU582931) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    34   0.18   2
(CR954963) Zebrafish DNA sequence from clone DKEY-77J9 in li...    48   0.30   1
(CR450821) Zebrafish DNA sequence from clone CH211-156B7 in ...    48   0.30   1
(GF081233) pRRL2:Newb:20080411:91163 USMARC Pig Breed SNP Di...    48   0.30   1
(AC141536) Rattus norvegicus clone CH230-503G12, WORKING DRA...    48   0.30   1
(FP102150) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    48   0.30   1
(FP015888) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    48   0.30   1
(CU993817) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    48   0.30   1
(CT616044) Danio rerio EST, clone ZF_mu_64d11 5'.                  48   0.30   1
(CB609713) AMGNNUC:SRVC1-00114-H11-A srvc1 (10901) Rattus no...    48   0.30   1
(FM966436) Glossina morsitans morsitans EST, clone GMsg44b10...    34   0.33   3
(BM516010) kj72c01.y1 Ascaris suum female head SL1 TOPO v1 M...    36   0.34   2
(AM447019) Vitis vinifera, whole genome shotgun sequence, co...    38   0.43   4
(AM464367) Vitis vinifera, whole genome shotgun sequence, co...    40   0.53   2
(CU469464) Candidatus Phytoplasma mali strain AT complete ch...    38   0.60   9
(DW345813) PP_LEc0004D20f Peach shoot Prunus persica cDNA cl...    40   0.63   2
(CU463944) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    34   0.65   2
(CU915784) Zebrafish DNA sequence from clone CH73-340N6 in l...    36   0.67   2
(AC170276) Bos taurus clone CH240-261K4, WORKING DRAFT SEQUE...    38   0.77   4
(AC116977) Dictyostelium discoideum chromosome 2 map 5515173...    34   0.80   8
(AC025176) Homo sapiens chromosome 5 clone CTD-2116N20, comp...    42   0.82   2
(BH148213) ENTPP72TR Entamoeba histolytica Sheared DNA Entam...    34   0.84   2
(FH924254) CHO_NF2021xa07f1.ab1 CHO_NF2 Nicotiana tabacum ge...    34   0.85   2
(BD061520) Genome DNA of symbiotic bacteria of aphid.              40   0.86   7
(AR409405) Sequence 1 from patent US 6632935.                      40   0.86   7
(BA000003) Buchnera aphidicola str. APS (Acyrthosiphon pisum...    40   0.86   7
(CP001158) Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisu...    40   0.86   7
(CP001161) Buchnera aphidicola str. 5A (Acyrthosiphon pisum)...    40   0.87   7
(CR855309) Zebrafish DNA sequence from clone DKEY-35B7 in li...    38   0.90   4
(AC135633) Mus musculus BAC clone RP24-84O13 from chromosome...    38   0.90   4
(AX344550) Sequence 1 from Patent WO0200932.                       38   0.93   6
(AL929356) Plasmodium falciparum strain 3D7, chromosome 9; s...    38   1.2    7
(AL954869) Mouse DNA sequence from clone RP23-477I13 on chro...    46   1.2    1
(AC166332) Mus musculus chromosome 1, clone RP24-266F18, com...    46   1.2    1
(AC155818) Mus musculus BAC clone RP23-397H1 from chromosome...    46   1.2    1
(AC115706) Mus musculus chromosome 8, clone RP23-382B3, comp...    46   1.2    1
(EU042851) Castela coccinea voucher A. Krapovickas and C.L. ...    46   1.2    1
(AC216672) Populus trichocarpa clone POP018-I12, complete se...    46   1.2    1
(AL451064) Human DNA sequence from clone RP11-177G23 on chro...    46   1.2    1
(CU862042) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    46   1.2    1
(AC094161) Rattus norvegicus clone CH230-2O19, *** SEQUENCIN...    46   1.2    1
(AL450316) Human DNA sequence *** SEQUENCING CANCELLED *** f...    46   1.2    1
(AC188750) Zea mays chromosome 3 clone CH201-276E19; ZMMBBc0...    46   1.2    1
(AQ640029) 927P1-15H4.TV 927P1 Trypanosoma brucei genomic cl...    46   1.2    1
(ER607929) 1093016289445 Global-Ocean-Sampling_GS-36-01-01-2...    46   1.2    1
(EJ507678) 1095407012963 Global-Ocean-Sampling_GS-28-01-01-1...    46   1.2    1
(DX463950) Cpl05745 Papaya Genomic DNA BAC Library Carica pa...    46   1.2    1
(AG262091) Lotus japonicus DNA, clone:LjT54k02_sfi.                46   1.2    1
(CD242796) AGENCOURT_14125936 NIH_MGC_179 Homo sapiens cDNA ...    46   1.2    1
(EX550585) AIAC-aaa37f06.b1 Ancylostoma_caninum_EST_Male_pSM...    46   1.2    1
(ES593643) 000001602752_A12.ab1 Eucalyptus globulus under lo...    46   1.2    1
(AE002160) Chlamydia muridarum Nigg, complete genome.              46   1.2    1
(AC009627) Homo sapiens chromosome 8 clone RP11-322N9 map 8,...    40   1.2    4
(GN008694) Sequence 1135 from Patent EP2014669.                    36   1.4    4
(AC116984) Dictyostelium discoideum chromosome 2 map 2567470...    34   1.6    6
(AM650453) Entamoeba moshkovskii FIC GSS, clone mosh075d06.q1k.    42   1.7    2
(AX344569) Sequence 20 from Patent WO0200932.                      42   1.7    8
(ED635172) GM_WBa0041B20.r GM_WBa Glycine max genomic clone ...    34   1.8    2
(EI077943) hhf0003cf05.b1 hhf Oryza nivara genomic clone hhf...    38   1.8    2
(AC141791) Apis mellifera clone CH224-59E3, WORKING DRAFT SE...    40   1.8    4
(BU843616) AGENCOURT_10416236 NIH_MGC_143 Mus musculus cDNA ...    30   2.0    3
(BX927247) Zebrafish DNA sequence from clone CH211-189K22 in...    40   2.1    4
(AJ323466) Homo sapiens genomic sequence surrounding NotI si...    36   2.1    2
(EU427337) Hydaropsis longirostris mitochondrion, complete g...    40   2.1    2
(FB571360) Sequence 227 from Patent EP1865317.                     38   2.2    5
(EU881867) Anopheles arabiensis isolate TzN9_S TEP1 gene, pa...    42   2.2    2
(AE014841) Plasmodium falciparum 3D7 chromosome 11 section 6...    34   2.3    2
(CU693426) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    34   2.3    2
(AC201945) Gallus gallus chromosome Z clone CH261-100J4, WOR...    34   2.3    2
(AL596116) Mouse DNA sequence from clone RP23-317F9 on chrom...    34   2.3    2
(AC188445) Gallus gallus BAC clone CH261-84O21 from chromoso...    34   2.3    2
(CU856242) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    34   2.3    2
(FP102670) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    34   2.4    2
(CT737290) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    34   2.4    2
(CU606872) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    34   2.4    2
(CU468497) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    34   2.4    2
(FP016131) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    34   2.4    2
(AL365217) Human DNA sequence from clone RP11-74E24 on chrom...    34   2.4    4
(CU062504) Zebrafish DNA sequence from clone CH73-373E20 in ...    32   2.5    2
(CT030025) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    38   2.5    2
(X69465) S.scrofa gene for skeletal muscle ryanodine receptor.     34   2.6    2
(CU012064) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    36   2.7    4
(AJ245435) Plasmodium falciparum gc-alpha gene for guanylyl ...    34   2.7    2
(AL929352) Plasmodium falciparum strain 3D7, chromosome 5, s...    38   2.8    8
(AC116551) Dictyostelium discoideum chromosome 2 map complem...    36   3.0    5
(AC121438) Rattus norvegicus clone CH230-253L3, *** SEQUENCI...    44   3.1    3
(DK250988) Oryzias latipes cDNA, clone: olvl15c19, 3' end.         34   3.1    2
(CG786133) CM_MBa-74K05-T7 CUGI Cucumis melo EcoRI BAC libra...    32   3.1    2
(EY383835) CAXA4817.rev CAXA Helobdella robusta Subtracted L...    32   3.2    2
(CC322886) TAM32-29E6_Sp6.1 TAM32 Gallus gallus genomic clon...    34   3.2    2
(EL501899) 095_PFLAB1-S-PLATE5B.AB1 Blood stage Plasmodium f...    34   3.2    2
(CU633258) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    34   3.2    5
(FH088902) CHO_OF3034xe08f1.ab1 CHO_OF3 Nicotiana tabacum ge...    34   3.3    2
(AY351425) Plebejus argus haplotype pleb23 mitochondrial tRN...    40   3.4    2
(AC116986) Dictyostelium discoideum chromosome 2 map 2234041...    36   3.4    7
(AC164353) Bos taurus clone CH240-138P4, *** SEQUENCING IN P...    44   3.4    3
(AY351426) Plebejus argus haplotype pleb5 mitochondrial tRNA...    40   3.4    2
(BX546472) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    36   3.4    4
(CR376748) Zebrafish DNA sequence from clone DKEY-7I1 in lin...    36   3.6    5
(CR628324) Zebrafish DNA sequence from clone CH211-191A3 in ...    32   3.7    5
(AC093472) Mus musculus clone RP23-29M18, WORKING DRAFT SEQU...    44   3.9    3
(AC124311) Homo sapiens chromosome 15, clone RP11-479F18, co...    44   3.9    2
(AC004738) Homo sapiens Chromosome 15q11-q13 PAC clone pDJ35...    44   4.0    2
(EU881839) Anopheles arabiensis isolate ToMB7_S TEP1 gene, p...    42   4.2    2
(BX088572) Zebrafish DNA sequence from clone CH211-246K16 in...    38   4.4    2
(AY351424) Plebejus argus haplotype pleb14 mitochondrial tRN...    40   4.5    2
(AJ404228) Saccharomyces douglasii mitochondrial tRNA gene c...    36   4.7    2
(CU855537) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    34   4.7    4
(AC128873) Rattus norvegicus clone CH230-502N13, WORKING DRA...    38   4.7    5
(AL713853) Mouse DNA sequence from clone RP23-63C10 on chrom...    44   4.7    1
(AC154366) Mus musculus BAC clone RP24-567I24 from 17, compl...    44   4.7    1
(AM461722) Vitis vinifera contig VV78X192824.3, whole genome...    44   4.7    1
(AC208811) Populus trichocarpa clone JGIACSB269-L05, complet...    44   4.7    1
(CQ726066) Sequence 12000 from Patent WO02068579.                  44   4.7    1
(AJ844309) Himantopterus dohertyi mitochondrial partial tRNA...    44   4.7    1
(AC124997) Homo sapiens chromosome 15, clone RP11-466L14, co...    44   4.7    1
(AC104051) Homo sapiens chromosome 8, clone CTD-2339F6, comp...    44   4.7    1
(AC103842) Homo sapiens chromosome 8, clone RP11-367J23, com...    44   4.7    1
(AC130851) Rattus norvegicus clone CH230-92G22, *** SEQUENCI...    44   4.7    1
(CU855896) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    44   4.7    1
(CU024906) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   4.7    1
(AC232407) Lama pacos clone CH246-221E13, WORKING DRAFT SEQU...    44   4.7    1
(AC216950) Solanum tuberosum chromosome 6 clone RHPOTKEY094I...    44   4.7    1
(AC216947) Solanum tuberosum chromosome 6 clone RHPOTKEY006L...    44   4.7    1
(AC197050) Zea mays chromosome 7 clone CH201-55F16; ZMMBBc00...    44   4.7    1
(AC194395) Zea mays chromosome 1 clone ZMMBBb-624I12; ZMMBBb...    44   4.7    1
(AC182157) Bos taurus clone CH240-515I2, WORKING DRAFT SEQUE...    44   4.7    1
(AC180613) Strongylocentrotus purpuratus clone R3-3090N8, WO...    44   4.7    1
(AC169743) Bos taurus clone CH240-243B18, WORKING DRAFT SEQU...    44   4.7    1
(AC016117) Homo sapiens chromosome 8 clone RP11-27J3 map 8, ...    44   4.7    1
(AZ199863) SP_1040_B1_E03_SP6E Strongylocentrotus purpuratus...    44   4.7    1
(FH787762) OSB_1174002xn23f1.ab1 OSB_1174 Nicotiana tabacum ...    44   4.7    1
(FH727156) CHO_OF5090xp06r1.ab1 CHO_OF5 Nicotiana tabacum ge...    44   4.7    1
(FH435355) CHO_OF4990xe20r1.ab1 CHO_OF4 Nicotiana tabacum ge...    44   4.7    1
(FH397365) CHO_OF4808xh12f1.ab1 CHO_OF4 Nicotiana tabacum ge...    44   4.7    1
(ET757379) CHO_OF271xf24r1.ab1 CHO_OF Nicotiana tabacum geno...    44   4.7    1
(ER368176) 1093022142515 Global-Ocean-Sampling_GS-34-01-01-1...    44   4.7    1
(EK303340) 1095462372274 Global-Ocean-Sampling_GS-31-01-01-1...    44   4.7    1
(EK202260) 1095460061400 Global-Ocean-Sampling_GS-31-01-01-1...    44   4.7    1
(EK005703) 1092955089249 Global-Ocean-Sampling_GS-31-01-01-1...    44   4.7    1
(EJ476635) 1095403447151 Global-Ocean-Sampling_GS-28-01-01-1...    44   4.7    1
(EJ264592) 1095351000138 Global-Ocean-Sampling_GS-27-01-01-1...    44   4.7    1
(EJ222833) 1092351277211 Global-Ocean-Sampling_GS-27-01-01-1...    44   4.7    1
(EJ114118) 1092343257627 Global-Ocean-Sampling_GS-27-01-01-1...    44   4.7    1
(ED830371) Ynhw30966 HW-YUBAC Bos taurus genomic clone HW-YU...    44   4.7    1
(AL334995) Tetraodon nigroviridis genome survey sequence SP6...    44   4.7    1
(AL325083) Tetraodon nigroviridis genome survey sequence T7 ...    44   4.7    1
(AL225364) Tetraodon nigroviridis genome survey sequence T7 ...    44   4.7    1
(CT369580) Sus scrofa genomic clone CH242-461O14, genomic su...    44   4.7    1
(CR922664) Sus scrofa BES.                                         44   4.7    1
(CL509399) SAIL_811_H07.v3 SAIL Collection Arabidopsis thali...    44   4.7    1
(CL120940) ISB1-79L12_Sp6.1 ISB1 Xenopus (Silurana) tropical...    44   4.7    1
(CE853617) tigr-gss-dog-17000337099409 Dog Library Canis lup...    44   4.7    1
(CE198201) tigr-gss-dog-17000372198964 Dog Library Canis lup...    44   4.7    1
(AU224054) Ipomoea trifida cDNA, clone:IAM-0422.                   44   4.7    1
(AM787556) Nicotiana tabacum EST, clone nt002083071.               44   4.7    1
(CT852644) Oryza sativa Indica Group EST sequence:OSIGCSA039...    44   4.7    1
(CO592228) DG2-60d5 DG2-brain Canis lupus familiaris cDNA 3'...    44   4.7    1
(CO585926) DG2-122l11 DG2-brain Canis lupus familiaris cDNA ...    44   4.7    1
(CB285082) DF1944 Dermatophagoides farinae cDNA library Derm...    44   4.7    1
(CP001176) Bacillus cereus B4264, complete genome.                 44   4.7    1
(AE017194) Bacillus cereus ATCC 10987, complete genome.            44   4.7    1
(AE016877) Bacillus cereus ATCC 14579, complete genome.            44   4.7    1
(CP000397) Borrelia afzelii PKo plasmid lp60-2, complete seq...    32   4.8    5
(AK048917) Mus musculus 0 day neonate cerebellum cDNA, RIKEN...    42   4.8    2
(BX323449) Zebrafish DNA sequence from clone DKEYP-115E12 in...    38   4.8    2
(AL031679) Human DNA sequence from clone RP5-836E8 on chromo...    34   4.9    3
(AC129021) Mus musculus BAC clone RP23-312H15 from 16, compl...    38   4.9    2
(AC026943) Homo sapiens chromosome 6 clone RP11-220P17 map 6...    34   5.0    6
(AC117834) Homo sapiens chromosome 8, clone CTD-3239E11, com...    40   5.0    2
(AL356277) Human DNA sequence from clone RP11-554D15 on chro...    34   5.1    5
(BZ117841) CH230-510P1.TV CHORI-230 Segment 2 Rattus norvegi...    34   5.3    2
(AC141787) Apis mellifera clone CH224-59E7, WORKING DRAFT SE...    34   5.5    4
(AC097833) Rattus norvegicus clone CH230-69M20, *** SEQUENCI...    38   5.9    2
(CS468878) Sequence 69 from Patent EP1748080.                      32   6.3    6
(CS419355) Sequence 69 from Patent WO2006094836.                   32   6.3    6
(FH521904) CHO_OF4803xo06f1.ab1 CHO_OF4 Nicotiana tabacum ge...    40   6.3    2
(AB267275) Rhagophthalmus ohbai mitochondrial DNA, complete ...    34   6.4    3
(BZ213351) CH230-331J21.TJ CHORI-230 Segment 2 Rattus norveg...    34   6.5    2
(BX323818) Zebrafish DNA sequence from clone DKEY-48H7 in li...    34   6.5    5
(BZ271941) CH230-327J3.TV CHORI-230 Segment 2 Rattus norvegi...    34   6.6    2
(CT158830) Sus scrofa genomic clone CH242-223D23, genomic su...    34   6.7    2
(BH579604) BOGXK10TR BOGX Brassica oleracea genomic clone BO...    34   6.9    2
(AC177009) Strongylocentrotus purpuratus clone R3-1038N07, W...    36   7.2    3
(CK018605) AGENCOURT_16545269 NIH_ZGC_10 Danio rerio cDNA cl...    40   7.3    2
(AL034559) Plasmodium falciparum MAL3P7.                           42   7.3    6
(AC204133) Xenopus (Silurana) tropicalis clone ISB1-150G17, ...    36   7.4    4
(AL109316) Drosophila melanogaster genome survey sequence T7...    34   7.4    2
(CU896590) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    34   7.5    3
(AZ676851) ENTMD96TF Entamoeba histolytica Sheared DNA Entam...    34   7.5    2
(CW974605) AIAA-aaa69f02.b1 Ancylostoma caninum whole genome...    36   7.5    2
(EJ670003) 1092955054732 Global-Ocean-Sampling_GS-30-02-01-1...    40   7.8    2
(EJ720548) 1092959449196 Global-Ocean-Sampling_GS-30-02-01-1...    40   7.9    2
(AE014820) Plasmodium falciparum 3D7 chromosome 14 section 5...    32   7.9    7
(AC098595) Homo sapiens BAC clone RP11-495L18 from 4, comple...    38   8.0    3
(AC215440) Solanum lycopersicum chromosome 2 clone C02HBa032...    42   8.1    3
(AX344564) Sequence 15 from Patent WO0200932.                      34   8.3    6
(FP102001) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    36   8.4    3
(AC110940) Rattus norvegicus clone CH230-214K21, *** SEQUENC...    30   8.4    2
(AC137244) Rattus norvegicus clone CH230-unknown, *** SEQUEN...    30   8.5    2
(AC160262) Bos taurus clone CH240-86J15, WORKING DRAFT SEQUE...    32   8.5    2
(AC129851) Homo sapiens X BAC RP11-669P14 (Roswell Park Canc...    36   8.5    3
(BX936390) Zebrafish DNA sequence from clone DKEY-6E2 in lin...    30   8.6    2
(CU457430) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    32   8.6    2
(AC233324) Colobus guereza clone CH272-127C17, WORKING DRAFT...    40   8.7    3
(FP016120) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    38   8.7    4
(AC185890) Bos taurus clone RP42-167D22, WORKING DRAFT SEQUE...    32   8.7    2
(CR381533) Zebrafish DNA sequence from clone CH211-237P19 in...    32   8.8    2
(AC210139) Populus trichocarpa clone POP113-I04, complete se...    32   8.8    2
(AC067816) Homo sapiens chromosome 17 clone RP11-769P23 map ...    36   8.9    3
(CU914269) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    36   9.0    4
(AL929292) Zebrafish DNA sequence from clone DKEY-11L24 in l...    40   9.1    5
(CU607035) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    34   9.1    4
(AP003088) Staphylococcus aureus TY4, ETB plasmid DNA, compl...    30   9.4    2
(AC115598) Dictyostelium discoideum chromosome 2 map 581427-...    36   9.4    5
(AX346353) Sequence 1424 from Patent WO0200928.                    36   9.5    3
(AC067826) Homo sapiens chromosome 4 clone RP11-650G8 map 4,...    36   9.7    3
(AC090383) Homo sapiens chromosome 18, clone RP11-727C1, com...    38   9.8    2
(AC180733) Strongylocentrotus purpuratus clone R3-3083M22, W...    34   10.0   5

>(C93027) Dictyostelium discoideum slug cDNA, clone SSF492.
          Length = 288

 Score =  196 bits (99), Expect(2) = 4e-78
 Identities = 99/99 (100%)
 Strand = Plus / Plus


Query: 182 gaaatctatttaaaaatgatcctacaataacaacaacaaccacccaaataaataaagaag 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   gaaatctatttaaaaatgatcctacaataacaacaacaaccacccaaataaataaagaag 60


Query: 242 aaattatttctgatcctgttaatataataattagtgaac 280
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 61  aaattatttctgatcctgttaatataataattagtgaac 99

 Score =  131 bits (66), Expect(2) = 4e-78
 Identities = 66/66 (100%)
 Strand = Plus / Plus


Query: 394 tatgaagaggatattccctctttaatttaaatttaataaacattttatacgaaaattttc 453
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 213 tatgaagaggatattccctctttaatttaaatttaataaacattttatacgaaaattttc 272


Query: 454 gatttt 459
           ||||||
Sbjct: 273 gatttt 278

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 102105510
Number of Hits to DB: 433,879,886
Number of extensions: 40464714
Number of successful extensions: 4559122
Number of sequences better than 10.0: 243
Length of query: 472
Length of database: 101,790,757,118
Length adjustment: 23
Effective length of query: 449
Effective length of database: 99,442,330,388
Effective search space: 44649606344212
Effective search space used: 44649606344212
X1: 11 (21.8 bits)
S2: 21 (42.1 bits)

Query= Contig-U04390-1 (Contig-U04390-1Q) /CSM_Contig/Contig-U04390-1Q.Seq.d
         (472 letters)

Database: nrp_A
           3,268,448 sequences; 1,061,185,681 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54HX0) RecName: Full=Uncharacterized protein DDB_G0289163;          124   1e-27
T24607(T24607)hypothetical protein T06E6.12 - Caenorhabditis ele...    32   5.4
T24603(T24603) hypothetical protein T06E6.9 - Caenorhabditis ele...    32   7.0

>(Q54HX0) RecName: Full=Uncharacterized protein DDB_G0289163;
          Length = 98

 Score =  124 bits (310), Expect = 1e-27
 Identities = 67/98 (68%), Positives = 67/98 (68%)
 Frame = +1

Query: 127 MEFYEAKAYSNLLKKKKTGNLFKNDPXXXXXXXQINKEEIISDPVNIIISEQNKKSXXXX 306
           MEFYEAKAYSNLLKKKKTGNLFKNDP       QINKEEIISDPVNIIISEQNKKS
Sbjct: 1   MEFYEAKAYSNLLKKKKTGNLFKNDPTITTTTTQINKEEIISDPVNIIISEQNKKSKKNI 60

Query: 307 XXXXXXXXXXXXXXXXXXXXEKDQNAQKNYEEDIPSLI 420
                               EKDQNAQKNYEEDIPSLI
Sbjct: 61  LHFFKKFKNNNNLDNKIIIIEKDQNAQKNYEEDIPSLI 98

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3268448
Number of Hits to DB: 333,851,710
Number of extensions: 3697652
Number of successful extensions: 8271
Number of sequences better than 10.0: 3
Number of HSP's gapped: 8263
Number of HSP's successfully gapped: 3
Length of query: 157
Length of database: 1,061,185,681
Length adjustment: 118
Effective length of query: 39
Effective length of database: 675,508,817
Effective search space: 26344843863
Effective search space used: 26344843863
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 30 (16.2 bits)

 psg: 0.75  gvh: 0.28  alm: 0.57  top: 0.53  tms: 0.00  mit: 0.19  mip: 0.00
 nuc: 0.04  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 36.0 %: cytoplasmic
	  8.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: vesicles of secretory system

>> prediction for Contig-U04390-1 is nuc